Query 005476
Match_columns 695
No_of_seqs 824 out of 4742
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 00:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6E-131 1E-135 1133.5 75.2 673 15-693 182-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-123 5E-128 1045.7 70.1 613 83-695 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 9.3E-84 2E-88 742.2 57.3 650 17-690 83-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-67 2.5E-72 596.2 59.9 504 49-562 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5E-66 1.1E-70 581.1 48.0 436 17-458 120-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 4.2E-64 9.1E-69 567.2 56.4 498 19-522 369-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-29 6.6E-34 295.3 57.4 506 37-557 349-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-29 1E-33 293.7 58.5 505 37-556 315-833 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.9E-31 4.2E-36 221.2 6.6 106 562-685 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 2.1E-21 4.5E-26 230.0 52.3 503 37-554 48-665 (1157)
11 PRK11447 cellulose synthase su 99.9 4.4E-20 9.5E-25 218.8 58.2 476 69-558 161-744 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1E-20 2.2E-25 189.7 34.4 449 91-552 53-516 (966)
13 PRK09782 bacteriophage N4 rece 99.9 3.8E-18 8.2E-23 193.3 52.2 467 69-556 58-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 9.6E-20 2.1E-24 182.8 32.0 418 126-556 53-486 (966)
15 PRK09782 bacteriophage N4 rece 99.9 6.2E-17 1.4E-21 183.5 52.2 502 38-558 65-743 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-18 1.2E-22 188.6 39.6 250 301-555 307-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 1.8E-18 3.8E-23 182.9 28.7 288 268-562 46-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 2.3E-18 4.9E-23 182.1 28.3 300 92-425 41-354 (389)
19 PRK10049 pgaA outer membrane p 99.8 3.2E-16 6.9E-21 177.8 42.6 395 128-554 22-455 (765)
20 PRK15174 Vi polysaccharide exp 99.8 2.9E-16 6.2E-21 174.4 39.7 366 168-554 17-402 (656)
21 PRK10049 pgaA outer membrane p 99.8 8.8E-16 1.9E-20 174.3 41.7 372 153-556 12-423 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 3.4E-15 7.4E-20 166.4 42.6 438 88-554 129-596 (615)
23 PRK15174 Vi polysaccharide exp 99.8 1.1E-15 2.3E-20 169.8 37.4 349 198-556 16-382 (656)
24 PRK14574 hmsH outer membrane p 99.8 1.5E-14 3.2E-19 161.1 44.1 436 62-527 44-519 (822)
25 PRK14574 hmsH outer membrane p 99.8 2.4E-14 5.1E-19 159.4 43.3 430 96-556 44-514 (822)
26 KOG2002 TPR-containing nuclear 99.7 7.7E-14 1.7E-18 148.4 41.1 497 47-556 196-746 (1018)
27 KOG2002 TPR-containing nuclear 99.7 2.1E-13 4.6E-18 145.2 40.7 478 71-557 146-677 (1018)
28 KOG4422 Uncharacterized conser 99.7 2.5E-12 5.4E-17 124.8 38.1 417 21-486 117-587 (625)
29 KOG2003 TPR repeat-containing 99.7 1.3E-13 2.8E-18 134.2 27.8 444 92-541 207-709 (840)
30 KOG4422 Uncharacterized conser 99.7 3.5E-12 7.7E-17 123.8 37.2 318 86-420 116-464 (625)
31 KOG0495 HAT repeat protein [RN 99.6 6.3E-11 1.4E-15 121.0 41.4 455 98-569 388-892 (913)
32 KOG2076 RNA polymerase III tra 99.6 9.2E-11 2E-15 124.7 42.4 471 69-542 153-721 (895)
33 KOG0495 HAT repeat protein [RN 99.6 1E-09 2.2E-14 112.4 46.7 416 129-556 384-847 (913)
34 KOG0547 Translocase of outer m 99.5 4.1E-11 8.9E-16 118.6 32.0 404 89-554 118-565 (606)
35 PF13429 TPR_15: Tetratricopep 99.5 3.8E-14 8.2E-19 141.9 10.8 253 297-554 17-276 (280)
36 KOG1126 DNA-binding cell divis 99.5 3.4E-12 7.4E-17 131.3 23.1 277 272-557 334-622 (638)
37 KOG2003 TPR repeat-containing 99.5 4.5E-11 9.7E-16 116.8 29.1 456 51-518 200-719 (840)
38 KOG4318 Bicoid mRNA stability 99.5 2.5E-10 5.4E-15 120.7 34.9 354 185-559 202-598 (1088)
39 KOG2076 RNA polymerase III tra 99.5 8.4E-11 1.8E-15 124.9 31.7 330 201-566 153-523 (895)
40 KOG1126 DNA-binding cell divis 99.5 8.2E-12 1.8E-16 128.6 21.2 244 302-554 333-585 (638)
41 KOG1915 Cell cycle control pro 99.5 6.1E-09 1.3E-13 102.9 40.0 476 69-554 87-624 (677)
42 KOG1155 Anaphase-promoting com 99.4 1E-09 2.3E-14 108.2 34.0 312 231-554 173-494 (559)
43 PRK10747 putative protoheme IX 99.4 9.3E-11 2E-15 123.0 28.8 286 200-522 97-391 (398)
44 TIGR00540 hemY_coli hemY prote 99.4 4.5E-10 9.8E-15 118.5 32.2 291 198-520 95-398 (409)
45 KOG1915 Cell cycle control pro 99.4 8.1E-09 1.8E-13 102.1 36.3 388 167-563 84-508 (677)
46 TIGR00540 hemY_coli hemY prote 99.4 2.4E-10 5.1E-15 120.6 27.9 282 167-486 95-396 (409)
47 PRK10747 putative protoheme IX 99.4 1.1E-09 2.4E-14 114.9 31.7 275 270-554 97-389 (398)
48 PF13429 TPR_15: Tetratricopep 99.4 6.2E-12 1.3E-16 125.9 13.5 255 92-350 14-275 (280)
49 KOG1155 Anaphase-promoting com 99.3 1.8E-08 4E-13 99.6 35.9 155 325-484 332-490 (559)
50 KOG1173 Anaphase-promoting com 99.3 4.9E-09 1.1E-13 106.2 32.7 259 289-554 245-517 (611)
51 COG2956 Predicted N-acetylgluc 99.3 1.1E-09 2.5E-14 103.2 24.5 218 99-318 48-279 (389)
52 COG2956 Predicted N-acetylgluc 99.3 3.2E-09 7E-14 100.2 26.4 267 200-502 48-325 (389)
53 KOG4318 Bicoid mRNA stability 99.3 9.6E-10 2.1E-14 116.4 25.3 435 107-554 11-556 (1088)
54 TIGR02521 type_IV_pilW type IV 99.3 5.3E-10 1.1E-14 108.6 20.9 198 356-554 29-231 (234)
55 COG3071 HemY Uncharacterized e 99.3 1.6E-08 3.5E-13 98.6 29.5 279 200-520 97-389 (400)
56 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 85.4 6.8 50 387-436 1-50 (50)
57 PF13041 PPR_2: PPR repeat fam 99.2 2E-11 4.4E-16 85.8 6.2 50 185-234 1-50 (50)
58 KOG1174 Anaphase-promoting com 99.2 3.6E-07 7.8E-12 89.3 35.4 301 220-526 192-505 (564)
59 KOG2376 Signal recognition par 99.2 1.6E-07 3.4E-12 96.0 33.9 434 94-551 20-516 (652)
60 KOG2047 mRNA splicing factor [ 99.2 8.4E-07 1.8E-11 91.4 39.0 491 52-555 102-687 (835)
61 KOG1173 Anaphase-promoting com 99.2 8.6E-08 1.9E-12 97.4 31.7 278 252-533 239-530 (611)
62 KOG1840 Kinesin light chain [C 99.2 5.3E-09 1.1E-13 109.3 24.1 231 324-554 200-478 (508)
63 KOG2047 mRNA splicing factor [ 99.2 3.8E-06 8.3E-11 86.8 42.4 484 47-541 133-709 (835)
64 COG3071 HemY Uncharacterized e 99.1 4E-08 8.6E-13 95.9 25.5 251 301-556 97-358 (400)
65 PRK12370 invasion protein regu 99.1 9.8E-09 2.1E-13 112.6 24.3 244 303-556 276-536 (553)
66 KOG4162 Predicted calmodulin-b 99.1 8.1E-07 1.8E-11 93.7 35.9 399 150-555 317-783 (799)
67 KOG1840 Kinesin light chain [C 99.1 1E-07 2.3E-12 99.8 28.3 236 257-520 199-478 (508)
68 KOG0547 Translocase of outer m 99.1 1.4E-07 3.1E-12 94.0 26.9 336 60-417 123-490 (606)
69 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-08 2.7E-13 102.3 20.3 211 338-557 41-267 (296)
70 TIGR02521 type_IV_pilW type IV 99.0 4.8E-08 1E-12 94.8 22.1 199 288-521 31-232 (234)
71 KOG3785 Uncharacterized conser 99.0 1E-05 2.2E-10 77.7 36.2 446 93-558 29-493 (557)
72 KOG3785 Uncharacterized conser 99.0 8.1E-07 1.8E-11 85.0 27.2 408 128-552 29-454 (557)
73 PRK12370 invasion protein regu 99.0 1.1E-07 2.4E-12 104.4 25.1 144 137-283 320-467 (553)
74 KOG1129 TPR repeat-containing 99.0 1.5E-08 3.3E-13 95.6 15.2 228 292-556 227-459 (478)
75 KOG4162 Predicted calmodulin-b 99.0 3.4E-05 7.4E-10 81.9 41.3 421 96-527 294-789 (799)
76 COG3063 PilF Tfp pilus assembl 99.0 5.4E-08 1.2E-12 88.1 17.5 161 392-557 38-204 (250)
77 KOG3616 Selective LIM binding 98.9 4.9E-06 1.1E-10 86.9 31.7 441 51-556 532-1025(1636)
78 KOG0985 Vesicle coat protein c 98.9 1.8E-05 3.9E-10 85.7 36.7 570 55-665 609-1361(1666)
79 KOG1156 N-terminal acetyltrans 98.9 4.6E-05 1E-09 79.3 38.3 323 186-520 142-510 (700)
80 KOG1156 N-terminal acetyltrans 98.9 2.1E-05 4.5E-10 81.8 35.5 430 88-557 10-470 (700)
81 PRK11189 lipoprotein NlpI; Pro 98.9 6.3E-07 1.4E-11 90.0 24.4 217 302-526 40-270 (296)
82 KOG3616 Selective LIM binding 98.9 1.1E-05 2.4E-10 84.3 33.1 195 330-551 739-933 (1636)
83 PF12569 NARP1: NMDA receptor- 98.9 1.5E-05 3.2E-10 84.9 35.1 45 507-551 472-516 (517)
84 KOG1129 TPR repeat-containing 98.9 1.3E-07 2.8E-12 89.5 17.3 231 256-491 222-461 (478)
85 KOG3617 WD40 and TPR repeat-co 98.8 9.8E-06 2.1E-10 85.8 30.9 385 50-487 724-1172(1416)
86 KOG0985 Vesicle coat protein c 98.8 0.00029 6.3E-09 76.8 42.0 493 31-557 492-1164(1666)
87 KOG1174 Anaphase-promoting com 98.8 3E-05 6.4E-10 76.3 30.6 159 152-312 228-392 (564)
88 KOG1127 TPR repeat-containing 98.8 5.2E-05 1.1E-09 82.5 35.1 509 37-554 476-1103(1238)
89 KOG2376 Signal recognition par 98.8 0.0001 2.2E-09 76.0 35.1 408 128-555 19-487 (652)
90 PRK04841 transcriptional regul 98.7 0.00057 1.2E-08 80.9 46.8 258 298-555 462-760 (903)
91 PF04733 Coatomer_E: Coatomer 98.7 1.3E-06 2.7E-11 86.6 20.0 158 362-526 106-270 (290)
92 PF12569 NARP1: NMDA receptor- 98.7 2.1E-05 4.5E-10 83.8 29.2 282 266-554 13-333 (517)
93 KOG4340 Uncharacterized conser 98.7 2.9E-05 6.3E-10 73.0 26.1 404 124-554 13-442 (459)
94 KOG1125 TPR repeat-containing 98.7 4.5E-07 9.8E-12 92.7 15.5 218 334-554 296-526 (579)
95 COG3063 PilF Tfp pilus assembl 98.7 3.2E-06 6.9E-11 76.8 19.2 199 290-525 37-240 (250)
96 cd05804 StaR_like StaR_like; a 98.7 3.1E-05 6.8E-10 80.6 29.4 256 297-556 52-337 (355)
97 KOG0548 Molecular co-chaperone 98.6 3.8E-05 8.1E-10 78.4 27.2 216 327-556 228-456 (539)
98 KOG1914 mRNA cleavage and poly 98.6 0.00029 6.4E-09 71.9 32.4 130 49-184 17-165 (656)
99 KOG0624 dsRNA-activated protei 98.6 8.8E-05 1.9E-09 71.2 26.9 288 262-556 43-371 (504)
100 PF04733 Coatomer_E: Coatomer 98.6 7.6E-07 1.6E-11 88.1 13.6 150 397-555 110-265 (290)
101 KOG1127 TPR repeat-containing 98.6 6.9E-05 1.5E-09 81.6 28.4 441 88-553 494-994 (1238)
102 KOG0548 Molecular co-chaperone 98.6 7.7E-05 1.7E-09 76.2 26.9 412 69-538 16-472 (539)
103 PRK04841 transcriptional regul 98.5 0.00022 4.7E-09 84.4 35.5 321 166-486 384-757 (903)
104 KOG1070 rRNA processing protei 98.5 6.8E-06 1.5E-10 92.0 19.8 200 355-558 1455-1666(1710)
105 TIGR03302 OM_YfiO outer membra 98.5 6.7E-06 1.5E-10 80.0 18.2 178 358-555 33-232 (235)
106 KOG3617 WD40 and TPR repeat-co 98.5 0.0017 3.8E-08 69.5 35.5 201 322-551 911-1170(1416)
107 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.8E-12 59.0 3.8 33 151-183 2-34 (34)
108 PRK10370 formate-dependent nit 98.5 1.1E-05 2.4E-10 75.3 17.6 147 396-556 23-174 (198)
109 PF12854 PPR_1: PPR repeat 98.5 2.7E-07 5.9E-12 58.0 4.4 34 251-284 1-34 (34)
110 cd05804 StaR_like StaR_like; a 98.4 0.00035 7.5E-09 72.8 30.2 20 502-521 317-336 (355)
111 KOG4340 Uncharacterized conser 98.4 4.1E-05 9E-10 72.0 20.1 311 217-551 5-335 (459)
112 KOG1128 Uncharacterized conser 98.4 9.4E-06 2E-10 85.5 17.2 219 253-521 394-616 (777)
113 PRK15359 type III secretion sy 98.4 6.3E-06 1.4E-10 72.8 13.8 121 410-537 14-137 (144)
114 PLN02789 farnesyltranstransfer 98.4 5.4E-05 1.2E-09 76.0 21.7 178 373-554 87-301 (320)
115 PRK15363 pathogenicity island 98.4 8.8E-06 1.9E-10 70.6 12.8 97 459-555 34-132 (157)
116 PRK15359 type III secretion sy 98.4 5.3E-06 1.2E-10 73.2 11.7 99 456-556 22-122 (144)
117 KOG0624 dsRNA-activated protei 98.3 0.0017 3.6E-08 62.7 28.1 330 191-559 42-398 (504)
118 KOG1125 TPR repeat-containing 98.3 1.7E-05 3.6E-10 81.6 15.9 214 233-451 296-525 (579)
119 KOG1128 Uncharacterized conser 98.3 2.2E-05 4.9E-10 82.7 15.8 189 353-556 393-583 (777)
120 KOG1070 rRNA processing protei 98.3 0.00013 2.9E-09 82.1 21.8 227 324-551 1459-1696(1710)
121 PRK10370 formate-dependent nit 98.2 5.9E-05 1.3E-09 70.5 16.1 152 365-529 23-181 (198)
122 COG5010 TadD Flp pilus assembl 98.2 9.3E-05 2E-09 69.0 17.0 136 420-557 62-199 (257)
123 TIGR03302 OM_YfiO outer membra 98.2 4.8E-05 1E-09 74.0 16.1 182 321-523 31-234 (235)
124 PRK15179 Vi polysaccharide bio 98.2 6.7E-05 1.5E-09 83.1 18.6 138 388-530 85-226 (694)
125 KOG2053 Mitochondrial inherita 98.1 0.022 4.8E-07 62.3 38.5 65 495-559 439-506 (932)
126 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 8.9E-11 53.5 4.5 34 390-423 1-34 (35)
127 TIGR00756 PPR pentatricopeptid 98.1 4.8E-06 1E-10 53.2 4.4 35 188-222 1-35 (35)
128 PRK15179 Vi polysaccharide bio 98.1 0.00037 7.9E-09 77.4 21.5 143 353-499 81-229 (694)
129 TIGR02552 LcrH_SycD type III s 98.1 4.8E-05 1E-09 66.6 11.6 101 456-556 12-115 (135)
130 PRK14720 transcript cleavage f 98.1 0.00049 1.1E-08 77.1 21.6 45 493-537 224-268 (906)
131 PLN02789 farnesyltranstransfer 98.1 0.00028 6.1E-09 70.9 18.1 183 368-554 47-249 (320)
132 COG5010 TadD Flp pilus assembl 98.1 0.00035 7.5E-09 65.3 17.0 152 395-550 72-226 (257)
133 COG4783 Putative Zn-dependent 98.0 0.00043 9.3E-09 70.3 18.9 115 436-552 318-434 (484)
134 KOG3081 Vesicle coat complex C 98.0 0.0026 5.6E-08 59.6 22.2 175 344-525 94-275 (299)
135 KOG1914 mRNA cleavage and poly 98.0 0.03 6.5E-07 57.8 34.2 428 120-552 19-536 (656)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00013 2.8E-09 74.8 14.1 123 426-553 171-295 (395)
137 COG4783 Putative Zn-dependent 98.0 0.00069 1.5E-08 68.8 18.7 144 391-556 308-455 (484)
138 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 50.5 4.5 33 390-422 2-34 (34)
139 TIGR02552 LcrH_SycD type III s 97.9 0.0002 4.4E-09 62.6 13.2 113 411-527 5-120 (135)
140 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.4E-10 50.4 4.3 34 187-220 1-34 (34)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00022 4.7E-09 73.2 13.7 113 69-183 183-295 (395)
142 KOG2053 Mitochondrial inherita 97.8 0.088 1.9E-06 57.9 35.3 181 69-252 57-256 (932)
143 PRK14720 transcript cleavage f 97.8 0.0046 1E-07 69.6 23.3 147 223-400 117-268 (906)
144 cd00189 TPR Tetratricopeptide 97.8 0.00027 5.8E-09 56.8 10.2 93 463-555 3-97 (100)
145 PF13414 TPR_11: TPR repeat; P 97.7 8.2E-05 1.8E-09 56.2 6.2 64 491-554 2-66 (69)
146 KOG2041 WD40 repeat protein [G 97.7 0.049 1.1E-06 57.8 27.6 147 365-522 930-1087(1189)
147 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.8E-10 47.0 3.5 31 390-420 1-31 (31)
148 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 1E-09 47.0 3.5 31 188-218 1-31 (31)
149 PF12895 Apc3: Anaphase-promot 97.7 4.9E-05 1.1E-09 60.1 4.4 78 473-551 2-83 (84)
150 PF09976 TPR_21: Tetratricopep 97.7 0.0011 2.5E-08 58.6 13.4 114 437-551 24-143 (145)
151 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00061 1.3E-08 57.9 11.1 94 462-555 4-105 (119)
152 PLN03088 SGT1, suppressor of 97.6 0.00073 1.6E-08 69.6 13.1 86 469-554 11-98 (356)
153 KOG3060 Uncharacterized conser 97.6 0.0047 1E-07 57.5 16.1 182 371-556 25-221 (289)
154 PF09976 TPR_21: Tetratricopep 97.5 0.0035 7.6E-08 55.5 14.7 123 392-518 15-144 (145)
155 PRK10153 DNA-binding transcrip 97.5 0.0033 7.2E-08 67.7 17.2 140 386-556 334-483 (517)
156 PF13432 TPR_16: Tetratricopep 97.5 0.00022 4.8E-09 53.1 5.9 58 498-555 3-60 (65)
157 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0012 2.6E-08 56.1 11.0 102 427-528 5-112 (119)
158 KOG3060 Uncharacterized conser 97.5 0.011 2.3E-07 55.1 17.0 174 354-530 47-229 (289)
159 PF04840 Vps16_C: Vps16, C-ter 97.5 0.14 3.1E-06 51.4 28.1 118 365-502 184-301 (319)
160 KOG0553 TPR repeat-containing 97.5 0.00065 1.4E-08 64.8 9.4 91 433-526 90-183 (304)
161 PRK02603 photosystem I assembl 97.4 0.0035 7.6E-08 57.4 13.5 130 388-541 34-166 (172)
162 PRK02603 photosystem I assembl 97.4 0.0017 3.6E-08 59.5 11.2 82 460-541 35-121 (172)
163 CHL00033 ycf3 photosystem I as 97.4 0.0015 3.3E-08 59.5 10.9 95 459-553 34-140 (168)
164 PF05843 Suf: Suppressor of fo 97.3 0.005 1.1E-07 61.1 14.4 133 390-525 2-140 (280)
165 PRK15331 chaperone protein Sic 97.3 0.0055 1.2E-07 53.7 12.6 91 464-554 41-133 (165)
166 KOG3081 Vesicle coat complex C 97.3 0.025 5.3E-07 53.2 17.4 148 396-553 115-269 (299)
167 cd00189 TPR Tetratricopeptide 97.3 0.0025 5.4E-08 51.0 10.0 58 392-451 3-61 (100)
168 PLN03088 SGT1, suppressor of 97.3 0.0034 7.4E-08 64.7 12.7 100 434-535 12-113 (356)
169 PF13371 TPR_9: Tetratricopept 97.2 0.001 2.2E-08 50.8 6.7 58 499-556 2-59 (73)
170 PF14559 TPR_19: Tetratricopep 97.2 0.00041 9E-09 52.1 4.3 53 503-555 2-54 (68)
171 KOG0553 TPR repeat-containing 97.2 0.0028 6E-08 60.6 10.3 98 397-499 89-189 (304)
172 PF13432 TPR_16: Tetratricopep 97.2 0.001 2.2E-08 49.5 6.0 61 466-526 3-65 (65)
173 PF04840 Vps16_C: Vps16, C-ter 97.2 0.31 6.7E-06 49.1 27.2 107 259-381 179-285 (319)
174 KOG0550 Molecular chaperone (D 97.2 0.016 3.5E-07 57.8 15.2 154 397-556 177-351 (486)
175 COG4700 Uncharacterized protei 97.1 0.072 1.6E-06 47.3 17.1 132 420-554 85-221 (251)
176 COG4235 Cytochrome c biogenesi 97.0 0.0063 1.4E-07 58.6 11.0 105 457-561 153-262 (287)
177 PF13431 TPR_17: Tetratricopep 97.0 0.00045 9.7E-09 43.4 2.2 33 515-547 2-34 (34)
178 PF08579 RPM2: Mitochondrial r 97.0 0.0055 1.2E-07 49.6 8.7 80 89-168 28-116 (120)
179 PF12895 Apc3: Anaphase-promot 97.0 0.0016 3.5E-08 51.3 5.8 80 402-485 2-83 (84)
180 PF14938 SNAP: Soluble NSF att 97.0 0.059 1.3E-06 53.7 17.9 54 397-451 122-182 (282)
181 PF10037 MRP-S27: Mitochondria 97.0 0.014 3E-07 60.4 13.4 80 191-270 107-186 (429)
182 PF14938 SNAP: Soluble NSF att 96.9 0.52 1.1E-05 47.0 26.1 95 392-486 158-263 (282)
183 KOG2796 Uncharacterized conser 96.9 0.1 2.2E-06 49.0 17.0 170 260-431 139-326 (366)
184 KOG1130 Predicted G-alpha GTPa 96.9 0.007 1.5E-07 60.0 10.1 129 426-554 197-343 (639)
185 PRK10153 DNA-binding transcrip 96.9 0.03 6.5E-07 60.4 15.7 49 508-556 400-450 (517)
186 KOG1538 Uncharacterized conser 96.9 0.057 1.2E-06 56.8 16.7 167 304-492 616-806 (1081)
187 PRK10866 outer membrane biogen 96.8 0.087 1.9E-06 51.0 17.2 171 364-553 38-239 (243)
188 PF05843 Suf: Suppressor of fo 96.8 0.013 2.9E-07 58.1 11.9 129 425-555 2-136 (280)
189 PF13414 TPR_11: TPR repeat; P 96.8 0.0022 4.8E-08 48.3 4.9 65 459-523 2-69 (69)
190 KOG2280 Vacuolar assembly/sort 96.8 1.1 2.4E-05 48.7 30.4 355 96-483 399-793 (829)
191 PF08579 RPM2: Mitochondrial r 96.8 0.019 4.1E-07 46.5 9.9 78 192-269 30-116 (120)
192 PRK15363 pathogenicity island 96.8 0.028 6E-07 49.2 11.7 87 394-485 40-128 (157)
193 PF10037 MRP-S27: Mitochondria 96.8 0.013 2.9E-07 60.5 11.5 120 116-235 61-186 (429)
194 PF12688 TPR_5: Tetratrico pep 96.7 0.036 7.9E-07 46.6 12.0 92 395-486 7-101 (120)
195 COG3898 Uncharacterized membra 96.7 0.75 1.6E-05 46.0 26.2 210 335-555 166-392 (531)
196 PRK10866 outer membrane biogen 96.7 0.26 5.7E-06 47.7 19.6 56 263-318 38-99 (243)
197 PRK10803 tol-pal system protei 96.7 0.012 2.6E-07 57.4 10.3 93 463-555 146-246 (263)
198 PF14559 TPR_19: Tetratricopep 96.7 0.0022 4.8E-08 48.1 4.2 48 437-486 4-51 (68)
199 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.86 1.9E-05 46.4 30.8 143 35-184 27-189 (660)
200 PF06239 ECSIT: Evolutionarily 96.7 0.015 3.2E-07 53.3 9.8 97 378-475 34-153 (228)
201 KOG2041 WD40 repeat protein [G 96.7 1.2 2.6E-05 47.8 29.9 374 118-552 689-1083(1189)
202 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0074 1.6E-07 61.8 8.7 65 491-555 74-141 (453)
203 KOG2796 Uncharacterized conser 96.7 0.09 1.9E-06 49.4 14.8 182 37-227 125-324 (366)
204 PF12688 TPR_5: Tetratrico pep 96.6 0.027 6E-07 47.3 10.6 87 467-553 8-102 (120)
205 COG4700 Uncharacterized protei 96.5 0.057 1.2E-06 47.9 12.1 104 452-555 81-189 (251)
206 PF06239 ECSIT: Evolutionarily 96.5 0.016 3.4E-07 53.1 9.0 36 136-171 118-153 (228)
207 KOG1538 Uncharacterized conser 96.5 0.26 5.7E-06 52.1 18.5 200 123-386 600-801 (1081)
208 CHL00033 ycf3 photosystem I as 96.5 0.04 8.6E-07 50.1 11.7 80 87-167 36-117 (168)
209 COG3898 Uncharacterized membra 96.5 1.1 2.4E-05 44.9 26.6 123 89-215 85-216 (531)
210 PF13428 TPR_14: Tetratricopep 96.4 0.0049 1.1E-07 41.5 3.9 42 493-534 2-43 (44)
211 PF13281 DUF4071: Domain of un 96.3 0.23 5.1E-06 50.4 16.7 155 367-524 150-337 (374)
212 PF13371 TPR_9: Tetratricopept 96.3 0.013 2.9E-07 44.5 6.1 62 467-528 2-65 (73)
213 KOG1258 mRNA processing protei 96.2 2.2 4.7E-05 45.5 29.3 410 84-541 43-490 (577)
214 KOG0543 FKBP-type peptidyl-pro 96.2 0.041 8.8E-07 55.2 10.5 64 492-555 257-320 (397)
215 PF03704 BTAD: Bacterial trans 96.2 0.088 1.9E-06 46.5 11.9 62 493-554 63-124 (146)
216 PF13424 TPR_12: Tetratricopep 96.1 0.0095 2.1E-07 46.1 4.7 62 493-554 6-74 (78)
217 PRK10803 tol-pal system protei 96.1 0.084 1.8E-06 51.6 11.9 91 436-526 155-251 (263)
218 PF09205 DUF1955: Domain of un 96.0 0.4 8.7E-06 40.1 13.7 140 400-558 13-152 (161)
219 KOG2066 Vacuolar assembly/sort 96.0 2.3 5E-05 46.6 22.9 100 130-234 365-467 (846)
220 KOG1130 Predicted G-alpha GTPa 95.8 0.079 1.7E-06 52.9 10.5 255 196-451 26-342 (639)
221 PF07079 DUF1347: Protein of u 95.8 2.7 5.8E-05 43.2 35.3 72 480-552 444-521 (549)
222 PF13424 TPR_12: Tetratricopep 95.7 0.016 3.5E-07 44.8 4.4 60 462-521 7-75 (78)
223 PF13525 YfiO: Outer membrane 95.6 1 2.2E-05 42.3 16.9 49 498-546 147-198 (203)
224 PF12921 ATP13: Mitochondrial 95.5 0.13 2.8E-06 43.8 9.6 49 420-468 48-96 (126)
225 COG4235 Cytochrome c biogenesi 95.4 0.2 4.4E-06 48.5 11.3 30 388-417 155-184 (287)
226 KOG0550 Molecular chaperone (D 95.4 0.43 9.3E-06 48.1 13.6 153 366-524 177-353 (486)
227 COG0457 NrfG FOG: TPR repeat [ 95.3 2.6 5.7E-05 39.7 25.8 193 359-555 60-265 (291)
228 COG1729 Uncharacterized protei 95.3 0.12 2.7E-06 49.3 9.3 90 463-555 145-244 (262)
229 KOG4555 TPR repeat-containing 95.2 0.17 3.7E-06 42.1 8.6 90 468-557 51-146 (175)
230 KOG2114 Vacuolar assembly/sort 95.2 6.6 0.00014 43.6 30.3 117 56-183 338-458 (933)
231 PF12921 ATP13: Mitochondrial 95.1 0.21 4.7E-06 42.4 9.6 49 455-503 47-99 (126)
232 PF13512 TPR_18: Tetratricopep 95.1 0.52 1.1E-05 40.6 11.7 60 468-527 18-82 (142)
233 KOG0543 FKBP-type peptidyl-pro 94.9 0.33 7.1E-06 49.0 11.4 95 461-555 258-355 (397)
234 KOG3941 Intermediate in Toll s 94.8 0.22 4.9E-06 47.3 9.4 101 376-477 52-175 (406)
235 PRK11906 transcriptional regul 94.8 1.7 3.7E-05 45.2 16.5 157 390-550 252-431 (458)
236 PF07079 DUF1347: Protein of u 94.8 5.8 0.00013 40.9 35.4 247 54-316 48-326 (549)
237 PF04184 ST7: ST7 protein; In 94.7 1.4 3E-05 45.9 15.4 151 399-563 178-332 (539)
238 COG5107 RNA14 Pre-mRNA 3'-end 94.6 6.2 0.00013 40.5 27.8 91 76-169 30-122 (660)
239 PF13525 YfiO: Outer membrane 94.6 0.78 1.7E-05 43.1 13.0 142 394-555 10-170 (203)
240 KOG3941 Intermediate in Toll s 94.6 0.19 4.1E-06 47.8 8.3 115 69-183 48-186 (406)
241 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.21 4.5E-06 51.6 9.2 62 460-521 75-141 (453)
242 KOG1585 Protein required for f 94.5 2.8 6.1E-05 39.4 15.4 86 463-549 153-250 (308)
243 PRK11906 transcriptional regul 94.3 0.63 1.4E-05 48.2 12.3 117 439-555 273-401 (458)
244 smart00299 CLH Clathrin heavy 94.3 2.7 5.8E-05 36.6 15.0 85 125-213 11-95 (140)
245 PF00515 TPR_1: Tetratricopept 94.2 0.089 1.9E-06 32.8 3.8 32 493-524 2-33 (34)
246 COG0457 NrfG FOG: TPR repeat [ 94.1 5.2 0.00011 37.6 24.7 160 361-524 98-268 (291)
247 PF04053 Coatomer_WDAD: Coatom 94.1 0.5 1.1E-05 49.9 11.3 134 397-556 269-403 (443)
248 PF04097 Nic96: Nup93/Nic96; 94.0 2.2 4.7E-05 47.6 16.7 49 85-135 111-159 (613)
249 PF07719 TPR_2: Tetratricopept 93.9 0.15 3.3E-06 31.6 4.5 32 494-525 3-34 (34)
250 KOG1920 IkappaB kinase complex 93.8 5.5 0.00012 46.0 19.0 126 372-518 894-1025(1265)
251 COG1729 Uncharacterized protei 93.8 0.49 1.1E-05 45.3 9.5 93 391-486 144-241 (262)
252 KOG1941 Acetylcholine receptor 93.7 1.1 2.3E-05 44.4 11.7 160 392-551 86-271 (518)
253 COG3118 Thioredoxin domain-con 93.6 3 6.6E-05 40.5 14.5 121 433-556 143-266 (304)
254 PF03704 BTAD: Bacterial trans 93.5 0.58 1.2E-05 41.3 9.3 69 392-462 65-138 (146)
255 PF04053 Coatomer_WDAD: Coatom 93.3 2 4.3E-05 45.6 14.2 155 96-282 271-427 (443)
256 smart00299 CLH Clathrin heavy 93.1 5.5 0.00012 34.6 15.0 86 393-487 11-96 (140)
257 PF13281 DUF4071: Domain of un 93.1 8.6 0.00019 39.4 17.6 73 160-232 145-227 (374)
258 COG3118 Thioredoxin domain-con 92.8 7.8 0.00017 37.8 15.9 172 377-552 122-299 (304)
259 PF13512 TPR_18: Tetratricopep 92.8 2.8 6E-05 36.2 11.8 19 508-526 115-133 (142)
260 KOG2610 Uncharacterized conser 92.8 2.8 6.2E-05 41.2 13.0 151 371-526 116-283 (491)
261 PF10300 DUF3808: Protein of u 92.7 17 0.00037 39.2 22.9 158 191-351 192-375 (468)
262 PF10345 Cohesin_load: Cohesin 92.5 21 0.00046 40.0 34.7 207 37-249 15-252 (608)
263 PF04184 ST7: ST7 protein; In 92.4 11 0.00024 39.5 17.3 55 395-450 265-321 (539)
264 PF10300 DUF3808: Protein of u 92.3 5.7 0.00012 42.7 16.4 115 437-554 246-375 (468)
265 KOG2610 Uncharacterized conser 92.2 1.1 2.4E-05 43.8 9.5 159 401-562 115-283 (491)
266 COG4785 NlpI Lipoprotein NlpI, 92.0 4.8 0.0001 37.2 12.7 178 372-557 79-268 (297)
267 PRK09687 putative lyase; Provi 91.9 14 0.00031 36.6 26.1 80 255-336 35-118 (280)
268 COG4105 ComL DNA uptake lipopr 91.8 12 0.00027 35.7 19.4 58 498-555 173-233 (254)
269 PF08631 SPO22: Meiosis protei 91.8 14 0.00031 36.5 22.6 17 502-518 256-272 (278)
270 COG4105 ComL DNA uptake lipopr 91.6 13 0.00028 35.6 17.5 141 391-555 36-196 (254)
271 PF13176 TPR_7: Tetratricopept 91.4 0.39 8.4E-06 30.4 3.9 26 528-553 1-26 (36)
272 PRK09687 putative lyase; Provi 91.2 17 0.00036 36.1 25.0 132 191-334 146-278 (280)
273 KOG2280 Vacuolar assembly/sort 91.1 28 0.00061 38.5 32.7 117 419-551 679-795 (829)
274 PF02259 FAT: FAT domain; Int 90.7 22 0.00047 36.6 19.0 149 387-538 144-304 (352)
275 PRK15331 chaperone protein Sic 90.6 2 4.3E-05 38.0 8.7 83 97-181 48-130 (165)
276 PF09205 DUF1955: Domain of un 90.3 10 0.00022 32.1 12.9 64 290-354 88-151 (161)
277 PF13181 TPR_8: Tetratricopept 90.0 0.54 1.2E-05 29.1 3.6 31 494-524 3-33 (34)
278 PF13170 DUF4003: Protein of u 90.0 6.3 0.00014 39.3 12.8 60 204-263 160-223 (297)
279 KOG4234 TPR repeat-containing 89.9 1.1 2.3E-05 40.6 6.5 89 469-557 104-199 (271)
280 COG3629 DnrI DNA-binding trans 89.5 1.6 3.5E-05 42.6 8.0 61 494-554 155-215 (280)
281 PF13176 TPR_7: Tetratricopept 89.4 0.63 1.4E-05 29.4 3.6 28 494-521 1-28 (36)
282 KOG0890 Protein kinase of the 89.3 73 0.0016 40.5 31.1 63 492-556 1670-1732(2382)
283 KOG4555 TPR repeat-containing 89.3 2.4 5.1E-05 35.6 7.6 87 434-523 53-146 (175)
284 PF07035 Mic1: Colon cancer-as 88.8 17 0.00037 32.6 13.4 134 207-352 14-149 (167)
285 PF09613 HrpB1_HrpK: Bacterial 88.8 14 0.00031 32.7 12.5 91 430-523 16-108 (160)
286 KOG2114 Vacuolar assembly/sort 88.8 17 0.00037 40.6 15.6 140 365-518 375-516 (933)
287 PF00515 TPR_1: Tetratricopept 88.1 1.1 2.4E-05 27.7 4.1 32 390-423 2-33 (34)
288 PF09613 HrpB1_HrpK: Bacterial 88.0 2.3 5E-05 37.4 7.3 54 503-556 21-74 (160)
289 TIGR02561 HrpB1_HrpK type III 87.9 2.3 4.9E-05 36.9 6.9 55 503-557 21-75 (153)
290 COG3629 DnrI DNA-binding trans 87.7 4 8.6E-05 39.9 9.4 76 257-332 153-236 (280)
291 PF13428 TPR_14: Tetratricopep 87.6 1.6 3.5E-05 29.0 4.9 33 391-425 3-35 (44)
292 PF02259 FAT: FAT domain; Int 87.5 15 0.00033 37.7 14.7 66 490-555 144-213 (352)
293 KOG1585 Protein required for f 87.2 27 0.00059 33.1 17.1 104 89-214 34-137 (308)
294 KOG4570 Uncharacterized conser 87.1 2.1 4.6E-05 41.7 6.9 100 47-151 59-165 (418)
295 COG3947 Response regulator con 86.9 32 0.0007 33.5 14.9 58 497-554 284-341 (361)
296 PF10602 RPN7: 26S proteasome 86.9 7.4 0.00016 35.5 10.3 94 391-486 38-139 (177)
297 PF08631 SPO22: Meiosis protei 86.7 35 0.00076 33.8 21.3 60 258-317 85-150 (278)
298 KOG1258 mRNA processing protei 86.4 52 0.0011 35.5 26.8 119 426-546 299-420 (577)
299 KOG1920 IkappaB kinase complex 85.8 81 0.0018 37.1 20.5 107 369-486 919-1025(1265)
300 PF07719 TPR_2: Tetratricopept 84.1 2.3 5E-05 26.0 4.1 31 391-423 3-33 (34)
301 KOG1464 COP9 signalosome, subu 84.0 42 0.0009 32.3 15.5 237 271-513 41-324 (440)
302 PRK11619 lytic murein transgly 83.8 82 0.0018 35.5 30.7 115 402-519 254-373 (644)
303 PF14853 Fis1_TPR_C: Fis1 C-te 83.8 8 0.00017 27.0 6.8 50 529-604 4-53 (53)
304 COG4649 Uncharacterized protei 83.7 20 0.00044 32.0 10.7 21 263-283 173-193 (221)
305 KOG1941 Acetylcholine receptor 83.6 46 0.00099 33.6 14.2 123 328-450 127-272 (518)
306 KOG4648 Uncharacterized conser 83.5 2.4 5.3E-05 41.7 5.6 109 431-547 104-216 (536)
307 KOG3364 Membrane protein invol 83.1 6.7 0.00015 33.3 7.2 48 507-554 50-99 (149)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 7.6 0.00017 30.8 6.9 63 404-468 22-84 (103)
309 PF10602 RPN7: 26S proteasome 82.3 14 0.00029 33.8 9.9 26 159-184 39-64 (177)
310 KOG1586 Protein required for f 82.2 46 0.00099 31.5 13.0 21 503-523 165-185 (288)
311 PF02284 COX5A: Cytochrome c o 82.2 8.7 0.00019 30.8 7.2 61 406-468 27-87 (108)
312 PRK13800 putative oxidoreducta 82.2 1.2E+02 0.0025 36.1 28.0 47 49-98 632-678 (897)
313 PF13374 TPR_10: Tetratricopep 82.1 2.9 6.3E-05 27.0 4.2 26 495-520 5-30 (42)
314 PF13374 TPR_10: Tetratricopep 81.8 2.7 5.8E-05 27.2 3.9 28 527-554 3-30 (42)
315 PF14853 Fis1_TPR_C: Fis1 C-te 81.2 5.9 0.00013 27.7 5.4 29 498-526 7-35 (53)
316 PF07035 Mic1: Colon cancer-as 81.2 41 0.00088 30.2 15.1 23 190-212 92-114 (167)
317 PF00637 Clathrin: Region in C 80.9 2.2 4.8E-05 37.3 4.2 47 93-139 14-60 (143)
318 PF00637 Clathrin: Region in C 80.3 1.1 2.4E-05 39.3 2.0 86 126-214 12-97 (143)
319 PRK15180 Vi polysaccharide bio 80.1 5.5 0.00012 41.2 6.9 121 401-525 301-424 (831)
320 PF07721 TPR_4: Tetratricopept 80.0 2.6 5.6E-05 24.3 2.8 23 528-550 3-25 (26)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 79.1 11 0.00025 29.8 6.8 59 104-164 25-84 (103)
322 COG1747 Uncharacterized N-term 79.1 93 0.002 33.1 19.3 157 362-525 70-238 (711)
323 TIGR02561 HrpB1_HrpK type III 79.0 42 0.00091 29.3 10.9 20 267-286 54-73 (153)
324 smart00028 TPR Tetratricopepti 78.6 3.7 7.9E-05 24.0 3.6 29 495-523 4-32 (34)
325 PF13174 TPR_6: Tetratricopept 78.5 3 6.6E-05 25.2 3.1 28 528-555 2-29 (33)
326 PF13174 TPR_6: Tetratricopept 78.5 3.6 7.8E-05 24.9 3.4 29 497-525 5-33 (33)
327 PF13181 TPR_8: Tetratricopept 78.3 4.8 0.0001 24.6 4.0 28 527-554 2-29 (34)
328 PF11207 DUF2989: Protein of u 78.1 11 0.00024 34.6 7.7 74 472-546 119-198 (203)
329 PF13170 DUF4003: Protein of u 77.9 79 0.0017 31.6 15.3 63 405-467 78-148 (297)
330 PF13431 TPR_17: Tetratricopep 77.9 3.3 7.1E-05 25.8 3.0 30 146-176 4-33 (34)
331 PF02284 COX5A: Cytochrome c o 76.7 14 0.0003 29.7 6.8 60 104-164 28-87 (108)
332 COG4649 Uncharacterized protei 76.3 58 0.0013 29.2 13.6 121 399-520 68-195 (221)
333 COG1747 Uncharacterized N-term 76.3 1.1E+02 0.0024 32.5 17.6 195 54-266 44-248 (711)
334 TIGR02508 type_III_yscG type I 76.3 39 0.00084 27.2 9.4 61 264-327 46-106 (115)
335 KOG0276 Vesicle coat complex C 76.1 47 0.001 35.9 12.3 147 371-551 599-746 (794)
336 PRK15180 Vi polysaccharide bio 75.9 20 0.00044 37.2 9.5 139 436-578 301-441 (831)
337 PRK13800 putative oxidoreducta 75.8 1.8E+02 0.0038 34.6 24.3 255 278-554 625-880 (897)
338 PRK10941 hypothetical protein; 75.6 12 0.00027 36.6 7.8 61 495-555 184-244 (269)
339 KOG4570 Uncharacterized conser 75.3 25 0.00054 34.6 9.4 98 252-353 59-165 (418)
340 COG4455 ImpE Protein of avirul 75.0 12 0.00026 34.8 6.9 63 464-526 5-69 (273)
341 PF04910 Tcf25: Transcriptiona 75.0 47 0.001 34.3 12.3 96 459-554 39-167 (360)
342 PF04097 Nic96: Nup93/Nic96; 73.7 86 0.0019 35.2 14.9 66 258-324 113-188 (613)
343 KOG4648 Uncharacterized conser 72.5 12 0.00026 37.1 6.7 112 366-485 105-220 (536)
344 KOG2066 Vacuolar assembly/sort 71.9 1.8E+02 0.0038 32.8 24.7 46 69-114 370-420 (846)
345 TIGR02508 type_III_yscG type I 71.5 44 0.00096 26.9 8.3 86 136-225 20-105 (115)
346 KOG1586 Protein required for f 70.6 99 0.0021 29.3 13.6 21 334-354 165-185 (288)
347 PRK11619 lytic murein transgly 70.3 1.9E+02 0.0042 32.6 37.3 241 301-559 254-509 (644)
348 PF13929 mRNA_stabil: mRNA sta 70.1 44 0.00095 32.8 9.9 105 405-509 144-255 (292)
349 PF11207 DUF2989: Protein of u 70.0 30 0.00065 31.9 8.3 72 103-175 123-197 (203)
350 PF07721 TPR_4: Tetratricopept 69.7 8.5 0.00018 22.1 3.2 21 464-484 5-25 (26)
351 PF14561 TPR_20: Tetratricopep 69.3 12 0.00026 29.6 5.1 45 512-556 8-52 (90)
352 KOG4279 Serine/threonine prote 69.1 45 0.00097 36.9 10.5 182 290-525 203-399 (1226)
353 PF06552 TOM20_plant: Plant sp 68.8 20 0.00043 32.4 6.7 46 508-553 51-100 (186)
354 KOG0376 Serine-threonine phosp 68.5 12 0.00025 39.2 6.0 85 470-554 14-100 (476)
355 KOG0890 Protein kinase of the 68.3 3.6E+02 0.0078 34.9 28.7 156 130-294 1392-1552(2382)
356 PRK12798 chemotaxis protein; R 68.2 1.6E+02 0.0034 30.7 21.4 180 371-553 125-322 (421)
357 TIGR03504 FimV_Cterm FimV C-te 67.0 12 0.00026 24.9 3.9 27 530-556 3-29 (44)
358 PF09477 Type_III_YscG: Bacter 64.9 76 0.0017 25.9 9.7 86 237-326 21-106 (116)
359 COG2976 Uncharacterized protei 64.6 1.2E+02 0.0026 28.0 14.0 113 407-524 70-191 (207)
360 KOG0276 Vesicle coat complex C 63.9 63 0.0014 35.0 10.2 100 166-282 647-746 (794)
361 PF09986 DUF2225: Uncharacteri 63.8 40 0.00086 31.8 8.3 63 494-556 120-195 (214)
362 PF13762 MNE1: Mitochondrial s 63.7 70 0.0015 27.9 8.9 51 185-235 77-128 (145)
363 KOG2396 HAT (Half-A-TPR) repea 63.5 2.1E+02 0.0046 30.5 30.8 102 420-524 455-563 (568)
364 KOG4234 TPR repeat-containing 62.7 51 0.0011 30.3 8.1 59 465-525 139-201 (271)
365 KOG1308 Hsp70-interacting prot 62.6 4.3 9.4E-05 40.2 1.6 86 474-559 128-215 (377)
366 PF04190 DUF410: Protein of un 62.5 1.6E+02 0.0035 28.8 16.0 158 168-351 2-169 (260)
367 PRK13342 recombination factor 61.9 2.1E+02 0.0045 30.3 14.3 44 188-231 228-274 (413)
368 KOG0545 Aryl-hydrocarbon recep 61.8 1.2E+02 0.0026 29.0 10.5 56 500-555 238-293 (329)
369 PF13934 ELYS: Nuclear pore co 60.6 1.4E+02 0.003 28.5 11.4 105 392-505 79-185 (226)
370 KOG4642 Chaperone-dependent E3 59.0 27 0.00058 33.0 5.9 51 502-552 54-104 (284)
371 smart00028 TPR Tetratricopepti 58.8 19 0.00041 20.5 3.7 27 391-417 3-29 (34)
372 smart00386 HAT HAT (Half-A-TPR 58.2 17 0.00036 21.5 3.3 29 506-534 1-29 (33)
373 KOG1550 Extracellular protein 58.0 3E+02 0.0065 30.5 21.7 78 475-555 454-538 (552)
374 PHA02875 ankyrin repeat protei 58.0 2.5E+02 0.0054 29.6 16.4 18 164-181 73-90 (413)
375 PF00244 14-3-3: 14-3-3 protei 57.3 1.9E+02 0.004 27.9 12.0 162 395-557 7-200 (236)
376 KOG2396 HAT (Half-A-TPR) repea 56.8 2.7E+02 0.006 29.7 33.7 239 308-553 302-557 (568)
377 PF10579 Rapsyn_N: Rapsyn N-te 56.5 24 0.00052 26.9 4.2 45 504-548 18-65 (80)
378 KOG3807 Predicted membrane pro 55.2 1.1E+02 0.0023 30.6 9.5 112 395-526 281-396 (556)
379 PF09670 Cas_Cas02710: CRISPR- 55.0 1.7E+02 0.0036 30.6 11.9 122 398-520 140-269 (379)
380 PHA02875 ankyrin repeat protei 55.0 2.8E+02 0.006 29.2 16.4 198 38-257 16-230 (413)
381 PF14863 Alkyl_sulf_dimr: Alky 54.7 49 0.0011 28.8 6.6 64 476-542 57-120 (141)
382 KOG0403 Neoplastic transformat 54.5 2.8E+02 0.0061 29.1 18.5 57 363-419 514-573 (645)
383 PF10579 Rapsyn_N: Rapsyn N-te 54.4 43 0.00093 25.6 5.3 45 402-446 19-65 (80)
384 PF13762 MNE1: Mitochondrial s 54.0 66 0.0014 28.1 7.2 88 44-134 29-128 (145)
385 PF06552 TOM20_plant: Plant sp 53.2 33 0.00072 31.0 5.4 32 405-438 51-83 (186)
386 KOG4077 Cytochrome c oxidase, 52.6 84 0.0018 26.5 7.1 71 407-488 67-137 (149)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 52.4 1E+02 0.0022 26.2 8.2 42 510-551 81-124 (126)
388 PF12862 Apc5: Anaphase-promot 52.3 49 0.0011 26.3 6.0 53 502-554 8-69 (94)
389 PF07163 Pex26: Pex26 protein; 52.1 1.4E+02 0.003 29.2 9.6 88 396-486 90-184 (309)
390 KOG0687 26S proteasome regulat 51.2 2.7E+02 0.0058 28.0 11.9 10 629-638 321-330 (393)
391 PF11768 DUF3312: Protein of u 50.6 1.2E+02 0.0026 32.8 9.8 23 363-385 413-435 (545)
392 TIGR03504 FimV_Cterm FimV C-te 50.5 36 0.00079 22.7 4.0 22 295-316 6-27 (44)
393 KOG1550 Extracellular protein 50.4 3.9E+02 0.0085 29.6 17.5 176 172-353 228-427 (552)
394 PF10366 Vps39_1: Vacuolar sor 49.9 1.1E+02 0.0024 25.2 7.7 27 290-316 41-67 (108)
395 PF07720 TPR_3: Tetratricopept 49.6 42 0.00092 21.2 4.0 30 495-524 4-35 (36)
396 KOG0551 Hsp90 co-chaperone CNS 48.7 73 0.0016 31.9 7.3 92 462-553 83-180 (390)
397 PF11846 DUF3366: Domain of un 47.7 55 0.0012 30.3 6.4 35 489-523 141-175 (193)
398 KOG1464 COP9 signalosome, subu 46.6 2.8E+02 0.0062 26.9 17.2 186 300-485 39-257 (440)
399 PF11846 DUF3366: Domain of un 45.1 75 0.0016 29.4 6.9 51 436-486 120-170 (193)
400 KOG2422 Uncharacterized conser 44.9 3.6E+02 0.0079 29.4 12.1 55 500-554 350-406 (665)
401 KOG0292 Vesicle coat complex C 44.7 30 0.00065 39.0 4.5 115 402-548 606-720 (1202)
402 COG3947 Response regulator con 44.7 3.2E+02 0.007 27.0 13.2 58 259-316 281-341 (361)
403 KOG4642 Chaperone-dependent E3 44.2 2.2E+02 0.0047 27.3 9.2 81 368-450 20-104 (284)
404 PF13934 ELYS: Nuclear pore co 44.1 2.9E+02 0.0063 26.3 11.2 115 371-493 91-205 (226)
405 PF04910 Tcf25: Transcriptiona 42.5 4.1E+02 0.0088 27.5 16.6 88 431-523 110-224 (360)
406 PF11838 ERAP1_C: ERAP1-like C 42.2 3.7E+02 0.0081 27.0 17.5 100 436-535 142-245 (324)
407 PF07163 Pex26: Pex26 protein; 42.1 2.2E+02 0.0049 27.9 9.3 18 194-211 90-107 (309)
408 PF09477 Type_III_YscG: Bacter 42.1 1.9E+02 0.0042 23.7 9.6 82 133-217 18-99 (116)
409 cd08819 CARD_MDA5_2 Caspase ac 41.8 1.4E+02 0.003 23.4 6.5 39 370-409 48-86 (88)
410 KOG4077 Cytochrome c oxidase, 41.4 1.3E+02 0.0028 25.5 6.6 47 205-251 67-113 (149)
411 COG4455 ImpE Protein of avirul 41.4 3.1E+02 0.0068 25.9 11.1 123 392-526 4-139 (273)
412 cd08819 CARD_MDA5_2 Caspase ac 41.4 1.4E+02 0.0029 23.5 6.3 38 168-206 48-85 (88)
413 PF12968 DUF3856: Domain of Un 41.2 1.5E+02 0.0032 24.9 6.8 61 493-553 56-127 (144)
414 PF15469 Sec5: Exocyst complex 41.0 2.4E+02 0.0052 25.7 9.5 24 429-452 91-114 (182)
415 PF11848 DUF3368: Domain of un 40.9 1.1E+02 0.0023 20.8 5.3 34 399-432 12-45 (48)
416 PF14669 Asp_Glu_race_2: Putat 40.9 2.9E+02 0.0064 25.4 13.8 56 227-282 137-206 (233)
417 PF07575 Nucleopor_Nup85: Nup8 40.5 2E+02 0.0043 32.0 10.4 93 187-283 372-464 (566)
418 PRK09169 hypothetical protein; 39.8 1E+03 0.022 31.3 42.2 467 86-552 122-692 (2316)
419 PF11663 Toxin_YhaV: Toxin wit 39.6 34 0.00073 29.2 3.1 34 399-434 105-138 (140)
420 KOG4507 Uncharacterized conser 38.6 78 0.0017 34.2 6.2 97 436-535 619-719 (886)
421 PF11663 Toxin_YhaV: Toxin wit 38.5 44 0.00094 28.5 3.6 31 99-131 108-138 (140)
422 COG5159 RPN6 26S proteasome re 38.3 4E+02 0.0087 26.2 17.7 134 193-326 9-167 (421)
423 KOG1498 26S proteasome regulat 37.9 4.8E+02 0.01 27.0 12.4 171 402-576 25-262 (439)
424 TIGR02270 conserved hypothetic 37.8 5.1E+02 0.011 27.3 24.9 172 92-281 44-215 (410)
425 COG4976 Predicted methyltransf 36.9 72 0.0016 30.1 5.0 50 505-554 8-57 (287)
426 PF11848 DUF3368: Domain of un 36.6 1.2E+02 0.0026 20.6 5.0 33 198-230 13-45 (48)
427 PRK10564 maltose regulon perip 36.6 66 0.0014 31.8 5.1 41 391-431 259-299 (303)
428 PF12862 Apc5: Anaphase-promot 36.3 1.2E+02 0.0026 24.1 5.9 25 498-522 47-71 (94)
429 KOG3824 Huntingtin interacting 36.2 59 0.0013 31.9 4.6 61 470-530 126-188 (472)
430 PF14689 SPOB_a: Sensor_kinase 36.0 61 0.0013 23.5 3.7 25 427-451 26-50 (62)
431 PRK10941 hypothetical protein; 35.7 2.6E+02 0.0056 27.5 9.1 58 393-452 185-243 (269)
432 PF08311 Mad3_BUB1_I: Mad3/BUB 35.6 2.5E+02 0.0054 23.8 8.0 42 407-448 81-123 (126)
433 KOG0686 COP9 signalosome, subu 35.1 5.4E+02 0.012 26.8 12.6 90 360-451 152-256 (466)
434 PF10366 Vps39_1: Vacuolar sor 34.7 2.1E+02 0.0045 23.5 7.1 28 188-215 40-67 (108)
435 PF14689 SPOB_a: Sensor_kinase 33.8 64 0.0014 23.4 3.5 26 392-417 26-51 (62)
436 COG2976 Uncharacterized protei 33.6 3.9E+02 0.0085 24.8 14.7 57 262-318 131-189 (207)
437 PRK13342 recombination factor 33.4 6E+02 0.013 26.8 17.5 116 204-337 154-279 (413)
438 PF14669 Asp_Glu_race_2: Putat 33.4 3.9E+02 0.0085 24.7 13.2 58 428-486 136-207 (233)
439 COG4785 NlpI Lipoprotein NlpI, 33.2 4.2E+02 0.0092 25.0 16.4 60 156-215 99-161 (297)
440 PRK10564 maltose regulon perip 33.0 76 0.0016 31.4 4.8 37 189-225 259-295 (303)
441 PF13929 mRNA_stabil: mRNA sta 32.7 5E+02 0.011 25.7 18.0 115 372-486 142-264 (292)
442 PHA03100 ankyrin repeat protei 32.5 6.5E+02 0.014 27.0 14.2 12 69-80 46-57 (480)
443 COG4976 Predicted methyltransf 32.4 65 0.0014 30.4 4.0 56 470-525 5-62 (287)
444 PF06957 COPI_C: Coatomer (COP 31.7 1.9E+02 0.0041 30.5 7.7 44 482-525 288-333 (422)
445 PF08967 DUF1884: Domain of un 31.2 52 0.0011 25.1 2.6 27 585-611 7-33 (85)
446 COG5159 RPN6 26S proteasome re 31.1 5.3E+02 0.011 25.5 14.0 159 397-555 11-194 (421)
447 PF04034 DUF367: Domain of unk 31.1 3.2E+02 0.007 23.2 7.5 57 460-516 66-123 (127)
448 PF07575 Nucleopor_Nup85: Nup8 30.9 1.3E+02 0.0028 33.4 7.0 93 86-182 372-464 (566)
449 PF14561 TPR_20: Tetratricopep 30.7 2.7E+02 0.0058 22.0 7.8 62 491-552 21-85 (90)
450 COG0735 Fur Fe2+/Zn2+ uptake r 30.7 2.3E+02 0.005 24.8 7.1 48 392-439 23-70 (145)
451 KOG2063 Vacuolar assembly/sort 30.3 9.5E+02 0.021 28.2 17.8 209 291-536 507-742 (877)
452 PHA02537 M terminase endonucle 29.7 4.8E+02 0.01 24.9 9.4 25 400-424 94-119 (230)
453 PRK11639 zinc uptake transcrip 29.1 1.9E+02 0.0042 26.0 6.6 59 416-476 18-76 (169)
454 KOG2659 LisH motif-containing 28.8 3.9E+02 0.0085 25.4 8.5 91 392-485 29-128 (228)
455 PF11817 Foie-gras_1: Foie gra 28.2 1.6E+02 0.0034 28.6 6.3 17 434-450 188-204 (247)
456 PF11525 CopK: Copper resistan 28.2 22 0.00049 25.9 0.3 21 671-691 8-28 (73)
457 PF11768 DUF3312: Protein of u 27.6 2.9E+02 0.0063 29.9 8.3 57 56-115 412-473 (545)
458 cd08326 CARD_CASP9 Caspase act 27.5 2E+02 0.0043 22.4 5.4 62 37-105 19-80 (84)
459 KOG2908 26S proteasome regulat 27.5 5.8E+02 0.012 25.9 9.7 84 396-479 82-176 (380)
460 PF08424 NRDE-2: NRDE-2, neces 27.4 6.6E+02 0.014 25.4 14.6 139 405-558 47-212 (321)
461 cd08326 CARD_CASP9 Caspase act 27.0 2.5E+02 0.0054 21.9 5.9 40 268-307 41-80 (84)
462 TIGR02710 CRISPR-associated pr 26.8 7.4E+02 0.016 25.8 11.4 125 429-554 135-274 (380)
463 PF07064 RIC1: RIC1; InterPro 25.9 6.3E+02 0.014 24.7 15.5 155 88-251 84-249 (258)
464 COG2912 Uncharacterized conser 25.9 1.7E+02 0.0036 28.6 5.7 59 497-555 186-244 (269)
465 PF12926 MOZART2: Mitotic-spin 25.8 3.3E+02 0.0071 21.4 6.6 42 142-183 29-70 (88)
466 COG5191 Uncharacterized conser 25.8 1.3E+02 0.0028 29.8 4.9 75 458-532 105-182 (435)
467 PF02847 MA3: MA3 domain; Int 25.7 1.6E+02 0.0036 24.1 5.3 22 192-213 7-28 (113)
468 PF02607 B12-binding_2: B12 bi 25.6 1.5E+02 0.0033 22.4 4.6 40 400-439 12-51 (79)
469 PRK12356 glutaminase; Reviewed 25.5 5.1E+02 0.011 26.1 9.2 83 402-487 167-258 (319)
470 PHA03100 ankyrin repeat protei 25.2 8.6E+02 0.019 26.0 15.7 134 38-183 49-200 (480)
471 cd00280 TRFH Telomeric Repeat 24.5 1.9E+02 0.004 26.4 5.3 26 499-525 118-143 (200)
472 COG0790 FOG: TPR repeat, SEL1 24.3 6.9E+02 0.015 24.6 18.1 19 303-321 128-146 (292)
473 PF10155 DUF2363: Uncharacteri 23.9 4.6E+02 0.0099 22.3 11.1 114 69-184 3-126 (126)
474 KOG4507 Uncharacterized conser 23.8 3.6E+02 0.0079 29.4 8.1 134 420-556 567-706 (886)
475 PF05119 Terminase_4: Phage te 23.7 3.3E+02 0.0072 21.6 6.6 34 579-612 57-90 (100)
476 COG3043 NapB Nitrate reductase 23.5 57 0.0012 28.1 1.9 19 646-664 80-98 (155)
477 KOG2581 26S proteasome regulat 23.2 8.8E+02 0.019 25.4 14.0 124 401-525 138-280 (493)
478 KOG3364 Membrane protein invol 23.0 2.4E+02 0.0052 24.3 5.4 31 498-528 77-107 (149)
479 PRK14962 DNA polymerase III su 22.4 1E+03 0.022 25.8 12.8 25 199-223 255-279 (472)
480 PF10255 Paf67: RNA polymerase 22.3 5.2E+02 0.011 27.1 8.9 56 464-519 126-191 (404)
481 PF09670 Cas_Cas02710: CRISPR- 22.3 8E+02 0.017 25.6 10.6 55 95-150 140-198 (379)
482 COG0735 Fur Fe2+/Zn2+ uptake r 22.1 4.1E+02 0.0089 23.2 7.1 46 292-337 24-69 (145)
483 PF10475 DUF2450: Protein of u 22.0 3.6E+02 0.0078 26.9 7.7 54 160-215 102-155 (291)
484 PRK11639 zinc uptake transcrip 22.0 3.6E+02 0.0078 24.3 7.0 58 114-172 19-76 (169)
485 cd00280 TRFH Telomeric Repeat 21.9 4E+02 0.0086 24.4 6.8 36 466-501 117-152 (200)
486 smart00777 Mad3_BUB1_I Mad3/BU 21.8 5E+02 0.011 22.1 8.0 41 510-550 81-123 (125)
487 PF09986 DUF2225: Uncharacteri 21.7 6.8E+02 0.015 23.6 9.8 21 466-486 171-191 (214)
488 COG5108 RPO41 Mitochondrial DN 21.7 5.4E+02 0.012 28.7 8.9 72 227-298 33-113 (1117)
489 KOG0508 Ankyrin repeat protein 21.7 9E+02 0.02 25.8 10.1 47 487-533 331-383 (615)
490 PF10475 DUF2450: Protein of u 21.6 3.7E+02 0.008 26.8 7.7 52 263-316 104-155 (291)
491 cd07153 Fur_like Ferric uptake 21.5 2E+02 0.0044 23.7 5.0 48 394-441 5-52 (116)
492 COG2909 MalT ATP-dependent tra 21.4 1.3E+03 0.029 26.8 27.0 218 268-486 426-685 (894)
493 PF02847 MA3: MA3 domain; Int 21.3 1.8E+02 0.004 23.8 4.7 22 263-284 8-29 (113)
494 KOG4567 GTPase-activating prot 20.8 8.6E+02 0.019 24.4 9.9 73 409-487 263-345 (370)
495 COG5108 RPO41 Mitochondrial DN 20.6 4.2E+02 0.0091 29.4 7.9 25 126-150 33-57 (1117)
496 KOG1524 WD40 repeat-containing 20.5 4.9E+02 0.011 28.1 8.1 61 459-522 572-632 (737)
497 PF04190 DUF410: Protein of un 20.4 8E+02 0.017 23.9 18.5 82 356-452 88-169 (260)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-131 Score=1133.54 Aligned_cols=673 Identities=37% Similarity=0.678 Sum_probs=662.7
Q ss_pred ccCCCCChHHHHHHhccCCChH---HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHH
Q 005476 15 ITQFPENPKTLIVQQCKTTKDL---NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNI 91 (695)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 91 (695)
.-.|+.+||++++++|+..+++ +++|+.+.+.|+.+|+.++|+|+.+|+++ |++++|.++|++|++||.++||+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~d~~s~n~ 258 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMPRRDCISWNA 258 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCCCCCcchhHH
Confidence 4578999999999999988877 89999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 005476 92 MIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGR 171 (695)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 171 (695)
||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 005476 172 IDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEK 251 (695)
Q Consensus 172 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 251 (695)
+++|.++|++|..||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHH
Q 005476 252 ELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLS 331 (695)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 331 (695)
|+.|+..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005476 332 CCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALET 411 (695)
Q Consensus 332 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 411 (695)
+|++.|+++.+.++|..+.+.|+.++..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 005476 412 YYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPN 491 (695)
Q Consensus 412 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 491 (695)
|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999987789999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCceeEEEECCE
Q 005476 492 PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKKTPGCSLIELDGE 571 (695)
Q Consensus 492 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 571 (695)
..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhhhhchHHHHHHHhhhcCCCCCcEEEEcc
Q 005476 572 IYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPNTADARLDAEEDDKEASVAHHSEKLAIAFGLIRASPGTTIRISKN 651 (695)
Q Consensus 572 ~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 651 (695)
+|.|.+||.+||+.++||..+++|..+|++.||+||+..++ +.++++|+..+++||||||+|||||++|||.||||+||
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~kn 815 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKN 815 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCC
Confidence 99999999999999999999999999999999999999887 55778899999999999999999999999999999999
Q ss_pred ccccCCccchhhhhhcccCceEEEecCCcccccCcccccCCC
Q 005476 652 LRVCTDCHNATKIISKVFNREIVVRDRTRFHHFKEGSCSCND 693 (695)
Q Consensus 652 l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs~~~ 693 (695)
||+|+|||+++|+||++++|+|||||.+|||||++|+|||+|
T Consensus 816 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 816 LYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-123 Score=1045.75 Aligned_cols=613 Identities=34% Similarity=0.636 Sum_probs=605.7
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHH
Q 005476 83 EPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNS-VEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNT 161 (695)
Q Consensus 83 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 161 (695)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHH
Q 005476 162 LIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELG 241 (695)
Q Consensus 162 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 241 (695)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCC
Q 005476 242 GWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVP 321 (695)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 321 (695)
.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 005476 322 NEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLAS 401 (695)
Q Consensus 322 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 401 (695)
|..||++++.+|++.|.++.|.++|..|.+.|+.+|..++++||++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 005476 402 NGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQ 481 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 481 (695)
+|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCC
Q 005476 482 FIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKKTP 561 (695)
Q Consensus 482 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 561 (695)
++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.+++++|+++|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEeecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhhhhchHHHHHHHhhhcCC
Q 005476 562 GCSLIELDGEIYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPNTADARLDAEEDDKEASVAHHSEKLAIAFGLIRAS 641 (695)
Q Consensus 562 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 641 (695)
|+||+++++.+|.|.+||..||+.++++..+.+|..+|++.||+||+..++|++++++|+..+++||||||+|||||++|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCccchhhhhhcccCceEEEecCCcccccCcccccCCCCC
Q 005476 642 PGTTIRISKNLRVCTDCHNATKIISKVFNREIVVRDRTRFHHFKEGSCSCNDYW 695 (695)
Q Consensus 642 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs~~~~~ 695 (695)
||.||||+||||+|+|||+++|+||+++||+|||||.+|||||++|+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-84 Score=742.16 Aligned_cols=650 Identities=27% Similarity=0.430 Sum_probs=573.3
Q ss_pred CCCCChHHHHHHhccCCChH---HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHH
Q 005476 17 QFPENPKTLIVQQCKTTKDL---NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMI 93 (695)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 93 (695)
+|+..+|..++++|...+.+ .++|..+.+.|..+++.++|+|+++|+++ |+++.|+++|++|++||+++||+||
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~---g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF---GELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC---CChHHHHHHHhcCCCCCeeEHHHHH
Confidence 57788999999999887766 89999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChh
Q 005476 94 RAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRID 173 (695)
Q Consensus 94 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 173 (695)
.+|++.|++++|+++|++|...|+.||.+||++++++|+..++++.+.++|..+.+.|+.||..++|+||.+|+++|+++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 005476 174 IARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKEL 253 (695)
Q Consensus 174 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 253 (695)
+|.++|++|+++|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 005476 254 NGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCC 333 (695)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 333 (695)
.||..+||+|+.+|+++|++++|.++|++|..+|.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005476 334 AVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYY 413 (695)
Q Consensus 334 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 413 (695)
++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh
Q 005476 414 IMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPV 493 (695)
Q Consensus 414 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 493 (695)
+|.. +++||.+||+.+|.+|++.|.++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~ 555 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVV 555 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChh
Confidence 9986 59999999999999999999999999999999875 99999999999999999999999999999998 79999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCccCCceeEEEECCE
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTLE-PMHSGDYILLSDIYASAGRCEDALRVMNQMR-EQGIKKTPGCSLIELDGE 571 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~ 571 (695)
+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+......
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~----- 630 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC----- 630 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH-----
Confidence 99999999999999999999999999865 3467899999999999999999999999999 5788875422111
Q ss_pred EEEeecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhhhhchHHHH-HHHhhhcCCCCCcEEEEc
Q 005476 572 IYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPNTADARLDAEEDDKEASVAHHSEKLA-IAFGLIRASPGTTIRISK 650 (695)
Q Consensus 572 ~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~~~~~~ 650 (695)
++......+..+++. ++++ +.++.||...|..-+..+...+-+ .-.|+.+ ..+.+.+..++.-+.+.+
T Consensus 631 ---lv~~l~r~G~~~eA~----~~~~---~m~~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~~l~p~~~~~y~ll~n 699 (857)
T PLN03077 631 ---VVDLLGRAGKLTEAY----NFIN---KMPITPDPAVWGALLNACRIHRHV-ELGELAAQHIFELDPNSVGYYILLCN 699 (857)
T ss_pred ---HHHHHHhCCCHHHHH----HHHH---HCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCcchHHHHHH
Confidence 111122223344444 3444 446889987664433333211100 0011211 223444443443333333
Q ss_pred cccccCCccchhhhhhcc--------cCceEEEecCCcccccCccccc
Q 005476 651 NLRVCTDCHNATKIISKV--------FNREIVVRDRTRFHHFKEGSCS 690 (695)
Q Consensus 651 ~l~~~~~~~~~~~~~s~~--------~~~~~~~~~~~~~h~~~~g~cs 690 (695)
-+...|+..++.+....| +|... |--.+..|-|..|--+
T Consensus 700 ~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~-ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 700 LYADAGKWDEVARVRKTMRENGLTVDPGCSW-VEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHHCCChHHHHHHHHHHHHcCCCCCCCccE-EEECCEEEEEecCCCC
Confidence 345678888888777544 44442 2234678888766443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-67 Score=596.15 Aligned_cols=504 Identities=16% Similarity=0.252 Sum_probs=467.6
Q ss_pred CCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcc-----hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhh
Q 005476 49 HLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSS-----AYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFT 123 (695)
Q Consensus 49 ~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 123 (695)
.++...+..++..++++ |++++|+++|+.|+.++.. .++.++.+|.+.|..++|+.+|+.|.. ||..+
T Consensus 367 ~~~~~~~~~~y~~l~r~---G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRD---GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCCchHHHHHHHHHHHC---cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 56777889999999999 9999999999999876654 455677789999999999999999974 89999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccC----CCCeehHHHHHHHHHh
Q 005476 124 FACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS----NRDVFSWNSMFSGYVK 199 (695)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 199 (695)
|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+||+||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 4899999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhcCCHHHHH
Q 005476 200 TECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEE--KELNGNVKLMTAVVDMYAKCGHVDKAR 277 (695)
Q Consensus 200 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 277 (695)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.+ .|+.||..+|++|+.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 678999999999999999999999999
Q ss_pred HHHHhcCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 005476 278 RLFEQMNIK----DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKR 353 (695)
Q Consensus 278 ~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 353 (695)
++|++|.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999754 6699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHhHHhcchhhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005476 354 MELTITLGTALMDFYAKCGLIENAVEVFKKMP----LKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIA 429 (695)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 429 (695)
+.|+..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999994 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHh----hcC-------------------CHHHHHHHHHhC
Q 005476 430 VLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILG----RAG-------------------LVEEAYQFIKNM 486 (695)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m 486 (695)
++.+|++.|++++|.++|..|.+. |+.||..+|++|++++. +++ ..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 999999999999999999999875 99999999999998743 222 346799999999
Q ss_pred ---CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCc
Q 005476 487 ---PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTL-EPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKKTPG 562 (695)
Q Consensus 487 ---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 562 (695)
++.||..+|+.++.++...+..+.+..+++.+... .+++..+|..|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 88999999999998877888888888888776543 356778999999987432 368999999999999988653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-66 Score=581.13 Aligned_cols=436 Identities=25% Similarity=0.428 Sum_probs=413.0
Q ss_pred CCCCChHHHHHHhccCCChH---HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHH
Q 005476 17 QFPENPKTLIVQQCKTTKDL---NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMI 93 (695)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 93 (695)
.|+..||.+++++|+..+.+ +++|..+.+.|+.||+.++|.|+++|+++ |++++|+++|++|++||.++||++|
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC---CCHHHHHHHHhcCCCCCeeeHHHHH
Confidence 47889999999999988876 89999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChh
Q 005476 94 RAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRID 173 (695)
Q Consensus 94 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 173 (695)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.++|..+.+.|+.+|..++|+||++|+++|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 005476 174 IARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKEL 253 (695)
Q Consensus 174 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 253 (695)
+|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+++|+.|.+.|+
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 005476 254 NGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCC 333 (695)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 333 (695)
.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHH-hCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHH
Q 005476 334 AVLGALETGKWVHLYVKK-KRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL-KNVFFWTVLIQCLASNGQGERALET 411 (695)
Q Consensus 334 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l 411 (695)
++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+. |+..+|++|+.+|..+|+.+.|..+
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999986 69999999999999999999999999999988864 7888888888888888888888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC
Q 005476 412 YYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP 458 (695)
Q Consensus 412 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 458 (695)
++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+.+
T Consensus 517 ~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 517 AEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 888765 5665 447888888888888888888888888654 6643
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-64 Score=567.23 Aligned_cols=498 Identities=15% Similarity=0.210 Sum_probs=465.6
Q ss_pred CCChHHHHHHhccCCChH---HHHHHHHHHhcC-CCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHH
Q 005476 19 PENPKTLIVQQCKTTKDL---NQVHAHLIKSRF-HLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIR 94 (695)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 94 (695)
+...+..++..|...+.+ .+++..|.+.|+ +++...++.++..|.+. |.+++|..+|+.|+.||..+||.+|.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~---g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ---RAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345567777776544544 788999999985 67888889999999999 99999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhH
Q 005476 95 AFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDI 174 (695)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 174 (695)
+|++.|++++|+++|+.|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHH--cCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 005476 175 ARKMFDRMSN----RDVFSWNSMFSGYVKTECWREIVDLFNEMRD--LGVKFDEVTLINVLMACGRLADIELGGWISEYM 248 (695)
Q Consensus 175 A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 248 (695)
|.++|++|.+ ||.++||+||.+|++.|++++|.++|++|.. .|+.||.+||+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999964 8999999999999999999999999999976 689999999999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHH
Q 005476 249 EEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMN----IKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEV 324 (695)
Q Consensus 249 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 324 (695)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999997 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHH
Q 005476 325 TMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP----LKNVFFWTVLIQCLA 400 (695)
Q Consensus 325 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 400 (695)
+|++++.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 489999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------ccHHHHHHHHHHchhhcCCC
Q 005476 401 SNGQGERALETYYIMREKNIEPNDVAFIAVLSACSH----V-------------------GMVDEGRELFVSMSRDFDLE 457 (695)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~ 457 (695)
+.|+.++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+. |+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCC
Confidence 999999999999999999999999999999976542 1 1246799999999875 999
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 005476 458 PRMEHYGCMVDILGRAGLVEEAYQFIKNMP---IPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLE 522 (695)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 522 (695)
||..+|+.++..+.+.+..+.+..+++.|+ ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999999984 556789999999998443 468999999999976
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-29 Score=295.32 Aligned_cols=506 Identities=13% Similarity=0.069 Sum_probs=369.9
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 005476 37 NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINE---PDSSAYNIMIRAFTLKQSPQEAVMLYKTML 113 (695)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 113 (695)
......+.+.. +.++..++.+...|.+. |++++|...|+++.+ .+...|..+...+...|++++|++.|+.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLAL---GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 33444444333 34667788888888888 999999999987643 345567788888888899999999888887
Q ss_pred hCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehH
Q 005476 114 QNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSW 190 (695)
Q Consensus 114 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~ 190 (695)
+.... +......++..+.+.|++++|.++++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...+
T Consensus 425 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 502 (899)
T TIGR02917 425 QLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502 (899)
T ss_pred hhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Confidence 75432 23445556677778888888888888887653 55677888888888888888888888887643 345567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 005476 191 NSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKC 270 (695)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 270 (695)
..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC
Confidence 777778888888888888888887653 2355667777777778888888888888877664 44566777788888888
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 005476 271 GHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHL 347 (695)
Q Consensus 271 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 347 (695)
|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...|+++.|..++.
T Consensus 581 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 581 GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888887753 356678888888888888888888888877653 3345566677777778888888888888
Q ss_pred HHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005476 348 YVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPND 424 (695)
Q Consensus 348 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (695)
.+.+.. +.+...+..++..+.+.|++++|.++++.+.. .+...|..+...+...|++++|++.|+++.. ..|+.
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 736 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSS 736 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCc
Confidence 777654 44566777777888888888888888877754 3555677777777788888888888888777 34555
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHH
Q 005476 425 VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PI-PPNPVIWRTLLAAC 502 (695)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~ 502 (695)
.++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ .. +++..+++.+...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6666777777777888888887777765 33446677777777777788888887777776 22 33566777777777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 503 RAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
...|+ ++|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777 6677777777777777777777777777777777777777777776543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.7e-29 Score=293.70 Aligned_cols=505 Identities=13% Similarity=0.029 Sum_probs=429.2
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 005476 37 NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINE---PDSSAYNIMIRAFTLKQSPQEAVMLYKTML 113 (695)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 113 (695)
...+..+++.. +.++..+..+...+.+. |++++|...++.+.. .+...|+.+...+.+.|++++|.++|+++.
T Consensus 315 ~~~~~~~~~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 315 YQYLNQILKYA-PNSHQARRLLASIQLRL---GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556555543 34566778888899999 999999999988753 456689999999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehH
Q 005476 114 QNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSW 190 (695)
Q Consensus 114 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~ 190 (695)
+... .+...+..+...+...|++++|.+.+..+.+.. +........++..|.+.|++++|..+++++.. .+..+|
T Consensus 391 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 468 (899)
T TIGR02917 391 ELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLH 468 (899)
T ss_pred hcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 7532 255677778888889999999999999998875 33456677788999999999999999998864 466789
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 005476 191 NSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKC 270 (695)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 270 (695)
+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.+ +.+..++..+...|.+.
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHc
Confidence 999999999999999999999998753 2344557778888899999999999999998875 55788899999999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 005476 271 GHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHL 347 (695)
Q Consensus 271 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 347 (695)
|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++.... +.+..++..+...+...|+++.|...+.
T Consensus 547 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998743 356788889999999999999999999998753 5567788999999999999999999999
Q ss_pred HHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005476 348 YVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPND 424 (695)
Q Consensus 348 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (695)
.+.+.. +.+...+..+..+|.+.|++++|...|+++.. .+..+|..++..+...|++++|.++++.+.+.+ +++.
T Consensus 626 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 626 KLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 998865 45667788899999999999999999988754 467889999999999999999999999998864 4456
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHH
Q 005476 425 VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-P-IPPNPVIWRTLLAAC 502 (695)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~a~ 502 (695)
..+..+...+...|++++|.+.|..+.. ..|+..++..++..+.+.|++++|.+.++++ . .+.+..++..+...|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6788888899999999999999999874 3566688888999999999999999999887 2 234677888888899
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 503 RAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
...|+.++|.+.++++++..|+++..+..++.+|...|+ ++|+.+++++.+..
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999 88999999988753
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.9e-31 Score=221.22 Aligned_cols=106 Identities=54% Similarity=0.941 Sum_probs=97.6
Q ss_pred ceeEEEECCEEEEeecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhh--------hhhhhhchHHHHH
Q 005476 562 GCSLIELDGEIYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPNTADARLDAEEDDK--------EASVAHHSEKLAI 633 (695)
Q Consensus 562 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 633 (695)
||||+++ |.|.+|+.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899886 9999999999988 566678889999999999998887755 5688999999999
Q ss_pred HHhhhcCCCCCcEEEEccc-cccCCccchhhhhhcccCceEEEecCCcccccC
Q 005476 634 AFGLIRASPGTTIRISKNL-RVCTDCHNATKIISKVFNREIVVRDRTRFHHFK 685 (695)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 685 (695)
||||+++ +|+||+ |||+|||+++|+||+++||+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.1e-21 Score=230.01 Aligned_cols=503 Identities=13% Similarity=0.085 Sum_probs=275.4
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC--CCc-chH----------------HHHHHHHH
Q 005476 37 NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINE--PDS-SAY----------------NIMIRAFT 97 (695)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~--~~~-~~~----------------~~li~~~~ 97 (695)
++...++...- +.|+.+...+...+.+. |+.++|.+.+++..+ |+. ..+ -.+...+.
T Consensus 48 ~~~l~kl~~~~-p~~p~~~~~~~~~~l~~---g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~ 123 (1157)
T PRK11447 48 RQSLYRLELID-PNNPDVIAARFRLLLRQ---GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLA 123 (1157)
T ss_pred HHHHHHHHccC-CCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 44444433332 34788888889999999 999999999998853 322 222 22334678
Q ss_pred cCCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHH
Q 005476 98 LKQSPQEAVMLYKTMLQNSVEPDRF-TFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIAR 176 (695)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 176 (695)
..|++++|++.|+.+.+.. +|+.. ............++.++|.+.++.+.+.. +.+...+..|...+...|+.++|+
T Consensus 124 ~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 124 TTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred hCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999999998753 23322 11112222334689999999999999885 557778899999999999999999
Q ss_pred HHHhccCCCCe------ehH-----------------HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005476 177 KMFDRMSNRDV------FSW-----------------NSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACG 233 (695)
Q Consensus 177 ~~f~~m~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 233 (695)
..|+++..... ..| ...+..+-.....+.|...+.++......|+... .....++.
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~ 280 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAV 280 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHH
Confidence 99998743211 011 1111111111112233333333322211222111 11123344
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHH------------HH
Q 005476 234 RLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK--D---VVAWSAM------------IS 296 (695)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~---~~~~~~l------------i~ 296 (695)
..|++++|...++.+++.. +.+..++..|...|.+.|++++|+..|++..+. + ...|..+ ..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 4556666666666555542 234555555666666666666666666554321 1 1112111 22
Q ss_pred HHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHH------------
Q 005476 297 GYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTAL------------ 364 (695)
Q Consensus 297 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l------------ 364 (695)
.+.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.++.+.+... .+...+..+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHH
Confidence 3445566666666666655542 22333444455555556666666666665555431 122233333
Q ss_pred ------------------------------hcchhhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHH
Q 005476 365 ------------------------------MDFYAKCGLIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQGERALET 411 (695)
Q Consensus 365 ------------------------------i~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l 411 (695)
...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|+..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344445555555555555432 1 333444455555555555555555
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCCh---------hHHHHHHHHHhhcCCHHHHHH
Q 005476 412 YYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRM---------EHYGCMVDILGRAGLVEEAYQ 481 (695)
Q Consensus 412 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~~ 481 (695)
|+++.+ ..|+.. .+..+...+...++.++|...++.+... ...++. ..+..+.+.+...|+.++|.+
T Consensus 518 l~~al~--~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 518 MRRLAQ--QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 555554 233222 2222223344455555555555544221 111110 011223444555666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 482 FIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 482 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
+++.-| ++...+..+...+.+.|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+
T Consensus 595 ~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 595 LLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 666322 23445556666677777777777777777777777777777777777777777777777776654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=4.4e-20 Score=218.80 Aligned_cols=476 Identities=11% Similarity=0.069 Sum_probs=343.5
Q ss_pred CCHHHHHHHhccCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCC------------------C---------
Q 005476 69 TTMDYALSIFHKINE--P-DSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSV------------------E--------- 118 (695)
Q Consensus 69 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~--------- 118 (695)
|+.++|+..|+++.. | +...+..+...+...|++++|+..|+++.+... .
T Consensus 161 g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 889999999988763 3 455788888889899999999999988754321 0
Q ss_pred -----CChhhH----H-----------------HHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCh
Q 005476 119 -----PDRFTF----A-----------------CTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRI 172 (695)
Q Consensus 119 -----p~~~~~----~-----------------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 172 (695)
|+...+ . .....+...|++++|...++..++.. +.+..++..|...|.+.|++
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 110000 0 01123445677888888888777764 44667777788888888888
Q ss_pred hHHHHHHhccCC--CCe---ehHHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 005476 173 DIARKMFDRMSN--RDV---FSWNSM------------FSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRL 235 (695)
Q Consensus 173 ~~A~~~f~~m~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 235 (695)
++|+..|++..+ |+. ..|..+ ...+.+.|++++|+..|++..... +.+...+..+...+...
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR 398 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888888877654 221 123222 234567788888888888877653 22344566667777778
Q ss_pred CChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------------hhHHHHHHHHHHhcCC
Q 005476 236 ADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKD------------VVAWSAMISGYSQARR 303 (695)
Q Consensus 236 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~ 303 (695)
|++++|.+.++.+++.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|+
T Consensus 399 g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 399 KDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 88888888888877763 334556666666664 456788887777665321 1234456667788999
Q ss_pred HHHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHh
Q 005476 304 CKEALGVFHDMQMANVVPN-EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFK 382 (695)
Q Consensus 304 ~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 382 (695)
+++|++.|++..+. .|+ ...+..+...+...|+.++|...++.+++.. +.+...+..+...+.+.|+.++|...++
T Consensus 477 ~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 477 WAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998875 354 4566777888899999999999999988754 3344444455556778899999999999
Q ss_pred cCCCC----Ch---------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 005476 383 KMPLK----NV---------FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVS 449 (695)
Q Consensus 383 ~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (695)
.+... +. ..+..+...+...|+.++|+++++. .+++...+..+...+.+.|++++|.+.|+.
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88642 11 1123445678889999999999872 234455677788889999999999999999
Q ss_pred chhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 005476 450 MSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG 527 (695)
Q Consensus 450 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (695)
+.+. -+.+...+..++..|...|++++|++.++.. ...| +...+..+..++...|++++|.+.++++++..|+++.
T Consensus 629 al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 629 VLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9752 2335788999999999999999999999987 3344 4566777888899999999999999999998765543
Q ss_pred ------cHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCc
Q 005476 528 ------DYILLSDIYASAGRCEDALRVMNQMRE-QGIK 558 (695)
Q Consensus 528 ------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~ 558 (695)
.+..++.++...|++++|...+++... .|+.
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 455678999999999999999999864 3454
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1e-20 Score=189.71 Aligned_cols=449 Identities=14% Similarity=0.066 Sum_probs=320.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcC
Q 005476 91 IMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCG 170 (695)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 170 (695)
.|..-..+.|++++|.+.-...-+.+. .+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 344445566777777765554433221 122222222233344444444433333333321 233456777777777778
Q ss_pred ChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhccCChhHHHHHHH
Q 005476 171 RIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVL-MACGRLADIELGGWISE 246 (695)
Q Consensus 171 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~~~~~~~a~~~~~ 246 (695)
++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-+ ......|.+++|...+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 88888887777654 3456777777888888888888888877766 356655433322 22234577777777777
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC-
Q 005476 247 YMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKD---VVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN- 322 (695)
Q Consensus 247 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd- 322 (695)
..++.. +--..+|+.|...+-..|++..|+..|++...-| ..+|-.|...|...+.+++|+..|.+.... .|+
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 766653 2235567777777788888888888888765433 356777777888888888888888777654 454
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 005476 323 EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCL 399 (695)
Q Consensus 323 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 399 (695)
.+.+..+...|...|.++.|..-+++.++.. +.-+..|+.|..++-..|++.+|.+.+++... ....+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4466666666777888888888888777654 23356777788888888888888888877653 3556788899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHH
Q 005476 400 ASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGRAGLVE 477 (695)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 477 (695)
...|.+++|..+|....+ +.|.-. .++.|...|-+.|++++|...+++.+ .+.|+ ...|+.+...|-..|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999988 788765 88999999999999999999999886 67887 578999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 005476 478 EAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 478 ~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 552 (695)
.|...+.+. .+.|. ....+.|.+.|...|++.+|+..++.+++++|+.+.+|-.++.+..-..+|.+-.+.++++
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 999988876 56665 5578899999999999999999999999999999999999998887777777644444443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=3.8e-18 Score=193.31 Aligned_cols=467 Identities=10% Similarity=0.011 Sum_probs=310.4
Q ss_pred CCHHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005476 69 TTMDYALSIFHKINE---PDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHA 145 (695)
Q Consensus 69 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (695)
|++++|...|+...+ .+..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHH
Confidence 888888888887643 34567788888888888888888888888874 45544444444333 77888888888
Q ss_pred HHHHhCCCCCccHHHHHHHH--------HHhcCChhHHHHHHhccCCCC--eehHH-HHHHHHHhCCChhHHHHHHHHHH
Q 005476 146 QILKSGFGCRQLVTNTLIHL--------YANCGRIDIARKMFDRMSNRD--VFSWN-SMFSGYVKTECWREIVDLFNEMR 214 (695)
Q Consensus 146 ~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~~m~ 214 (695)
++.+.. +.+..++..+... |.+.+...+++. .+...++ ..... .+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888875 4556666666665 777766666666 3333333 33333 34788888888888888888888
Q ss_pred HcCCCCCHhHHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch
Q 005476 215 DLGVKFDEVTLINVLMACGR-LADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK-----DV 288 (695)
Q Consensus 215 ~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~ 288 (695)
+.+... ..-...+-.++.. .++ +.+..++.. .+..+..++..+++.|.+.|+.++|.+++++++.- +.
T Consensus 210 k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 875332 2324445456655 355 555555332 33457778888888888888888888888776410 00
Q ss_pred hH------------------------------------------------------------------------------
Q 005476 289 VA------------------------------------------------------------------------------ 290 (695)
Q Consensus 289 ~~------------------------------------------------------------------------------ 290 (695)
.+
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 00
Q ss_pred -HHH--------------HHHHHHhcCCHHHHHHHHHHhHHC-C-CCCCHHHHHHHHHHHhcc-----------------
Q 005476 291 -WSA--------------MISGYSQARRCKEALGVFHDMQMA-N-VVPNEVTMVSVLSCCAVL----------------- 336 (695)
Q Consensus 291 -~~~--------------li~~~~~~g~~~~A~~~~~~m~~~-g-~~pd~~t~~~ll~a~~~~----------------- 336 (695)
|-. +.--..+.|+.++|.++|+..... + ..++.....-++..+...
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 000 000123455666666666555431 0 111111222233333222
Q ss_pred ----------------------------------------------CChhHHHHHHHHHHHhCCCCchHHHhHHhcchhh
Q 005476 337 ----------------------------------------------GALETGKWVHLYVKKKRMELTITLGTALMDFYAK 370 (695)
Q Consensus 337 ----------------------------------------------~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 370 (695)
+..++|...+....... |+......+...+..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 33334444444433332 333222233444457
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 005476 371 CGLIENAVEVFKKMPL--KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELF 447 (695)
Q Consensus 371 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 447 (695)
.|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+. .|+.. .+..+.......|++++|...+
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7888888888876643 33445666667778888888888888888774 35443 3333444455668999999999
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 448 VSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 448 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
+... .+.|+...|..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|++
T Consensus 600 ~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 600 TRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 8886 45677888899999999999999999999886 4556 45677777788999999999999999999999999
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 526 SGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
+..+..++.+|...|++++|...+++..+..
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987743
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=9.6e-20 Score=182.85 Aligned_cols=418 Identities=13% Similarity=0.127 Sum_probs=338.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCC
Q 005476 126 CTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTEC 202 (695)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 202 (695)
.|..-..+.|++++|++--..+-..+ +.+....-.+-..|....+.+....--..... .-..+|..+.+.+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444557788888877544443332 33333333444556666666554332222211 234689999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCHHHHHHHH
Q 005476 203 WREIVDLFNEMRDLGVKFD-EVTLINVLMACGRLADIELGGWISEYMEEKELNGNV-KLMTAVVDMYAKCGHVDKARRLF 280 (695)
Q Consensus 203 ~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f 280 (695)
.++|+.+++.|.+. +|+ ...|..+..++...|+.+.|.+.+...++. .|+. .+.+-+.......|++++|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999984 564 445899999999999999999999998876 4543 34455556666789999999988
Q ss_pred HhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 005476 281 EQMNIK---DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN-EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMEL 356 (695)
Q Consensus 281 ~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 356 (695)
.+..+. =.++|+.|...+-.+|+...|++.|++.... .|+ ...|..+...+...+.++.|...+..+.... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 876543 3578999999999999999999999999864 565 3478888888888999999988888776654 34
Q ss_pred chHHHhHHhcchhhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 005476 357 TITLGTALMDFYAKCGLIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLS 432 (695)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 432 (695)
...++..+...|-..|.++.|...+++..+ | =...||.|..++-..|+..+|...|.+... +.|+.. ..+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 456677788999999999999999998865 3 346899999999999999999999999998 788866 8889999
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChh
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVK 509 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~ 509 (695)
.+...|.+++|..+|.... .+.|. ....+.|...|-++|++++|+.-+++. .++|+ ...++.+...|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999886 45665 567899999999999999999999886 78886 568999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 510 VGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
.|.+.+.+++..+|.-+.++..|+.+|-.+|+..+|++-++...+..
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999988743
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=6.2e-17 Score=183.49 Aligned_cols=502 Identities=11% Similarity=0.015 Sum_probs=346.5
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHHHhC
Q 005476 38 QVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINE--PDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQN 115 (695)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 115 (695)
..+...++.. +.++.++..|...|.+. |+.++|+..+++... |+-..|..++..+ +++++|..+|+++...
T Consensus 65 ~~l~~Al~~d-P~n~~~~~~LA~~yl~~---g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 65 REFEYIHQQV-PDNIPLTLYLAEAYRHF---GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh
Confidence 3344444443 23578889999999999 999999999988754 3222233323323 7777888888887653
Q ss_pred CCC--------------------------------------CChhhHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCCc
Q 005476 116 SVE--------------------------------------PDRFTFACT-LKACSRIRALEEGEQIHAQILKSGFGCRQ 156 (695)
Q Consensus 116 g~~--------------------------------------p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 156 (695)
... |+..+.... .+.+...++++++..++..+.+.+ +.+.
T Consensus 138 ~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~ 216 (987)
T PRK09782 138 QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSA 216 (987)
T ss_pred CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCH
Confidence 211 112222222 555666777777888888887776 4445
Q ss_pred cHHHHHHHHHHh-cCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHhHHHHH------
Q 005476 157 LVTNTLIHLYAN-CGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVK-FDEVTLINV------ 228 (695)
Q Consensus 157 ~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~l------ 228 (695)
.....|..+|.. .++ ++|..+++.....+...+..+...|.+.|+.++|..+++++...-.. |+..++..+
T Consensus 217 ~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~ 295 (987)
T PRK09782 217 AERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSA 295 (987)
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccC
Confidence 556666667776 355 77777766544457778889999999999999999999887643221 222221111
Q ss_pred ------------------------HHHHhcc-------------------------------------------------
Q 005476 229 ------------------------LMACGRL------------------------------------------------- 235 (695)
Q Consensus 229 ------------------------l~a~~~~------------------------------------------------- 235 (695)
+..+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~ 375 (987)
T PRK09782 296 NPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPAN 375 (987)
T ss_pred chhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCC
Confidence 1111112
Q ss_pred --------------CChhHHHHHHHHHHHh-C-CCCchHHHHHHHHHHHhcCC---HHHHHHH-----------------
Q 005476 236 --------------ADIELGGWISEYMEEK-E-LNGNVKLMTAVVDMYAKCGH---VDKARRL----------------- 279 (695)
Q Consensus 236 --------------~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------- 279 (695)
|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 2222223333222221 0 11123344456666666655 2222222
Q ss_pred --------HHhcC---CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 005476 280 --------FEQMN---IK--DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVH 346 (695)
Q Consensus 280 --------f~~m~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 346 (695)
+.... .. +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...+
T Consensus 456 ~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11111 11 44566777777766 7888899988777765 477655444555567899999999999
Q ss_pred HHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005476 347 LYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVL---IQCLASNGQGERALETYYIMREKNIEPN 423 (695)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (695)
+.+... +|+...+..+...+.+.|++++|...|++....++..++.. .......|++++|+..|++..+ +.|+
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~ 608 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPS 608 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCC
Confidence 987654 34444556677888999999999999988766443333333 2334455999999999999998 7788
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHH
Q 005476 424 DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLA 500 (695)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 500 (695)
...+..+..++.+.|+.++|...++.... +.| +...++.+...+...|++++|++.+++. ...| +...+..+..
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 78899999999999999999999999874 455 5778889999999999999999999986 4455 5778999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 005476 501 ACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIK 558 (695)
Q Consensus 501 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 558 (695)
++...|++++|+..++++++++|++..+....+++..+..+++.|.+-+++....++.
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999999999988887665543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=5.7e-18 Score=188.62 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=188.6
Q ss_pred cCCHHHHHHHHHHhHHCC-CCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHH
Q 005476 301 ARRCKEALGVFHDMQMAN-VVPN-EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAV 378 (695)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g-~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (695)
.+++++|++.|++....+ ..|+ ...+..+...+...|++++|...+..+++.. +.....+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776654 2232 3345555556666777777777777776653 223446666777777888888888
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHchhhc
Q 005476 379 EVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPND-VAFIAVLSACSHVGMVDEGRELFVSMSRDF 454 (695)
Q Consensus 379 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 454 (695)
..|++... .+...|..+...+...|++++|+..|++..+ +.|+. ..+..+...+.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 88876543 3567888888899999999999999999988 56764 46777888889999999999999998752
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-h-------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 455 DLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNP-V-------IWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
.+.+...++.+..++...|++++|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3335778889999999999999999999885 333321 1 12222223445699999999999999999999
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 526 SGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
...+..++.+|...|++++|.+.+++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888999999999999999999999998764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.8e-18 Score=182.87 Aligned_cols=288 Identities=15% Similarity=0.166 Sum_probs=184.1
Q ss_pred HhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC---HHHHHHHHHHHhccCChhH
Q 005476 268 AKCGHVDKARRLFEQMNIK---DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN---EVTMVSVLSCCAVLGALET 341 (695)
Q Consensus 268 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~ 341 (695)
...|++++|...|.++... +..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444321 223344444444444444444444444443221111 1233334444444444444
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCC--------hhHHHHHHHHHHhcCChHHHHHHHH
Q 005476 342 GKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKN--------VFFWTVLIQCLASNGQGERALETYY 413 (695)
Q Consensus 342 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~l~~ 413 (695)
|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|+..|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444331 2233444455555555555555555555543211 1134556677788889999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 005476 414 IMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR--MEHYGCMVDILGRAGLVEEAYQFIKNM-PIP 489 (695)
Q Consensus 414 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 489 (695)
++.+ ..|+ ...+..+...+.+.|++++|.++|+++... .|+ ...++.++.+|.+.|++++|...++++ ...
T Consensus 205 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 205 KALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887 3455 346777778888899999999999888642 343 456788889999999999999999886 446
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCccCCc
Q 005476 490 PNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYAS---AGRCEDALRVMNQMREQGIKKTPG 562 (695)
Q Consensus 490 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 562 (695)
|+...+..+...+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777778888889999999999999999999998765 55555555543 568999999999999999888885
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.3e-18 Score=182.05 Aligned_cols=300 Identities=15% Similarity=0.134 Sum_probs=187.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHh
Q 005476 92 MIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCR---QLVTNTLIHLYAN 168 (695)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~ 168 (695)
....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+++.+..++ ..++..|...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888887532 2445777777888888888888888888876532111 2456677777777
Q ss_pred cCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 005476 169 CGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWIS 245 (695)
Q Consensus 169 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 245 (695)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 7888888777777754 3455677777777777777777777777766432221100
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC
Q 005476 246 EYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN 322 (695)
Q Consensus 246 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 322 (695)
....+..+...+.+.|++++|...|+++.+ .+..++..+...|.+.|++++|+++|+++...+....
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 011234455556666666666666666542 2344666666777777777777777777765432112
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHH
Q 005476 323 EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL--KNVFFWTVLIQCLA 400 (695)
Q Consensus 323 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 400 (695)
..++..+..++...|+.++|...+..+.+.. |+...+..++..|.+.|++++|.++|+++.+ |+...++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 3445556666666666666666666665543 3333445566666666666666666665433 55556666665554
Q ss_pred h---cCChHHHHHHHHHHHHCCCCCCHH
Q 005476 401 S---NGQGERALETYYIMREKNIEPNDV 425 (695)
Q Consensus 401 ~---~g~~~~A~~l~~~m~~~g~~p~~~ 425 (695)
. .|+.++++.+|++|.+.+++|++.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 446667777777776666555544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.2e-16 Score=177.81 Aligned_cols=395 Identities=10% Similarity=-0.016 Sum_probs=177.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChh
Q 005476 128 LKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWR 204 (695)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 204 (695)
+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 333444455555555544444321 22333344455555555555555555554321 12333444444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 005476 205 EIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMN 284 (695)
Q Consensus 205 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 284 (695)
+|+..+++..+. .|+...+..+..++...|+.+.|...++.+.+.. +.+..++..+..++...|..+.|++.++...
T Consensus 101 eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 555555555443 2222114444444455555555555555555542 2244445556666666677777777776655
Q ss_pred CCChh--------HHHHHHHHH-----HhcCCH---HHHHHHHHHhHHC-CCCCCHH-HHH----HHHHHHhccCChhHH
Q 005476 285 IKDVV--------AWSAMISGY-----SQARRC---KEALGVFHDMQMA-NVVPNEV-TMV----SVLSCCAVLGALETG 342 (695)
Q Consensus 285 ~~~~~--------~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~pd~~-t~~----~ll~a~~~~~~~~~a 342 (695)
. +.. ....++... ...+++ ++|++.++.+... ...|+.. .+. ..+.++...++.++|
T Consensus 178 ~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 178 L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 4 111 111111111 112223 5667777776643 1222221 111 112233444556666
Q ss_pred HHHHHHHHHhCCC-CchHHHhHHhcchhhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHH
Q 005476 343 KWVHLYVKKKRME-LTITLGTALMDFYAKCGLIENAVEVFKKMPLKN-------VFFWTVLIQCLASNGQGERALETYYI 414 (695)
Q Consensus 343 ~~i~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~ 414 (695)
...++.+.+.+.+ |+- ....+...|...|++++|+..|+++...+ ...+..+..++.+.|++++|++++++
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6666665554421 111 11113445555555555555555543211 11233344445555555555555555
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 005476 415 MREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR---MEHYGCMVDILGRAGLVEEAYQFIKNM-PIP 489 (695)
Q Consensus 415 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 489 (695)
+... .|... .+. . ..-.|+ ...+..+...+...|++++|++.++++ ...
T Consensus 336 ~~~~--~P~~~~~~~---------------------~---~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 336 TINN--SPPFLRLYG---------------------S---PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred Hhhc--CCceEeecC---------------------C---CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5542 11100 000 0 000111 112334444445555555555555543 112
Q ss_pred C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 490 P-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 490 p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
| +...+..+...+...|++++|++.++++++++|++...+..++..+...|+|++|..+++.+.+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 3344444455555555555555555555555555555555555555555555555555555443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.9e-16 Score=174.40 Aligned_cols=366 Identities=9% Similarity=-0.004 Sum_probs=271.4
Q ss_pred hcCChhHHHHHHhccCC------CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHH
Q 005476 168 NCGRIDIARKMFDRMSN------RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELG 241 (695)
Q Consensus 168 ~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 241 (695)
+..+++.-.-.|...++ .+......++..+.+.|++++|+.+++........+... +..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHH
Confidence 44555555555555543 123334456677788888889988888887764443333 33444555668888888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCC
Q 005476 242 GWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMAN 318 (695)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (695)
...++.+.+.. +.+...+..+...+...|++++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 88888888774 44667788888889999999999999988753 356788888889999999999999998887653
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHH
Q 005476 319 VVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVL 395 (695)
Q Consensus 319 ~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 395 (695)
|+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 332222222334677899999999888887765444444555566788889999999999988754 356778888
Q ss_pred HHHHHhcCChHH----HHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHH
Q 005476 396 IQCLASNGQGER----ALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDI 469 (695)
Q Consensus 396 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 469 (695)
...|.+.|++++ |+..|++..+ +.|+.. .+..+...+...|++++|...++...+ ..| +...+..+...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 899999999886 8999999988 667654 788888999999999999999999875 345 45667788999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHhhHH-HHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHH
Q 005476 470 LGRAGLVEEAYQFIKNM-PIPPNPVIWR-TLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALR 547 (695)
Q Consensus 470 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 547 (695)
|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999887 3456654443 356678899999999999999999998764 234455555
Q ss_pred HHHHHHh
Q 005476 548 VMNQMRE 554 (695)
Q Consensus 548 ~~~~m~~ 554 (695)
.+....+
T Consensus 396 ~~~~~~~ 402 (656)
T PRK15174 396 ALDGQIS 402 (656)
T ss_pred HHHHHHH
Confidence 5555554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=8.8e-16 Score=174.25 Aligned_cols=372 Identities=11% Similarity=0.088 Sum_probs=253.6
Q ss_pred CCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HhHHHHH
Q 005476 153 GCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFD-EVTLINV 228 (695)
Q Consensus 153 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 228 (695)
+.+.....-.+......|+.++|+.++.+... .+...+..+...+...|++++|..+|++.... .|+ ...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 44555666677778888999999999988764 23335888888899999999999999998764 343 4456667
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHH
Q 005476 229 LMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCK 305 (695)
Q Consensus 229 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 305 (695)
...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|+..++++.. .+...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 777788899999999888888773 44555 88888888888999999988888753 25556667777888888888
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCH---HHHHHHHh
Q 005476 306 EALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLI---ENAVEVFK 382 (695)
Q Consensus 306 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~~~~ 382 (695)
+|++.+++... .|+.... +.. ..+ ....+ ..+...+...+++ ++|.+.++
T Consensus 168 ~Al~~l~~~~~---~p~~~~~---l~~-------~~~----~~~~r----------~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRD---LEA-------DAA----AELVR----------LSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHHhCCC---CHHHHHH---HHH-------HHH----HHHHH----------hhcccccChhHHHHHHHHHHHHHH
Confidence 88888876553 3431000 000 000 00000 0011111222233 45555555
Q ss_pred cCCC-----CChh-H----HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHch
Q 005476 383 KMPL-----KNVF-F----WTVLIQCLASNGQGERALETYYIMREKNIE-PNDVAFIAVLSACSHVGMVDEGRELFVSMS 451 (695)
Q Consensus 383 ~~~~-----~~~~-~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 451 (695)
.+.. |+.. . ....+..+...|++++|+..|+++.+.+-+ |+..- ..+..++...|++++|...|+.+.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHh
Confidence 4431 1111 1 111133445678888888888888876532 43322 224567888888999998888876
Q ss_pred hhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-------------CC---HhhHHHHHHHHHhcCChhHHH
Q 005476 452 RDFDLEP--RMEHYGCMVDILGRAGLVEEAYQFIKNMP-IP-------------PN---PVIWRTLLAACRAHKNVKVGE 512 (695)
Q Consensus 452 ~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-------------p~---~~~~~~ll~a~~~~g~~~~a~ 512 (695)
+.....+ .......|..++.+.|++++|.++++++. .. |+ ...+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 4211111 13456667777888899999988888762 22 23 123455667788999999999
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 513 ESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
+.++++++..|.++..+..++.++...|+.++|++.+++..+..
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999988754
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=3.4e-15 Score=166.41 Aligned_cols=438 Identities=13% Similarity=-0.003 Sum_probs=295.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 005476 88 AYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYA 167 (695)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 167 (695)
.+......+.+.|++++|+..|++..+ ..|+...|..+..++...|++++|.+.+...++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 456677788899999999999999887 56777888888889999999999999999988874 445678888999999
Q ss_pred hcCChhHHHHHHhccCCCC---eehHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHhccCChhHHH
Q 005476 168 NCGRIDIARKMFDRMSNRD---VFSWNSMFSGYVKTECWREIVDLFNEMRDLG--VKFDEVTLINVLMACGRLADIELGG 242 (695)
Q Consensus 168 ~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~ 242 (695)
..|++++|..-|......+ ......++.-+.. ..+........+.. ..|........+... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcch
Confidence 9999999988776543211 1111122221111 22223233332221 111111111222111 111111
Q ss_pred HHHHHHHHhCCCCc-hHHHHHHHHH---HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005476 243 WISEYMEEKELNGN-VKLMTAVVDM---YAKCGHVDKARRLFEQMNIK------DVVAWSAMISGYSQARRCKEALGVFH 312 (695)
Q Consensus 243 ~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (695)
.-+....+ ..+. ...+..+... ....+++++|.+.|+..... +...|+.+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11111111 1111 0111111111 12346788888888876532 44578888888888999999999998
Q ss_pred HhHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CC
Q 005476 313 DMQMANVVPN-EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KN 388 (695)
Q Consensus 313 ~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 388 (695)
+.... .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++... .+
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 88765 454 4577777778888899999999998888764 44567888888899999999999999988754 35
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC--h-----
Q 005476 389 VFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR--M----- 460 (695)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~----- 460 (695)
...|..+...+.+.|++++|+..|++... ..|+ ...+..+...+...|++++|.+.|+.... +.|+ .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~ 507 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccH
Confidence 66778888889999999999999999887 4565 45788888899999999999999998764 2332 1
Q ss_pred -hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 005476 461 -EHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYA 537 (695)
Q Consensus 461 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (695)
..++.....+...|++++|.+++++. ...|+ ...+..+...+.+.|++++|...+++++++.+.... ..
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e--------~~ 579 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE--------LV 579 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH--------HH
Confidence 12233333455579999999999885 45564 457888999999999999999999999998765332 12
Q ss_pred HcCCHHHHHHHHHHHHh
Q 005476 538 SAGRCEDALRVMNQMRE 554 (695)
Q Consensus 538 ~~g~~~~a~~~~~~m~~ 554 (695)
....+.+|.++.....+
T Consensus 580 ~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 580 QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23345556665544443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.1e-15 Score=169.85 Aligned_cols=349 Identities=12% Similarity=0.055 Sum_probs=275.3
Q ss_pred HhCCChhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 005476 198 VKTECWREIVDLFNEMRDL--GVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDK 275 (695)
Q Consensus 198 ~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 275 (695)
.+..+|+.-.-+|..-.+. .-.-+..-...++..+.+.|+++.|..++..++..... +......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3455555544444443221 11123334666788888999999999999999887533 45556666677788999999
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 005476 276 ARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN-EVTMVSVLSCCAVLGALETGKWVHLYVKK 351 (695)
Q Consensus 276 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 351 (695)
|...|+++.. .+...|..+...+.+.|++++|+..|++.... .|+ ...+..+...+...|+.++|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999863 35678899999999999999999999999875 454 55777888899999999999999998877
Q ss_pred hCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 005476 352 KRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLK----NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVA 426 (695)
Q Consensus 352 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 426 (695)
....+.. .+..+. .+.+.|++++|...++.+... +...+..+...+...|++++|+..|+++.+ ..|+ ...
T Consensus 173 ~~P~~~~-a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~ 248 (656)
T PRK15174 173 EVPPRGD-MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAAL 248 (656)
T ss_pred hCCCCHH-HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHH
Confidence 6544333 333333 478899999999999987543 233445556788899999999999999998 4565 447
Q ss_pred HHHHHHHHhccccHHH----HHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHH
Q 005476 427 FIAVLSACSHVGMVDE----GRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLL 499 (695)
Q Consensus 427 ~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 499 (695)
+..+...+...|++++ |...|+.+.+ +.| +...+..+...+.+.|++++|...+++. ...| +...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7788889999999986 8999998874 345 5778999999999999999999999886 3455 456778888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 500 AACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 500 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
.++...|++++|...++++++.+|+++..+..++.++...|++++|...+++..+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 899999999999999999999999887767778889999999999999999988754
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.5e-14 Score=161.08 Aligned_cols=436 Identities=13% Similarity=0.076 Sum_probs=271.6
Q ss_pred HHccCCCCCHHHHHHHhccCCCCCcc---hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChH
Q 005476 62 AAILIPATTMDYALSIFHKINEPDSS---AYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALE 138 (695)
Q Consensus 62 y~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 138 (695)
..+. |+++.|+..|++..+.++. ....++..+...|+.++|+..+++.... -.........+...+...|+++
T Consensus 44 ~~r~---Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARA---GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhC---CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 3455 8888888888777542222 1236777777778888888888777621 1112222222344666778888
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHh--CCChhHHHHHHHHHHHc
Q 005476 139 EGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVK--TECWREIVDLFNEMRDL 216 (695)
Q Consensus 139 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 216 (695)
.|.++++.+++.. +.++.++..|+..|...++.++|+..++++...+......+..+|.. .++..+|++.++++.+.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 8888888887765 44566666777777788888888888877765333322223334333 45555577777777765
Q ss_pred CCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 005476 217 GVKFD-EVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMI 295 (695)
Q Consensus 217 g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 295 (695)
.|+ ...+..+..+..+.|-...|.++...- |+.++-...... +.+.|.+..+.-..+.
T Consensus 199 --~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~-------- 257 (822)
T PRK14574 199 --APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPT-------- 257 (822)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhccccc--------
Confidence 343 333455555666666555555444331 111111100000 0111111111110000
Q ss_pred HHHHhcCC---HHHHHHHHHHhHHC-CCCCCH-H----HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhc
Q 005476 296 SGYSQARR---CKEALGVFHDMQMA-NVVPNE-V----TMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMD 366 (695)
Q Consensus 296 ~~~~~~g~---~~~A~~~~~~m~~~-g~~pd~-~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 366 (695)
-....+ .+.|+.-++.+... +-.|.. . ...--+-++...++..++...++.+...+.+....+-.++.+
T Consensus 258 --~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 258 --RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred --ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 001111 24455555554431 112321 1 122334566777888888888888888777666677788888
Q ss_pred chhhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------CCCCH
Q 005476 367 FYAKCGLIENAVEVFKKMPLK---------NVFFWTVLIQCLASNGQGERALETYYIMREKN-------------IEPND 424 (695)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~ 424 (695)
+|...+++++|..+|.++... +......|.-+|...+++++|..+++++.+.- ..||-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 888888888888888876431 22234667888888999999999999888731 12333
Q ss_pred H-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHH
Q 005476 425 V-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAA 501 (695)
Q Consensus 425 ~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a 501 (695)
. .+..+...+...|++.+|++.++.+.. .-+-|......+.+++...|++.+|++.++.. ...|+ ..+......+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 3 334456667888999999999999864 34447888889999999999999999999775 34564 4566677777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcc
Q 005476 502 CRAHKNVKVGEESLKNLVTLEPMHSG 527 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (695)
....+++++|..+.+.+++..|+++.
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 88889999999999999999998874
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2.4e-14 Score=159.43 Aligned_cols=430 Identities=9% Similarity=-0.010 Sum_probs=288.2
Q ss_pred HHcCCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHH--HHHHHhcCC
Q 005476 96 FTLKQSPQEAVMLYKTMLQNSVEPDR--FTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTL--IHLYANCGR 171 (695)
Q Consensus 96 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L--i~~y~~~g~ 171 (695)
..++|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++.... +.+...+..+ ...|...|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~---p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS---SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHcCC
Confidence 45778888888888888774 3443 233 667777777888888888777761 1122333333 557777788
Q ss_pred hhHHHHHHhccCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 005476 172 IDIARKMFDRMSN--R-DVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYM 248 (695)
Q Consensus 172 ~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 248 (695)
+++|..+|+++.+ | +...+..++..|.+.++.++|++.++++... .|+...+..++..+...++...|.+.++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888887765 2 3445566667777788888888888887664 455555544433343445554577777777
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCH---H
Q 005476 249 EEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK-DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNE---V 324 (695)
Q Consensus 249 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~ 324 (695)
.+.. +.+...+..++....+.|-...|.++..+-+.- +...+.- + +.+.|.+. ++.+..|+. .
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~-l-------~~~~~a~~----vr~a~~~~~~~~~ 262 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ-L-------ERDAAAEQ----VRMAVLPTRSETE 262 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH-H-------HHHHHHHH----Hhhcccccccchh
Confidence 7764 445666777777777777777777766654421 1111100 0 01111111 111111110 0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHh-CC-CCc-hHHHhHH---hcchhhcCCHHHHHHHHhcCCCC----ChhHHHH
Q 005476 325 TMVSVLSCCAVLGALETGKWVHLYVKKK-RM-ELT-ITLGTAL---MDFYAKCGLIENAVEVFKKMPLK----NVFFWTV 394 (695)
Q Consensus 325 t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~-~~~-~~~~~~l---i~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~ 394 (695)
-|. -.+.+..-++.+... +- ++. .....+. +-++.+.|++.++.+.|+.+... ...+-.+
T Consensus 263 r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 263 RFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred hHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 111 123344444444431 11 221 1112233 34567889999999999999853 3345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcC----------CCCC
Q 005476 395 LIQCLASNGQGERALETYYIMREKN-----IEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFD----------LEPR 459 (695)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~ 459 (695)
+.++|...+++++|+.+|+++.... ..++......|.-++...+++++|..+++.+.+... -.|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 8899999999999999999997643 122333457889999999999999999999975211 0122
Q ss_pred ---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHH
Q 005476 460 ---MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSD 534 (695)
Q Consensus 460 ---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (695)
...+..++..+...|++.+|++.++++ ...| |...+..+...+...|++..|++.++.+..++|++..+....+.
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 234556788899999999999999998 3344 78888999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 005476 535 IYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 535 ~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
.+...|+|++|..+.+...+..
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999998887653
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.7e-14 Score=148.43 Aligned_cols=497 Identities=12% Similarity=0.037 Sum_probs=320.5
Q ss_pred cCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHH---HHc---CCCchHHHHHHHHHHhCCCCCC
Q 005476 47 RFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRA---FTL---KQSPQEAVMLYKTMLQNSVEPD 120 (695)
Q Consensus 47 g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~---~~~---~g~~~~A~~~~~~m~~~g~~p~ 120 (695)
...+|+.+... ..+.++ |+.+.|+..|.+..+-|+..-++++.. -.. ...+..++.++...-... .-|
T Consensus 196 ~~~aD~rIgig--~Cf~kl---~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~n 269 (1018)
T KOG2002|consen 196 ACKADVRIGIG--HCFWKL---GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NEN 269 (1018)
T ss_pred ccCCCccchhh--hHHHhc---cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCC
Confidence 33455544332 344566 777777777776655444333333321 111 123344555554444321 125
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHhcCChhHHHHHHhccCC--CC--eehHHHHH
Q 005476 121 RFTFACTLKACSRIRALEEGEQIHAQILKSGFG--CRQLVTNTLIHLYANCGRIDIARKMFDRMSN--RD--VFSWNSMF 194 (695)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~--~~~~~~li 194 (695)
+...+.|.+-+...|+++.+..+...++..... .-...|--+..+|-..|++++|...|.+... +| +..+--+.
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 556666777777777777777777777665311 1123355667777777777777777766544 22 23344466
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccC----ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 005476 195 SGYVKTECWREIVDLFNEMRDLGVKFD-EVTLINVLMACGRLA----DIELGGWISEYMEEKELNGNVKLMTAVVDMYAK 269 (695)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 269 (695)
..|.+.|+.+.+...|+...+. .|| ..|...+...|+..+ ..+.|..+.....+.- +.|...|-.+..+|-.
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 7777777777777777777664 343 344445555555443 3344555555554442 4466667666666654
Q ss_pred cCCHHHHHHHHHhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHC---CCCCCH-----H-HHHHHHHH
Q 005476 270 CGHVDKARRLFEQM--------NIKDVVAWSAMISGYSQARRCKEALGVFHDMQMA---NVVPNE-----V-TMVSVLSC 332 (695)
Q Consensus 270 ~g~~~~A~~~f~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~-----~-t~~~ll~a 332 (695)
..-+.. +.+|... ....+...|.+...+...|++++|...|.+.... ...+|. . +--.+...
T Consensus 427 ~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 433222 3333322 2345667788888888899999999988887654 122333 1 22233445
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHH
Q 005476 333 CAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERAL 409 (695)
Q Consensus 333 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 409 (695)
....++.+.|.+.|..+.+... .-+..|-.|.-+-...+...+|...++.... .|+..|+.+...+.....+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 5667788889999988887641 1122222222222233566788888877653 57788888887888888888888
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 005476 410 ETYYIMREKN-IEPNDVAFIAVLSACSH------------VGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLV 476 (695)
Q Consensus 410 ~l~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (695)
+-|....+.- ..+|..+..+|.+.|.. .+..++|+++|.++++ ..+.|...-|.+.-.++..|++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCc
Confidence 8777665532 34677777777776543 2457888999988875 3455788889999999999999
Q ss_pred HHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 005476 477 EEAYQFIKNMP--IPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLE--PMHSGDYILLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 477 ~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 552 (695)
.+|.++|.+.. ...+..+|-.+...|...|++..|+++|+..++.. .+++.....|+.++.+.|+|.+|.+.....
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999872 23356789999999999999999999999999853 355667889999999999999999998877
Q ss_pred HhCC
Q 005476 553 REQG 556 (695)
Q Consensus 553 ~~~~ 556 (695)
....
T Consensus 743 ~~~~ 746 (1018)
T KOG2002|consen 743 RHLA 746 (1018)
T ss_pred HHhC
Confidence 6643
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.1e-13 Score=145.18 Aligned_cols=478 Identities=13% Similarity=0.059 Sum_probs=305.8
Q ss_pred HHHHHHHhccCCCCCcc-hHHHHHHHH--HcCCCchHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005476 71 MDYALSIFHKINEPDSS-AYNIMIRAF--TLKQSPQEAVMLYKTMLQN--SVEPDRFTFACTLKACSRIRALEEGEQIHA 145 (695)
Q Consensus 71 ~~~A~~~f~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (695)
++.|...|..+...++. ..-.|..++ ...+++..|+.+|...... ...||... .+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46666666655421111 122333332 3356777777777775542 23344332 12234456677777777777
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhc---CChhHHHHHHhccC---CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 005476 146 QILKSGFGCRQLVTNTLIHLYANC---GRIDIARKMFDRMS---NRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVK 219 (695)
Q Consensus 146 ~~~~~g~~~~~~~~~~Li~~y~~~---g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 219 (695)
...+.. +.++.++-.|.-+-... ..+..+..++.+.- ..|++..+.|.+.|.-.|+++.++.+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 776543 11222222221111111 22334444444332 247778888888888889999999888888764311
Q ss_pred --CCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHH
Q 005476 220 --FDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---KDVVAWSAM 294 (695)
Q Consensus 220 --pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~l 294 (695)
.-...|-.+.+++-..|+++.|.+.|-...+..-..-+..+-.|..+|.+.|+++.|...|+.+.. .+..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 112237778888888899999999888877764222245566788899999999999999988753 355666777
Q ss_pred HHHHHhcC----CHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH----HHhCCCCchHHHhHHhc
Q 005476 295 ISGYSQAR----RCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYV----KKKRMELTITLGTALMD 366 (695)
Q Consensus 295 i~~~~~~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~~~~~~~~~~~~~li~ 366 (695)
...|...+ ..+.|..++.+..+.- +.|...|..+-..+... +.......+..+ ...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 77777665 4466666666665542 33555666555555443 333335555443 34565678888899999
Q ss_pred chhhcCCHHHHHHHHhcCCC-------CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 005476 367 FYAKCGLIENAVEVFKKMPL-------KNV------FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLS 432 (695)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 432 (695)
.+...|+++.|...|..... +|. ..--.+...+-..++.+.|.++|..... -.|+.+ .|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhhH
Confidence 99999999999998876542 222 1222345566677888999999999888 567776 5555553
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh----CCCCCCHhhHHHHHHHHH-----
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKN----MPIPPNPVIWRTLLAACR----- 503 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~p~~~~~~~ll~a~~----- 503 (695)
.....+...+|...+..... ....++..++-+.+.+.+...+.-|.+-|+. ....+|..+.-+|.+.|.
T Consensus 539 ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 33345778888888888765 4555666677777788887777777774443 333467777666766553
Q ss_pred -------hcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 504 -------AHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 504 -------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
..+..++|+++|.++++.+|.|..+-+.++-+++..|+|.+|..+|.+..+...
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 223467888888888888888877777888888888888888888888887644
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.5e-12 Score=124.82 Aligned_cols=417 Identities=14% Similarity=0.136 Sum_probs=247.4
Q ss_pred ChHHHHHHhcc--CCChHHHHHHHHHHhcCCCCchhHHHHHHHHHc--cC------------------------CCCCHH
Q 005476 21 NPKTLIVQQCK--TTKDLNQVHAHLIKSRFHLNPTISENLLEAAAI--LI------------------------PATTMD 72 (695)
Q Consensus 21 ~~~~~~l~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~--~~------------------------~~g~~~ 72 (695)
+|-+.|++.-+ ...+.--++.++...|.+.++-+--.|+..-+- .. +.|.
T Consensus 117 ~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~-- 194 (625)
T KOG4422|consen 117 ETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA-- 194 (625)
T ss_pred cchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc--
Confidence 35566665533 233445678888888888777776666543221 10 0111
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 005476 73 YALSIFHKINEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGF 152 (695)
Q Consensus 73 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 152 (695)
-|.-+|+. ..++..+|..||.++++-...+.|.++|++-.....+.+..+||.+|.+.+ +..++.+..+|+...+
T Consensus 195 vAdL~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhc
Confidence 12233333 334556788888888888888888888888888777888888888887765 3344788888888888
Q ss_pred CCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005476 153 GCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMAC 232 (695)
Q Consensus 153 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 232 (695)
.||..++|+++++.++.|+++.|++.+ ++++.+|++-|+.|...+|..+|..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 888888888888888888888776543 44555555566666666655555555
Q ss_pred hccCChhH-HHHHHHHHHHh----CCC----CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHH
Q 005476 233 GRLADIEL-GGWISEYMEEK----ELN----GNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK-----------DVVAWS 292 (695)
Q Consensus 233 ~~~~~~~~-a~~~~~~~~~~----g~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----------~~~~~~ 292 (695)
.+.++... +..+...+... .+. .|...+..-++.+.+..+.+-|.++-.-+... ...-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 55544432 22222222221 111 13334444555555555555555554433211 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcC
Q 005476 293 AMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCG 372 (695)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (695)
.+....++....+.-+.+|+.|.-.-+-|+..+...++++....+.++...+++..++..|.........-+...+++..
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 56667778888888899999998887889999999999999999999999999988888774433332222221111111
Q ss_pred CHHHHHHHHhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 005476 373 LIENAVEVFKKMPLKNVF---FWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVS 449 (695)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (695)
..|+.. -+.....-++. .-.+.....-.+|++....|. ..+.++-.+.+.|..++|.++|..
T Consensus 483 ------------~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l 547 (625)
T KOG4422|consen 483 ------------LHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGL 547 (625)
T ss_pred ------------CCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHH
Confidence 012211 11111111110 001111222334555444443 444455556788888888888888
Q ss_pred chhhcCCCCChhHHHHHH---HHHhhcCCHHHHHHHHHhC
Q 005476 450 MSRDFDLEPRMEHYGCMV---DILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 450 ~~~~~~~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~m 486 (695)
+.++..-.|.....++|+ +.-.+......|...++-|
T Consensus 548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 766544455555555443 3444555666666655554
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.3e-13 Score=134.17 Aligned_cols=444 Identities=14% Similarity=0.110 Sum_probs=305.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHH-HHHHHHhccCChHHHHHHHHHHHHhCCCC----CccHHHHHHHHH
Q 005476 92 MIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFA-CTLKACSRIRALEEGEQIHAQILKSGFGC----RQLVTNTLIHLY 166 (695)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~Li~~y 166 (695)
|.+-|..+....+|+..|+-+.+...-||.-.+. .+-+.+.+.+.+..|.+.+...+..-... .+.+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3455777888899999999988877777765433 23345667788899999888777652111 233456666667
Q ss_pred HhcCChhHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCC------------CCHhHHHHHHH--
Q 005476 167 ANCGRIDIARKMFDRMSN--RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVK------------FDEVTLINVLM-- 230 (695)
Q Consensus 167 ~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------pd~~t~~~ll~-- 230 (695)
.+.|.+++|...|+...+ |+..+--.|+-++.--|+.++..+.|.+|..--.. |+....+..+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999998655 66665555566666778999999999999764333 33333332222
Q ss_pred ---HHhccCC--hhHHHHHHHHHHHhCCCCchH-------------HH--------HHHHHHHHhcCCHHHHHHHHHhcC
Q 005476 231 ---ACGRLAD--IELGGWISEYMEEKELNGNVK-------------LM--------TAVVDMYAKCGHVDKARRLFEQMN 284 (695)
Q Consensus 231 ---a~~~~~~--~~~a~~~~~~~~~~g~~~~~~-------------~~--------~~li~~~~~~g~~~~A~~~f~~m~ 284 (695)
-..+.+. .+.+.-.-..++.--+.|+-. .+ -.-..-|.+.|+++.|.+++.-..
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111 111111111111111122110 00 111234778999999999988887
Q ss_pred CCChhHHHH-----HHHHHHhcC-CHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 005476 285 IKDVVAWSA-----MISGYSQAR-RCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTI 358 (695)
Q Consensus 285 ~~~~~~~~~-----li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 358 (695)
.+|..+-.+ -.--|.+-| ++..|.+.-+...... +-|....+.--+.....|+++.|...+.+.....-....
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 665433222 222233333 4566666555444322 223333333333344578999999999999987766666
Q ss_pred HHHhHHhcchhhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005476 359 TLGTALMDFYAKCGLIENAVEVFKKMP---LKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP-NDVAFIAVLSAC 434 (695)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 434 (695)
..|| +.-.+-+.|++++|++.|-.+. ..++...-.+...|....+..+|++++.+... +-| |+..+..|...|
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 6666 4556788999999999997664 35677777788889999999999999987766 555 556888889999
Q ss_pred hccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHH-HhcCChhHHH
Q 005476 435 SHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWRTLLAAC-RAHKNVKVGE 512 (695)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~-~~~g~~~~a~ 512 (695)
-+.|+-.+|.+.+-.--+ -++.+.++..-|...|....-+++|+.+|++. -+.|+.+-|..++..| ++.|++++|.
T Consensus 603 dqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999998765432 23447888888899999999999999999987 4689999999998875 6789999999
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHcCC
Q 005476 513 ESLKNLVTLEPMHSGDYILLSDIYASAGR 541 (695)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (695)
.+++..-...|.+....-.|..++...|.
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999998899999888885
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=3.5e-12 Score=123.77 Aligned_cols=318 Identities=14% Similarity=0.163 Sum_probs=222.3
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCChHHH-HHHHHHHHHhCCCCCccHHHHH
Q 005476 86 SSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACS--RIRALEEG-EQIHAQILKSGFGCRQLVTNTL 162 (695)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L 162 (695)
+++=|.|+. +...|..+++.-+|+.|+..|+..+...-..|++..+ ...+..-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345566655 4567889999999999999988777766666655433 22333222 23444455554 2223332
Q ss_pred HHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHH
Q 005476 163 IHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGG 242 (695)
Q Consensus 163 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 242 (695)
|.|.+.+ -+| +...++..+|..||.|+++--..+.|.+++++-.....+.+..+|+.+|.+.+- ..++
T Consensus 191 -----K~G~vAd--L~~-E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLF-ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHH-hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 4455544 344 444457789999999999999999999999999998889999999999987653 3448
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH----hcC----CCChhHHHHHHHHHHhcCCHHH-HHHHHHH
Q 005476 243 WISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFE----QMN----IKDVVAWSAMISGYSQARRCKE-ALGVFHD 313 (695)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 313 (695)
++..+|....+.||..++|+++.+..+.|+++.|++.+- +|. +|...+|..+|..+.+.++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999999887766544 443 5677888888888888887754 4555555
Q ss_pred hHHC--C--C---CC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhC----CCCc---hHHHhHHhcchhhcCCHHHHH
Q 005476 314 MQMA--N--V---VP-NEVTMVSVLSCCAVLGALETGKWVHLYVKKKR----MELT---ITLGTALMDFYAKCGLIENAV 378 (695)
Q Consensus 314 m~~~--g--~---~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~ 378 (695)
++.. | + .| |..-|.+.+..|.+..+.+.|.+++....... +.++ ...|.-+....+....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 1 2 23 45577888888988899999988887765421 2222 234455666666777777777
Q ss_pred HHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005476 379 EVFKKMPL----KNVFFWTVLIQCLASNGQGERALETYYIMREKNI 420 (695)
Q Consensus 379 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 420 (695)
..|+.|.. |+..+...++.+..-.|.++-.-+++..|+..|.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 77777653 4555566666666667777766677777666553
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=6.3e-11 Score=121.04 Aligned_cols=455 Identities=15% Similarity=0.120 Sum_probs=250.0
Q ss_pred cCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHH
Q 005476 98 LKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARK 177 (695)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 177 (695)
.....+.|+-++.+..+- -|.. .-|.-++++..-++.|+.++....+. ++.+..+|-+-...=-..|..+...+
T Consensus 388 elE~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 344555566666665552 2211 12333445555566666666665554 35555555555555555666666655
Q ss_pred HHhccCC--------CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhcc------------
Q 005476 178 MFDRMSN--------RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFD--EVTLINVLMACGRL------------ 235 (695)
Q Consensus 178 ~f~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~------------ 235 (695)
+.++-.. -+...|-.=...+-..|..-.+..+....+.-|+.-. ..||......|.+.
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 5554221 1222233333333333444334444433333333221 12344444444444
Q ss_pred ----------------------CChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhH
Q 005476 236 ----------------------ADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---KDVVA 290 (695)
Q Consensus 236 ----------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~ 290 (695)
|..+.-..+++.++..- +.....|-....-+-..|++..|+.++.+.-+ .+...
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 44444444554444431 22333444444444555555555555555432 13445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhh
Q 005476 291 WSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAK 370 (695)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 370 (695)
|-+-+..-..+.+++.|..+|.+.... .|+...|..-...---++..++|.+++++.++. ++.-...|-.+...|-+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHH
Confidence 555555555566666666666555543 344444433333333445555666655555543 23334455555555566
Q ss_pred cCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 005476 371 CGLIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELF 447 (695)
Q Consensus 371 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (695)
.++++.|.+.|..-.+ | .+-.|-.+...=-+.|+...|..++++.+..+ +-|...|...+..-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665554433 2 22345555555555556666666666655532 123335555666666666666666666
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 005476 448 VSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG 527 (695)
Q Consensus 448 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (695)
.+..+ ..+.+...|..-|.+..+.++-..+.+.+++. +.|..+.-++...+.....++.|.+-|+++++.+|++..
T Consensus 777 akALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 55554 33444555555566666666555555555554 345566666777788888999999999999999999999
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCceeEEEEC
Q 005476 528 DYILLSDIYASAGRCEDALRVMNQMREQGIKKTPGCSLIELD 569 (695)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 569 (695)
+|.-+-..+...|.-++-.+++++.... .|..|-.|..+.
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 9999999999999999999999887653 466677776543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=9.2e-11 Score=124.65 Aligned_cols=471 Identities=11% Similarity=0.053 Sum_probs=281.6
Q ss_pred CCHHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005476 69 TTMDYALSIFHKINE---PDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHA 145 (695)
Q Consensus 69 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (695)
|++++|.+++.++.. .+...|.+|...|-+.|+.++++..+-..-... +-|...|..+-.-..+.|.+++|.-.+.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999999988753 466789999999999999999988776665532 2266788888888889999999999999
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCe-ehHH-------HHHHHHHhCCChhHHHHHHHHHHHc-
Q 005476 146 QILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDV-FSWN-------SMFSGYVKTECWREIVDLFNEMRDL- 216 (695)
Q Consensus 146 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~- 216 (695)
++++.. +++....-.-..+|-+.|+...|..-|.++-+.+. +.|. .++..|...++-+.|++.++.....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 999886 56666666677889999999999888887765222 2221 2355666677778888888777652
Q ss_pred CCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH---------------------------hCCCCchHH-HHHHHHHHH
Q 005476 217 GVKFDEVTLINVLMACGRLADIELGGWISEYMEE---------------------------KELNGNVKL-MTAVVDMYA 268 (695)
Q Consensus 217 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---------------------------~g~~~~~~~-~~~li~~~~ 268 (695)
+-..+..+++.++..+.+...++.+......... .++.++..+ ...+.-.-.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2233334455556666666666666555544443 112333333 222222223
Q ss_pred hcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 005476 269 KCGHVDKARRLFEQMNI----KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKW 344 (695)
Q Consensus 269 ~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 344 (695)
+.+...+++.-|-.... .+...|.-+..+|.+.|++.+|+.+|..+......-+...|..+...+-..|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 34444444444433221 24456777778888888888888888888776555566677777888888888888888
Q ss_pred HHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChh------------HHHHHHHHHHhcCChHHHHHHH
Q 005476 345 VHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVF------------FWTVLIQCLASNGQGERALETY 412 (695)
Q Consensus 345 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~l~ 412 (695)
.+..++... +.+..+--+|...|.+.|+.++|.+.+..+..+|.. .--.....|.+.|+.++=+.+-
T Consensus 471 ~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 471 FYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888887754 334455556777788888888888888887655411 1112234456666666544444
Q ss_pred HHHHHCC----------------------CCCCHHHHHHHHHHHhccccHHHHHHHHH-----HchhhcCCCCC--hhHH
Q 005476 413 YIMREKN----------------------IEPNDVAFIAVLSACSHVGMVDEGRELFV-----SMSRDFDLEPR--MEHY 463 (695)
Q Consensus 413 ~~m~~~g----------------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~-----~~~~~~~~~p~--~~~~ 463 (695)
.+|+..+ ..-...+...++.+-.+.++.....+-.. ......++.-+ -..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 3333211 11111122222222222222111111000 00011122222 2345
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-----CCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCcccHH
Q 005476 464 GCMVDILGRAGLVEEAYQFIKNMP-----IPPNP---VIWRTLLAACRAHKNVKVGEESLKNLVTL-----EPMHSGDYI 530 (695)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 530 (695)
.-++..+.+.|++++|+.+...+- ..++. ..=...+.++...+++..|....+.++.. +|.....|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 556667777777777777666541 11111 11223444556667777777777766665 444444455
Q ss_pred HHHHHHHHcCCH
Q 005476 531 LLSDIYASAGRC 542 (695)
Q Consensus 531 ~l~~~~~~~g~~ 542 (695)
...+...+.|+-
T Consensus 710 ~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 710 LDFSYFSKYGQR 721 (895)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1e-09 Score=112.44 Aligned_cols=416 Identities=10% Similarity=0.067 Sum_probs=333.8
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhH
Q 005476 129 KACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWRE 205 (695)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 205 (695)
++.....+.+.|+-++...++.- +.+.. |.-+|++...++.|.++++...+ .+...|.+-...=-.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 44445566777888888888763 33333 44556777888999999887765 466778777666678899988
Q ss_pred HHHHHHH----HHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCHHHHHHH
Q 005476 206 IVDLFNE----MRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNG--NVKLMTAVVDMYAKCGHVDKARRL 279 (695)
Q Consensus 206 A~~~~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~ 279 (695)
..+++.+ +...|+..+...|..=..+|-..|..-.+..+...++..|++. -..+|+.-.+.+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 8888766 4568999999999999999999999999999999999888765 356889999999999999999999
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 005476 280 FEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN-EVTMVSVLSCCAVLGALETGKWVHLYVKKKRME 355 (695)
Q Consensus 280 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 355 (695)
|....+ .+...|...+..--..|..++-..+|++.... .|- ...+.....-.-..|+...|+.++..+.....
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p- 615 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP- 615 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-
Confidence 988754 36678888877777889999999999999876 343 33443334455567999999999999998763
Q ss_pred CchHHHhHHhcchhhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 005476 356 LTITLGTALMDFYAKCGLIENAVEVFKKMPL--KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLS 432 (695)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 432 (695)
.+..++-+-+..-.....++.|+.+|.+... +....|.--+....-.+..++|++++++.++ .-|+-. .|..+..
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQ 693 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhH
Confidence 3788888999999999999999999988754 6777888777777788999999999999988 678766 7778888
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhH
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMP--IPPNPVIWRTLLAACRAHKNVKV 510 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~ 510 (695)
.+.+.++++.|.+.|..=.+ ..+-.+..|-.|.+.=-+.|.+-.|..++++.. .+.|...|-..+..-.+.|+.+.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 89999999999999876654 344457788889999999999999999999873 23378899999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------------------------cccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 511 GEESLKNLVTLEPMH------------------------------SGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 511 a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
|..+..++++--|.+ +.....++.++....+++.|++.|.+..+.+
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999998888754433 4455677788888889999999999887754
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.1e-11 Score=118.58 Aligned_cols=404 Identities=14% Similarity=0.097 Sum_probs=244.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-ccHHHHHHHHH
Q 005476 89 YNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPD-RFTFACTLKACSRIRALEEGEQIHAQILKSGFGCR-QLVTNTLIHLY 166 (695)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y 166 (695)
+-....-|.++|.+++|++.|.+..+ ..|| +..|...-.+|...|+++.+.+--...++. .|+ +-.+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 44556668899999999999999998 5677 778888888889999999888877777654 344 34566666777
Q ss_pred HhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHH--------HH-c--CCCCCHhHHHHHHHHHhcc
Q 005476 167 ANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEM--------RD-L--GVKFDEVTLINVLMACGRL 235 (695)
Q Consensus 167 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~-~--g~~pd~~t~~~ll~a~~~~ 235 (695)
-..|++++|+.= +|-.++..++....-.--+.+++.+. .+ . -+-|+.....+.+..+-..
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 778888877531 23344444444433333333333331 11 1 1334444444444333211
Q ss_pred CChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHhcC-------CC---C------hhHHHHHHHHH
Q 005476 236 ADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKC-GHVDKARRLFEQMN-------IK---D------VVAWSAMISGY 298 (695)
Q Consensus 236 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~m~-------~~---~------~~~~~~li~~~ 298 (695)
-.. .+...+-..|...-..+=..|... ..+..|...+.+-. .. | ..+.+.-..-+
T Consensus 265 ~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 265 PKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 000 000000001111111111111111 11233333222210 00 1 11111111122
Q ss_pred HhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHH
Q 005476 299 SQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAV 378 (695)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (695)
.-.|+...|...|+..+.....++.. | --+..+|....+.++-.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-y-----------------------------------I~~a~~y~d~~~~~~~~ 380 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-Y-----------------------------------IKRAAAYADENQSEKMW 380 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-H-----------------------------------HHHHHHHhhhhccHHHH
Confidence 23444445555555544433222221 2 22333455555555555
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhc
Q 005476 379 EVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDF 454 (695)
Q Consensus 379 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 454 (695)
+.|+...+ .|..+|..-...+.-.+++++|..=|++.+. +.|+.+ .|..+--+.-+.+.+++++..|+...+
T Consensus 381 ~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-- 456 (606)
T KOG0547|consen 381 KDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-- 456 (606)
T ss_pred HHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 55554432 2444555555555666788999999999888 788655 888887788889999999999999986
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---------HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 005476 455 DLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN---------PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPM 524 (695)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 524 (695)
.++.-+++|+-....+...+++++|.+.|+.. .++|+ +.+-..++-.- -.+++..|+.+++++++++|.
T Consensus 457 kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 457 KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch
Confidence 56667889999999999999999999999875 33333 22233333332 348999999999999999999
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 525 HSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
..-+|..|+.+-...|+.++|+++|++...
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999998654
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=3.8e-14 Score=141.91 Aligned_cols=253 Identities=18% Similarity=0.166 Sum_probs=111.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHH-HHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHH
Q 005476 297 GYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLS-CCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIE 375 (695)
Q Consensus 297 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 375 (695)
.+.+.|++++|++++++......+|+...|..++. .+...++.+.|...++.+...+.. ++..+..++.. ...++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc
Confidence 34445555555555543322221233333332222 333445555555555555554322 34445556665 5778888
Q ss_pred HHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHchh
Q 005476 376 NAVEVFKKMPL--KNVFFWTVLIQCLASNGQGERALETYYIMREKN-IEPNDVAFIAVLSACSHVGMVDEGRELFVSMSR 452 (695)
Q Consensus 376 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 452 (695)
+|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.++...+
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888776533 466778888888999999999999999987643 344566777888888999999999999999975
Q ss_pred hcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccH
Q 005476 453 DFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM--PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDY 529 (695)
Q Consensus 453 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (695)
..| +......++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++|...++++.+.+|+|+...
T Consensus 175 ---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 ---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp ---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred ---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 356 4778889999999999999988877765 1234667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 530 ILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
..+++++...|+.++|.+++.+..+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999887643
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.4e-12 Score=131.33 Aligned_cols=277 Identities=15% Similarity=0.108 Sum_probs=219.8
Q ss_pred CHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHhcCCHHHHHHHHHHhHHCC-C-CCCHHHHHHHHHHHhccCChhHHHHHH
Q 005476 272 HVDKARRLFEQMNIK--DV-VAWSAMISGYSQARRCKEALGVFHDMQMAN-V-VPNEVTMVSVLSCCAVLGALETGKWVH 346 (695)
Q Consensus 272 ~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~pd~~t~~~ll~a~~~~~~~~~a~~i~ 346 (695)
+..+|...|..++.. |+ ....-+..+|...+++++|.++|+...+.. . .-+..+|+++|..+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 467888888886543 33 344567788999999999999999987753 1 1255688888775532 1222222
Q ss_pred HHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005476 347 LYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLK---NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN 423 (695)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (695)
.+-.-.--+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223567899999999999999999999999998764 457788888888889999999999999887 7777
Q ss_pred HH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHH
Q 005476 424 DV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLL 499 (695)
Q Consensus 424 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 499 (695)
.. .|..+...|.+.++++.|.-.|+.+. .+.| +.....++...+-+.|+.|+|+.++++. ...| |+..----.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 66 88899999999999999999999886 5677 5677788889999999999999999987 3333 333333345
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 500 AACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 500 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
..+...+++++|.+.++++.++-|+++..|..++.+|-+.|+.+.|+.-|.-+.+-+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5567789999999999999999999999999999999999999999999988877543
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4.5e-11 Score=116.79 Aligned_cols=456 Identities=12% Similarity=0.061 Sum_probs=286.9
Q ss_pred CchhHHHHHHHHHccCCCCCHHHHHHHhccCCC----CCcchH-HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhh--
Q 005476 51 NPTISENLLEAAAILIPATTMDYALSIFHKINE----PDSSAY-NIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFT-- 123 (695)
Q Consensus 51 ~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~----~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-- 123 (695)
.-.+...|.+-|... ....+|+..++-+.. ||.-.. -.+...+.+...+..|+.+|+-.+..-...+..+
T Consensus 200 tfsvl~nlaqqy~~n---dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEAN---DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred hHHHHHHHHHHhhhh---HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 344555667777777 788888888876653 332211 1244557777888888888876665422223333
Q ss_pred --HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC----------------C
Q 005476 124 --FACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN----------------R 185 (695)
Q Consensus 124 --~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----------------~ 185 (695)
.+.+--.+.+.|.++.|..-|+...+. .|+..+.-.|+-++.--|+-++..+.|..|.. |
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 233333456778888888888887765 46766666666666667888888888877642 1
Q ss_pred CeehHHH-----HHHHHHhC--CChhHHHHHHHHHHHcCCCCCHhH-------------HH--------HHHHHHhccCC
Q 005476 186 DVFSWNS-----MFSGYVKT--ECWREIVDLFNEMRDLGVKFDEVT-------------LI--------NVLMACGRLAD 237 (695)
Q Consensus 186 ~~~~~~~-----li~~~~~~--g~~~~A~~~~~~m~~~g~~pd~~t-------------~~--------~ll~a~~~~~~ 237 (695)
+....|. ++.-.-+. .+.++++-.-.++..--+.||-.. +. .-...+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 2222221 11111111 112222222222222222233211 00 00123567788
Q ss_pred hhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--CCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005476 238 IELGGWISEYMEEKELNGNVKLMTAVVDMYAKC--GHVDKARRLFEQMNIK---DVVAWSAMISGYSQARRCKEALGVFH 312 (695)
Q Consensus 238 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (695)
++.|.+++....+..-..-....+.|...+.-. .++.+|...-+..... +..+...-...-..+|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 888888888887776554445555555555443 3566777666655432 22222222233346788899999888
Q ss_pred HhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CCh
Q 005476 313 DMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNV 389 (695)
Q Consensus 313 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~ 389 (695)
+.....-.-....|+.=+ .+...|++++|...|-.+... +..+..+...+.+.|--..+...|.+++.+... .|+
T Consensus 515 eal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH
Confidence 887654322223333222 346678888888776554332 234566666778888888889999988876643 577
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 005476 390 FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDI 469 (695)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 469 (695)
...+.+...|-+.|+-.+|.+.+-+--.- ++-|..|...|...|....-+++++.+|++.. -+.|+..-|..|+..
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmias 668 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHH
Confidence 88888889999999999998876654442 45566788888888888889999999999874 678999999888765
Q ss_pred H-hhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 005476 470 L-GRAGLVEEAYQFIKNM--PIPPNPVIWRTLLAACRAHKNVKVGEESLKNL 518 (695)
Q Consensus 470 ~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 518 (695)
| .|.|++.+|.++++.. .++.|.....-|+..|...|- ..+.+..+++
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 4 5689999999999887 455578888888888877763 3455554444
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=2.5e-10 Score=120.67 Aligned_cols=354 Identities=12% Similarity=0.024 Sum_probs=199.7
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHH
Q 005476 185 RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVV 264 (695)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 264 (695)
++..+|.+++..-.-+|+.+.|..++.+|++.|+..+..-|..++-+ .++......+...|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67778888888888888888888888888888888888877777755 677777888888888888888888888777
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC-----HHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCCh
Q 005476 265 DMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARR-----CKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGAL 339 (695)
Q Consensus 265 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 339 (695)
-.+.++|....+.+..+.-.--....+..+..+...+.+ ..-.+..+++..-.|+......|.... -....|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCC
Confidence 777665553322221110000011222333332111111 112223333333334333222332222 22335556
Q ss_pred hHHHHHHHHHHHhCCC---CchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHh---cCChHHHHHHH
Q 005476 340 ETGKWVHLYVKKKRME---LTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVF-FWTVLIQCLAS---NGQGERALETY 412 (695)
Q Consensus 340 ~~a~~i~~~~~~~~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~ 412 (695)
+...++-..+..-... .++..+. +.+.+.|.++..+... .++ .-.+... .....+..++.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~------------~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell 424 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFG------------ALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELL 424 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHH------------HHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHH
Confidence 6666665555432111 1122222 2234455554443221 111 1122221 11111111211
Q ss_pred HHH------------HH----CCCCC-------CHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 005476 413 YIM------------RE----KNIEP-------NDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDI 469 (695)
Q Consensus 413 ~~m------------~~----~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 469 (695)
... .. +-..| -...-+.++..|.+.-+..++...-+... ++-+ ...|..||+.
T Consensus 425 ~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l 500 (1088)
T KOG4318|consen 425 ENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKL 500 (1088)
T ss_pred HHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhh
Confidence 111 00 00111 01123344455555555555554443332 1122 2678999999
Q ss_pred HhhcCCHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcccHHHHHHHHHHcCC
Q 005476 470 LGRAGLVEEAYQFIKNMP-----IPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLE---PMHSGDYILLSDIYASAGR 541 (695)
Q Consensus 470 ~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~ 541 (695)
+....+.++|..+.++.. +.-|..-+..+.+...+++....+..+++++.+.- |.-..+..-+.+.-+..|+
T Consensus 501 ~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agq 580 (1088)
T KOG4318|consen 501 MDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQ 580 (1088)
T ss_pred HHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccC
Confidence 999999999999999872 22345556778888888999999999988887732 3334455677777888999
Q ss_pred HHHHHHHHHHHHhCCCcc
Q 005476 542 CEDALRVMNQMREQGIKK 559 (695)
Q Consensus 542 ~~~a~~~~~~m~~~~~~~ 559 (695)
.+.-.++++-+...|+.-
T Consensus 581 qe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 581 QEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999998888754
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=8.4e-11 Score=124.93 Aligned_cols=330 Identities=15% Similarity=0.170 Sum_probs=191.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 005476 201 ECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLF 280 (695)
Q Consensus 201 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 280 (695)
|+.++|.+++.+..+.. .-+...|..|...+-..|+.+.+...+-.+--. .+.|...|..+.+...+.|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 66666666666665542 223444666666666666666554443222221 2335556666666666666666666666
Q ss_pred HhcCCCChhHHHH---HHHHHHhcCCHHHHHHHHHHhHHCCCCCCHH-----HHHHHHHHHhccCChhHHHHHHHHHHH-
Q 005476 281 EQMNIKDVVAWSA---MISGYSQARRCKEALGVFHDMQMANVVPNEV-----TMVSVLSCCAVLGALETGKWVHLYVKK- 351 (695)
Q Consensus 281 ~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-----t~~~ll~a~~~~~~~~~a~~i~~~~~~- 351 (695)
.+..+.+..-|.. -+..|-+.|+...|++-|.++..... |... +.-.++..+...++-+.|.+++.....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 6654332222222 23445566666666666666655421 1111 111222333333333444333333332
Q ss_pred hCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------------
Q 005476 352 KRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREK------------- 418 (695)
Q Consensus 352 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------- 418 (695)
.+-..+.. .+|.++..|.+...++.|......+...
T Consensus 310 ~~~~~~~e-------------------------------d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 310 EKDEASLE-------------------------------DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred cccccccc-------------------------------HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 11122223 3444555555555555555555444441
Q ss_pred --------------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHH
Q 005476 419 --------------NIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDL--EPRMEHYGCMVDILGRAGLVEEAYQF 482 (695)
Q Consensus 419 --------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 482 (695)
++.++...+ .+.-+..+....+....+...... ..+ .-+...|.-+.++|.+.|++.+|+++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 122222221 111122333333333223222322 243 33578899999999999999999999
Q ss_pred HHhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 005476 483 IKNMP---IPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKK 559 (695)
Q Consensus 483 ~~~m~---~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 559 (695)
+..+- ...+...|--+...+...|.++.|.+.+++++.+.|++..+-+.|+.+|...|+.++|.+++..|...+-+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 99882 223577999999999999999999999999999999999999999999999999999999999887544444
Q ss_pred CCceeEE
Q 005476 560 TPGCSLI 566 (695)
Q Consensus 560 ~~~~s~~ 566 (695)
.+++.|-
T Consensus 517 ~e~~a~~ 523 (895)
T KOG2076|consen 517 AEACAWE 523 (895)
T ss_pred hhhcccc
Confidence 4556553
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=8.2e-12 Score=128.58 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=193.7
Q ss_pred CCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC--CCCchHHHhHHhcchhhcCCHHH-HH
Q 005476 302 RRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKR--MELTITLGTALMDFYAKCGLIEN-AV 378 (695)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~-A~ 378 (695)
-+.++|+..|.+.... +.-.......+..+|...+++++++.+|+.+.+.. .-.+..+|.+.+--+-+.=.+.- |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995443 33344667778889999999999999999998854 22456677766644433222211 22
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCC
Q 005476 379 EVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP-NDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLE 457 (695)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 457 (695)
.+.+ +....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|...+ +
T Consensus 412 ~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~-- 483 (638)
T KOG1126|consen 412 DLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G-- 483 (638)
T ss_pred HHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--
Confidence 2222 2234678999999999999999999999999999 888 45688888888888899999999998775 3
Q ss_pred CChhHHH---HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHH
Q 005476 458 PRMEHYG---CMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILL 532 (695)
Q Consensus 458 p~~~~~~---~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (695)
.|+.+|+ .|.-.|.|.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|++++++++.++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 4555555 4667899999999999999987 6677 556666777778999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 005476 533 SDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
+.++...+++++|++.++++++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH
Confidence 9999999999999999999987
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=6.1e-09 Score=102.94 Aligned_cols=476 Identities=12% Similarity=0.083 Sum_probs=340.0
Q ss_pred CCHHHHHHHhccCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005476 69 TTMDYALSIFHKIN---EPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHA 145 (695)
Q Consensus 69 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (695)
+++..|+.+|++.. .++...|---+..=.++.....|..+++.....-+..|.. |---+-.=-..|++..|+++|+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHHH
Confidence 67778999998875 3667778888888889999999999999988743333433 2222333345689999999999
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccC--CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHh
Q 005476 146 QILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS--NRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEV 223 (695)
Q Consensus 146 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 223 (695)
.-.+. .|+...|++.|+.=.+-..++.|+.++++.. .|++.+|--...-=.++|....|..+|....+. -.|..
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~ 241 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDE 241 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHH
Confidence 88765 7999999999999999999999999999854 589999988888888999999999999987663 12233
Q ss_pred H----HHHHHHHHhccCChhHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHH--------HhcCCC---
Q 005476 224 T----LINVLMACGRLADIELGGWISEYMEEKELNGN--VKLMTAVVDMYAKCGHVDKARRLF--------EQMNIK--- 286 (695)
Q Consensus 224 t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f--------~~m~~~--- 286 (695)
. |++....=.+...++.|.-++...++.- +.+ ...|..+...--+-|+.....+.. +.+...
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 3 3333333345567888888998888763 333 456666666656667655444332 222222
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCH-------HHHHHHHHHH---hccCChhHHHHHHHHHHHhCCCC
Q 005476 287 DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNE-------VTMVSVLSCC---AVLGALETGKWVHLYVKKKRMEL 356 (695)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~~~~~ 356 (695)
|-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.++++++..++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 5667888888778889999999999999865 56632 1222222222 356788999999998888 3455
Q ss_pred chHHHhHHhcchh----hcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 005476 357 TITLGTALMDFYA----KCGLIENAVEVFKKMPL--KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVAFIA 429 (695)
Q Consensus 357 ~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 429 (695)
...++.-+=-+|+ ++.++..|.+++..... |-...+...|..=.+.++++....+|++.++ ..|. ..+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence 5556555544554 67899999999987653 6667788888888899999999999999999 5664 458888
Q ss_pred HHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH-----
Q 005476 430 VLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWRTLLAACR----- 503 (695)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~----- 503 (695)
....-...|+.+.|..+|..++....+......|.+.|+-=...|.++.|..+++++ ...+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 777778899999999999999875444445667888888889999999999999987 33445567877765433
Q ss_pred hcC-----------ChhHHHHHHHHHHhc----CCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 504 AHK-----------NVKVGEESLKNLVTL----EPMHSG--DYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 504 ~~g-----------~~~~a~~~~~~~~~~----~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
+.+ +...|..+|+++... +|.... ..-.+.++-...|...+...+-++|.+
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 567888888888763 232211 122333444556666666666666543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1e-09 Score=108.19 Aligned_cols=312 Identities=10% Similarity=0.069 Sum_probs=221.5
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH-HHHHHHHHhcCCHHHHHH
Q 005476 231 ACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAW-SAMISGYSQARRCKEALG 309 (695)
Q Consensus 231 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~g~~~~A~~ 309 (695)
...+.|....|...+...+.. .+.....|..|.+ -..+.+.+..+....+..+...- -.+..+|....+.+++++
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~---lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSE---LITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHH---hhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655543 1333344443333 23344444444444443322211 123455666667888888
Q ss_pred HHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC--CchHHHhHHhcchhhcC--CHH-HHHHHHhcC
Q 005476 310 VFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRME--LTITLGTALMDFYAKCG--LIE-NAVEVFKKM 384 (695)
Q Consensus 310 ~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y~~~g--~~~-~A~~~~~~~ 384 (695)
-.......|++-+...-+....+.....++++|+.+|+.+.+...- .|..+|+-++ |.+.. ++. -|..++ .+
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~-~i 325 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVS-NI 325 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHH-Hh
Confidence 8888888876555554444445556778999999999999887421 2455665544 33332 221 122222 22
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhH
Q 005476 385 PLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEH 462 (695)
Q Consensus 385 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 462 (695)
.+--+.|.-.+..-|+-.++.++|...|++..+ +.|... .|+.+..-|....+...|.+-+..++ .+.| |-..
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRA 400 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRA 400 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHH
Confidence 222334444556677888899999999999998 777765 77778888999999999999999987 4445 7889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcC
Q 005476 463 YGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAG 540 (695)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (695)
|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|++++..+.-+..+|+.|+++|-+.+
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999987 5566 78899999999999999999999999999988777789999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 005476 541 RCEDALRVMNQMRE 554 (695)
Q Consensus 541 ~~~~a~~~~~~m~~ 554 (695)
+.++|.+.+++-.+
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998776
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=9.3e-11 Score=122.98 Aligned_cols=286 Identities=12% Similarity=0.032 Sum_probs=182.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCHHHHH
Q 005476 200 TECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVK--LMTAVVDMYAKCGHVDKAR 277 (695)
Q Consensus 200 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~ 277 (695)
.|++++|.+.+....+..-.| ...|.....+..+.|+.+.+...+..+.+. .|+.. ........+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555543321111 222333334445666666666666666554 33332 2223356777788888888
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 005476 278 RLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRM 354 (695)
Q Consensus 278 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 354 (695)
..++++.+ .+......+...|.+.|++++|++++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 88877653 25667777888888888888888888888877644222 1111100
Q ss_pred CCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005476 355 ELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVL 431 (695)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 431 (695)
..+..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+ ..||.... ++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HH
Confidence 0001111111222334555555665543 4666777788888888888888888888877 34554221 23
Q ss_pred HHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhH
Q 005476 432 SACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWRTLLAACRAHKNVKV 510 (695)
Q Consensus 432 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~ 510 (695)
.+....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344558888888888888753 3345667788888888999999998888886 567888888888888888999999
Q ss_pred HHHHHHHHHhcC
Q 005476 511 GEESLKNLVTLE 522 (695)
Q Consensus 511 a~~~~~~~~~~~ 522 (695)
|.+++++.+.+-
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999888887653
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=4.5e-10 Score=118.50 Aligned_cols=291 Identities=13% Similarity=0.072 Sum_probs=170.7
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 005476 198 VKTECWREIVDLFNEMRDLGVKFDEV-TLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKA 276 (695)
Q Consensus 198 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 276 (695)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3578888888888776664 34433 34444566667788888888888876653222233444457777778888888
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 005476 277 RRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKR 353 (695)
Q Consensus 277 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 353 (695)
...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++. +...+..+-. .
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~-~-------------------- 230 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ-K-------------------- 230 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH-H--------------------
Confidence 888777653 25566777777788888888888888887776533 2222211110 0
Q ss_pred CCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---
Q 005476 354 MELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAF--- 427 (695)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--- 427 (695)
.+..+++.-......+...+.++..+. .+...+..+...+...|+.++|.+++++..+ ..||....
T Consensus 231 ------a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~ 302 (409)
T TIGR00540 231 ------AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLP 302 (409)
T ss_pred ------HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhH
Confidence 000001000111223444455555553 3777788888888888888888888888887 44554421
Q ss_pred HHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHhhHHHHHHHHHh
Q 005476 428 IAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKN---MPIPPNPVIWRTLLAACRA 504 (695)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~a~~~ 504 (695)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111112234566666666666654322222214445666666666666666666662 2345666555566666666
Q ss_pred cCChhHHHHHHHHHHh
Q 005476 505 HKNVKVGEESLKNLVT 520 (695)
Q Consensus 505 ~g~~~~a~~~~~~~~~ 520 (695)
.|+.++|.+++++.+.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666544
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=8.1e-09 Score=102.10 Aligned_cols=388 Identities=14% Similarity=0.144 Sum_probs=263.6
Q ss_pred HhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHH
Q 005476 167 ANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGW 243 (695)
Q Consensus 167 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 243 (695)
...+++..|+.+|++... +++..|-..+..=.++.....|..++++....=...|..-| --+..=-..|++..|++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHH
Confidence 345667778888877654 56666777777777778888888888877664222233222 22223345678888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCC
Q 005476 244 ISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQM--NIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVP 321 (695)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 321 (695)
+|+.-.+. .|+...|++.|+.-.+-..++.|+.+++.. ..|++.+|--...--.++|....|..+|....+. -.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 88877764 788888888888888888888888888875 3677778877777777788888888888776543 12
Q ss_pred CHHHHHHHHHHH----hccCChhHHHHHHHHHHHhCCCC-chHHHhHHhcchhhcCCHHHHHHHH--------hcCCCC-
Q 005476 322 NEVTMVSVLSCC----AVLGALETGKWVHLYVKKKRMEL-TITLGTALMDFYAKCGLIENAVEVF--------KKMPLK- 387 (695)
Q Consensus 322 d~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~--------~~~~~~- 387 (695)
|...--.+..++ .....++.|..+++.++..-... ...+|..+...--+-|+.....+.. +.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 222222333333 44567788888888887753222 2344554444444445543333222 222222
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hccccHHHHHHHHHHchhhcC
Q 005476 388 --NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-------AFIAVLSAC---SHVGMVDEGRELFVSMSRDFD 455 (695)
Q Consensus 388 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~ 455 (695)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+=-+| ....+++.+.++|+..++
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--- 394 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--- 394 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---
Confidence 5567777777777788999999999998874 566321 222222222 345788888899988864
Q ss_pred CCC-ChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccH
Q 005476 456 LEP-RMEHYGCMVDIL----GRAGLVEEAYQFIKNM-PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDY 529 (695)
Q Consensus 456 ~~p-~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (695)
+.| ...++.-+--+| .|+.++..|.+++-.. |.-|...++...|..-.+.++++....++++.++-.|.+..++
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 444 445555444444 4788889998888764 7788888888888888888999999999999999999988888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCce
Q 005476 530 ILLSDIYASAGRCEDALRVMNQMREQGIKKTPGC 563 (695)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 563 (695)
...+..-...|+++.|..+|.....+.....|..
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 8888888889999999999998887654333433
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=2.4e-10 Score=120.63 Aligned_cols=282 Identities=11% Similarity=0.044 Sum_probs=184.9
Q ss_pred HhcCChhHHHHHHhccCC--CCe-ehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhccCChhHH
Q 005476 167 ANCGRIDIARKMFDRMSN--RDV-FSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEV--TLINVLMACGRLADIELG 241 (695)
Q Consensus 167 ~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a 241 (695)
...|+++.|++.+.+..+ |+. ..+-.....+.+.|+++.|.+.+.+..+.. |+.. .-..........|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 357999999999988765 332 223344566778899999999999987653 4443 333346777889999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHH----HHHHHhcCCHHHHHHHHHHh
Q 005476 242 GWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK---DVVAWSAM----ISGYSQARRCKEALGVFHDM 314 (695)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~l----i~~~~~~g~~~~A~~~~~~m 314 (695)
...++.+.+.. +.+..+...+...|...|++++|.+.+..+.+. +...+..+ ..+....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 557788999999999999999999999988754 22222111 11112222222222333333
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC--CChhH-
Q 005476 315 QMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL--KNVFF- 391 (695)
Q Consensus 315 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~- 391 (695)
.... |+ ..+.++..+..++..+...|+.++|.+++++..+ ||...
T Consensus 252 ~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 3221 10 0012344444455555555555555555555443 22211
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHH
Q 005476 392 --WTVLIQCLASNGQGERALETYYIMREKNIEPNDV---AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCM 466 (695)
Q Consensus 392 --~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 466 (695)
+..........++.+.+++.+++..+ ..|+.. ...++...|.+.|++++|.+.|+.... +...|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 11111222334667788888888777 456554 445778888999999999999995322 3567888888899
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 005476 467 VDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~m 486 (695)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998873
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=1.1e-09 Score=114.88 Aligned_cols=275 Identities=11% Similarity=0.062 Sum_probs=187.1
Q ss_pred cCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHH--HHHHHHhccCChhHHHH
Q 005476 270 CGHVDKARRLFEQMNIK--D-VVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMV--SVLSCCAVLGALETGKW 344 (695)
Q Consensus 270 ~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~ 344 (695)
.|+++.|++........ + ...+-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666654432 1 222222233335667777777777776653 44443222 22345566677777777
Q ss_pred HHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCCh-----------hHHHHHHHHHHhcCChHHHHHHHH
Q 005476 345 VHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNV-----------FFWTVLIQCLASNGQGERALETYY 413 (695)
Q Consensus 345 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 413 (695)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777766655 44566666777777777777777777776654211 133334444444555666677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 005476 414 IMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-N 491 (695)
Q Consensus 414 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 491 (695)
.+... .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....|+.+++.+.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 344666888899999999999999999988865 34555322 233334559999999999876 4455 4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 492 PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 492 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
...+..+...|...+++++|.+.|+++++.+|++ ..|..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567788889999999999999999999999975 5688999999999999999999998754
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=6.2e-12 Score=125.93 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=96.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcC
Q 005476 92 MIRAFTLKQSPQEAVMLYKTMLQNSVEPDR-FTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCG 170 (695)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 170 (695)
+...+.+.|++++|++++.........|+. ..|..+...+...++.+.|.+.++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 355566777888888877554443223333 333344445556677888888888887765 3356666777776 5778
Q ss_pred ChhHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCChhHHHHHHHH
Q 005476 171 RIDIARKMFDRMSN--RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLG-VKFDEVTLINVLMACGRLADIELGGWISEY 247 (695)
Q Consensus 171 ~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 247 (695)
++++|.+++...-+ ++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.+.|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877766533 456667777788888888888888888876432 334555667777777788888888888888
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHH
Q 005476 248 MEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMN---IKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEV 324 (695)
Q Consensus 248 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 324 (695)
+++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 88774 3357778888888888888888776666553 3466778888888888888888888888877642 33566
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHH
Q 005476 325 TMVSVLSCCAVLGALETGKWVHLYVK 350 (695)
Q Consensus 325 t~~~ll~a~~~~~~~~~a~~i~~~~~ 350 (695)
+...+..++...|+.+.|..+..++.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 66677777777777777776665543
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.8e-08 Score=99.59 Aligned_cols=155 Identities=13% Similarity=0.065 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHh
Q 005476 325 TMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLAS 401 (695)
Q Consensus 325 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 401 (695)
|...+.+.++-.++.+.|...|+++.+.+ +....+|+.+.+-|....+...|.+-++...+ +|-..|-.+.++|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 33334444444444444444444444443 22333444444445555555555555444332 344455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 005476 402 NGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAY 480 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (695)
.+.+.=|+-.|++..+ ++|+ ...|.+|..+|.+.++.++|++.|..... .-..+...+..|.++|-+.++.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHH
Confidence 5555555555555554 4443 23455555555555555555555554443 11223344555555555555555554
Q ss_pred HHHH
Q 005476 481 QFIK 484 (695)
Q Consensus 481 ~~~~ 484 (695)
..++
T Consensus 487 ~~ye 490 (559)
T KOG1155|consen 487 QYYE 490 (559)
T ss_pred HHHH
Confidence 4444
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.9e-09 Score=106.19 Aligned_cols=259 Identities=12% Similarity=0.094 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcch
Q 005476 289 VAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFY 368 (695)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 368 (695)
...-.-..-+-..+++.+..++++...+.. ++....+..=|..+...|+...-..+-..+++. .+....+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 333444455677889999999999988753 445555555555667777766655555555554 366677888888888
Q ss_pred hhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHH
Q 005476 369 AKCGLIENAVEVFKKMPLKN---VFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGR 444 (695)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 444 (695)
.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+ +-|. ...+.-+..-|.+.++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHH
Confidence 88999999999998876533 35799999999999999999999988766 3332 224444555788899999999
Q ss_pred HHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHhhHHHHHHHHHhcCChhHHHHH
Q 005476 445 ELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM--------PIPP-NPVIWRTLLAACRAHKNVKVGEES 514 (695)
Q Consensus 445 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 514 (695)
++|.+.. ++-| |+.+++-+.-+....+.+.+|..+|+.. +-++ -..+|+.|..+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999885 6666 5777788887888889999999999865 1112 345688899999999999999999
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 515 LKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 515 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
+++.+.+.|.++.+|.+++-+|...|+.+.|...|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.1e-09 Score=103.17 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=165.2
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC---CccHHHHHHHHHHhcCChhHH
Q 005476 99 KQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGC---RQLVTNTLIHLYANCGRIDIA 175 (695)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A 175 (695)
++++++|.++|-+|.+... -+..+-.+|-+.+.+.|..+.|..+|+.+.++.--+ .....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4689999999999998422 134456677788899999999999999998753111 123456677888899999999
Q ss_pred HHHHhccCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhH----HHHHHHHHhccCChhHHHHHHHHH
Q 005476 176 RKMFDRMSNRDV---FSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVT----LINVLMACGRLADIELGGWISEYM 248 (695)
Q Consensus 176 ~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~ 248 (695)
+.+|..+.+... .+...|+..|-+..+|++|+++-+++.+.|-++..+- |..+........+++.|...+...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999877433 3556689999999999999999999998776665543 445555566667788888888887
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHCC
Q 005476 249 EEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDV----VAWSAMISGYSQARRCKEALGVFHDMQMAN 318 (695)
Q Consensus 249 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (695)
.+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|.+.|+.++.+..+.++.+..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7764 34555666677788888888888888888876654 356677788888888888888888877654
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=3.2e-09 Score=100.17 Aligned_cols=267 Identities=13% Similarity=0.111 Sum_probs=157.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhC-CCC--chHHHHHHHHHHHhcCCHHHH
Q 005476 200 TECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKE-LNG--NVKLMTAVVDMYAKCGHVDKA 276 (695)
Q Consensus 200 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A 276 (695)
+.+.++|+++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|+.+.++- +.. -..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887631 1122234567777788888888998888888763 111 234566778889999999999
Q ss_pred HHHHHhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHH----HHHHHHHHhccCChhHHHHHHHHH
Q 005476 277 RRLFEQMNIKDV---VAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVT----MVSVLSCCAVLGALETGKWVHLYV 349 (695)
Q Consensus 277 ~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~~ 349 (695)
+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++...+-.+..+- |.-+........+.+.|..++..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999877443 4666789999999999999999999988765544332 222222223334444444444444
Q ss_pred HHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005476 350 KKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIA 429 (695)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 429 (695)
.+.+. . .+..--.+...+...|++..|++.++...+++..--..+...
T Consensus 207 lqa~~-~-------------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQADK-K-------------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhCc-c-------------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 43321 1 111222233445556666666666666655332222234555
Q ss_pred HHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHhhHHHHHHHH
Q 005476 430 VLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFI-KNMPIPPNPVIWRTLLAAC 502 (695)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~a~ 502 (695)
|..+|.+.|+.+++...+..+.+. .+....-..+.+.-....-.++|...+ +.+.-+|+...+.-|+...
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 556666666666666666555432 233333344444444444444444333 3345566666666666553
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=9.6e-10 Score=116.37 Aligned_cols=435 Identities=12% Similarity=0.052 Sum_probs=223.6
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCC
Q 005476 107 MLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRD 186 (695)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 186 (695)
.++-.+...|+.||.+||..++..|+..|+.+.|- +|..|.-..++.+..+++.++....+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45566777788888888888888888888887777 7887777777777778888888877777776664 567
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHH-HH-------HcCCCCCHhHHHHHHHHHhccC-ChhH------HHHHHHHHHHh
Q 005476 187 VFSWNSMFSGYVKTECWREIVDLFNE-MR-------DLGVKFDEVTLINVLMACGRLA-DIEL------GGWISEYMEEK 251 (695)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~pd~~t~~~ll~a~~~~~-~~~~------a~~~~~~~~~~ 251 (695)
..+|+.|..+|.+.||... ++..++ |. ..|+......+...+.+|-..- +... -+.++...++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 21 1222222222222222221110 0000 01112222222
Q ss_pred CCCCchHHHHH----HHHHH-HhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHH
Q 005476 252 ELNGNVKLMTA----VVDMY-AKCGHVDKARRLFEQMNI-KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVT 325 (695)
Q Consensus 252 g~~~~~~~~~~----li~~~-~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 325 (695)
+....+..++. .+.-. .....+++-........+ ++..++.+.+.+-..+|+.+.|..++.+|.+.|++.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 20000000000 01100 011122222222222222 4566666666666666666666666666666666666655
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHH------------------------HHHHH
Q 005476 326 MVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIEN------------------------AVEVF 381 (695)
Q Consensus 326 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~------------------------A~~~~ 381 (695)
|-.++-+ .++......+..-|...|+.|+..|+.-.+-...+.|.... |.+.+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 5555533 55555566666666666666666655544333333222111 11111
Q ss_pred h---------cCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH-HHHHHHHHHhcccc---
Q 005476 382 K---------KMPL-------KNVFFWTVLIQCLASNGQGERALETYYIMREK--NIEPNDV-AFIAVLSACSHVGM--- 439 (695)
Q Consensus 382 ~---------~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~-t~~~ll~a~~~~g~--- 439 (695)
+ ..++ ....+|...+. ...+|..++..++-..|..- ...|+.+ .|..++.-|.+.-.
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 1 1111 11233443332 23367777777777777542 1334433 55555544433211
Q ss_pred -------------------HHHHHHHHHHchhhc---------------CCCC-------ChhHHHHHHHHHhhcCCHHH
Q 005476 440 -------------------VDEGRELFVSMSRDF---------------DLEP-------RMEHYGCMVDILGRAGLVEE 478 (695)
Q Consensus 440 -------------------~~~a~~~~~~~~~~~---------------~~~p-------~~~~~~~li~~~~~~g~~~~ 478 (695)
..+..+......+.. ...| -...-+.++..+.+.-+..+
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111110000 0000 01112333444444444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 479 AYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEP---MHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 479 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
++...++..-.-=...|..|+.-+..+...+.|....++....+. -+..-+..+.+.+.+.+...++..+.+++++
T Consensus 478 ~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 478 ILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 443333321000124677888888888888988888888766441 2344678999999999999999999999987
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=5.3e-10 Score=108.64 Aligned_cols=198 Identities=16% Similarity=0.072 Sum_probs=162.3
Q ss_pred CchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005476 356 LTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLS 432 (695)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (695)
.....+..+...|.+.|++++|.+.|++... .+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3355667778888899999999999987643 356678888889999999999999999998843 234457777888
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhH
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKV 510 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 510 (695)
.+...|++++|.+.++.+............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998763222234567778889999999999999999886 3334 46678888889999999999
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 511 GEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
|...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888899999999999999999888765
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=1.6e-08 Score=98.61 Aligned_cols=279 Identities=11% Similarity=0.062 Sum_probs=190.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 005476 200 TECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRL 279 (695)
Q Consensus 200 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (695)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-..+.++-+.--.++..+.-+........|+++.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888866665433 3346666777778888888888888887764466777788888888888998888887
Q ss_pred HHhc---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHH-------HHHHHHHHHhccCChhHHHHHHHHH
Q 005476 280 FEQM---NIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEV-------TMVSVLSCCAVLGALETGKWVHLYV 349 (695)
Q Consensus 280 f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~~~~~~~~~a~~i~~~~ 349 (695)
.+++ ..++.........+|.+.|++.+...++.+|.+.|+--|+. ++..+++-+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~-------------- 241 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD-------------- 241 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc--------------
Confidence 7764 45678888889999999999999999999999888654432 23333322222
Q ss_pred HHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005476 350 KKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVA 426 (695)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (695)
.+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+..+
T Consensus 242 ---------------------~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~ 300 (400)
T COG3071 242 ---------------------DNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR 300 (400)
T ss_pred ---------------------cccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence 2222233334455443 3455556667777788888888888888888777776222
Q ss_pred HHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc
Q 005476 427 FIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWRTLLAACRAH 505 (695)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~ 505 (695)
+-.+.+.++...-.+..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.
T Consensus 301 ----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 301 ----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL 374 (400)
T ss_pred ----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 2345566666666666666555444444 55666777777777777777777654 5566777777777777777
Q ss_pred CChhHHHHHHHHHHh
Q 005476 506 KNVKVGEESLKNLVT 520 (695)
Q Consensus 506 g~~~~a~~~~~~~~~ 520 (695)
|+.+.|.+..++.+.
T Consensus 375 g~~~~A~~~r~e~L~ 389 (400)
T COG3071 375 GEPEEAEQVRREALL 389 (400)
T ss_pred CChHHHHHHHHHHHH
Confidence 777777777766664
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.3e-11 Score=85.44 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005476 387 KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSH 436 (695)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (695)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2e-11 Score=85.76 Aligned_cols=50 Identities=32% Similarity=0.537 Sum_probs=47.8
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005476 185 RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGR 234 (695)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 234 (695)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.6e-07 Score=89.27 Aligned_cols=301 Identities=10% Similarity=-0.017 Sum_probs=210.9
Q ss_pred CCHhHHHHHHHHHhc--cCChhHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH---
Q 005476 220 FDEVTLINVLMACGR--LADIELGGWISEYMEEKE-LNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSA--- 293 (695)
Q Consensus 220 pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--- 293 (695)
|+..+...-+.+++. .++-..+.+.+..+.+.. ++-|+....++.+.|...|+.++|+..|++...-|..+...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333343334444433 344444555555555443 66789999999999999999999999999976554433332
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCC
Q 005476 294 MISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGL 373 (695)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 373 (695)
..-.+.+.|+++....+...+.... .-....|..-+...-...+++.|..+-+..++.+ +.+...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 2334567899998888887776532 1122222222333345667777777777666654 2233333333455667899
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccccHHHHHHHHH
Q 005476 374 IENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVL-SACS-HVGMVDEGRELFV 448 (695)
Q Consensus 374 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~ 448 (695)
+++|.-.|+.... -+..+|..++.+|...|++.+|.-+-+..... +.-+..+...+. ..|. ....-++|.++++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987543 37899999999999999999999887765542 333444554442 2332 2334578999988
Q ss_pred HchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 005476 449 SMSRDFDLEPR-MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 449 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
+.. .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++..+.+++|...|..++.++|++.
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 775 56776 556778889999999999999999886 5678999999999999999999999999999999999874
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.6e-07 Score=95.97 Aligned_cols=434 Identities=15% Similarity=0.160 Sum_probs=245.7
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHH--HHHHHH--hc
Q 005476 94 RAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNT--LIHLYA--NC 169 (695)
Q Consensus 94 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~~ 169 (695)
.-+..+|++++|.....+++..+ +-|...+..-+-++.+.+.++.|..+... .+. ..+++. +=.+|+ +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 34556677777777777777643 22445566666666777777777643332 111 011111 233444 66
Q ss_pred CChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHH
Q 005476 170 GRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEV-TLINVLMACGRLADIELGGWISEYM 248 (695)
Q Consensus 170 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~ 248 (695)
+..|+|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-... .. ..+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHH
Confidence 788888888775444444344444566777888888888888887665332111 112222221110 00 011
Q ss_pred HHhCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCC-----hh-----HHHHHHHHHHhcCCHHHHH
Q 005476 249 EEKELNG--NVKLMTAVVDMYAKCGHVDKARRLFEQM--------NIKD-----VV-----AWSAMISGYSQARRCKEAL 308 (695)
Q Consensus 249 ~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~ 308 (695)
......| +-..+-.....+...|++.+|+++++.. .+.| .. .---|.-.+...|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111222 1112222344566778888888888766 1111 11 1122444567789999999
Q ss_pred HHHHHhHHCCCCCCHHHHHHH---HHHHhccCChhHH--HHHHHHH-----------HHhCCCCchHHHhHHhcchhhcC
Q 005476 309 GVFHDMQMANVVPNEVTMVSV---LSCCAVLGALETG--KWVHLYV-----------KKKRMELTITLGTALMDFYAKCG 372 (695)
Q Consensus 309 ~~~~~m~~~g~~pd~~t~~~l---l~a~~~~~~~~~a--~~i~~~~-----------~~~~~~~~~~~~~~li~~y~~~g 372 (695)
.++...+... .+|......+ |.+...-.++-.+ ...++.. ...........-+.++.+|. +
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 9999988775 4555332222 2222222222221 1111110 00111112222345555554 5
Q ss_pred CHHHHHHHHhcCCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHH
Q 005476 373 LIENAVEVFKKMPLKN-VFFWTVLIQCLA--SNGQGERALETYYIMREKNIEPND--VAFIAVLSACSHVGMVDEGRELF 447 (695)
Q Consensus 373 ~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 447 (695)
..+.+.++-...+... ...+.+++.... +...+.+|.+++...-+. .|.. +.....+......|+++.|.+++
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5677777777776533 344455544332 233577888888777663 4544 34445556677889999999999
Q ss_pred H--------HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HhhHHHHHHHHHhcCChhH
Q 005476 448 V--------SMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM--------PIPPN-PVIWRTLLAACRAHKNVKV 510 (695)
Q Consensus 448 ~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~a~~~~g~~~~ 510 (695)
. .+.. .+.. +.+..+++.+|.+.++-+.|..++.+. ...+. ..+|.-+..--.++|+-++
T Consensus 400 ~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 4432 2333 445567888999888866666666543 22222 2344445555567899999
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 511 GEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
|...++++++.+|++....+.++.+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999999999999875 35666655443
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=8.4e-07 Score=91.44 Aligned_cols=491 Identities=13% Similarity=0.127 Sum_probs=286.0
Q ss_pred chhHHHHHHHHHccCCCCCHHHHHHHhccCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHH
Q 005476 52 PTISENLLEAAAILIPATTMDYALSIFHKINE-----PDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFAC 126 (695)
Q Consensus 52 ~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 126 (695)
+.+|-..+....+. |++..-+..|++... .....|...+.-....+-++-++.+|+..++ +.|.. -.-
T Consensus 102 pRIwl~Ylq~l~~Q---~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~ee 174 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQ---GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REE 174 (835)
T ss_pred CHHHHHHHHHHHhc---chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHH
Confidence 45566666666667 888888888876532 2344688888888888999999999998877 33432 455
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhC------CCCCccHHHHHHHHHHhcCC---hhHHHHHHhccCC--CC--eehHHHH
Q 005476 127 TLKACSRIRALEEGEQIHAQILKSG------FGCRQLVTNTLIHLYANCGR---IDIARKMFDRMSN--RD--VFSWNSM 193 (695)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~m~~--~~--~~~~~~l 193 (695)
-+..++..+++++|.+.++.++... -+.+...|+-+.+..++.-+ --....+++.+.. +| ...|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 6667778888888888888776432 14556677777777665533 2234455555544 23 3478999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC----------------------ChhHHHHHHHHHHHh
Q 005476 194 FSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLA----------------------DIELGGWISEYMEEK 251 (695)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~----------------------~~~~a~~~~~~~~~~ 251 (695)
...|.+.|.++.|.++|++-...-.. ..-|+.+..+|+.-. +++....-++.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999887664222 222444444443211 111222223332222
Q ss_pred C-----------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhHHHHHHHHHHhcCCHHHHHHHH
Q 005476 252 E-----------LNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---K------DVVAWSAMISGYSQARRCKEALGVF 311 (695)
Q Consensus 252 g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~------~~~~~~~li~~~~~~g~~~~A~~~~ 311 (695)
. -+.++..|..-+.. ..|+..+-...|.+... | -...|..+..-|-.+|+.+.|..+|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 01122222222221 12344444444444321 1 1235777777777777777777777
Q ss_pred HHhHHCCCCCC---HHHHHHHHHHHhccCChhHHHHHHHHHHHh-----------CCCC------chHHHhHHhcchhhc
Q 005476 312 HDMQMANVVPN---EVTMVSVLSCCAVLGALETGKWVHLYVKKK-----------RMEL------TITLGTALMDFYAKC 371 (695)
Q Consensus 312 ~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------~~~~------~~~~~~~li~~y~~~ 371 (695)
++..+...+-- ..+|..-...=.+..+++.|..+.+.+... +.++ +..+|...++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 77665432211 112222222223344555666555544321 1111 223444555555566
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cccHHHHH
Q 005476 372 GLIENAVEVFKKMPLKNVFFWTVLI---QCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSH---VGMVDEGR 444 (695)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~ 444 (695)
|-++....+++++.+--+.+=..++ ..+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.+ ...++.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 7777777777777542222211111 22334556777877777655443345544 55555544433 34688999
Q ss_pred HHHHHchhhcCCCCChh--HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 005476 445 ELFVSMSRDFDLEPRME--HYGCMVDILGRAGLVEEAYQFIKNM--PIPPN--PVIWRTLLAACRAHKNVKVGEESLKNL 518 (695)
Q Consensus 445 ~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~ 518 (695)
.+|++.++ +.+|... .|-.....=-+-|....|++++++. .+++. ...||..|.--...=-+.....+++++
T Consensus 571 dLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 99999886 6666432 2333333334568888899999887 33332 346777776544444456677889999
Q ss_pred HhcCCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 519 VTLEPMHSG--DYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 519 ~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
++.-|++.. .....+++=.+.|..+.|..++..-.+.
T Consensus 649 Ie~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 649 IESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 988775533 3345677778899999999998776553
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8.6e-08 Score=97.38 Aligned_cols=278 Identities=11% Similarity=0.021 Sum_probs=209.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHH
Q 005476 252 ELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKD---VVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVS 328 (695)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 328 (695)
+...+..+.....+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.+|.+. .+-...+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 345567777778888889999999999999987654 445666677888999988888888888875 2445678888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCh
Q 005476 329 VLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQG 405 (695)
Q Consensus 329 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 405 (695)
+.--|...|..++|++.+......+ +.-...|-.+...|+-.|..|+|...+....+ + ...-+--+..-|.+.+..
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 8888888899999999998876644 22245677788889989999998877765432 1 111111233457788899
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhc---C--CCCChhHHHHHHHHHhhcCCHHHH
Q 005476 406 ERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDF---D--LEPRMEHYGCMVDILGRAGLVEEA 479 (695)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~--~~p~~~~~~~li~~~~~~g~~~~A 479 (695)
+.|.+.|.+... +.|+.. ..+-+.-...+.+.+.+|..+|+.....- + ......+++.|..+|.+++++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999887 777654 55555555556788999999998776210 0 111455688999999999999999
Q ss_pred HHHHHhC-CC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHH
Q 005476 480 YQFIKNM-PI-PPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLS 533 (695)
Q Consensus 480 ~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (695)
+..+++. .. +.|..++.++.-.+...|+++.|...|.+++.+.|++..+-..|.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999986 33 347888999999999999999999999999999999865444443
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=5.3e-09 Score=109.31 Aligned_cols=231 Identities=16% Similarity=0.163 Sum_probs=167.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHh-----CC-CCch-HHHhHHhcchhhcCCHHHHHHHHhcCCC-------C-C
Q 005476 324 VTMVSVLSCCAVLGALETGKWVHLYVKKK-----RM-ELTI-TLGTALMDFYAKCGLIENAVEVFKKMPL-------K-N 388 (695)
Q Consensus 324 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-~ 388 (695)
.|...+...|...|+++.|..+++..++. |. .+.+ ...+.+..+|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555677777778888887777776654 21 1222 2334466778888888888888877642 1 2
Q ss_pred ---hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHchhhcC--C
Q 005476 389 ---VFFWTVLIQCLASNGQGERALETYYIMRE-----KNIEPNDV--AFIAVLSACSHVGMVDEGRELFVSMSRDFD--L 456 (695)
Q Consensus 389 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 456 (695)
..+++.|...|...|++++|...+++..+ .|..+..+ .++.+...|...+.+++|..++....+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 24577777788999998888887776543 23333333 566777789999999999999987766444 2
Q ss_pred CCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHh--
Q 005476 457 EPR----MEHYGCMVDILGRAGLVEEAYQFIKNM---------PIPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVT-- 520 (695)
Q Consensus 457 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-- 520 (695)
.++ ..+++.|...|...|++++|.+++++. ...+. ...++.|..+|.+.+++++|.++|.+.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467999999999999999999999876 11222 44567788899999999999999988875
Q ss_pred --cCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 521 --LEPMH---SGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 521 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.+|+. ..+|..|+.+|.+.|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34554 44688999999999999999999988763
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=3.8e-06 Score=86.75 Aligned_cols=484 Identities=12% Similarity=0.106 Sum_probs=290.0
Q ss_pred cCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC------CCCC
Q 005476 47 RFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNS------VEPD 120 (695)
Q Consensus 47 g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~ 120 (695)
.+.....+|.-.+...... |-++-+.+++++-..-++..-+--|..+...+++++|-+.+...+... -+.+
T Consensus 133 pvtqH~rIW~lyl~Fv~~~---~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn 209 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFVESH---GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSN 209 (835)
T ss_pred chHhhccchHHHHHHHHhC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccch
Confidence 3344556777777777777 888999999998776666678888999999999999999998876432 1234
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCC--ccHHHHHHHHHHhcCChhHHHHHHhccCC--CCeehHHHHH
Q 005476 121 RFTFACTLKACSRIRALEEGEQIHAQILKSGF--GCR--QLVTNTLIHLYANCGRIDIARKMFDRMSN--RDVFSWNSMF 194 (695)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li 194 (695)
...|.-+-...++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.|.++.|+.+|++... -.+.-++.+.
T Consensus 210 ~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~if 288 (835)
T KOG2047|consen 210 HQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIF 288 (835)
T ss_pred hhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHH
Confidence 45566666666655544333322 22333332 234 36889999999999999999999997654 2333344444
Q ss_pred HHHHhC----------------CC------hhHHHHHHHHHHHcCC----------CC-CHhHHHHHHHHHhccCChhHH
Q 005476 195 SGYVKT----------------EC------WREIVDLFNEMRDLGV----------KF-DEVTLINVLMACGRLADIELG 241 (695)
Q Consensus 195 ~~~~~~----------------g~------~~~A~~~~~~m~~~g~----------~p-d~~t~~~ll~a~~~~~~~~~a 241 (695)
++|++- |+ ++-.+.-|+.+...+. .| +..+|..-.. ...|+..+-
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~ 366 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH
Confidence 444331 11 2222333444333210 01 1112222211 223455566
Q ss_pred HHHHHHHHHhCCCC------chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHhcCCHHHHH
Q 005476 242 GWISEYMEEKELNG------NVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDV-------VAWSAMISGYSQARRCKEAL 308 (695)
Q Consensus 242 ~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-------~~~~~li~~~~~~g~~~~A~ 308 (695)
...+.++++.- .| -...|..+...|-..|+++.|+.+|++...-+- .+|-.-...=.+..+++.|+
T Consensus 367 i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 367 INTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66777776642 22 235688999999999999999999999765322 35555555566778889999
Q ss_pred HHHHHhHHCCCC-----------CCH------HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhc
Q 005476 309 GVFHDMQMANVV-----------PNE------VTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKC 371 (695)
Q Consensus 309 ~~~~~m~~~g~~-----------pd~------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 371 (695)
++.++.....-. +.. ..|+..+..-...|-++..+.+++.++...+.....+.| ....+-..
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh 524 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEH 524 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhh
Confidence 988776532111 111 223334444456688899999999999877554333333 22234455
Q ss_pred CCHHHHHHHHhcCCC----CCh-hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccccHH
Q 005476 372 GLIENAVEVFKKMPL----KNV-FFWTVLIQCLAS---NGQGERALETYYIMREKNIEPNDVAFIAVLSA--CSHVGMVD 441 (695)
Q Consensus 372 g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~ 441 (695)
.-++++.+++++-.. |++ ..||+.+.-+.+ ....+.|..+|++..+ |.+|...-+.-|+-+ =.+-|...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 668999999987643 454 468888776654 2368899999999999 788877644444333 23458888
Q ss_pred HHHHHHHHchhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHH---HHHHHHHhcCChhHHHHHH
Q 005476 442 EGRELFVSMSRDFDLEPR--MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWR---TLLAACRAHKNVKVGEESL 515 (695)
Q Consensus 442 ~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~---~ll~a~~~~g~~~~a~~~~ 515 (695)
.|+.+++++.. ++++. ...|+..|.--...=-+..-..++++. ..-||...-. -+...-.+.|..+.|..++
T Consensus 604 ~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 604 HAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 99999988754 45543 345655553222111111112222221 1112222211 1122235566777777777
Q ss_pred HHHHhcC-CC-CcccHHHHHHHHHHcCC
Q 005476 516 KNLVTLE-PM-HSGDYILLSDIYASAGR 541 (695)
Q Consensus 516 ~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 541 (695)
...-++- |. +...|...-..=.+.|+
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 6666643 32 22334455555556666
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.13 E-value=4e-08 Score=95.91 Aligned_cols=251 Identities=10% Similarity=0.017 Sum_probs=167.9
Q ss_pred cCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHH
Q 005476 301 ARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEV 380 (695)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 380 (695)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+..+..++.+..-+++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766555332 2344455556667777777777777777765566666666667777777777777766
Q ss_pred HhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccccHHHHHHHHHHc
Q 005476 381 FKKMP---LKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPND-------VAFIAVLSACSHVGMVDEGRELFVSM 450 (695)
Q Consensus 381 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~ 450 (695)
.++.. ..+.........+|.+.|++.+...+..+|.+.|+--|. .++..++.-+...+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 65443 356677777778888888888888888888877755443 36777777777766666666777776
Q ss_pred hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccH
Q 005476 451 SRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDY 529 (695)
Q Consensus 451 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (695)
.+ ..+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. -..+-.+.+-++.+.-++..++.++..|+++..+
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 54 44555666667777788888888887777664 2112222 1223345566777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 530 ILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
..|+..|.+.+.|.+|...|+...+.+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 777777777777777777777665543
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=9.8e-09 Score=112.64 Aligned_cols=244 Identities=15% Similarity=0.054 Sum_probs=174.6
Q ss_pred CHHHHHHHHHHhHHCCCCCCHH-HHHHHHHHHh---------ccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcC
Q 005476 303 RCKEALGVFHDMQMANVVPNEV-TMVSVLSCCA---------VLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCG 372 (695)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (695)
..++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888888765 45433 4433333322 2234678888888888765 445677777888888999
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHH
Q 005476 373 LIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFV 448 (695)
Q Consensus 373 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 448 (695)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999988754 3 456788888999999999999999999998 667643 33344445666899999999999
Q ss_pred HchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 449 SMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNP-VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 449 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
++.+. ..| +...+..+...|...|+.++|...++++ +..|+. ..++.+...+...| +.|...++.+++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88652 234 4556778888999999999999999887 344543 34555555667777 47888888877743222
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 526 SGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
+..+..+...|.-.|+-+.+..+ +++.+.|
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22233377778888888888877 7777654
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=8.1e-07 Score=93.72 Aligned_cols=399 Identities=14% Similarity=0.120 Sum_probs=255.3
Q ss_pred hCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhH-H
Q 005476 150 SGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVT-L 225 (695)
Q Consensus 150 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~ 225 (695)
..+..|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999998654 3455799999999999999999999988765544465444 4
Q ss_pred HHHHHHHh-ccCChhHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhc-----------CCHHHHHHHHHhcCCC---
Q 005476 226 INVLMACG-RLADIELGGWISEYMEEK--EL--NGNVKLMTAVVDMYAKC-----------GHVDKARRLFEQMNIK--- 286 (695)
Q Consensus 226 ~~ll~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~f~~m~~~--- 286 (695)
...-+.|. +.+..+++..+-..+++. +. ......+..+.-+|... ....++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444 456777777766666652 11 11233444444444322 1234455666665322
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-CCCCchHHHhHHh
Q 005476 287 DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKK-RMELTITLGTALM 365 (695)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li 365 (695)
|..+---+.--|+..++.+.|++..++....+-.-+...+..+.-.+...+++..|..+.+..... |... .....-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~--~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH--VLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--hhchhhh
Confidence 332222233346677888999999888888765667777777777778888888888887766552 2110 0000111
Q ss_pred cchhhcCCHHHHHHHHhcCC------------------------------C-CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 005476 366 DFYAKCGLIENAVEVFKKMP------------------------------L-KNVFFWTVLIQCLASNGQGERALETYYI 414 (695)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~------------------------------~-~~~~~~~~li~~~~~~g~~~~A~~l~~~ 414 (695)
..-.+.++.++|......+. + .|...-..-+.+... -+...+..-. .
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~-~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSEL-K 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhccccc-c
Confidence 11122344444433222111 0 011111111111111 0110000000 0
Q ss_pred HHHCCCCCCH--------HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 005476 415 MREKNIEPND--------VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKN 485 (695)
Q Consensus 415 m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (695)
|...-+.|+. ..|......+.+.+..++|...+.+.. ++.| ....|.-....+...|.+++|.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1211222322 133445556778888888887777764 3344 566777788889999999999988876
Q ss_pred C-CCCCC-HhhHHHHHHHHHhcCChhHHHH--HHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 486 M-PIPPN-PVIWRTLLAACRAHKNVKVGEE--SLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 486 m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
. .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.+...|..|+.++.+.|+.++|.+.|+...+-
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5 66775 6688899999999999999988 999999999999999999999999999999999999988763
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=1e-07 Score=99.77 Aligned_cols=236 Identities=17% Similarity=0.161 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Chh-HHHHHHHHHHhcCCHHHHHHHHHHhHHC-----C-C
Q 005476 257 VKLMTAVVDMYAKCGHVDKARRLFEQMNIK----------DVV-AWSAMISGYSQARRCKEALGVFHDMQMA-----N-V 319 (695)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 319 (695)
..+...|..+|...|+++.|..+|....+. .+. ..+.+...|...+++.+|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555777777777777777777654321 111 2334666788888899998888888542 1 1
Q ss_pred CCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCC---CCChh-HHHH
Q 005476 320 VPN-EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP---LKNVF-FWTV 394 (695)
Q Consensus 320 ~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~-~~~~ 394 (695)
.|. ..++..|-.+|.+.|++++|...++.+.+ +++... .+.+. ..+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHH
Confidence 121 22455555566666777666665544332 222211 12222 2455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccccHHHHHHHHHHchhhc---CC--CC-Chh
Q 005476 395 LIQCLASNGQGERALETYYIMREK---NIEPND----VAFIAVLSACSHVGMVDEGRELFVSMSRDF---DL--EP-RME 461 (695)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~--~p-~~~ 461 (695)
++..+...+++++|..++++..+. -+.++. -+++.+...+.+.|++++|.++|++++... +- .+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 666777788888888887765431 123333 278888899999999999999998876532 11 22 245
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005476 462 HYGCMVDILGRAGLVEEAYQFIKNM--------PIPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVT 520 (695)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 520 (695)
.++.|...|.+.+++.+|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6788888899999999888888774 33455 45899999999999999999999999875
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.4e-07 Score=94.01 Aligned_cols=336 Identities=10% Similarity=0.037 Sum_probs=162.4
Q ss_pred HHHHccCCCCCHHHHHHHhccCC--CCC-cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccC
Q 005476 60 EAAAILIPATTMDYALSIFHKIN--EPD-SSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRF-TFACTLKACSRIR 135 (695)
Q Consensus 60 ~~y~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~ 135 (695)
+-|-+. |.+++|++.++... .|| ++-|...-.+|...|++++..+.-...++ +.|+-. .+.--.++.-..|
T Consensus 123 N~~f~~---kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 123 NKFFRN---KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhc---ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 344556 99999999998875 366 77789999999999999999998888877 556532 3444445566677
Q ss_pred ChHHHHHHHHHH-HHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhC------------CC
Q 005476 136 ALEEGEQIHAQI-LKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKT------------EC 202 (695)
Q Consensus 136 ~~~~a~~~~~~~-~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~------------g~ 202 (695)
++.++..=..-+ +-.|+.... -..++.-..+.--...+.+-+.+=..|...+ .+.|..|... ++
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s--~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNAS--IEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccch--hHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccccccCCCc
Confidence 777665322211 112221111 1111111111111223333333211222211 2222222211 00
Q ss_pred -----hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC----chHHHHHHHHHHHhcCCH
Q 005476 203 -----WREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNG----NVKLMTAVVDMYAKCGHV 273 (695)
Q Consensus 203 -----~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~ 273 (695)
..++++.+..-...| |......+..... ..+...-...+.. -..+...-...+.-+|+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~-------Y~~a~~~~te~~~-----~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEG-------YLKAYDKATEECL-----GSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred cchhhHHHHHHHHHhhCchh-------HHHHHHHHHHHhh-----hhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 111111111111111 1111111100000 0000000000000 011122222334567888
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 005476 274 DKARRLFEQMNIK---DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVK 350 (695)
Q Consensus 274 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 350 (695)
-.|..-|+....- +...|--+...|.+..+.++.++.|.+....+ +-|+.+|..-.....-+++++.|..=|+..+
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888876532 33337777778888888888888888887654 2244455444444444455555555555555
Q ss_pred HhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005476 351 KKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQGERALETYYIMRE 417 (695)
Q Consensus 351 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (695)
+.. +.+...|--+.-+..|.++++++...|++..+ | -+..||-....+..++++++|.+.|+..++
T Consensus 422 ~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 422 SLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 433 22233333333344455555556665555543 1 334455555555566666666666665554
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.2e-08 Score=102.29 Aligned_cols=211 Identities=14% Similarity=0.080 Sum_probs=151.0
Q ss_pred ChhHHHHHHHHHHHhC-CCC--chHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 005476 338 ALETGKWVHLYVKKKR-MEL--TITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALET 411 (695)
Q Consensus 338 ~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 411 (695)
..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555422 222 235577777889999999999999987754 4678899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 005476 412 YYIMREKNIEPND-VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM--PI 488 (695)
Q Consensus 412 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 488 (695)
|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 77864 4778888888899999999999998874 3454332222233345678899999999664 22
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 489 PPNPVIWRTLLAACRAHKNVKVGEESLKNLV-------TLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 489 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
.|+ .|.. .......|+...+ +.++.+. ++.|....+|..++.+|.+.|++++|...|++..+.++
T Consensus 196 ~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred Ccc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 333 3331 2223345665544 3444444 44566677999999999999999999999999987553
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=4.8e-08 Score=94.77 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcc
Q 005476 288 VVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDF 367 (695)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 367 (695)
...+..+...|...|++++|++.+++..... +.+...+..+...+...|+++.|...+....+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 4567777777888888888888888776542 22344555555555666666666666655554331
Q ss_pred hhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 005476 368 YAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGREL 446 (695)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 446 (695)
.+...+..+...+...|++++|.+.|++.......|. ...+..+...+...|++++|.+.
T Consensus 97 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 97 -------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233444455555566666666666666655322222 22444455556666666666666
Q ss_pred HHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005476 447 FVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PI-PPNPVIWRTLLAACRAHKNVKVGEESLKNLVTL 521 (695)
Q Consensus 447 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 521 (695)
+....+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666532 1223455666666666777777776666654 11 223445555556666667777777766665544
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1e-05 Score=77.73 Aligned_cols=446 Identities=11% Similarity=0.047 Sum_probs=206.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCh
Q 005476 93 IRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRI 172 (695)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 172 (695)
+.-+..+.++..|+.+++--...+-+-...+-.-+..++...|++++|...+..+.... .++..++-.|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34445556666666666655433222111122223334456667777777666666543 45555555555555556666
Q ss_pred hHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 005476 173 DIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKE 252 (695)
Q Consensus 173 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 252 (695)
.+|..+-...++ +...-..|...--+.++-++-+.+-+.+.+.- -| -.++.+..-....+.+|..++..++..+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~--Ed---qLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL--ED---QLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH--HH---HHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666554432 11122223333334444444444433333210 01 1111111122223445555555544332
Q ss_pred CCCchHHHHH-HHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHH
Q 005476 253 LNGNVKLMTA-VVDMYAKCGHVDKARRLFEQMN---IKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVS 328 (695)
Q Consensus 253 ~~~~~~~~~~-li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 328 (695)
|+-...|. +.-.|.+..-++-+.++++--. ..++++-|.......+.=....|.+-.+.+...+-.. +.+..
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~ 257 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIE 257 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHH
Confidence 12111111 1223445555554444443321 1123333333333322222222222233332221100 00000
Q ss_pred -HHH-HHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC--
Q 005476 329 -VLS-CCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQ-- 404 (695)
Q Consensus 329 -ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-- 404 (695)
+++ -+.--..-+.|.+++--+.+. -| ..--.|+-.|.+.+++++|..+.+.+....+.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 000 001112234444444333322 11 1222356667888888888888877754433333222222333332
Q ss_pred -----hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 005476 405 -----GERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEE 478 (695)
Q Consensus 405 -----~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 478 (695)
..-|.+.|+-.-+++..-|.+ .--++.+++.-.-.+++...++..+. .|=...|...+ .+..+++..|++.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHH
Confidence 233444454443444443333 22334444555566777777777774 33444444444 46777888888888
Q ss_pred HHHHHHhCCC-C-CCHhhHHHHHHH-HHhcCChhHHHHHHHHHHhcC-CCCccc-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005476 479 AYQFIKNMPI-P-PNPVIWRTLLAA-CRAHKNVKVGEESLKNLVTLE-PMHSGD-YILLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 479 A~~~~~~m~~-~-p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~-p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
|+++|-.+.- + .|..+|.+++.- |.+.+.++.|..+ +++.+ |.+..+ .-.+++-|.+++.+=-|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8888876621 1 356667666554 4566677766554 34433 322222 2356677788888888888888776
Q ss_pred hCCCc
Q 005476 554 EQGIK 558 (695)
Q Consensus 554 ~~~~~ 558 (695)
..+..
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 65443
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=8.1e-07 Score=85.05 Aligned_cols=408 Identities=12% Similarity=0.030 Sum_probs=251.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChh
Q 005476 128 LKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWR 204 (695)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 204 (695)
+.-+...+++..|..+++.-...+-+....+---+..+|.+.|++++|...+..+.+ ++...|-.+.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344556678888888888776554333334445566788899999999999987654 45556777777777778888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 005476 205 EIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMN 284 (695)
Q Consensus 205 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 284 (695)
+|..+-.+.. -++-....++...-+.++-+.-..+++.+... ..-..+|..+....-.+++|++++.++.
T Consensus 109 eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887755532 23333445555566778888777777776543 2233455555555567999999999987
Q ss_pred CC--ChhHHHH-HHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCchH
Q 005476 285 IK--DVVAWSA-MISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCA--VLGALETGKWVHLYVKKKRMELTIT 359 (695)
Q Consensus 285 ~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~~~~~~~~ 359 (695)
.. +....|. |.-+|.+..-++-+.++++--.+. -||+. +..=+.+|. +.=.-..+.+-...+.+.+-..-+.
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 54 4455565 445678888888888888777664 45543 333333442 2222223333333333332211111
Q ss_pred HHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----H
Q 005476 360 LGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSA-----C 434 (695)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-----~ 434 (695)
.-..+-.-+.--.+-+.|++++-.+.+.=+..--.++--|.+.++..+|..+.+++.- ..|-....-.+..+ .
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhc
Confidence 1111111111122335677766554432223333455568899999999998877533 34443333333322 2
Q ss_pred hccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--C-CCCHhhHHHHHHHHHhcCChhH
Q 005476 435 SHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGRAGLVEEAYQFIKNMP--I-PPNPVIWRTLLAACRAHKNVKV 510 (695)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-~p~~~~~~~ll~a~~~~g~~~~ 510 (695)
.....++-|.+.|...-. .+.+-| +..-.++...+.-..++++.+-+++... + ..|...+ .+..+....|++.+
T Consensus 334 gSreHlKiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHH
Confidence 222345667777765533 244433 3445567777777788999988888762 2 2344444 47888999999999
Q ss_pred HHHHHHHHHhcCCCCcccHH-HHHHHHHHcCCHHHHHHHHHHH
Q 005476 511 GEESLKNLVTLEPMHSGDYI-LLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 552 (695)
|+++|-++...+..|..+|- .|+.+|.++|+.+-|..++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999988776655656665 6888999999999887766544
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=1.1e-07 Score=104.41 Aligned_cols=144 Identities=12% Similarity=0.027 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHH
Q 005476 137 LEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN--R-DVFSWNSMFSGYVKTECWREIVDLFNEM 213 (695)
Q Consensus 137 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 213 (695)
+++|...++.+++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555555554443 33344444444455555555555555554332 2 2233444444555555555555555555
Q ss_pred HHcCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 005476 214 RDLGVKFDEV-TLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQM 283 (695)
Q Consensus 214 ~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 283 (695)
.+.. |+.. .+..++..+...|++++|...+..+.+...+.+...+..+...|...|+.++|...+.++
T Consensus 399 l~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 399 LKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4432 2211 111222223334444445444444443321222333444444444455555555544443
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.5e-08 Score=95.59 Aligned_cols=228 Identities=14% Similarity=0.082 Sum_probs=141.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhc
Q 005476 292 SAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKC 371 (695)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 371 (695)
+-|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+.+.|..++.+-++. ++.++....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44556666666666666666655554 333445544555555555555555544443332 122333333333444444
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 005476 372 GLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFV 448 (695)
Q Consensus 372 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (695)
++.++|.++++...+ .|+.+...+..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+.+|-+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555555443 23444444455566666666666666666666643 44455555556666666666555555
Q ss_pred HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 005476 449 SMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPP--NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 449 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
+.... + -.| -..+|-.|.......||+..|.+.|+-++..+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 44321 1 112 245677777777788999999999999999999999
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 527 GDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
.+++.|+-+-.+.|+.++|..+++......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999887643
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=3.4e-05 Score=81.85 Aligned_cols=421 Identities=16% Similarity=0.114 Sum_probs=264.9
Q ss_pred HHcCCCchHHHHH----HHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 005476 96 FTLKQSPQEAVML----YKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGR 171 (695)
Q Consensus 96 ~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 171 (695)
+.-..+.+++.-. +.++....+..|...|..+--+....|+++.+.+.|++....- -.....|+.+-..|.-+|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhcc
Confidence 3334455555443 3334444566788889999888999999999999999987654 3456788999999999999
Q ss_pred hhHHHHHHhccCC----CCeehHHHHHH-HHH-hCCChhHHHHHHHHHHHc--C----CCCCHhHHHHHHHHHhc----c
Q 005476 172 IDIARKMFDRMSN----RDVFSWNSMFS-GYV-KTECWREIVDLFNEMRDL--G----VKFDEVTLINVLMACGR----L 235 (695)
Q Consensus 172 ~~~A~~~f~~m~~----~~~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~--g----~~pd~~t~~~ll~a~~~----~ 235 (695)
-..|..+.+.-.. |+..+--.|+. .|. +.+..++++++-.+.... + ++|- .|..+.-+|.. .
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQA 450 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcC
Confidence 9999999986543 33333333333 232 457778888877776652 1 2222 23333333321 1
Q ss_pred CC-------hhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCH
Q 005476 236 AD-------IELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMN----IKDVVAWSAMISGYSQARRC 304 (695)
Q Consensus 236 ~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~ 304 (695)
.. ..++.+.++..++.+ +.|..+.--+.--|+..++++.|.+...+.. ..+..+|..+.-.+...+++
T Consensus 451 ~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 11 234556667776665 2233443445556788889999988877753 44788999999999999999
Q ss_pred HHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccCChhHHHHH-------HH----------HHHH----hCC-------C
Q 005476 305 KEALGVFHDMQMANVVPN-EVTMVSVLSCCAVLGALETGKWV-------HL----------YVKK----KRM-------E 355 (695)
Q Consensus 305 ~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i-------~~----------~~~~----~~~-------~ 355 (695)
.+|+.+.+..... .|+ ..-...-+..-...++.+++... ++ +... .|+ .
T Consensus 530 ~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 530 KEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 9999998876653 122 00000000000112222222111 11 1111 111 1
Q ss_pred CchHHHhHHhcchh---hcCCHHHHHHHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-
Q 005476 356 LTITLGTALMDFYA---KCGLIENAVEVFKKMPLKN------VFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV- 425 (695)
Q Consensus 356 ~~~~~~~~li~~y~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~- 425 (695)
..+.++..+..... +.-..+.....+...+.++ ...|......+.+.+..++|...+.+... +.|-..
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~ 685 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSAS 685 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHH
Confidence 11222222211111 1111111112222222233 23466677788889999999988888776 555444
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHhhHHHHHH
Q 005476 426 AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGRAGLVEEAYQ--FIKNM-PIPP-NPVIWRTLLA 500 (695)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~ 500 (695)
.|......+...|..++|.+.|.... -+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|-.+..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 55555567778899999999998875 56674 6788999999999998777776 77766 5566 6789999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcc
Q 005476 501 ACRAHKNVKVGEESLKNLVTLEPMHSG 527 (695)
Q Consensus 501 a~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (695)
.+.+.|+.+.|-+.|..++++++.+|.
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999876654
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=5.4e-08 Score=88.07 Aligned_cols=161 Identities=19% Similarity=0.149 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDI 469 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 469 (695)
.-.+..+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.| +..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 44566789999999999999999999 788776 89999999999999999999999987 4555 57888999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHH
Q 005476 470 LGRAGLVEEAYQFIKNMPIPP----NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDA 545 (695)
Q Consensus 470 ~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 545 (695)
++..|++++|...|++.-..| -..+|..+..+..+.|+.+.|++.+++.++++|+.+.+...+.....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999872233 2457888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005476 546 LRVMNQMREQGI 557 (695)
Q Consensus 546 ~~~~~~m~~~~~ 557 (695)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887654
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=4.9e-06 Score=86.88 Aligned_cols=441 Identities=14% Similarity=0.120 Sum_probs=228.8
Q ss_pred CchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005476 51 NPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKA 130 (695)
Q Consensus 51 ~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 130 (695)
+-+-..+++.+.. .++.+|..+|-+-. + -..-|..|....++++|+.+-+.. |.+.-...-.+-+++
T Consensus 532 ~fykvra~lail~-----kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 532 DFYKVRAMLAILE-----KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQA 598 (1636)
T ss_pred hHHHHHHHHHHHH-----hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHH
Confidence 4444455555554 34888888885521 1 123455666667888888775432 222222233344566
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccC--CCCeehHHHHHHHHHhCCChhHHHH
Q 005476 131 CSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS--NRDVFSWNSMFSGYVKTECWREIVD 208 (695)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~ 208 (695)
+...|+-+.|-++- .+.--.-+-|..|.+.|....|.+....-. ..|......+..++.+..-+++|-+
T Consensus 599 l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagd 669 (1636)
T KOG3616|consen 599 LMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGD 669 (1636)
T ss_pred HHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhh
Confidence 66666665554332 111112345777888888777766543221 1343344444444444444555555
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH----------------HHhCCCCch--------HHHHHHH
Q 005476 209 LFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYM----------------EEKELNGNV--------KLMTAVV 264 (695)
Q Consensus 209 ~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~----------------~~~g~~~~~--------~~~~~li 264 (695)
+|+++.. || ..+..+-+-..+..|.++-+.. ...| +.|. .....-+
T Consensus 670 lfeki~d----~d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 670 LFEKIHD----FD-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred HHHHhhC----HH-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHH
Confidence 5555432 11 1111111111122222211110 0000 0000 0001122
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 005476 265 DMYAKCGHVDKARRLFEQMNIKDVV--AWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETG 342 (695)
Q Consensus 265 ~~~~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 342 (695)
.+-....++.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.- .++-.+..|.+.|.++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 2333445555555555555544332 24445555666666666666654321 123344555666666655
Q ss_pred HHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005476 343 KWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP 422 (695)
Q Consensus 343 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 422 (695)
..+-.+. .|.+.....|-+-..-.-+.|++.+|+++|-.+..|+. -|..|-++|..++.+++.++ ..|
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k-----~h~ 878 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK-----HHG 878 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----hCh
Confidence 4443222 23344444444444455556666666666666655553 35566666766666666554 234
Q ss_pred CH--HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHhhHH
Q 005476 423 ND--VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPP----NPVIWR 496 (695)
Q Consensus 423 ~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~ 496 (695)
+. .|...+..-+...|+++.|...|-+.- -|.+-+++|-..+.+++|.++-+.-+-.. -...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 43 366666777778899999888886653 25677888999999999998887653110 122332
Q ss_pred HH------HHHHHhcCChhHHHH-------------HHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 497 TL------LAACRAHKNVKVGEE-------------SLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 497 ~l------l~a~~~~g~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
.- +..+-++|-++.|.. +.+-..+ ..-+..+..++..+...|++++|.+-+-+..+.+
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 11 122334444444433 3332222 2234577788888999999999998887777654
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.8e-05 Score=85.69 Aligned_cols=570 Identities=12% Similarity=0.154 Sum_probs=301.7
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHhccCCC--CCcchHHHH-----HHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHH
Q 005476 55 SENLLEAAAILIPATTMDYALSIFHKINE--PDSSAYNIM-----IRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACT 127 (695)
Q Consensus 55 ~~~ll~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 127 (695)
+..+.+.+.+. |-...|++.|..+.. +.++ .+.+ +..|.-.-.++++++.++.|...+++-|..+...+
T Consensus 609 ra~IAqLCEKA---GL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQv 684 (1666)
T KOG0985|consen 609 RAEIAQLCEKA---GLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQV 684 (1666)
T ss_pred HHHHHHHHHhc---chHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55666777777 888888888877642 1111 1111 22344444678889999999888777776666555
Q ss_pred HHHHhccCChHHHHHHHHHHHH-----------hCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC------------
Q 005476 128 LKACSRIRALEEGEQIHAQILK-----------SGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN------------ 184 (695)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------------ 184 (695)
..-|...=..+.-.++|+.... .++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 685 atky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLke 764 (1666)
T KOG0985|consen 685 ATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 764 (1666)
T ss_pred HHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHh
Confidence 5555544344444555554432 13467888888899999999999998888765420
Q ss_pred -------C------------CeehHH------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHH-------------H
Q 005476 185 -------R------------DVFSWN------SMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTL-------------I 226 (695)
Q Consensus 185 -------~------------~~~~~~------~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-------------~ 226 (695)
| |.+.|- ..|..|.+.-++...-.+...+.+.. -+.... .
T Consensus 765 AkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 765 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred ccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChH
Confidence 1 111111 12444544433333322222222211 111111 1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH------------------------------
Q 005476 227 NVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKA------------------------------ 276 (695)
Q Consensus 227 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A------------------------------ 276 (695)
.+..-+.+.+++..-...++..+..| ..|..++|+|...|...++-.+-
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 12223334444555555555556666 34667777777766544321110
Q ss_pred ----------------------------------HHHH-----------HhcC------CCChhHHHHHHHHHHhcCCHH
Q 005476 277 ----------------------------------RRLF-----------EQMN------IKDVVAWSAMISGYSQARRCK 305 (695)
Q Consensus 277 ----------------------------------~~~f-----------~~m~------~~~~~~~~~li~~~~~~g~~~ 305 (695)
.+++ ++.. ..|+..-..-+.++...+.+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 0010 0000 012223334445555566666
Q ss_pred HHHHHHHHhHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHh-----------------------CCCCchHHH
Q 005476 306 EALGVFHDMQMANVVP-NEVTMVSVLSCCAVLGALETGKWVHLYVKKK-----------------------RMELTITLG 361 (695)
Q Consensus 306 ~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------------------~~~~~~~~~ 361 (695)
+-+++++++.-..-.. .......++-.-+-..+.....++..++-.. .+..+....
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 6666666654322110 0011111111001111111111111111100 011111222
Q ss_pred hHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 005476 362 TALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVD 441 (695)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (695)
+.||+ .-++++.|.+.-++.. ....|+.+..+-.+.|...+|++-|-+ .-|+..|.-++..+++.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHH
Confidence 22221 1233344443333332 345799999999999999999988743 235668999999999999999
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005476 442 EGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTL 521 (695)
Q Consensus 442 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 521 (695)
+-.+++....++ .-+|.++ +.|+-+|++.+++.+-++++. .||..-...+..-|...|.++.|.-++..+
T Consensus 1151 dLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--- 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--- 1220 (1666)
T ss_pred HHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---
Confidence 999999877654 5566655 579999999999999888764 467777788888999999999998888765
Q ss_pred CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCceeEEEECCEEEEeecCCCCCcchHHHHHHHHHHHHHHHH
Q 005476 522 EPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKKTPGCSLIELDGEIYEFLAEDNMCPHFKEVYDATENMMKRIKS 601 (695)
Q Consensus 522 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~ 601 (695)
+.|..|+..+...|.+..|...-++......-|..+... +++.-.++..-...|- --..+.+++|...-++
T Consensus 1221 -----SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaC--vd~~EFrlAQiCGL~i--ivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1221 -----SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFAC--VDKEEFRLAQICGLNI--IVHADELEELIEYYQD 1291 (1666)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH--hchhhhhHHHhcCceE--EEehHhHHHHHHHHHh
Confidence 567788888888888777765544332211111111111 1111111100000010 0012456677777778
Q ss_pred cCcccCCCccccc-CC-hhhhhhhh--------hhchHHHHHHHhhhcCCCCCcEEEEccccccCCccchhhhh
Q 005476 602 AGYVPNTADARLD-AE-EDDKEASV--------AHHSEKLAIAFGLIRASPGTTIRISKNLRVCTDCHNATKII 665 (695)
Q Consensus 602 ~g~~pd~~~~~~~-~~-~~~~~~~~--------~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 665 (695)
.||.-+-+..+.. +. |..|-+.. .+.++||-.-..|.-+. +.|-|-+|.|..-|-+-+++
T Consensus 1292 rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsR----vNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSR----VNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHH
Confidence 8876554443311 11 11111111 13334443333333332 45568888888877666554
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=4.6e-05 Score=79.29 Aligned_cols=323 Identities=12% Similarity=0.135 Sum_probs=180.9
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHhHHHHHHH------HHhccCChhHHHHHHHHHHHhCCCCchH
Q 005476 186 DVFSWNSMFSGYVKTECWREIVDLFNEMRDLG-VKFDEVTLINVLM------ACGRLADIELGGWISEYMEEKELNGNVK 258 (695)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 258 (695)
....|..+..++--.|+...|..++++..+.. -.|+...|..... .....|.++.+.+.+..-... +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 44567777777777777777777777776543 2355554433222 233455656655554433222 122233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHH-HHHHHHhcCCHHHHH-HHHHHhHHCC---CCCCHHHHHHHHH
Q 005476 259 LMTAVVDMYAKCGHVDKARRLFEQMNIK--DVVAWSA-MISGYSQARRCKEAL-GVFHDMQMAN---VVPNEVTMVSVLS 331 (695)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g---~~pd~~t~~~ll~ 331 (695)
.--.-.+.+.+.+++++|..++..+..+ |...|+- +..++.+-.+.-+++ .+|....+.- -.|-.... +
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----s 296 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----S 296 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----H
Confidence 3344556778888888888888887654 4444443 334443333344444 5555544321 11111111 1
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHH---H-HHHHHhcC--------------CCCChhHHH
Q 005476 332 CCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIE---N-AVEVFKKM--------------PLKNVFFWT 393 (695)
Q Consensus 332 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~---~-A~~~~~~~--------------~~~~~~~~~ 393 (695)
......-.+....++....+.|+++- +..+...|-.-...+ + +..+...+ ..|....|.
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 11112222333444555555665443 222333232211111 0 11111111 123444555
Q ss_pred H--HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 005476 394 V--LIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDIL 470 (695)
Q Consensus 394 ~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 470 (695)
. ++..|-..|+++.|+.+.+.... -.|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-.--+.-.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHH
Confidence 4 55677889999999999999887 678877 666666788999999999999998864 3346666555667778
Q ss_pred hhcCCHHHHHHHHHhCCCCC-C--------HhhHHHHH--HHHHhcCChhHHHHHHHHHHh
Q 005476 471 GRAGLVEEAYQFIKNMPIPP-N--------PVIWRTLL--AACRAHKNVKVGEESLKNLVT 520 (695)
Q Consensus 471 ~~~g~~~~A~~~~~~m~~~p-~--------~~~~~~ll--~a~~~~g~~~~a~~~~~~~~~ 520 (695)
.|+.+.++|.++.....-.. + .-.|-.+- .+|.++|++.+|.+-|..+-+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 89999999988877652111 1 12344433 457788888888776665544
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.90 E-value=2.1e-05 Score=81.78 Aligned_cols=430 Identities=12% Similarity=0.074 Sum_probs=235.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 005476 88 AYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYA 167 (695)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 167 (695)
.+..++..| ..+++...+.+.+.+++. .+-...|....--.+...|+.++|.......++.. ..+.+.|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 344444444 456777777777777663 22233444444344456677777777776666543 345566666666666
Q ss_pred hcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCChhHHHH
Q 005476 168 NCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDE-VTLINVLMACGRLADIELGGW 243 (695)
Q Consensus 168 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~ 243 (695)
...++++|.+.|..... .|...|.-+.---++.|+++.....-.++.+. .|.. ..|.....+.--.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888876533 35556666666666777777777776666653 3333 346666666667778888888
Q ss_pred HHHHHHHhCC-CCchHHHHHHHH------HHHhcCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005476 244 ISEYMEEKEL-NGNVKLMTAVVD------MYAKCGHVDKARRLFEQMNIK--D-VVAWSAMISGYSQARRCKEALGVFHD 313 (695)
Q Consensus 244 ~~~~~~~~g~-~~~~~~~~~li~------~~~~~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (695)
+.+...+... .|+...+.-... ...+.|..+.|.+.+...... | ...-......+.+.++.++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 8777777652 344444332222 234567777777766655432 2 22233445566777788888888877
Q ss_pred hHHCCCCCCHHHHHHHHHHHhc-cCChhHH-HHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhH
Q 005476 314 MQMANVVPNEVTMVSVLSCCAV-LGALETG-KWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFF 391 (695)
Q Consensus 314 m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a-~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 391 (695)
++.. .||..-|.-.+..+.- ..+.-++ ..++...-+.-.... .|--..
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e----------------------------~p~Rlp 294 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE----------------------------CPRRLP 294 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc----------------------------cchhcc
Confidence 7765 4676666655554431 1111111 123322221100000 000000
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH-HHHHHHHchhhcC----------CCCCh
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDE-GRELFVSMSRDFD----------LEPRM 460 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~~~~----------~~p~~ 460 (695)
.+. .....-.+..-+++..+.+.|++|--..+.++..-=-+..-+++ +..+...+... | -+|+.
T Consensus 295 lsv----l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 295 LSV----LNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTT 369 (700)
T ss_pred HHH----hCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchH
Confidence 000 00011122233455556666665433333333211001111111 12222222111 1 13443
Q ss_pred --hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 005476 461 --EHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNPV-IWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIY 536 (695)
Q Consensus 461 --~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (695)
.++-.++..|-+.|+++.|..+++.. +-.|+.+ .|..-...+...|+++.|-..++++.+++-.|...-.--++-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34456777788888888888888876 4344433 3334445677788888888888888888865543333455556
Q ss_pred HHcCCHHHHHHHHHHHHhCCC
Q 005476 537 ASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 537 ~~~g~~~~a~~~~~~m~~~~~ 557 (695)
.++.+.++|.++.......|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 678888888888888776653
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=6.3e-07 Score=90.03 Aligned_cols=217 Identities=11% Similarity=-0.008 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHhHHCC-CCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHH
Q 005476 302 RRCKEALGVFHDMQMAN-VVPN--EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAV 378 (695)
Q Consensus 302 g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (695)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+..+++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555554321 1121 1234444445556666666666666666544 334566777777777788888888
Q ss_pred HHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcC
Q 005476 379 EVFKKMPL--K-NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFD 455 (695)
Q Consensus 379 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 455 (695)
..|++..+ | +...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|.+.|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 87777643 2 456778888888889999999999999888 566554222222234456789999999976543 3
Q ss_pred CCCChhHHHHHHHHHhhcCCHH--HHHHHHHhC-CC----CC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 005476 456 LEPRMEHYGCMVDILGRAGLVE--EAYQFIKNM-PI----PP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m-~~----~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
..|+...+ .++..+ .|+.. ++.+.+.+- .. .| ....|..+...+.+.|++++|+..|+++++.+|.+.
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 34443322 333333 44443 333333321 11 12 235788899999999999999999999999997553
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=1.1e-05 Score=84.33 Aligned_cols=195 Identities=17% Similarity=0.241 Sum_probs=134.2
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005476 330 LSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERAL 409 (695)
Q Consensus 330 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 409 (695)
+.+......+..|..|.+.+..... ....|.-+.+-|+..|+++.|+++|.+.. .++--|..|.+.|++++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 4444556677777777776665432 23345667788889999999999987653 3455678889999999988
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 005476 410 ETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIP 489 (695)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 489 (695)
++-++.. |.......|..-..-.-..|++.+|.+++-.+- .|+. -|.+|-+.|..++.+++.++-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 8866543 334444566666666777888888888775442 3543 467888899999988888875211
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 490 PNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 490 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
.-..|..-+..-+-..|+++.|+.-|-++ .-|-.-.++|-..+.|++|.++-+.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 12335555666677888888888776654 3455677888888888888776553
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=1.5e-05 Score=84.93 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 507 NVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
=+++|.++++-+.+..|++..+|..--.+|.+.|++--|++.+.+
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 468899999999999999999999999999999999988887653
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.3e-07 Score=89.51 Aligned_cols=231 Identities=12% Similarity=0.098 Sum_probs=187.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHH-HHHHH
Q 005476 256 NVKLMTAVVDMYAKCGHVDKARRLFEQMN--IKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMV-SVLSC 332 (695)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~a 332 (695)
|..--+.+..+|.+.|.+.+|.+.|.+-. .+-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. .+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 33444778899999999999999998864 356788999999999999999999999988764 67777664 45567
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHH
Q 005476 333 CAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERAL 409 (695)
Q Consensus 333 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 409 (695)
+...++.+.+.++++...+.. +.++....++...|.-.++++.|...++++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 788899999999999998865 45666667777888889999999999998764 57788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 005476 410 ETYYIMREKNIEPNDV--AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM- 486 (695)
Q Consensus 410 ~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 486 (695)
.-|++....--.|+.. .|..+-......|++..|.+.|..... .-..+.+.++.|.-.-.|.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998866667654 666777777788999999999988764 33345678888888888999999999998876
Q ss_pred CCCCC
Q 005476 487 PIPPN 491 (695)
Q Consensus 487 ~~~p~ 491 (695)
...|+
T Consensus 457 s~~P~ 461 (478)
T KOG1129|consen 457 SVMPD 461 (478)
T ss_pred hhCcc
Confidence 23444
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=9.8e-06 Score=85.83 Aligned_cols=385 Identities=15% Similarity=0.107 Sum_probs=235.7
Q ss_pred CCchhHHHHHH--HHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhC-C--------CC
Q 005476 50 LNPTISENLLE--AAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQN-S--------VE 118 (695)
Q Consensus 50 ~~~~~~~~ll~--~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~ 118 (695)
-|+.+-.++++ +|..- |+.|.|.+-.+.+.. -..|..|.+.+++..+.+-|.-.+..|... | -.
T Consensus 724 Cd~~TRkaml~FSfyvti---G~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTI---GSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEe---ccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 46667777764 57777 999999888777653 456999999999999998888777666431 1 12
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC-CCeehHHHHHHHH
Q 005476 119 PDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN-RDVFSWNSMFSGY 197 (695)
Q Consensus 119 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~ 197 (695)
|+ .+=..+.-.....|.+++|+.++.+..+.+ .|=..|-..|.+++|.++-+.-.. .=..||..-...+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 22 222233333457789999999999988753 355667788999999888754322 1112455555566
Q ss_pred HhCCChhHHHHHHHHH----------HHcC---------CCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchH
Q 005476 198 VKTECWREIVDLFNEM----------RDLG---------VKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVK 258 (695)
Q Consensus 198 ~~~g~~~~A~~~~~~m----------~~~g---------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 258 (695)
-..++.+.|++.|++- +... -+-|...|..-..-.-..|+.+.|..++.....
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 6677888888877653 2211 112333344444445556777777777665543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccC-
Q 005476 259 LMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLG- 337 (695)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~- 337 (695)
|-+++...|-.|+.++|-++-++- .|..+.-.+..-|-..|++.+|+..|.+.+ +|...|+.|-..+
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDM 1008 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCH
Confidence 345566666778888887776653 355667778888999999999999998765 3444444332221
Q ss_pred --------------ChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCC--------------CCCh
Q 005476 338 --------------ALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP--------------LKNV 389 (695)
Q Consensus 338 --------------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------------~~~~ 389 (695)
+.-.|-.+|++ .|.. ....+..|-|.|.+.+|+++--+-. ..|+
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 12222222222 2211 1223456778888888776532221 1355
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC----hhHHHH
Q 005476 390 FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR----MEHYGC 465 (695)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 465 (695)
...+--...++.+.++++|..++-..++ |...+..|...+ +.-..++-+.|.-...-.|+ ......
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 5556556667778888888888776654 444555555433 22233333334322112232 345666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC
Q 005476 466 MVDILGRAGLVEEAYQFIKNMP 487 (695)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~m~ 487 (695)
+.+.+.++|.+..|-+-|.+.+
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhh
Confidence 7778888888888887777765
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00029 Score=76.76 Aligned_cols=493 Identities=13% Similarity=0.142 Sum_probs=256.5
Q ss_pred cCCChHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC--CCcchHHHHHHHHHcCCCchHHHHH
Q 005476 31 KTTKDLNQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINE--PDSSAYNIMIRAFTLKQSPQEAVML 108 (695)
Q Consensus 31 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 108 (695)
+..+.++.+--...+.|..||. -.+++-..+ -.++.+.++...+++ +...-.+.+...+...+....+..+
T Consensus 492 AE~Gqf~KiilY~kKvGyTPdy---mflLq~l~r----~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSF 564 (1666)
T KOG0985|consen 492 AETGQFKKIILYAKKVGYTPDY---MFLLQQLKR----SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSF 564 (1666)
T ss_pred HHhcchhHHHHHHHHcCCCccH---HHHHHHHHc----cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHH
Confidence 3334444444445555665553 233333333 245555555555443 2333455556666555555566555
Q ss_pred HHHHHhCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC--C
Q 005476 109 YKTMLQNSVEPDRFTFAC-TLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN--R 185 (695)
Q Consensus 109 ~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~ 185 (695)
+-..++. ..|+....-+ +|.. ++-.|-++-+.+.-.+. -...-+..+.+.|.+.|-+..|++.+..+.+ +
T Consensus 565 LLdaLK~-~~Pd~g~LQTrLLE~-----NL~~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR 637 (1666)
T KOG0985|consen 565 LLDALKL-NSPDEGHLQTRLLEM-----NLVHAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKR 637 (1666)
T ss_pred HHHHhcC-CChhhhhHHHHHHHH-----HhccchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHHHH
Confidence 5555442 3344332221 1111 11122233333333321 2222367788899999999999998887764 2
Q ss_pred CeehHHH----HHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH-----------
Q 005476 186 DVFSWNS----MFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEE----------- 250 (695)
Q Consensus 186 ~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----------- 250 (695)
.++.-+. -+-.|.-.-.++++++.++.|...+++.|..+...+..-|...=..+.-.++|+....
T Consensus 638 ~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSi 717 (1666)
T KOG0985|consen 638 VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSI 717 (1666)
T ss_pred HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHH
Confidence 2221111 1234444556889999999999999888887776666666554444444445544332
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------C------------ChhHH------HH
Q 005476 251 KELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI-------------------K------------DVVAW------SA 293 (695)
Q Consensus 251 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------------------~------------~~~~~------~~ 293 (695)
-++..|+.+.--.|.+-++.|++.+.+++.++-.- | |.+.| --
T Consensus 718 vn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~k 797 (1666)
T KOG0985|consen 718 VNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQK 797 (1666)
T ss_pred hccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHH
Confidence 13456777777889999999999999988775420 0 11211 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHH-H------------HHHHHHhccCChhHHHHHHHHHHHhCCCCchHH
Q 005476 294 MISGYSQARRCKEALGVFHDMQMANVVPNEVTM-V------------SVLSCCAVLGALETGKWVHLYVKKKRMELTITL 360 (695)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~------------~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 360 (695)
.|..|++.-++...-.+...+.... -+.... + -+..-+.+.+++..-..+++..+..| ..|+.+
T Consensus 798 yIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~ 874 (1666)
T KOG0985|consen 798 YIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPAT 874 (1666)
T ss_pred HHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHH
Confidence 3445555444333333332222221 111111 1 12222334444444455555555555 456777
Q ss_pred HhHHhcchhhcCCHHHH----------------------------------------------------HHHHhcC----
Q 005476 361 GTALMDFYAKCGLIENA----------------------------------------------------VEVFKKM---- 384 (695)
Q Consensus 361 ~~~li~~y~~~g~~~~A----------------------------------------------------~~~~~~~---- 384 (695)
+|+|...|....+-.+- +-+.++.
T Consensus 875 hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~L 954 (1666)
T KOG0985|consen 875 HNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDL 954 (1666)
T ss_pred HhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHH
Confidence 77777777654332111 0000000
Q ss_pred ------------------------C-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------------C
Q 005476 385 ------------------------P-LKNVFFWTVLIQCLASNGQGERALETYYIMREKNIE-----------------P 422 (695)
Q Consensus 385 ------------------------~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------------p 422 (695)
+ ..|+..-+.-+.++...+-+.+-++++++..-..-. .
T Consensus 955 W~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika 1034 (1666)
T KOG0985|consen 955 WAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA 1034 (1666)
T ss_pred HHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc
Confidence 0 012222233334444444455555555554421100 0
Q ss_pred CHH---HHHH---------HHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005476 423 NDV---AFIA---------VLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPP 490 (695)
Q Consensus 423 ~~~---t~~~---------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 490 (695)
|.. .|.. +...+...+.+++|..+|+..- .+....+.|+ -..+.++.|.++-++..
T Consensus 1035 d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLi---e~i~~ldRA~efAe~~n--- 1102 (1666)
T KOG0985|consen 1035 DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLI---ENIGSLDRAYEFAERCN--- 1102 (1666)
T ss_pred ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHH---HHhhhHHHHHHHHHhhC---
Confidence 000 0000 0011222334444444443321 1122222222 13345555555555542
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 491 NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 491 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
.+..|..+..|-.+.|.+.+|++.+-++ +|++.|...++...+.|+|++-.+++...+++.-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 4567999999999999998888776543 6788999999999999999999999887776543
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3e-05 Score=76.26 Aligned_cols=159 Identities=12% Similarity=0.021 Sum_probs=73.7
Q ss_pred CCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHH---HHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 005476 152 FGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSM---FSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINV 228 (695)
Q Consensus 152 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 228 (695)
++.|+.....+...|...|+.++|...|++...-|..+...| .-.+.+.|+++....+...+.... +-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 344555666666666666666666666665443333222222 112334555555555555543321 1111112222
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHhcCCHH
Q 005476 229 LMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMN--I-KDVVAWSAMISGYSQARRCK 305 (695)
Q Consensus 229 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~ 305 (695)
+...-...+++.|..+-+..++.. +.++..+-.-...+...|+.++|.-.|+... . -+..+|.-|+.+|...|...
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 222233344555554444444432 2223333333344455555555555555432 2 24555555666666555555
Q ss_pred HHHHHHH
Q 005476 306 EALGVFH 312 (695)
Q Consensus 306 ~A~~~~~ 312 (695)
+|.-+-+
T Consensus 386 EA~~~An 392 (564)
T KOG1174|consen 386 EANALAN 392 (564)
T ss_pred HHHHHHH
Confidence 5554433
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.79 E-value=5.2e-05 Score=82.48 Aligned_cols=509 Identities=14% Similarity=0.025 Sum_probs=281.5
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHHccCCCCCHHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHH
Q 005476 37 NQVHAHLIKSRFHLN-PTISENLLEAAAILIPATTMDYALSIFHKINE---PDSSAYNIMIRAFTLKQSPQEAVMLYKTM 112 (695)
Q Consensus 37 ~~~~~~~~~~g~~~~-~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 112 (695)
..+|..+....++++ ...|..|-..|... .+...|.+-|+..-+ .|..+|-.....|++...++.|..+.-..
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~---~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDS---DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 566776666666554 34577777888777 788889999987654 56678999999999999999999884333
Q ss_pred HhCCC-CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHH
Q 005476 113 LQNSV-EPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWN 191 (695)
Q Consensus 113 ~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 191 (695)
-+... ..-...|...--.+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 22211 0011223333334556778888888888888775 668889999999999999999999999887764444333
Q ss_pred H---HHHHHHhCCChhHHHHHHHHHHHc------CCCCCHhHHHHHHHHHhccCC-------hhHHHHHHHHHHHhCCCC
Q 005476 192 S---MFSGYVKTECWREIVDLFNEMRDL------GVKFDEVTLINVLMACGRLAD-------IELGGWISEYMEEKELNG 255 (695)
Q Consensus 192 ~---li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~-------~~~a~~~~~~~~~~g~~~ 255 (695)
. .....+..|.+.+|+..+...... +..--..++..+...+...|- ++.+.+.+..........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 123345678899999888876532 111112223222222222222 222333333333222222
Q ss_pred chHHHHHHHHHHHhcCCHH------HHHHH----HHhcC---------------------CCChhHHHHHHHHHHh----
Q 005476 256 NVKLMTAVVDMYAKCGHVD------KARRL----FEQMN---------------------IKDVVAWSAMISGYSQ---- 300 (695)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~------~A~~~----f~~m~---------------------~~~~~~~~~li~~~~~---- 300 (695)
+...|-.+-+++.-.-..+ .-..+ ++.+. ..+..+|..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 3333322222211100000 00000 11111 0134566666665544
Q ss_pred ----cCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC-CCchHHHhHHhcchhhcCCHH
Q 005476 301 ----ARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRM-ELTITLGTALMDFYAKCGLIE 375 (695)
Q Consensus 301 ----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~ 375 (695)
..+...|+..+.+..+. ..|...+-..+......|++..+ .|..+...-. +....+|..+.-.+.+..+++
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~a--QHCfIks~~sep~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACA--QHCFIKSRFSEPTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhh--hhhhhhhhhccccchhheeccceeEEecccHH
Confidence 12234677777777654 33433333444444444554444 4444444332 445667777888889999999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH--HH--CCCC---------------------------
Q 005476 376 NAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIM--RE--KNIE--------------------------- 421 (695)
Q Consensus 376 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m--~~--~g~~--------------------------- 421 (695)
.|...|..... .|...|-.+.......|+.-+++.+|..- .. .|--
T Consensus 868 ~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 868 HAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred HhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 99999988764 25566655555555566666666655541 11 1111
Q ss_pred ----------------CC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHH----HHHHHhhcCCHHHHH
Q 005476 422 ----------------PN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGC----MVDILGRAGLVEEAY 480 (695)
Q Consensus 422 ----------------p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~ 480 (695)
|+ ...|........+.+.+..|.+...+...-...+-+...|+. +...+...|.++.|.
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 22 223444444444444444444444333221111223333332 223344456666665
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 481 QFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG---DYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 481 ~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.-+...+...|..+-.+-+.. .-.++++.+.+.|++++.+-..+.. ....++..-...+.-+.|...+-+...
T Consensus 1028 ~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1028 KASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 555544444444444443333 3357899999999999986543333 222444455667777888877666554
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.0001 Score=75.98 Aligned_cols=408 Identities=11% Similarity=0.066 Sum_probs=242.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHH--HHHHHH--hCCCh
Q 005476 128 LKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNS--MFSGYV--KTECW 203 (695)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~--~~g~~ 203 (695)
++-....+++++|.+....++..+ +.|...+..=+-+..+.+++++|+.+.+.-... .+++. +=.+|+ +.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455667789999999999998876 666777777778888999999999777654321 12222 234554 78999
Q ss_pred hHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHH
Q 005476 204 REIVDLFNEMRDLGVKFDEV-TLINVLMACGRLADIELGGWISEYMEEKELNG-NVKLMTAVVDMYAKCGHVDKARRLFE 281 (695)
Q Consensus 204 ~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~ 281 (695)
++|+..++ |..++.. +...-...|-+.++++++..+|+.+.+.+.+. +...-..++..-. .-.+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHH
Confidence 99999988 3444433 55556677889999999999999999887543 3333333332211 11121 344
Q ss_pred hcCCCChhHHHHH---HHHHHhcCCHHHHHHHHHHhHHCC-------------CCCCHH-HHHHHHHHHhccCChhHHHH
Q 005476 282 QMNIKDVVAWSAM---ISGYSQARRCKEALGVFHDMQMAN-------------VVPNEV-TMVSVLSCCAVLGALETGKW 344 (695)
Q Consensus 282 ~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------------~~pd~~-t~~~ll~a~~~~~~~~~a~~ 344 (695)
..+.....+|..+ ...+...|++.+|++++....+.+ +.-+.. .-.-+.-++-..|+.+++..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4444333333333 445778999999999998883211 111111 11223335567899999999
Q ss_pred HHHHHHHhCCCCchH---HHhHHhcchhhcCCHH-HHHHHHhcCCCCChh--------------HHH-HHHHHHHhcCCh
Q 005476 345 VHLYVKKKRMELTIT---LGTALMDFYAKCGLIE-NAVEVFKKMPLKNVF--------------FWT-VLIQCLASNGQG 405 (695)
Q Consensus 345 i~~~~~~~~~~~~~~---~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~--------------~~~-~li~~~~~~g~~ 405 (695)
++..+++......+. ..|-|+.+-....-++ .++..++........ ..| .++..|. +..
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~ 323 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKM 323 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhH
Confidence 999999987543322 2333333222111111 233334333222221 122 2222222 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--ccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 005476 406 ERALETYYIMREKNIEPNDVAFIAVLSACSHV--GMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGRAGLVEEAYQF 482 (695)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 482 (695)
+.+.++-.... +..|. ..+..++..+.+. ....++.+++..... +.+-. ..+.-.++......|+++.|.++
T Consensus 324 ~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 324 DQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33333322211 12333 2444555554332 246777777776654 22222 45666778888999999999999
Q ss_pred HH--------hC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CC---CCcccHHHHHHHHHHcCCHHHHH
Q 005476 483 IK--------NM-PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTL----EP---MHSGDYILLSDIYASAGRCEDAL 546 (695)
Q Consensus 483 ~~--------~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~ 546 (695)
+. .. .+.-.+.+..++..-+.+.++.+.|..++..++.- .+ .-...+-.++..-.+.|+-++|.
T Consensus 399 l~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 98 33 12223344566777777888888888888887762 12 11223444555556779999999
Q ss_pred HHHHHHHhC
Q 005476 547 RVMNQMREQ 555 (695)
Q Consensus 547 ~~~~~m~~~ 555 (695)
.+++++.+.
T Consensus 479 s~leel~k~ 487 (652)
T KOG2376|consen 479 SLLEELVKF 487 (652)
T ss_pred HHHHHHHHh
Confidence 999999873
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=0.00057 Score=80.91 Aligned_cols=258 Identities=16% Similarity=0.088 Sum_probs=134.8
Q ss_pred HHhcCCHHHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhccCChhHHHHHHHHHHHhCCC-----CchHHHhHHhcch
Q 005476 298 YSQARRCKEALGVFHDMQMANVVPNE----VTMVSVLSCCAVLGALETGKWVHLYVKKKRME-----LTITLGTALMDFY 368 (695)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-----~~~~~~~~li~~y 368 (695)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+.......-. ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34455555555555554432111111 12233333444555666655555554432110 1112333344455
Q ss_pred hhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 005476 369 AKCGLIENAVEVFKKMPL-------K----NVFFWTVLIQCLASNGQGERALETYYIMREK--NIEPN--DVAFIAVLSA 433 (695)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a 433 (695)
...|+++.|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 556666666665544321 0 1122334444556667888887777776442 11122 1234444555
Q ss_pred HhccccHHHHHHHHHHchhhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----hhHHHHHHHH
Q 005476 434 CSHVGMVDEGRELFVSMSRDFDLEPRMEHY-----GCMVDILGRAGLVEEAYQFIKNMPIP--PNP----VIWRTLLAAC 502 (695)
Q Consensus 434 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~a~ 502 (695)
....|+.++|.+.+...............+ ......+...|+.+.|.+.+...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 667788888877777664311111111111 11123445578888888887665211 111 1134555667
Q ss_pred HhcCChhHHHHHHHHHHhcC------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 503 RAHKNVKVGEESLKNLVTLE------PMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
...|++++|...++++++.. +....++..++.+|.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888887642 112235667788888888888888888888764
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=1.3e-06 Score=86.57 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=113.6
Q ss_pred hHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 005476 362 TALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSH----V 437 (695)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~ 437 (695)
.....+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++.. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCc
Confidence 33345677789999999888775 5666677788899999999999999999987 555544 3344444332 3
Q ss_pred ccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCCh-hHHHHH
Q 005476 438 GMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNV-KVGEES 514 (695)
Q Consensus 438 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~-~~a~~~ 514 (695)
..+++|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++. ...| |..++-.++......|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 468899999999865 45677888888888888999999998888774 3344 455666677777777777 667788
Q ss_pred HHHHHhcCCCCc
Q 005476 515 LKNLVTLEPMHS 526 (695)
Q Consensus 515 ~~~~~~~~p~~~ 526 (695)
+.++....|+.+
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 888888888754
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=2.1e-05 Score=83.81 Aligned_cols=282 Identities=13% Similarity=0.065 Sum_probs=147.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHh----c--c
Q 005476 266 MYAKCGHVDKARRLFEQMNIK--DVV-AWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCA----V--L 336 (695)
Q Consensus 266 ~~~~~g~~~~A~~~f~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~----~--~ 336 (695)
.+...|++++|++.++.-... |.. ........+.+.|+.++|..+|+.++..+ ||...|-..+..|. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 345556666666666554322 322 33444555666666666666666666653 55555444444433 1 1
Q ss_pred CChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHH-HHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHH
Q 005476 337 GALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIE-NAVEVFKKMPLKNV-FFWTVLIQCLASNGQGERALETYYI 414 (695)
Q Consensus 337 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 414 (695)
.+.+.-..+++.+...-...+ ....+.-.+.....+. .+...+..+..+.+ ..++.+-..|.......-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~--~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSD--APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCcccc--chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 134444555555544321111 1111111111111222 22223333333333 3344444445444444444444444
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHH
Q 005476 415 MREK----N----------IEPNDV--AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGRAGLVE 477 (695)
Q Consensus 415 m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 477 (695)
.... | -.|... ++.-+...|...|++++|.++.+..+. ..|+ ++.|..-...|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHH
Confidence 4321 1 122222 334445556777888888888777763 3454 667777777777888888
Q ss_pred HHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC-------cccHHHHHHHHHHcCCHHHHH
Q 005476 478 EAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLE--PMH-------SGDYILLSDIYASAGRCEDAL 546 (695)
Q Consensus 478 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~ 546 (695)
+|.+.++.. ...+ |..+=+-....+.+.|++++|++.+....+.+ |.. .......+.+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 887777765 2222 44444445555677788888877777765544 211 001235677788888888888
Q ss_pred HHHHHHHh
Q 005476 547 RVMNQMRE 554 (695)
Q Consensus 547 ~~~~~m~~ 554 (695)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 77766554
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=2.9e-05 Score=72.97 Aligned_cols=404 Identities=11% Similarity=0.077 Sum_probs=202.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC--CCeehHHH-HHHHHHhC
Q 005476 124 FACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN--RDVFSWNS-MFSGYVKT 200 (695)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~ 200 (695)
|.+++..+.+..+++.+.+++..-.+.. +.+..-.+.|..+|-+..++..|-..++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3444444444445555555554444332 22333444445555555555555555555433 22111211 12334455
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH--hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 005476 201 ECWREIVDLFNEMRDLGVKFDEVTLINVLMAC--GRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARR 278 (695)
Q Consensus 201 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (695)
+.+..|+++...|.+. |+...-..-+.+. -+.+|+..++.+.++.-.. .+..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6666666666665432 1111111111111 1345555555555544321 234444455555567777777777
Q ss_pred HHHhcCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHH----HHHHHHHHhccCChhHHHHHHHHHH
Q 005476 279 LFEQMNIK----DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVT----MVSVLSCCAVLGALETGKWVHLYVK 350 (695)
Q Consensus 279 ~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~~~ 350 (695)
-|....+- ...+||.-+..| +.|++..|+++..++.+.|++-.+.. .+-.+.+ ..+..-..++...
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh~Sa- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQSA- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHHHHH-
Confidence 77766532 455666655444 55677777777777777765421110 0000000 0000000111100
Q ss_pred HhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 005476 351 KKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLK-----NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-D 424 (695)
Q Consensus 351 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 424 (695)
-+..+|.-...+.+.|+.+.|.+.+-.|+.+ |+++...+.-. -..+++.+..+-+.-+.+ +.|- .
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~--~nPfP~ 310 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ--QNPFPP 310 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh--cCCCCh
Confidence 1123344445577889999999999999853 66765544322 124556566666666666 3453 4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHchhhcCCC-CChhHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHhhHHHHHHH-
Q 005476 425 VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLE-PRMEHYGCMVDILG-RAGLVEEAYQFIKNMPIPPNPVIWRTLLAA- 501 (695)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a- 501 (695)
.||..++-.|++..-++.|-.++.+-.. +... .+...|+ |++++. -.-..++|.+-++.+...-....-..-+..
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999988888754321 0111 1233343 334443 344677776665554100000000011111
Q ss_pred HHhcCC----hhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 502 CRAHKN----VKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 502 ~~~~g~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
-.++.+ ...+.+-+++.+++.- .....-++.|.+..++..+.++|..-.+
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 112222 2233344445554431 1455677888999999999999987665
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=4.5e-07 Score=92.71 Aligned_cols=218 Identities=13% Similarity=0.108 Sum_probs=162.5
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 005476 334 AVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALE 410 (695)
Q Consensus 334 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 410 (695)
.+.|++..|.-.|+..++.. +.+...|.-|.......++=..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666666654 44556666666666666666666666665543 355666667777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHH--------HHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 005476 411 TYYIMREKNIEPNDVAFIA--------VLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQF 482 (695)
Q Consensus 411 l~~~m~~~g~~p~~~t~~~--------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 482 (695)
.+++-+... |-..-... .-........+....++|-.+....+..+|.+++.+|.-+|.-.|.+++|.+-
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 888765522 11100000 00122333445666777777777667678999999999999999999999999
Q ss_pred HHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 483 IKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 483 ~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
|+.. ..+| |..+||-|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9986 6677 6789999999999999999999999999999999888999999999999999999999887765
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.69 E-value=3.2e-06 Score=76.82 Aligned_cols=199 Identities=12% Similarity=0.033 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcch
Q 005476 290 AWSAMISGYSQARRCKEALGVFHDMQMANVVPN-EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFY 368 (695)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 368 (695)
+..-|.-+|.+.|+...|..-+++.++.. |+ ..++..+...|...|..+.|.+-|+.+++..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--------------- 99 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--------------- 99 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---------------
Confidence 34445556666666666666666666542 32 2244444444444444444444444433322
Q ss_pred hhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHH
Q 005476 369 AKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPND-VAFIAVLSACSHVGMVDEGRELF 447 (695)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 447 (695)
..+-...|....-+|.+|++++|...|++....-.-|.. .||..+.-+..+.|+.+.|..+|
T Consensus 100 -----------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 100 -----------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred -----------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 123344555555566666666666666666653222222 25666655556666666666666
Q ss_pred HHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 005476 448 VSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM--PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPM 524 (695)
Q Consensus 448 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 524 (695)
++..+ +.| .......+.....+.|++-.|..+++.. ...++..+....+..-...||.+.+-+.=.++.+..|.
T Consensus 163 ~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 163 KRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 66553 223 2445556666666666666666666654 22345555545555556667766666666666666665
Q ss_pred C
Q 005476 525 H 525 (695)
Q Consensus 525 ~ 525 (695)
.
T Consensus 240 s 240 (250)
T COG3063 240 S 240 (250)
T ss_pred c
Confidence 4
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=3.1e-05 Score=80.63 Aligned_cols=256 Identities=11% Similarity=-0.024 Sum_probs=138.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhc
Q 005476 297 GYSQARRCKEALGVFHDMQMANVVPNE-VTMVSVLSCCAV----LGALETGKWVHLYVKKKRMELTITLGTALMDFYAKC 371 (695)
Q Consensus 297 ~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 371 (695)
.+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.... .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 445667777777777776654 2332 22221 111112 2333333333322 1111122223334455667777
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH--HHHHHHHHHhccccHHHHHH
Q 005476 372 GLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNI-EPNDV--AFIAVLSACSHVGMVDEGRE 445 (695)
Q Consensus 372 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~--t~~~ll~a~~~~g~~~~a~~ 445 (695)
|++++|.+.+++... .+...+..+...|...|++++|+.++++.....- .|+.. .|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 788888777776643 3455667777777788888888888877766321 12222 34456666777888888888
Q ss_pred HHHHchhhcCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HHh---C-CCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 005476 446 LFVSMSRDFDLEPRMEHY-G--CMVDILGRAGLVEEAYQF---IKN---M-PIPPNPVIWRTLLAACRAHKNVKVGEESL 515 (695)
Q Consensus 446 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 515 (695)
+++.........+..... + .+..-+...|..+.+.+. ... . +.............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 887764321111111111 1 222233333422222221 111 1 11111122234555677888889898888
Q ss_pred HHHHhcC-C--------CCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 516 KNLVTLE-P--------MHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 516 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
+.+.... . .........+.++...|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876632 1 123345677778899999999999999887644
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.8e-05 Score=78.36 Aligned_cols=216 Identities=12% Similarity=0.051 Sum_probs=126.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCCh----------hHHHHHH
Q 005476 327 VSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNV----------FFWTVLI 396 (695)
Q Consensus 327 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~li 396 (695)
..+.++..+..+++.+.+-+...+... .+...++....+|...|...+....-+...+..- .+..-+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555544 4444444555555555555444433332221110 0111233
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChh-HHHHHHHHHhhcCC
Q 005476 397 QCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRME-HYGCMVDILGRAGL 475 (695)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 475 (695)
.+|.+.++++.|+..|++.......||..+ +....+++....+... -+.|... -...=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 456666778888888887666544544221 2223344444333321 2233321 11112556677788
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005476 476 VEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 476 ~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
+.+|.+.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.|++-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776 3344 567777777778888888888888888888888887788877777888888888888888776
Q ss_pred hCC
Q 005476 554 EQG 556 (695)
Q Consensus 554 ~~~ 556 (695)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 644
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.00029 Score=71.92 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=86.0
Q ss_pred CCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHH
Q 005476 49 HLNPTISENLLEAAAILIPATTMDYALSIFHKINE--P-DSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFA 125 (695)
Q Consensus 49 ~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 125 (695)
+-|...|+.||.-+. . ...++++..++++.. | ....|..-|..-....+++....+|.+.+..-. +...|.
T Consensus 17 P~di~sw~~lire~q-t---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ-T---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHc-c---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHH
Confidence 457888999997765 3 578999999998863 3 455799999999999999999999999887533 445555
Q ss_pred HHHHHHhcc-CChHHH----HHHHHHH-HHhCCCCC-ccHHHHHHHHH---------HhcCChhHHHHHHhccCC
Q 005476 126 CTLKACSRI-RALEEG----EQIHAQI-LKSGFGCR-QLVTNTLIHLY---------ANCGRIDIARKMFDRMSN 184 (695)
Q Consensus 126 ~ll~~~~~~-~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~Li~~y---------~~~g~~~~A~~~f~~m~~ 184 (695)
.-|.-..+. ++.... .+.|+.. .+.|+++- ...|+..+..+ ....+++..+++++++..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 555433322 233332 2333333 34455443 34566666554 334567788888888764
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=8.8e-05 Score=71.24 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=164.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHH-HHHHHHhccC
Q 005476 262 AVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMI---SGYSQARRCKEALGVFHDMQMANVVPNEVTMV-SVLSCCAVLG 337 (695)
Q Consensus 262 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~a~~~~~ 337 (695)
.|...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.-|.+.++. +||-..-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444455556666666666666555555554443 3455666666666666655543 45533211 1112345566
Q ss_pred ChhHHHHHHHHHHHhCCCCch--H------------HHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 005476 338 ALETGKWVHLYVKKKRMELTI--T------------LGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLA 400 (695)
Q Consensus 338 ~~~~a~~i~~~~~~~~~~~~~--~------------~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 400 (695)
.++.|..=|+.+++....... . .....+..+.-.|+...|+.....+.+ -|...+..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 666666666666554321110 0 111122233445666777766666543 25555666666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhH----HHHH---------
Q 005476 401 SNGQGERALETYYIMREKNIEPND-VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEH----YGCM--------- 466 (695)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l--------- 466 (695)
..|++..|+.=++..-+ +.-|. .++.-+-..+...|+.+.++....+.. .+.||... |..|
T Consensus 201 ~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred hcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 77777777766655544 33332 344455555666677766666655554 45555322 2211
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCH-----hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcC
Q 005476 467 VDILGRAGLVEEAYQFIKNM-PIPPNP-----VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAG 540 (695)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (695)
+....+.++|.++++-.++. ...|.. ..+..+-..++..+++.+|++...+++..+|+|..++..-+.+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 11233456666666555543 334431 223344455677788888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhCC
Q 005476 541 RCEDALRVMNQMREQG 556 (695)
Q Consensus 541 ~~~~a~~~~~~m~~~~ 556 (695)
.+++|+.-|+...+.+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8888888888876643
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=7.6e-07 Score=88.13 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=114.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChh---HHHHHHHHHhhc
Q 005476 397 QCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRME---HYGCMVDILGRA 473 (695)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~ 473 (695)
..+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+..+.-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCc
Confidence 3455679999999988642 3455666778889999999999999999963 344432 233334444334
Q ss_pred CCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCH-HHHHHHHH
Q 005476 474 GLVEEAYQFIKNM--PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRC-EDALRVMN 550 (695)
Q Consensus 474 g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 550 (695)
..+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 5799999999998 34567888899999999999999999999999999999999999999999999998 66778888
Q ss_pred HHHhC
Q 005476 551 QMREQ 555 (695)
Q Consensus 551 ~m~~~ 555 (695)
+++..
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 87763
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.57 E-value=6.9e-05 Score=81.58 Aligned_cols=441 Identities=13% Similarity=0.074 Sum_probs=223.0
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCCccHHHHHHHHH
Q 005476 88 AYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSG-FGCRQLVTNTLIHLY 166 (695)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y 166 (695)
.|..|...|....+...|...|....+.+. -|......+.+.++...+++.|..+.-..-+.. ...-..-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 455555555555555556666665555321 144455555566666666666655521111100 000111222233334
Q ss_pred HhcCChhHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHH--HHhccCChhHH
Q 005476 167 ANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLM--ACGRLADIELG 241 (695)
Q Consensus 167 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--a~~~~~~~~~a 241 (695)
.+.++...|..-|+.... .|...|..+..+|...|++..|+++|.+... +.|+.. |..... .-+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHHH
Confidence 455556666655654433 3556677777777777777777777777654 344332 222111 12345666666
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHh-------cCCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHhcCC
Q 005476 242 GWISEYMEEKELNGNVKLMTAVVDMYAK-------CGHVDKARRLFEQMNI-----------KDVVAWSAMISGYSQARR 303 (695)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~ 303 (695)
...++.++..- ..-....+.|...+.+ .|-..+|..+|+.-.+ .+...|-.+.
T Consensus 650 ld~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-------- 720 (1238)
T KOG1127|consen 650 LDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-------- 720 (1238)
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------
Confidence 66666655431 1111112222222222 2223333333332211 1112222221
Q ss_pred HHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCCh---h---HHHHHHHHHHHhCCCCchHHHhHHhcchhh----cC-
Q 005476 304 CKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGAL---E---TGKWVHLYVKKKRMELTITLGTALMDFYAK----CG- 372 (695)
Q Consensus 304 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g- 372 (695)
.|..+|.... .. .|+......+..-....+.. + .|-+.+ .....+..+...|.-|+.-|.+ +|
T Consensus 721 --dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 721 --DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred --HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 2233333322 11 22222222222212223322 1 011111 1111112223333333333322 22
Q ss_pred ---CHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHH
Q 005476 373 ---LIENAVEVFKKMP---LKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP-NDVAFIAVLSACSHVGMVDEGRE 445 (695)
Q Consensus 373 ---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 445 (695)
+...|...+.... ..+...||+|.-. ...|.+.-|.-.|-+-+. ..| +..+|..+.-.|....+++.|..
T Consensus 795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhH
Confidence 2234555555443 3577788877655 556777777777766655 344 44588888778888889999999
Q ss_pred HHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCChhHHHH----
Q 005476 446 LFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-------PIPPNPVIWRTLLAACRAHKNVKVGEE---- 513 (695)
Q Consensus 446 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~a~~~~g~~~~a~~---- 513 (695)
.|.... .+.| +...|-...-.....|+.-++..+|..- +..|+...|-.-..-...+|+.+.-+.
T Consensus 872 af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 872 AFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred HHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 988775 4555 4555655555556678777777777652 334566666555555566666554433
Q ss_pred ------HHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005476 514 ------SLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 514 ------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
..++.+.-.|+...+|...+......+.+++|..+..+..
T Consensus 949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444455568888888888888888888888877766653
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.7e-05 Score=76.16 Aligned_cols=412 Identities=14% Similarity=0.104 Sum_probs=214.6
Q ss_pred CCHHHHHHHhccC---CCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCChHHHHHHH
Q 005476 69 TTMDYALSIFHKI---NEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDR-FTFACTLKACSRIRALEEGEQIH 144 (695)
Q Consensus 69 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 144 (695)
|++++|...|-.. .++|.+.|..-..+|+..|++++|++=-.+-++ +.|+- -.|+-.-.++...|++++|..-|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 8999999998654 346777888888899999999998877666665 55653 46788888888889999999988
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHhcCChhHH-HHHHhccCCCCeehHHHH-----HHHHHhCCChhHHHHHHHHHHH-cC
Q 005476 145 AQILKSGFGCRQLVTNTLIHLYANCGRIDIA-RKMFDRMSNRDVFSWNSM-----FSGYVKTECWREIVDLFNEMRD-LG 217 (695)
Q Consensus 145 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~m~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~-~g 217 (695)
..-++.. +.+...++-|.+++. .+.+ ...|. +...|..+ .+++...-.+..-++.++.-.. .+
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 8877764 556677777777771 1111 11111 11111111 1111111111111111111000 00
Q ss_pred CCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhC-------CCC----------------------chHHHHHHHHHHH
Q 005476 218 VKFDEVTLINVLMACGRLADIELGGWISEYMEEKE-------LNG----------------------NVKLMTAVVDMYA 268 (695)
Q Consensus 218 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-------~~~----------------------~~~~~~~li~~~~ 268 (695)
...+ ...++.+.......+.. .....| ..| -..-...+.++..
T Consensus 164 ~~l~---d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 164 LYLN---DPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred cccc---cHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 0000 00011111100000000 000000 000 0011222333333
Q ss_pred hcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 005476 269 KCGHVDKARRLFEQMNI--KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVH 346 (695)
Q Consensus 269 ~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 346 (695)
+..+++.|.+-++...+ .++.-++....+|...|.+.+....-.+..+.|-. ...-|+.+
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klI----------------- 297 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLI----------------- 297 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHH-----------------
Confidence 33444444444433321 12222333333444444444443333332222200 00001110
Q ss_pred HHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-
Q 005476 347 LYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV- 425 (695)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~- 425 (695)
......+...|.+.++.+.|...|.+...+... -....+....++++...+...- +.|+..
T Consensus 298 -----------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~ 359 (539)
T KOG0548|consen 298 -----------AKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAE 359 (539)
T ss_pred -----------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHH
Confidence 011122445777778888888888774321110 1122233445556555555444 455543
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHH
Q 005476 426 AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACR 503 (695)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~ 503 (695)
-.-.-...+.+.|++..|...|.++++. .+-|...|....-+|.+.|.+..|++=.+.. ...|+ ...|.-=..++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 1222255677889999999999998763 3446788999999999999999888766554 33443 333444445566
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 005476 504 AHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYAS 538 (695)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (695)
...+++.|.+.|.+.++.+|++......+.+++..
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 66789999999999999999887666666555544
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00022 Score=84.41 Aligned_cols=321 Identities=10% Similarity=-0.006 Sum_probs=183.3
Q ss_pred HHhcCChhHHHHHHhccCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcC--C----CCCHhH--HHHHHHHHh
Q 005476 166 YANCGRIDIARKMFDRMSN----RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLG--V----KFDEVT--LINVLMACG 233 (695)
Q Consensus 166 y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~pd~~t--~~~ll~a~~ 233 (695)
....|+++.+...++.++. .+..........+...|++++|...+......- . .|.... ...+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445677777777766642 222222333444556778888877777664321 0 111111 112223345
Q ss_pred ccCChhHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhHHHHHHHHHHh
Q 005476 234 RLADIELGGWISEYMEEKELNGN----VKLMTAVVDMYAKCGHVDKARRLFEQMNI-------KD--VVAWSAMISGYSQ 300 (695)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~ 300 (695)
..|+++.+...++...+.--..+ ....+.+...+...|++++|...+++... .. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67788888887777665311111 12445566667778888888877776542 11 2244455666777
Q ss_pred cCCHHHHHHHHHHhHHC----CCC--C-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhC--CCC--chHHHhHHhcchh
Q 005476 301 ARRCKEALGVFHDMQMA----NVV--P-NEVTMVSVLSCCAVLGALETGKWVHLYVKKKR--MEL--TITLGTALMDFYA 369 (695)
Q Consensus 301 ~g~~~~A~~~~~~m~~~----g~~--p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~~--~~~~~~~li~~y~ 369 (695)
.|++++|...+++.... +.. + ....+..+...+...|+++.|...+....... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888877765432 211 1 12233344445566788888887777665421 111 2334444566777
Q ss_pred hcCCHHHHHHHHhcCCC----C-ChhHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhc
Q 005476 370 KCGLIENAVEVFKKMPL----K-NVFFWT-----VLIQCLASNGQGERALETYYIMREKNIEPNDV---AFIAVLSACSH 436 (695)
Q Consensus 370 ~~g~~~~A~~~~~~~~~----~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~ 436 (695)
..|+.+.|.+.+++... . ....|. ..+..+...|+.+.|.+++.+........... .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 78888888777766521 1 111111 12234455788888888876654321111111 13455666777
Q ss_pred cccHHHHHHHHHHchhh---cCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 437 VGMVDEGRELFVSMSRD---FDLEPR-MEHYGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 437 ~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
.|+.++|...++..... .+..++ ..+...+..+|.+.|+.++|.+.+.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888776542 233332 345667778888899988888888775
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=6.8e-06 Score=91.97 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=165.0
Q ss_pred CCchHHHhHHhcchhhcCCHHHHHHHHhcCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005476 355 ELTITLGTALMDFYAKCGLIENAVEVFKKMPLK--------NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVA 426 (695)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (695)
+.+...|-..+......++++.|++++++.... -...|-+++..-...|.-+...++|+++.+ ..--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 344556666777777888888888888876531 345788888888888888899999999988 3333447
Q ss_pred HHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhhHHHHHHHH
Q 005476 427 FIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP---NPVIWRTLLAAC 502 (695)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~a~ 502 (695)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999766 66788999999999999999999999875 2223 344445555666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 005476 503 RAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIK 558 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 558 (695)
.++|+.+++..+|+..+...|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999988764
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=6.7e-06 Score=79.98 Aligned_cols=178 Identities=11% Similarity=-0.005 Sum_probs=102.4
Q ss_pred hHHHhHHhcchhhcCCHHHHHHHHhcCCC--C-Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 005476 358 ITLGTALMDFYAKCGLIENAVEVFKKMPL--K-NV---FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV----AF 427 (695)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 427 (695)
...+..+...|.+.|++++|...|+++.. | +. ..|..+..+|.+.|++++|+..|+++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 34444555556666666666666665433 1 11 2445555566666666666666666655 233211 23
Q ss_pred HHHHHHHhcc--------ccHHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHH
Q 005476 428 IAVLSACSHV--------GMVDEGRELFVSMSRDFDLEPRM-EHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTL 498 (695)
Q Consensus 428 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 498 (695)
..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3333333332 4555666666655432 2221 111111100 0000000 0011244
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 499 LAACRAHKNVKVGEESLKNLVTLEPMH---SGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 499 l~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556888999999999999999987765 468889999999999999999999988764
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.0017 Score=69.48 Aligned_cols=201 Identities=10% Similarity=0.103 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 005476 322 NEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLAS 401 (695)
Q Consensus 322 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 401 (695)
|...|.-....+...|+++.|..+|..+.. |-+++...+-.|+.++|-++-++- .|......+...|-.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYEN 979 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhh
Confidence 334455555556677888888887776654 346777777788888888877663 455555667777888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------------ccHHHHHHHHHHchhhcCCCCChhHHHHH
Q 005476 402 NGQGERALETYYIMREKNIEPNDVAFIAVLSACSHV---------------GMVDEGRELFVSMSRDFDLEPRMEHYGCM 466 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 466 (695)
.|++.+|...|-+.+. |...|+.|-.. .+.-.|-++|++. |.. ...-
T Consensus 980 ~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~A 1041 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKA 1041 (1416)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHH
Confidence 8888888888876543 33334333332 2333444455443 111 1223
Q ss_pred HHHHhhcCCHHHHHHHHHhC-----------CCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc------------
Q 005476 467 VDILGRAGLVEEAYQFIKNM-----------PIP--PNPVIWRTLLAACRAHKNVKVGEESLKNLVTL------------ 521 (695)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~m-----------~~~--p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~------------ 521 (695)
+.+|-++|.+.+|+++-=+- .+. .|+...+--..-+..+.++++|..++-...+.
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55677888888877653211 122 24444444444455666777776655443221
Q ss_pred ----------CCCC---------cccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 522 ----------EPMH---------SGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 522 ----------~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
-|.. ......++..|.++|.+..|.+-|..
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 1211 12466889999999988887765543
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=1.7e-07 Score=58.96 Aligned_cols=33 Identities=39% Similarity=0.566 Sum_probs=26.1
Q ss_pred CCCCCccHHHHHHHHHHhcCChhHHHHHHhccC
Q 005476 151 GFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS 183 (695)
Q Consensus 151 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 183 (695)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.1e-05 Score=75.32 Aligned_cols=147 Identities=8% Similarity=0.073 Sum_probs=111.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 005476 396 IQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGL 475 (695)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 475 (695)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3467788887776544432221 11 012235666777777777664 334578889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHhcCC--hhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 005476 476 VEEAYQFIKNM-PIPP-NPVIWRTLLAA-CRAHKN--VKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMN 550 (695)
Q Consensus 476 ~~~A~~~~~~m-~~~p-~~~~~~~ll~a-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (695)
+++|...+++. ...| +...+..+..+ +...|+ .++|.++++++++.+|++..++..++..+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999886 4455 56677777776 467677 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 005476 551 QMREQG 556 (695)
Q Consensus 551 ~m~~~~ 556 (695)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998754
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.7e-07 Score=58.05 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=28.0
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 005476 251 KELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMN 284 (695)
Q Consensus 251 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 284 (695)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.45 E-value=0.00035 Score=72.76 Aligned_cols=20 Identities=20% Similarity=-0.026 Sum_probs=14.1
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 005476 502 CRAHKNVKVGEESLKNLVTL 521 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~ 521 (695)
+...|+.+.|.+.+..++.+
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777777654
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=4.1e-05 Score=71.98 Aligned_cols=311 Identities=17% Similarity=0.124 Sum_probs=175.3
Q ss_pred CCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHH-
Q 005476 217 GVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK--DVVAWSA- 293 (695)
Q Consensus 217 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~- 293 (695)
|+....--+.+++....+..++..+.+++..-.+.. +.+....+.|..+|....++..|-..++++... ...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 333344446666666666777777777776665553 235566677777788888888888888777542 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHH--HhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhc
Q 005476 294 MISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSC--CAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKC 371 (695)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a--~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 371 (695)
-..++-+.+.+.+|+++...|... |+...-..-+.+ ....+++..++.+.++.-.. .+..+.+-..-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecc
Confidence 134455677777777777776542 222221111221 12344555555544443221 2223333333344556
Q ss_pred CCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 005476 372 GLIENAVEVFKKMPL----KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELF 447 (695)
Q Consensus 372 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (695)
|+.+.|.+-|+...+ .....||.-+. ..+.|+++.|+++..+++++|++--+.. + .|..-++..+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDv- 226 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDV- 226 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCch-
Confidence 666666666665543 23344544333 2344566666666666666654321110 0 0000000000
Q ss_pred HHchhhcCCCCChhHHHHH-------HHHHhhcCCHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 005476 448 VSMSRDFDLEPRMEHYGCM-------VDILGRAGLVEEAYQFIKNMPI----PPNPVIWRTLLAACRAHKNVKVGEESLK 516 (695)
Q Consensus 448 ~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 516 (695)
+.-| .|-.-+-+.+ ...+.+.|+++.|.+.+..||- +.|++|...+.-. -..+++..+.+-+.
T Consensus 227 ----rsvg-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 227 ----RSVG-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQ 300 (459)
T ss_pred ----hccc-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHH
Confidence 0000 0111122233 3446788999999999999952 3477777654322 23567788888889
Q ss_pred HHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 517 NLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 517 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
-+++++|-...+|..++-+|++..-++-|..++-+
T Consensus 301 FLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 301 FLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 99999998889999999999999999988887754
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=9.4e-06 Score=85.45 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=121.5
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 005476 253 LNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSC 332 (695)
Q Consensus 253 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 332 (695)
++|-...-..+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+. +||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3455556666777777777777777777764 45666777777777777777777666652 5666665555444
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005476 333 CAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETY 412 (695)
Q Consensus 333 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (695)
..+ ..-+++|.++++....+-...|+.. ...+++++++.+.|
T Consensus 467 ~~d-----------------------------------~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 467 LHD-----------------------------------PSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHL 508 (777)
T ss_pred ccC-----------------------------------hHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHH
Confidence 333 2334444444444322211111111 12256677777777
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-
Q 005476 413 YIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PI- 488 (695)
Q Consensus 413 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~- 488 (695)
+.-.+ +.|-.. ||-.+..+..+.++++.|.+.|...+ .+.| +...||.+-.+|.+.|+..+|...+++. ..
T Consensus 509 e~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 509 ERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 76555 444333 66666666666677777776666554 2333 2445555555555555555555555554 11
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005476 489 PPNPVIWRTLLAACRAHKNVKVGEESLKNLVTL 521 (695)
Q Consensus 489 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 521 (695)
.-+-..|...+-...+-|.++.|++++.++..+
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 112334545555555555555555555555543
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.42 E-value=6.3e-06 Score=72.78 Aligned_cols=121 Identities=8% Similarity=-0.003 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 005476 410 ETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-P 487 (695)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 487 (695)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45554 33445566677777777777777653 333 5666777777777777777777777765 3
Q ss_pred CCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 005476 488 IPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYA 537 (695)
Q Consensus 488 ~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (695)
..| +...|..+..++...|++++|+..+++++++.|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334 55667777777777778888888888887777777776666555543
No 114
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=5.4e-05 Score=76.03 Aligned_cols=178 Identities=12% Similarity=0.104 Sum_probs=117.3
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 005476 373 LIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQG--ERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGREL 446 (695)
Q Consensus 373 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 446 (695)
.+++++..++++.. ++...|+.....+.+.|+. ++++++++++.+ ..|. ..+|.....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34556665555432 3445566554445555542 567777777777 5554 44777777777777888888888
Q ss_pred HHHchhhcCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHHh-CCCCC-CHhhHHHHHHHHHhc----CChhHHHH
Q 005476 447 FVSMSRDFDLEPRMEHYGCMVDILGRA---GLV----EEAYQFIKN-MPIPP-NPVIWRTLLAACRAH----KNVKVGEE 513 (695)
Q Consensus 447 ~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~----g~~~~a~~ 513 (695)
++++++. -..+...|+.....+.+. |.. +++.++..+ +...| |...|+-+...+... ++..+|..
T Consensus 165 ~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 8888753 223455555555555443 222 456666644 34455 678899888888773 44567889
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHHcC------------------CHHHHHHHHHHHHh
Q 005476 514 SLKNLVTLEPMHSGDYILLSDIYASAG------------------RCEDALRVMNQMRE 554 (695)
Q Consensus 514 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~~ 554 (695)
.+.+++..+|.++.+...|+++|+... ..++|.++++.+.+
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 999998889998888899999998643 34678888888743
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=8.8e-06 Score=70.59 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 005476 459 RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIY 536 (695)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (695)
+....-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..+.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555666777888999999999999987 3455 5778899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005476 537 ASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 537 ~~~g~~~~a~~~~~~m~~~ 555 (695)
...|+.+.|.+.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988763
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=5.3e-06 Score=73.25 Aligned_cols=99 Identities=10% Similarity=-0.052 Sum_probs=88.1
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHH
Q 005476 456 LEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLS 533 (695)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (695)
+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3454 3556788899999999999999986 4445 6788999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 005476 534 DIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
.++...|+.++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999988754
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.33 E-value=0.0017 Score=62.74 Aligned_cols=330 Identities=14% Similarity=0.071 Sum_probs=192.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHH---HHHhccCChhHHHHHHHHHHHhCCCCchHH-HHHHHHH
Q 005476 191 NSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVL---MACGRLADIELGGWISEYMEEKELNGNVKL-MTAVVDM 266 (695)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~ 266 (695)
--+...+...|++..|+.-|....+. |+..|.++. ..|...|.-..|..-+..+++. .||-.. ...-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 34556666777777777777776552 233333333 3455566666666666666554 444221 1122334
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 005476 267 YAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVH 346 (695)
Q Consensus 267 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 346 (695)
+.+.|.++.|..-|+.+.+.+.. +|...+|..-+.... ........+......|+...+....
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHH
Confidence 56677777777777666433210 000111110000000 0011122233344456666666666
Q ss_pred HHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005476 347 LYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKM---PLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN 423 (695)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (695)
..+++.. +.|...+..-..+|...|++..|..-++.. ...+....--+-..+...|+.+.++...++-.+ +.||
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 6666543 556667777777788888888777655544 334556666666677778888888888777776 7777
Q ss_pred HH-HHH---HH---H------HHHhccccHHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 005476 424 DV-AFI---AV---L------SACSHVGMVDEGRELFVSMSRDFDLEPR-----MEHYGCMVDILGRAGLVEEAYQFIKN 485 (695)
Q Consensus 424 ~~-t~~---~l---l------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (695)
.. .|. .| . ......+.+.++.+..+...+ ..|. ...+..+-..+...|++.+|+....+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 64 221 11 0 112334556666666666553 2343 22344455667778999999988877
Q ss_pred C-CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 005476 486 M-PIPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKK 559 (695)
Q Consensus 486 m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 559 (695)
. .+.|| +.++.--..+|.....++.|+.-|+++.+.++++..+-. | .+.|.++.+...+++.-+
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re---------G-le~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE---------G-LERAKRLKKQSGKRDYYK 398 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH---------H-HHHHHHHHHHhccchHHH
Confidence 5 56665 777877788899999999999999999999998754322 2 356666666555554433
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=1.7e-05 Score=81.57 Aligned_cols=214 Identities=14% Similarity=0.145 Sum_probs=156.6
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 005476 233 GRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALG 309 (695)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 309 (695)
.+.|++..|.-.|+..++.. +.+...|.-|...-...++-..|+..+.+..+ .|..+.-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677888888888887774 45777888888888888887778877777643 366778888888999999999999
Q ss_pred HHHHhHHCCCC--------CCHHHHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCchHHHhHHhcchhhcCCHHHHHHH
Q 005476 310 VFHDMQMANVV--------PNEVTMVSVLSCCAVLGALETGKWVHLYVKK-KRMELTITLGTALMDFYAKCGLIENAVEV 380 (695)
Q Consensus 310 ~~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 380 (695)
.|++.+....+ ++..+-.. ........+....++|-.+.. .+...|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888654310 00000000 111112223344445544444 55568888888898899999999999999
Q ss_pred HhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHch
Q 005476 381 FKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMS 451 (695)
Q Consensus 381 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 451 (695)
|+.... .|...||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|.+.|-.++
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 998754 3778899999999999999999999999999 899977 55556668999999999998886654
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=2.2e-05 Score=82.69 Aligned_cols=189 Identities=18% Similarity=0.228 Sum_probs=140.6
Q ss_pred CCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005476 353 RMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLS 432 (695)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (695)
+++|--..-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|.++..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566677888899999999999999885 4688889999999999999999888877 6889999999998
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhH
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKV 510 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 510 (695)
.......+++|.++++..... .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888888999888766432 1111222233467777777777653 3344 45567777666777777777
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 511 GEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
|.+.|.+.+.++|++...|+.++.+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777776654
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00013 Score=82.06 Aligned_cols=227 Identities=12% Similarity=0.148 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHh-CCC---CchHHHhHHhcchhhcCCHHHHHHHHhcCCCC-C-hhHHHHHHH
Q 005476 324 VTMVSVLSCCAVLGALETGKWVHLYVKKK-RME---LTITLGTALMDFYAKCGLIENAVEVFKKMPLK-N-VFFWTVLIQ 397 (695)
Q Consensus 324 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 397 (695)
..|..-|....+.++.+.|+.+.+++.+. ++. --..+|.+++++-..-|.-+...++|++..+- | ...|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34555555556667777777777666652 111 12345666666666667777777888777652 3 355777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHH
Q 005476 398 CLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVE 477 (695)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 477 (695)
.|.+.+.+++|.++|+.|.+. +.-....|...+....+...-+.|..++.++.+...-.-......-.+++-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 888888888888888888774 3444457777777888888888888888877652111113555666677777888888
Q ss_pred HHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcc-cHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 478 EAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLE--PMHSG-DYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 478 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
.+..+|+.. .-.| -...|+.++..-.++|+.+.++.+|++++.+. |.... .|-.++..--..|+-+.+..+-.+
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 888888876 2222 45678888888888888888888888888865 33322 222333333334544444444333
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=5.9e-05 Score=70.51 Aligned_cols=152 Identities=11% Similarity=0.079 Sum_probs=110.3
Q ss_pred hcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHH
Q 005476 365 MDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEG 443 (695)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 443 (695)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+ ..|+ ...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777766554443322211 012235667788888888777 4554 45888888889999999999
Q ss_pred HHHHHHchhhcCCCC-ChhHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHH
Q 005476 444 RELFVSMSRDFDLEP-RMEHYGCMVDI-LGRAGL--VEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKN 517 (695)
Q Consensus 444 ~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~ 517 (695)
...|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998864 445 67778888886 467777 58999999887 4455 567888888889999999999999999
Q ss_pred HHhcCCCCcccH
Q 005476 518 LVTLEPMHSGDY 529 (695)
Q Consensus 518 ~~~~~p~~~~~~ 529 (695)
+++++|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998776443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=9.3e-05 Score=69.03 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHH
Q 005476 420 IEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM--PIPPNPVIWRT 497 (695)
Q Consensus 420 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 497 (695)
..|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...+++. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 455444335556667777877777777766542 33446666777888999999999999999887 34568889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 498 LLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 498 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
+.-+|.+.|+++.|...+.+++++.|.++..+..|+-.|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988776543
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.22 E-value=4.8e-05 Score=73.98 Aligned_cols=182 Identities=11% Similarity=-0.021 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC--chHHHhHHhcchhhcCCHHHHHHHHhcCCC--C-Chh---HH
Q 005476 321 PNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMEL--TITLGTALMDFYAKCGLIENAVEVFKKMPL--K-NVF---FW 392 (695)
Q Consensus 321 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~ 392 (695)
.....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...|+++.. | +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777788899999999999999988865321 124667788999999999999999998854 2 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHH
Q 005476 393 TVLIQCLASN--------GQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHY 463 (695)
Q Consensus 393 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 463 (695)
..+..++.+. |+.++|.+.|+++.. ..|+.. ....+... . .... .. . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~-~---~~~~------~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRM-D---YLRN------RL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHH-H---HHHH------HH-H--------HHH
Confidence 5555666654 788999999999988 466653 22221111 0 0100 00 0 112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005476 464 GCMVDILGRAGLVEEAYQFIKNM----PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEP 523 (695)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 523 (695)
..+.+.|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788999999999988876 2233 356788899999999999999998888776555
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=6.7e-05 Score=83.09 Aligned_cols=138 Identities=11% Similarity=0.074 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHH
Q 005476 388 NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGC 465 (695)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 465 (695)
++..+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+.+++|....++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 567778888888999999999999999998 889877 777788889999999999999998874 345 5677888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHH
Q 005476 466 MVDILGRAGLVEEAYQFIKNMP-IPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYI 530 (695)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (695)
+..++.+.|++++|.++|++.- ..| +..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8899999999999999999872 234 3678888889999999999999999999987654444444
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.022 Score=62.27 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 005476 495 WRTLLAACRAHKNV---KVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKK 559 (695)
Q Consensus 495 ~~~ll~a~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 559 (695)
-+.|+..|++.++. -+|+-+++..+...|.|...-..|+.+|.-.|-...|.++++.+.-+.|..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 45677788888764 466677777777888887777788899998899999999988886655544
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.1e-06 Score=53.52 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005476 390 FFWTVLIQCLASNGQGERALETYYIMREKNIEPN 423 (695)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (695)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.8e-06 Score=53.20 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=32.6
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 005476 188 FSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDE 222 (695)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 222 (695)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.00037 Score=77.35 Aligned_cols=143 Identities=10% Similarity=0.075 Sum_probs=114.5
Q ss_pred CCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 005476 353 RMELTITLGTALMDFYAKCGLIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFI 428 (695)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 428 (695)
....++..+..|.......|.+++|+.+++...+ | +...+..+...+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3456688888899999999999999999998865 4 556788888999999999999999999998 678776 555
Q ss_pred HHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHH
Q 005476 429 AVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM--PIPPNPVIWRTLL 499 (695)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 499 (695)
.+..++.+.|.+++|..+|+++.. ...-+...+..+...+-..|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 666778889999999999999975 22334778889999999999999999999886 2234455555444
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=4.8e-05 Score=66.63 Aligned_cols=101 Identities=21% Similarity=0.325 Sum_probs=80.2
Q ss_pred CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHH
Q 005476 456 LEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILL 532 (695)
Q Consensus 456 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (695)
..| +......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3455666777788888888888888776 3334 567777888888888999999999999989999888888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 533 SDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
+.+|...|++++|...++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999998877643
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.06 E-value=0.00049 Score=77.10 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYA 537 (695)
Q Consensus 493 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (695)
.+|-.+-.-|...++++.+..+++.+++.+|.|..+...++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344444455555566666666666666666666555555555554
No 131
>PLN02789 farnesyltranstransferase
Probab=98.06 E-value=0.00028 Score=70.92 Aligned_cols=183 Identities=11% Similarity=0.101 Sum_probs=130.6
Q ss_pred hhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcccc--H
Q 005476 368 YAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNG-QGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGM--V 440 (695)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~--~ 440 (695)
+.+.++.++|..+.+.+.. .+..+|+.--..+...| ++++++..++++.+ ..|+.. +|..-...+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCchhh
Confidence 4445677788887777654 24456776666667777 57999999999998 455543 56655445555565 3
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhc---CCh----hHH
Q 005476 441 DEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAH---KNV----KVG 511 (695)
Q Consensus 441 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~----~~a 511 (695)
+++..+++.+.+ .-+.+...|+...-++.+.|++++|++.++++ ...| |...|+.....+.+. |.. +.+
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 677888888874 22346788888888899999999999999987 3333 677888777666554 222 467
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 005476 512 EESLKNLVTLEPMHSGDYILLSDIYASA----GRCEDALRVMNQMRE 554 (695)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 554 (695)
.....++++.+|+|.++|..+..+|... ++..+|.+...+..+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7888899999999999999999999873 344566666665443
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00035 Score=65.29 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=93.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 005476 395 LIQCLASNGQGERALETYYIMREKNIEP-NDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRA 473 (695)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 473 (695)
+-..+...|+.+....+..+... ..| |.......+....+.|++.+|...|.+... .-++|...|+.+.-.|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 34455556666665555555333 222 222333455666666777777777766653 4455666777777777777
Q ss_pred CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 005476 474 GLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMN 550 (695)
Q Consensus 474 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (695)
|++++|..-|.+. .+.| +....+.|.-.+.-.|+.+.|+.++.......+.++.+-..|.-+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777776665554 3333 345566666667777777777777777776666666666677777777777777766543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.00043 Score=70.26 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChhHHHH
Q 005476 436 HVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVKVGEE 513 (695)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~ 513 (695)
..|.+++|+..+..+.+ ..+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-++..++.+.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34555555555555543 22233444445555555555555555555554 33443 3344455555555555555555
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 005476 514 SLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 514 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 552 (695)
+++..+..+|+|+..|..|+.+|...|+..++...+.++
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 555555555555555555555555555555555544444
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0026 Score=59.56 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=94.8
Q ss_pred HHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005476 344 WVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN 423 (695)
Q Consensus 344 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (695)
.+.+.+.......+......-...|...|++++|.+.......-+....| +..+.+..+.+-|.+.+++|.+ + -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--i-de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--I-DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--c-ch
Confidence 34444444444444333344445677778888888777763322222222 3344566677777777777776 2 24
Q ss_pred HHHHHHHHHHHhc----cccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHH
Q 005476 424 DVAFIAVLSACSH----VGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM--PIPPNPVIWRT 497 (695)
Q Consensus 424 ~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 497 (695)
..|.+.|..++.+ .+.+..|.-+|++|.. +..|+..+.+.+..+....|++++|..++++. ....++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4456555555443 3456667777777754 35566666666666666666666666666654 11223444433
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhcCCCC
Q 005476 498 LLAACRAHK-NVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 498 ll~a~~~~g-~~~~a~~~~~~~~~~~p~~ 525 (695)
++-.-...| +.+--.+...++....|..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 333333333 3334445555555555544
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.03 Score=57.83 Aligned_cols=428 Identities=12% Similarity=0.099 Sum_probs=243.3
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC--CCeehHHHHHHHH
Q 005476 120 DRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN--RDVFSWNSMFSGY 197 (695)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~ 197 (695)
|..+|..|++-+... ..+++++.++++... ++.....|..-|..-.+..+++..+++|.+... -++..|..-|+.-
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 778899999877665 899999999999875 466778888889999999999999999988654 4677888777644
Q ss_pred Hh-CCChh----HHHHHHHHH-HHcCCCCCHhH----HHHHHHHHhccCCh------hHHHHHHHHHHHhCCCCchHHHH
Q 005476 198 VK-TECWR----EIVDLFNEM-RDLGVKFDEVT----LINVLMACGRLADI------ELGGWISEYMEEKELNGNVKLMT 261 (695)
Q Consensus 198 ~~-~g~~~----~A~~~~~~m-~~~g~~pd~~t----~~~ll~a~~~~~~~------~~a~~~~~~~~~~g~~~~~~~~~ 261 (695)
-+ +|+.. ...+.|+-. .+.|+.+-... |...+..--..|.+ +..+++++.++..-+..=...|+
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 33 23332 233334333 34565554433 33344433333443 34455555555433222233343
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHHhcCC------CChh---------------HHHHHHHHHHhcCCH---
Q 005476 262 AVVDMY-------------AKCGHVDKARRLFEQMNI------KDVV---------------AWSAMISGYSQARRC--- 304 (695)
Q Consensus 262 ~li~~~-------------~~~g~~~~A~~~f~~m~~------~~~~---------------~~~~li~~~~~~g~~--- 304 (695)
-....- -+...+..|+++++++.. ++.. .|-.+|.-=..++.-
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 221110 011234445555554421 1111 133333321111110
Q ss_pred -----HHHHHHHH-HhHHCCCCCCHHH-HHHHH----HHHhccCC-------hhHHHHHHHHHHHhCCCCchHHHhHHhc
Q 005476 305 -----KEALGVFH-DMQMANVVPNEVT-MVSVL----SCCAVLGA-------LETGKWVHLYVKKKRMELTITLGTALMD 366 (695)
Q Consensus 305 -----~~A~~~~~-~m~~~g~~pd~~t-~~~ll----~a~~~~~~-------~~~a~~i~~~~~~~~~~~~~~~~~~li~ 366 (695)
....=.++ -|.-.+..|+..- +..-+ +.+...|+ .+++..+++..+..-...+..+|.++.+
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~ 336 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD 336 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000111 1111223333221 11111 11222333 3344555555554433344444444433
Q ss_pred chhhcC---CHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 005476 367 FYAKCG---LIENAVEVFKKMPL----KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP-NDVAFIAVLSACSHVG 438 (695)
Q Consensus 367 ~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 438 (695)
---..- ..+.....+++... .-..+|-..+..-.+..-...|..+|.+.++.+..+ +....++++.-++ .+
T Consensus 337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-sk 415 (656)
T KOG1914|consen 337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SK 415 (656)
T ss_pred hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cC
Confidence 211111 12333333333322 223456677777777777889999999999988888 4446666665544 57
Q ss_pred cHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HhhHHHHHHHHHhcCChhHHHH
Q 005476 439 MVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM---PIPPN--PVIWRTLLAACRAHKNVKVGEE 513 (695)
Q Consensus 439 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~a~~~~g~~~~a~~ 513 (695)
+..-|.++|+.=.+.+|- ++.--.+.++-+...++-..|..+|++. .+.|| ..+|..+|.--..-||.....+
T Consensus 416 D~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred ChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 889999999987775543 3445567888999999999999999887 23343 4689999999999999999999
Q ss_pred HHHHHHhcCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHH
Q 005476 514 SLKNLVTLEPMHS----GDYILLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 514 ~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 552 (695)
+-++....-|.+. ..-..+.+.|.-.+.+..-..-++.|
T Consensus 494 lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 494 LEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9988887666221 23345666677677665555444444
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00013 Score=74.83 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=95.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 005476 426 AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACR 503 (695)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 503 (695)
-..+|+..+...+.++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666677788888888877643 244 3445677777777778888877765 2233 5556666666788
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005476 504 AHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
..++++.|+.+++++.++.|++..+|..|+.+|...|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.00069 Score=68.84 Aligned_cols=144 Identities=19% Similarity=0.137 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHH
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFI-AVLSACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVD 468 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 468 (695)
.+-...-.+.+.|++++|+..++.++. -.||..-|. .....+...++.++|.+.++.++. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333344456678999999999999988 577776555 445678899999999999999974 4666 566778899
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHH
Q 005476 469 ILGRAGLVEEAYQFIKNM--PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDAL 546 (695)
Q Consensus 469 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 546 (695)
+|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|.-.|+|++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 999999999999999886 33447889999999999999988776554 44578899999999
Q ss_pred HHHHHHHhCC
Q 005476 547 RVMNQMREQG 556 (695)
Q Consensus 547 ~~~~~m~~~~ 556 (695)
.......++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999988753
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.5e-05 Score=50.47 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005476 390 FFWTVLIQCLASNGQGERALETYYIMREKNIEP 422 (695)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 422 (695)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999998887
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.95 E-value=0.0002 Score=62.61 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=86.6
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 005476 411 TYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PI 488 (695)
Q Consensus 411 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 488 (695)
+|++... ..|+.. ....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 556543 4556667778889999999999888652 2346778888888999999999999888876 33
Q ss_pred CC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 005476 489 PP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG 527 (695)
Q Consensus 489 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (695)
.| +...|..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5667777888899999999999999999999997754
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.6e-05 Score=50.36 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=30.2
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 005476 187 VFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKF 220 (695)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 220 (695)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00022 Score=73.17 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCHHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 005476 69 TTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQIL 148 (695)
Q Consensus 69 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 148 (695)
++++.|..+|+++.+.++..+-.|+..+...++..+|++++++..+.. +-|...+..-.+.|.+.++.+.|.++..++.
T Consensus 183 ~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av 261 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAV 261 (395)
T ss_pred ccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444555555544444443344444444444444444444444444321 1123333333333444444444444444444
Q ss_pred HhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccC
Q 005476 149 KSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS 183 (695)
Q Consensus 149 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 183 (695)
+.. +.+..+|..|..+|.+.|+++.|+..++.+|
T Consensus 262 ~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 262 ELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 432 2223344444444444444444444444443
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.82 E-value=0.088 Score=57.86 Aligned_cols=181 Identities=16% Similarity=0.091 Sum_probs=113.8
Q ss_pred CCHHHHHHHhccCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005476 69 TTMDYALSIFHKIN---EPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHA 145 (695)
Q Consensus 69 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (695)
|+.++|..+++... ..|..+...+-..|...|+.++|..+|+.... .-|+......++.++.+.+++.+-.++--
T Consensus 57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~ 134 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAAL 134 (932)
T ss_pred cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777653 24666777888888888888888888888876 35667777777888888777766555555
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhcCC----------hhHHHHHHhccCCCC--eehHH---HHHHHHHhCCChhHHHHHH
Q 005476 146 QILKSGFGCRQLVTNTLIHLYANCGR----------IDIARKMFDRMSNRD--VFSWN---SMFSGYVKTECWREIVDLF 210 (695)
Q Consensus 146 ~~~~~g~~~~~~~~~~Li~~y~~~g~----------~~~A~~~f~~m~~~~--~~~~~---~li~~~~~~g~~~~A~~~~ 210 (695)
++.+. ++.+.+.+-+.++.+...-. ..-|.+.++.+.+.+ ..+-. .-...+...|++++|++++
T Consensus 135 ~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 135 QLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 55543 45666777777777665321 234555666555433 11111 1123344567788888877
Q ss_pred -HHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 005476 211 -NEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKE 252 (695)
Q Consensus 211 -~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 252 (695)
....+.-...+...-+--+..+...+++.+..++-..+...|
T Consensus 214 ~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 214 AITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 333333333344444455666667777777777777777775
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.80 E-value=0.0046 Score=69.59 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 005476 223 VTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQAR 302 (695)
Q Consensus 223 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 302 (695)
..+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|... ++++|++++.+.. ..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 355566666666677777777777777665 55777788888888877 8888887766543 2366677
Q ss_pred CHHHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhccCChhHHHHHHHHHHHh-CCCCchHHHhHHhcchhhcCCHHHHHHH
Q 005476 303 RCKEALGVFHDMQMANVVPNEV-TMVSVLSCCAVLGALETGKWVHLYVKKK-RMELTITLGTALMDFYAKCGLIENAVEV 380 (695)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~ 380 (695)
++.++.+++.++... .|+.+ .+..+++ .+... |..--+.++-.|-..|-+..+++++..+
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 888888888888765 23332 2222222 12211 2223334444555667777777777777
Q ss_pred HhcCCC---CChhHHHHHHHHHH
Q 005476 381 FKKMPL---KNVFFWTVLIQCLA 400 (695)
Q Consensus 381 ~~~~~~---~~~~~~~~li~~~~ 400 (695)
|+.+.+ .|.....-++.+|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 777654 35555566666665
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00027 Score=56.83 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcC
Q 005476 463 YGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAG 540 (695)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (695)
+..+...+.+.|++++|...+++. ...| +...|..+...+...++++.|.+.++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788888999998888875 3334 34667777888888899999999999999999888888889999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 005476 541 RCEDALRVMNQMREQ 555 (695)
Q Consensus 541 ~~~~a~~~~~~m~~~ 555 (695)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998887653
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.74 E-value=8.2e-05 Score=56.24 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=59.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 005476 491 NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAG-RCEDALRVMNQMRE 554 (695)
Q Consensus 491 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 554 (695)
++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999998765
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.049 Score=57.80 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=67.4
Q ss_pred hcchhhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005476 365 MDFYAKCGLIENAVEVFKKMPLKNV---FFWTVLIQCLA----SNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHV 437 (695)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (695)
|.++.+.|+.-+|.+++.+|.++.. +-+.-+-..|. -..+..++++-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 4566677777777777777754211 11111111111 11223344444444444444333221 1222
Q ss_pred ccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCChhHHHH
Q 005476 438 GMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM----PIPPNPVIWRTLLAACRAHKNVKVGEE 513 (695)
Q Consensus 438 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~ 513 (695)
|...++-++.+..-+ | ....|+-.|..--..-|+++.|+..--.+ .+-|-..+|..|.-+.+....+...-+
T Consensus 1003 ~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred hhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 333344444433322 1 23344555555556678888887654333 233445556555444344444555555
Q ss_pred HHHHHHhcC
Q 005476 514 SLKNLVTLE 522 (695)
Q Consensus 514 ~~~~~~~~~ 522 (695)
+|-++...+
T Consensus 1079 AfmkLe~~e 1087 (1189)
T KOG2041|consen 1079 AFMKLEAFE 1087 (1189)
T ss_pred HHHHHHhhh
Confidence 555554443
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.5e-05 Score=47.01 Aligned_cols=31 Identities=39% Similarity=0.469 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005476 390 FFWTVLIQCLASNGQGERALETYYIMREKNI 420 (695)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 420 (695)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.6e-05 Score=46.96 Aligned_cols=31 Identities=39% Similarity=0.823 Sum_probs=25.9
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 005476 188 FSWNSMFSGYVKTECWREIVDLFNEMRDLGV 218 (695)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 218 (695)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=4.9e-05 Score=60.08 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 005476 473 AGLVEEAYQFIKNM----PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRV 548 (695)
Q Consensus 473 ~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 548 (695)
.|++++|+.+++++ +..|+...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 2122445566677778888888888888888 666666666666778888888888888888
Q ss_pred HHH
Q 005476 549 MNQ 551 (695)
Q Consensus 549 ~~~ 551 (695)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.0011 Score=58.59 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=52.3
Q ss_pred cccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhcCChhH
Q 005476 437 VGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNP----VIWRTLLAACRAHKNVKV 510 (695)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~ 510 (695)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444445444555444322111 1122223344455555555555555544 111221 122234444555555555
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 511 GEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
|+..++.. .-.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555442 11222333455666666666666666666654
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.00061 Score=57.90 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cccHHHHH
Q 005476 462 HYGCMVDILGRAGLVEEAYQFIKNM-PIPPN----PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH---SGDYILLS 533 (695)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 533 (695)
++..++..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...++.++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666666666666666655 11222 2344556666777777777777777777766654 33566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 005476 534 DIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777776664
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.00073 Score=69.62 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=49.0
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHH
Q 005476 469 ILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDAL 546 (695)
Q Consensus 469 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 546 (695)
.+...|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344455555555555554 2233 34455555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHh
Q 005476 547 RVMNQMRE 554 (695)
Q Consensus 547 ~~~~~m~~ 554 (695)
..+++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 66665554
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0047 Score=57.47 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=138.0
Q ss_pred cCCHHHHHHHHhcCCC--------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccccH
Q 005476 371 CGLIENAVEVFKKMPL--------KNV-FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVL-SACSHVGMV 440 (695)
Q Consensus 371 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 440 (695)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++..+ + |.+.-...+= .-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888887742 222 23455556667789999999999998885 3 6554322221 124457899
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 005476 441 DEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM--PIPPNPVIWRTLLAACRAHKNVKVGEESLKNL 518 (695)
Q Consensus 441 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 518 (695)
++|.++++.+..+ -+.|..+|--=+-+.-..|+--+|++-+.+. .+..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999874 3456777777777777788887887766654 34568999999999999999999999999999
Q ss_pred HhcCCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHhCC
Q 005476 519 VTLEPMHSGDYILLSDIYASAG---RCEDALRVMNQMREQG 556 (695)
Q Consensus 519 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~ 556 (695)
+-..|.++-.+..+++.+...| +.+-|.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999988889999887666 4566888888877744
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.55 E-value=0.0035 Score=55.48 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC--hhHHHH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEPND----VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR--MEHYGC 465 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 465 (695)
|..++..+ ..++...+.+.++++... .|+. .....+...+...|++++|...|+.+... .-.|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 477778888888888774 3332 23334456677788888888888888764 22222 123445
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 005476 466 MVDILGRAGLVEEAYQFIKNMPIPP-NPVIWRTLLAACRAHKNVKVGEESLKNL 518 (695)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 518 (695)
|...+...|++++|+..++..+..+ ....+......+...|+.++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777888888888888887763222 3455666777788888888888888775
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0033 Score=67.69 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=75.5
Q ss_pred CCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC
Q 005476 386 LKNVFFWTVLIQCLASNG-----QGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR 459 (695)
Q Consensus 386 ~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 459 (695)
..|...|...+.+..... +...|..+|++..+ ..||.. .+..+..++... ++..|.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~ 395 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPL 395 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCc
Confidence 356677777777654322 25678888888888 678754 343332222110 011110
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHH
Q 005476 460 MEHYGCMVDILGRAGLVEEAYQFIKNM---P-IPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDI 535 (695)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~m---~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (695)
.. +++..+.+..++. + ...+...|..+.-.....|++++|...++++++++| +...|..++.+
T Consensus 396 ~~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 DE------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred cH------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 00 1112222222221 1 122344555554445556777777777777777776 35566777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCC
Q 005476 536 YASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 536 ~~~~g~~~~a~~~~~~m~~~~ 556 (695)
|...|+.++|...+++....+
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 777777777777776665543
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00022 Score=53.07 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=48.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 498 LLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 498 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778889999999999999999988888899999999999999999999888764
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.52 E-value=0.0012 Score=56.10 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=64.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHH
Q 005476 427 FIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN----PVIWRTLLA 500 (695)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 500 (695)
+..+...+...|++++|.+.|..+...+.-.+ ....+..+...+.+.|++++|.+.++++ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555566666666666666654321111 1234555667777777777777777765 22232 345667777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccc
Q 005476 501 ACRAHKNVKVGEESLKNLVTLEPMHSGD 528 (695)
Q Consensus 501 a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (695)
++...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7888888888888888888888876543
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.011 Score=55.14 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=124.8
Q ss_pred CCCchH-HHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005476 354 MELTIT-LGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLI---QCLASNGQGERALETYYIMREKNIEPNDVAFIA 429 (695)
Q Consensus 354 ~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 429 (695)
..++.. ++.-++-+...+|+.+.|...++++..+=+.++.... .-+-..|++++|+++++.+.+.. +-|.+++-.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 445543 3444555566789999999999887653222222221 23456789999999999999865 345557766
Q ss_pred HHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhc--
Q 005476 430 VLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAH-- 505 (695)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~-- 505 (695)
=+...-..|+--+|++-+....+ .+..|.+.|.-|.+.|...|++++|.--++++ -..| +...+..+...+...
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 56566667777788888777766 56789999999999999999999999999997 3345 455566666654333
Q ss_pred -CChhHHHHHHHHHHhcCCCCcccHH
Q 005476 506 -KNVKVGEESLKNLVTLEPMHSGDYI 530 (695)
Q Consensus 506 -g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (695)
.|.+.+.+.+.+.+++.|.+...+.
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 4788999999999999996544333
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.14 Score=51.44 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=81.6
Q ss_pred hcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 005476 365 MDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGR 444 (695)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 444 (695)
|.-+...|+...|.++-.+..-||-..|-..+.+|+..+++++-.++... +-.++.|-..+.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 34445667888888888888778888888888888888888776654321 223467777788888888888888
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 005476 445 ELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAAC 502 (695)
Q Consensus 445 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~ 502 (695)
.+...+. +..-+.+|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 7776531 2456778888888888877655542 555444444444
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.00065 Score=64.79 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=66.3
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChh
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVK 509 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~ 509 (695)
-..+.+++++|+..|..++ .+.| |...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4566788888888888776 4555 4555666677788888888887766654 45554 447777777888888888
Q ss_pred HHHHHHHHHHhcCCCCc
Q 005476 510 VGEESLKNLVTLEPMHS 526 (695)
Q Consensus 510 ~a~~~~~~~~~~~p~~~ 526 (695)
+|++.|+++++++|++.
T Consensus 167 ~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHhhhccCCCcH
Confidence 88888888888888775
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.0035 Score=57.37 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=81.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHH
Q 005476 388 NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN--DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYG 464 (695)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 464 (695)
....+..+...+...|++++|+..|++....+..+. ...+..+...+.+.|++++|...+.+..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566666777777888888888887776433222 24566666777777888888877777764 233 345555
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCC
Q 005476 465 CMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGR 541 (695)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (695)
.+...|...|+...+..-++.. ...++.|.+.++++++.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666655544322221 112577888888888888865 5555555554443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0017 Score=59.50 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHH
Q 005476 460 MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN----PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSD 534 (695)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (695)
...+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666777777777777777665 11222 3567778888888899999999999999998888888888888
Q ss_pred HHHHcCC
Q 005476 535 IYASAGR 541 (695)
Q Consensus 535 ~~~~~g~ 541 (695)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0015 Score=59.55 Aligned_cols=95 Identities=14% Similarity=-0.022 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHH
Q 005476 459 RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN----PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLS 533 (695)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (695)
....|..++..+...|++++|...+++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788888999988888876 22222 347888888999999999999999999999998888888888
Q ss_pred HHHH-------HcCCHHHHHHHHHHHH
Q 005476 534 DIYA-------SAGRCEDALRVMNQMR 553 (695)
Q Consensus 534 ~~~~-------~~g~~~~a~~~~~~m~ 553 (695)
.+|. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8888 8888887776666543
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.34 E-value=0.005 Score=61.15 Aligned_cols=133 Identities=12% Similarity=0.155 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccccHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 005476 390 FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSA-CSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVD 468 (695)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 468 (695)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998643 2233344433333 33457777799999999875 4567788999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 469 ILGRAGLVEEAYQFIKNM-PIPPN----PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 469 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999986 22233 3599999999999999999999999999988764
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=97.33 E-value=0.0055 Score=53.72 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=78.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCC
Q 005476 464 GCMVDILGRAGLVEEAYQFIKNMP-IPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGR 541 (695)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (695)
-....-+...|++++|..+|+-+- ..| |..-|..|...|...++++.|...+..+..++++|+.++...+.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 344455668899999999998761 223 566788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005476 542 CEDALRVMNQMRE 554 (695)
Q Consensus 542 ~~~a~~~~~~m~~ 554 (695)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998776
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.025 Score=53.25 Aligned_cols=148 Identities=11% Similarity=0.139 Sum_probs=106.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHh----
Q 005476 396 IQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILG---- 471 (695)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~---- 471 (695)
...|...|++++|++..+.. -..+....+ .....+..+++-|.+..+.|.. + .+..+.+-|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence 34678889999999888762 122222222 2334566778889999998864 2 33444554555444
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHH-HH
Q 005476 472 RAGLVEEAYQFIKNM--PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDAL-RV 548 (695)
Q Consensus 472 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~ 548 (695)
-.+.+.+|.-+|++| ...|+..+.+....++...|++++|+.+++.++..+++++.+...++-.-...|+-.++. +.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 456799999999999 357888888888888999999999999999999999999988888888777788775554 33
Q ss_pred HHHHH
Q 005476 549 MNQMR 553 (695)
Q Consensus 549 ~~~m~ 553 (695)
...++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44433
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.30 E-value=0.0025 Score=50.95 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHch
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEPND-VAFIAVLSACSHVGMVDEGRELFVSMS 451 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 451 (695)
|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...+++++|.+.|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666555 23332 344444445555555555555555543
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.27 E-value=0.0034 Score=64.73 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=59.0
Q ss_pred HhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHH
Q 005476 434 CSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVG 511 (695)
Q Consensus 434 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 511 (695)
....|++++|.+.|..+++ .-+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|+++.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3344555555555555543 11223445555556666666666666666554 3334 455666666677777777777
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHH
Q 005476 512 EESLKNLVTLEPMHSGDYILLSDI 535 (695)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~ 535 (695)
+..++++++++|+++.....+..+
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777776655554444
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.001 Score=50.78 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=52.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 499 LAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 499 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
...+.+.++++.|.+.++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999988754
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.00041 Score=52.15 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=46.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 503 RAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999877664
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0028 Score=60.61 Aligned_cols=98 Identities=21% Similarity=0.280 Sum_probs=80.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcC
Q 005476 397 QCLASNGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGRAG 474 (695)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 474 (695)
.-+.+.+++.+|+..|.+.++ +.|+ .+-|..=..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 457788999999999999999 7775 5566677888999999999999888776 45664 678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHhhHHHHH
Q 005476 475 LVEEAYQFIKNM-PIPPNPVIWRTLL 499 (695)
Q Consensus 475 ~~~~A~~~~~~m-~~~p~~~~~~~ll 499 (695)
++++|++.|++. .+.|+-.+|..=|
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999886 7788766665433
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.20 E-value=0.001 Score=49.48 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 005476 466 MVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999887 4456 566888888899999999999999999999999764
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.31 Score=49.09 Aligned_cols=107 Identities=13% Similarity=0.231 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCC
Q 005476 259 LMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGA 338 (695)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 338 (695)
+.+..+.-+...|+...|.++-.+..-+|-.-|-..+.+++..++|++-.++... . -.+.-|-.++.+|...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence 3444566667889999999999999889999999999999999999887665332 2 234678888889988888
Q ss_pred hhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHH
Q 005476 339 LETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVF 381 (695)
Q Consensus 339 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 381 (695)
..+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88887766551 1245678888999988887653
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.016 Score=57.78 Aligned_cols=154 Identities=10% Similarity=0.076 Sum_probs=109.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccccHHHHHHHHHHchhhcCCCCChhH------------
Q 005476 397 QCLASNGQGERALETYYIMREKNIEPNDVAFIAVLS--ACSHVGMVDEGRELFVSMSRDFDLEPRMEH------------ 462 (695)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 462 (695)
.++.-.|++++|...--...+ +.++.. +..+++ ++-..++.+.|...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 466678888888877666655 333322 222222 3345677888888888775 44554322
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHHhC-CC-----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHH
Q 005476 463 -YGCMVDILGRAGLVEEAYQFIKNM-PI-----PPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDI 535 (695)
Q Consensus 463 -~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (695)
+.-=.+...+.|++.+|.+.+.+. .+ +|+...|.....+..+.|+.++|+.--+.+++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 112234456889999999999876 33 44556676677778899999999999999999998877788888999
Q ss_pred HHHcCCHHHHHHHHHHHHhCC
Q 005476 536 YASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 536 ~~~~g~~~~a~~~~~~m~~~~ 556 (695)
+...++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999887643
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.12 E-value=0.072 Score=47.29 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHhh
Q 005476 420 IEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDL-EPRMEHYGCMVDILGRAGLVEEAYQFIKNMP-IPP---NPVI 494 (695)
Q Consensus 420 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~ 494 (695)
..|+..--..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|...++.+. ..| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777788899999999999999998875 54 4467778888888889999999999888861 122 2233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 495 WRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 495 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.-.+...+...|.++.|+..|+.++...|. +..-...+..+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 345677889999999999999999998874 45666777889999998888776665544
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0063 Score=58.60 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=87.1
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCcccHHH
Q 005476 457 EPRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAH---KNVKVGEESLKNLVTLEPMHSGDYIL 531 (695)
Q Consensus 457 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (695)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++..+ ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447899999999999999999999999876 3333 566777777775433 34678999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCccCC
Q 005476 532 LSDIYASAGRCEDALRVMNQMREQGIKKTP 561 (695)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 561 (695)
|+..+...|++.+|...|+.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654433
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.03 E-value=0.00045 Score=43.36 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHH
Q 005476 515 LKNLVTLEPMHSGDYILLSDIYASAGRCEDALR 547 (695)
Q Consensus 515 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 547 (695)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.02 E-value=0.0055 Score=49.56 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCCccHH
Q 005476 89 YNIMIRAFTLKQSPQEAVMLYKTMLQNSV-EPDRFTFACTLKACSRIR--------ALEEGEQIHAQILKSGFGCRQLVT 159 (695)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 159 (695)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|++.+++. ++-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 999999999999987653 244667889999999999999999
Q ss_pred HHHHHHHHh
Q 005476 160 NTLIHLYAN 168 (695)
Q Consensus 160 ~~Li~~y~~ 168 (695)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.01 E-value=0.0016 Score=51.33 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=49.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 005476 402 NGQGERALETYYIMREKNI-EPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEA 479 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 479 (695)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|.++++. . ...| +......+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777888888888877322 11334444567777788888888888776 2 2222 223334456777777777777
Q ss_pred HHHHHh
Q 005476 480 YQFIKN 485 (695)
Q Consensus 480 ~~~~~~ 485 (695)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.96 E-value=0.059 Score=53.73 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHHhc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHch
Q 005476 397 QCLASN-GQGERALETYYIMRE----KNIEPN--DVAFIAVLSACSHVGMVDEGRELFVSMS 451 (695)
Q Consensus 397 ~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 451 (695)
..|... |++++|++.|++..+ .| .+. ...+..+...+.+.|++++|.++|+++.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344444 555555555555432 12 111 1133444444555555555555555543
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.96 E-value=0.014 Score=60.44 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 005476 191 NSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKC 270 (695)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 270 (695)
.++|+.|.+.|..++++.+++.=...|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666666666666666666666666555444444444444444444
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.93 E-value=0.52 Score=47.00 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccccHHHHHHHHHHchhh-cCCCCC--hhH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIE-----PNDV-AFIAVLSACSHVGMVDEGRELFVSMSRD-FDLEPR--MEH 462 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~ 462 (695)
+..+...+.+.|++++|+++|++....-.. .+.. .|...+-.+...|+...|.+.|+..... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 334566777888888888888887664322 1222 2333344556678888888888876532 122222 344
Q ss_pred HHHHHHHHhh--cCCHHHHHHHHHhC
Q 005476 463 YGCMVDILGR--AGLVEEAYQFIKNM 486 (695)
Q Consensus 463 ~~~li~~~~~--~g~~~~A~~~~~~m 486 (695)
...|++++-. ...+++|..-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 5566666643 34677777777776
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.1 Score=49.02 Aligned_cols=170 Identities=14% Similarity=0.037 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC----------CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHH
Q 005476 260 MTAVVDMYAKCGHVDKARRLFEQMNI----------KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSV 329 (695)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~f~~m~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 329 (695)
+++|...|.-..-+++-...|+.-.. +-....+.++..+.-.|.+.-.+.++++.++...+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 34555555444444444444443322 12234566777777788888889999999887656677788888
Q ss_pred HHHHhccCChhHHHHHHHHHHHhC-----CCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHh
Q 005476 330 LSCCAVLGALETGKWVHLYVKKKR-----MELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLAS 401 (695)
Q Consensus 330 l~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 401 (695)
.+.-.+.|+.+.+...++...+.. ......+.......|.-..++..|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888889999999999998777643 333344444445567777888999999988775 356666666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005476 402 NGQGERALETYYIMREKNIEPNDVAFIAVL 431 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 431 (695)
.|+..+|++..+.|.+ ..|...+-.+++
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 7899999999999998 566665554443
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.007 Score=60.01 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=94.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHH---chhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHh
Q 005476 426 AFIAVLSACSHVGMVDEGRELFVS---MSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-------PI-PPNPV 493 (695)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~ 493 (695)
.|..|.+.|.-.|+++.|+..++. +.+++|-+. ....+..|...+.-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566666666777899999887764 233445443 2456778888999999999999988763 21 22345
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTL----E--PMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
+.-+|.++|....+++.|+.++.+-+.+ + .....++.+|+++|...|..++|+.+...-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888999999988876653 2 23345788999999999999999888776554
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.87 E-value=0.03 Score=60.45 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhc--CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 508 VKVGEESLKNLVTL--EPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 508 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
...+.+..++...+ +|.++..|..++-.+...|++++|...+++..+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34555566666554 67777889999888889999999999999999866
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.87 E-value=0.057 Score=56.82 Aligned_cols=167 Identities=13% Similarity=0.182 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhc
Q 005476 304 CKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKK 383 (695)
Q Consensus 304 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 383 (695)
+-+.+.-+++|++.|-.|+..... ..|+-.|.+.+|..+|.+ .|.+ |..+.+|.....++.|.+++..
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 445556678888888888876543 345667888888777643 3332 3345666666666667666654
Q ss_pred CCC--------------CChhHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCCC---CHHHHHHHHHHHhccccH
Q 005476 384 MPL--------------KNVFFWTVLIQCLASNGQGERALETYY------IMREKNIEP---NDVAFIAVLSACSHVGMV 440 (695)
Q Consensus 384 ~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~------~m~~~g~~p---~~~t~~~ll~a~~~~g~~ 440 (695)
-.. +|+.--.+-...+...|+.++|..+.- -+.+-+-+. +..+...+...+.+...+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 321 011111122333445666666665421 122222222 233555555555566677
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH
Q 005476 441 DEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMP-IPPNP 492 (695)
Q Consensus 441 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 492 (695)
..|-++|.+|-. ...++++....+++++|..+-++.| +.||+
T Consensus 764 gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 764 GLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred chHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 778888887732 2467888899999999999999885 34443
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.84 E-value=0.087 Score=50.98 Aligned_cols=171 Identities=9% Similarity=0.025 Sum_probs=95.5
Q ss_pred HhcchhhcCCHHHHHHHHhcCCCC--Ch-hH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHh
Q 005476 364 LMDFYAKCGLIENAVEVFKKMPLK--NV-FF---WTVLIQCLASNGQGERALETYYIMREKNIEPND--VAFIAVLSACS 435 (695)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~--~~-~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~ 435 (695)
....+.+.|++++|.+.|+.+... +. .. .-.++.+|.+.+++++|...|++..+ ..|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 334445567777777777766542 11 11 12344556667777777777777766 33332 23333333322
Q ss_pred c--cc---------------c---HHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhH
Q 005476 436 H--VG---------------M---VDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIW 495 (695)
Q Consensus 436 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 495 (695)
. .+ + ..+|.+.|+. +++-|-...-..+|...+..+...--..-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHHHHHH-
Confidence 1 00 1 1122233333 33333333334444443333310000001
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005476 496 RTLLAACRAHKNVKVGEESLKNLVTLEPMHSG---DYILLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 496 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
-.+..-|.+.|.+..|..-++.+++.-|+.+. +...+..+|.+.|..++|.++.+.+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 12344588899999999999999998876543 56688899999999999999887664
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.013 Score=58.15 Aligned_cols=129 Identities=12% Similarity=0.156 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 005476 425 VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGR-AGLVEEAYQFIKNM--PIPPNPVIWRTLLAA 501 (695)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a 501 (695)
.+|..++..+-+.+..+.|+.+|..+.+. -..+..+|-....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999753 22344555555556444 46666699999986 344578889999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 502 CRAHKNVKVGEESLKNLVTLEPMHS---GDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
+...++.+.+..+|++++..-|.+. ..|..++..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 47888888889999999999999998874
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.81 E-value=0.0022 Score=48.29 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=52.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 005476 459 RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHK-NVKVGEESLKNLVTLEP 523 (695)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 523 (695)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777888888888888888888875 3445 4668888888899998 79999999999999887
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=1.1 Score=48.73 Aligned_cols=355 Identities=12% Similarity=0.076 Sum_probs=179.5
Q ss_pred HHcCCCchHHHHHHHHH--------HhCCCCCChhhHH-----HHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHH
Q 005476 96 FTLKQSPQEAVMLYKTM--------LQNSVEPDRFTFA-----CTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTL 162 (695)
Q Consensus 96 ~~~~g~~~~A~~~~~~m--------~~~g~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 162 (695)
+.+.-++++-..+-... ..-|++.+..-|. .++.-+...+.+..|.++-..+...-... ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 44555555544443333 2345555554444 34666677788888888776664322122 5777777
Q ss_pred HHHHHhcC---ChhHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCC----CCHhHHHHHHHHHh
Q 005476 163 IHLYANCG---RIDIARKMFDRMSN--RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVK----FDEVTLINVLMACG 233 (695)
Q Consensus 163 i~~y~~~g---~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----pd~~t~~~ll~a~~ 233 (695)
..-+.+.. +-+.+..+-+++.. ...++|..+.+-..+.|+.+-|..+++.=...+-. .+..-+...+.-+.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 77777763 33344555555555 56778988888888999999998887653222111 01112445566666
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005476 234 RLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI-KDVVAWSAMISGYSQARRCKEALGVFH 312 (695)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (695)
..|+.+...+++-++.+.- +...+ ..-..+...|..+|.+.-. .|..+ +..+-+.++-.+++.-|.
T Consensus 558 es~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~ 624 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKL---NRSSL------FMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFH 624 (829)
T ss_pred hcCCchhHHHHHHHHHHHH---HHHHH------HHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhh
Confidence 6777776666665554431 00001 1111223344444444321 11111 111122222222222221
Q ss_pred Hh------HHCCCCCCHHHHHHHHHHHhccCChhHHH-HHHHHH---------H-HhCCCCchHHHhHHhcchhhcCCHH
Q 005476 313 DM------QMANVVPNEVTMVSVLSCCAVLGALETGK-WVHLYV---------K-KKRMELTITLGTALMDFYAKCGLIE 375 (695)
Q Consensus 313 ~m------~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~i~~~~---------~-~~~~~~~~~~~~~li~~y~~~g~~~ 375 (695)
.- ...|..|+.. ..-++|++........ .+-+.+ . +.|....-.+.+--+.-+...|+..
T Consensus 625 ~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 625 LQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 10 0122333332 3334444444322111 111111 1 1121111111222222334456777
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcC
Q 005476 376 NAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFD 455 (695)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 455 (695)
+|.++-.+..-+|-..|-.-+.+++..+++++-+++-+.+. .++-|.-...+|.+.|+.++|.+++.+.. |
T Consensus 702 ~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~ 772 (829)
T KOG2280|consen 702 RAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---G 772 (829)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---C
Confidence 77777777777777777777777777777766555443332 13445555667777777777777765542 2
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 005476 456 LEPRMEHYGCMVDILGRAGLVEEAYQFI 483 (695)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (695)
+. -.+.+|.+.|++.+|.++-
T Consensus 773 l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 773 LQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hH-------HHHHHHHHhccHHHHHHHH
Confidence 11 3566777777777776554
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.78 E-value=0.019 Score=46.53 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=64.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCchHHHHH
Q 005476 192 SMFSGYVKTECWREIVDLFNEMRDLGV-KFDEVTLINVLMACGRLA--------DIELGGWISEYMEEKELNGNVKLMTA 262 (695)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 262 (695)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+.....+++.++..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456666677999999999999999999 999999999999887643 23456788899999999999999999
Q ss_pred HHHHHHh
Q 005476 263 VVDMYAK 269 (695)
Q Consensus 263 li~~~~~ 269 (695)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9887755
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.77 E-value=0.028 Score=49.19 Aligned_cols=87 Identities=8% Similarity=-0.030 Sum_probs=42.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHh
Q 005476 394 VLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILG 471 (695)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 471 (695)
.+..-+.+.|++++|..+|+-+.. +.|... -|..|..+|-..|++++|+..|..... +.| ++..+-.+...|.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHH
Confidence 333444455555555555555555 444433 334444444555555555555555432 222 3444444444555
Q ss_pred hcCCHHHHHHHHHh
Q 005476 472 RAGLVEEAYQFIKN 485 (695)
Q Consensus 472 ~~g~~~~A~~~~~~ 485 (695)
..|+.+.|.+-|+.
T Consensus 115 ~lG~~~~A~~aF~~ 128 (157)
T PRK15363 115 ACDNVCYAIKALKA 128 (157)
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555544443
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.76 E-value=0.013 Score=60.54 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=88.7
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC----CCeeh
Q 005476 116 SVEPDRFTFACTLKACSRIRALEEGEQIHAQILKS--GFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN----RDVFS 189 (695)
Q Consensus 116 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~ 189 (695)
+.+.+......+++.+....+++.+..++-..... ....-..+..++|+.|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456677777888888777888888777776655 2223345667888888888888888888876444 78888
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 005476 190 WNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRL 235 (695)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 235 (695)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777777777777666666544
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.75 E-value=0.036 Score=46.61 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=68.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHh
Q 005476 395 LIQCLASNGQGERALETYYIMREKNIEPND--VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILG 471 (695)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 471 (695)
...++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445677889999999999999998877653 3677888899999999999999998876432111 2223333455778
Q ss_pred hcCCHHHHHHHHHhC
Q 005476 472 RAGLVEEAYQFIKNM 486 (695)
Q Consensus 472 ~~g~~~~A~~~~~~m 486 (695)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999998876543
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.73 E-value=0.75 Score=46.02 Aligned_cols=210 Identities=17% Similarity=0.156 Sum_probs=130.4
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCC-----CCChh--HHHHHHHHHH---hcCC
Q 005476 335 VLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP-----LKNVF--FWTVLIQCLA---SNGQ 404 (695)
Q Consensus 335 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~ 404 (695)
+.|+.+.+.++-+..-..- +.-.....+.++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+ -.-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4455555544444333321 1223344555566666666666666665432 23332 1222232221 1234
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH--H-
Q 005476 405 GERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEA--Y- 480 (695)
Q Consensus 405 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~- 480 (695)
...|...-.+..+ +.||.+ .-.....++.+.|++.++-.+++.+- +..|.+..+...+ +.|.|+.... .
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkR 317 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLYV--RARSGDTALDRLKR 317 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHH
Confidence 5566666555555 788876 44455678899999999999999986 4567776654433 4455542221 1
Q ss_pred -HHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 005476 481 -QFIKNMPIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASA-GRCEDALRVMNQMREQ 555 (695)
Q Consensus 481 -~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 555 (695)
+-++.| +| +..+.-++..+-...|++..|..-.+.+....|.. +.|..|.++-... |+-.++...+-+..+.
T Consensus 318 a~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 122333 45 45666677788889999999999999999999964 6888999987655 9999998888776653
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.72 E-value=0.26 Score=47.67 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC---hhH---HHHHHHHHHhcCCHHHHHHHHHHhHHCC
Q 005476 263 VVDMYAKCGHVDKARRLFEQMNIKD---VVA---WSAMISGYSQARRCKEALGVFHDMQMAN 318 (695)
Q Consensus 263 li~~~~~~g~~~~A~~~f~~m~~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (695)
....+...|++++|.+.|+++.... ... .-.++.+|.+.+++++|...|++..+.-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444567788888888888875431 122 2345667788888888888888887753
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.72 E-value=0.012 Score=57.42 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cccHHHHHH
Q 005476 463 YGCMVDILGRAGLVEEAYQFIKNM-PIPPNP----VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH---SGDYILLSD 534 (695)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 534 (695)
|..-+..+.+.|++++|...|+.. ...|+. ..+--+..++...|+++.|...|+.+++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445556666666666554 122321 234445666777777777777777777766654 334455566
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 005476 535 IYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 535 ~~~~~g~~~~a~~~~~~m~~~ 555 (695)
+|...|++++|.++++...+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776653
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.72 E-value=0.0022 Score=48.11 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=22.6
Q ss_pred cccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 437 VGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
.|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555432 1123444444555555555555555555554
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.86 Score=46.43 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCc---chHHHHHHHHHcCCCchHHHHHHHH
Q 005476 35 DLNQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDS---SAYNIMIRAFTLKQSPQEAVMLYKT 111 (695)
Q Consensus 35 ~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~ 111 (695)
+.-++..++... +.|...|-.|+.-|... |..++-++++++|..|-+ .+|..-|++-...+++.....+|.+
T Consensus 27 D~lrLRerIkdN--PtnI~S~fqLiq~~~tq---~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 27 DELRLRERIKDN--PTNILSYFQLIQYLETQ---ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred hHHHHHHHhhcC--chhHHHHHHHHHHHhhh---hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 334444544433 45788899999999999 999999999999987754 3799999988888899999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChH------HHHHHHHHHHH-hCCCCC-ccHHHHHHHHHHh---------cCChhH
Q 005476 112 MLQNSVEPDRFTFACTLKACSRIRALE------EGEQIHAQILK-SGFGCR-QLVTNTLIHLYAN---------CGRIDI 174 (695)
Q Consensus 112 m~~~g~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~-~~~~~~Li~~y~~---------~g~~~~ 174 (695)
.+..... ...|..-|.-..+....- .-.+.++..+. .+++|- ...|+..+...-. ..++|.
T Consensus 102 CL~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 102 CLKKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred HHhhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 8876544 445555555444433221 12234444443 345543 3456655554431 234566
Q ss_pred HHHHHhccCC
Q 005476 175 ARKMFDRMSN 184 (695)
Q Consensus 175 A~~~f~~m~~ 184 (695)
.++.+.++..
T Consensus 180 iR~~Y~ral~ 189 (660)
T COG5107 180 IRNGYMRALQ 189 (660)
T ss_pred HHHHHHHHHc
Confidence 6677776654
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.68 E-value=0.015 Score=53.30 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=73.7
Q ss_pred HHHHhcC--CCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 005476 378 VEVFKKM--PLKNVFFWTVLIQCLAS-----NGQGERALETYYIMREKNIEPNDVAFIAVLSACSHV------------- 437 (695)
Q Consensus 378 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 437 (695)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677888888888775 466777777888999999999999999999877542
Q ss_pred ---ccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 005476 438 ---GMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGL 475 (695)
Q Consensus 438 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 475 (695)
.+.+-|++++++|.. +|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234567888888854 6888888888888888877664
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=1.2 Score=47.81 Aligned_cols=374 Identities=14% Similarity=0.110 Sum_probs=186.7
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-CC--------CCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCee
Q 005476 118 EPDRFTFACTLKACSRIRALEEGEQIHAQILKS-GF--------GCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVF 188 (695)
Q Consensus 118 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 188 (695)
.|.+..|..+.......-+++.|+..|-+.... |+ -.+...-.+=|.+| -|++++|++++-.|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 355666666666555555555555544332110 11 01111112223333 3899999999998887775
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHH
Q 005476 189 SWNSMFSGYVKTECWREIVDLFNEMRDLGVKFD----EVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVV 264 (695)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 264 (695)
-|..+.+.|+|-...++++. .|-..| ...+..+...++....|+.|.+.+...... ..++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 35667778888766665543 222222 234667777777777777777776554321 2356
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 005476 265 DMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKW 344 (695)
Q Consensus 265 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 344 (695)
++|.+..++++-+.+-+.+++. ....-.|...+...|.-++|.+.|-+-. .| ...+.+|...+++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHH
Confidence 6666666677666666666553 3445567778888888888888775432 12 134567777777777766
Q ss_pred HHHHHHHhCCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCC
Q 005476 345 VHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMRE----KNI 420 (695)
Q Consensus 345 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~ 420 (695)
+-+... -|.+. +|+.- .|.+++.+.... --|..+.+.|+.-+|-+++.+|.+ .+.
T Consensus 900 laq~~~----l~qv~---tliak--------~aaqll~~~~~~------eaIe~~Rka~~~~daarll~qmae~e~~K~~ 958 (1189)
T KOG2041|consen 900 LAQRFQ----LPQVQ---TLIAK--------QAAQLLADANHM------EAIEKDRKAGRHLDAARLLSQMAEREQEKYV 958 (1189)
T ss_pred HHHhcc----chhHH---HHHHH--------HHHHHHhhcchH------HHHHHhhhcccchhHHHHHHHHhHHHhhccC
Confidence 543211 11111 12211 122222221110 123456667777788888888754 345
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHH
Q 005476 421 EPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLA 500 (695)
Q Consensus 421 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 500 (695)
+|-..--.-+|.+..- .+..++.+-.+.... +|...+.-. +...|-+.++-++.+..- .-...|.-++-
T Consensus 959 p~lr~KklYVL~AlLv-E~h~~~ik~~~~~~~-~g~~~dat~-------lles~~l~~~~ri~~n~W--rgAEAyHFmil 1027 (1189)
T KOG2041|consen 959 PYLRLKKLYVLGALLV-ENHRQTIKELRKIDK-HGFLEDATD-------LLESGLLAEQSRILENTW--RGAEAYHFMIL 1027 (1189)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhh-cCcchhhhh-------hhhhhhhhhHHHHHHhhh--hhHHHHHHHHH
Confidence 5544432233333321 111122222221111 121111100 122233333333333220 11223333333
Q ss_pred H--HHhcCChhHHHHHHHHHHhcC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 005476 501 A--CRAHKNVKVGEESLKNLVTLE--PMHSGDYILLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 501 a--~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 552 (695)
+ ....|.++.|.+..-.+...+ -+....|..|+-+-+....+.-.-+.|-++
T Consensus 1028 AQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1028 AQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 3 445577777776655554422 112346666665555544454444444443
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.67 E-value=0.0074 Score=61.82 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=40.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 491 NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGD---YILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 491 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
+...|+.+..+|...|++++|+..++++++++|++..+ |..++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666666665533 666666666666666666666666553
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.09 Score=49.37 Aligned_cols=182 Identities=12% Similarity=0.045 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC--CCc--------chHHHHHHHHHcCCCchHHH
Q 005476 37 NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINE--PDS--------SAYNIMIRAFTLKQSPQEAV 106 (695)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~ 106 (695)
+-+|+.+.... ++-+++|...|.-. .-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+
T Consensus 125 R~lhAe~~~~l----gnpqesLdRl~~L~---~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~ 197 (366)
T KOG2796|consen 125 RILHAELQQYL----GNPQESLDRLHKLK---TVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSV 197 (366)
T ss_pred HHHHHHHHHhc----CCcHHHHHHHHHHH---HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhH
Confidence 77888776552 23367888887766 556666666654322 222 23456677777778888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHH-----HHHHHHHhcCChhHHHHHHhc
Q 005476 107 MLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTN-----TLIHLYANCGRIDIARKMFDR 181 (695)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~Li~~y~~~g~~~~A~~~f~~ 181 (695)
.++.+.++...+.++.....+.+.-.+.||.+.|...|+...+..-..|....+ .....|.-..++..|.+.|++
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 899988887666677777888888888899999999999877653334443333 333445556788888888888
Q ss_pred cCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 005476 182 MSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLIN 227 (695)
Q Consensus 182 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 227 (695)
++. +|++.-|.-.-+..-.|+...|++.++.|+.. .|...+-++
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 776 35555565555555678888999999988874 455444443
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.64 E-value=0.027 Score=47.34 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=57.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CcccHHHHHHHHHH
Q 005476 467 VDILGRAGLVEEAYQFIKNM---PIPPN--PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPM---HSGDYILLSDIYAS 538 (695)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 538 (695)
..++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|+.++++.+...|+ +......++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44555667777777777654 22211 234555667777888888888888888777676 44455566667778
Q ss_pred cCCHHHHHHHHHHHH
Q 005476 539 AGRCEDALRVMNQMR 553 (695)
Q Consensus 539 ~g~~~~a~~~~~~m~ 553 (695)
.|+.++|...+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888887765543
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.55 E-value=0.057 Score=47.91 Aligned_cols=104 Identities=15% Similarity=0.242 Sum_probs=90.4
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--Cc
Q 005476 452 RDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM---PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPM--HS 526 (695)
Q Consensus 452 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~ 526 (695)
++..+.|++..--.|...+.+.|+..||...|++. .+.-|....-.+..+....+++..|...++.+.+.+|. .+
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33456688888889999999999999999999986 34557888888889999999999999999999998863 56
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 527 GDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
.....++..|...|+.++|...|+.....
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 67889999999999999999999998874
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.54 E-value=0.016 Score=53.13 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 005476 136 ALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGR 171 (695)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 171 (695)
+.+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345677888888888888888888888888765543
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.51 E-value=0.26 Score=52.10 Aligned_cols=200 Identities=17% Similarity=0.179 Sum_probs=113.4
Q ss_pred hHHHHHHHHhccCChHHHHHH--HHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhC
Q 005476 123 TFACTLKACSRIRALEEGEQI--HAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKT 200 (695)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 200 (695)
.++..-++|.+.+++.--+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|.+ .
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 345555666666665433322 445666776566543 34556677899999888864 4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 005476 201 ECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLF 280 (695)
Q Consensus 201 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 280 (695)
|.-..|+++|.+|+-- -..+-+...|+.++-+.+.+.-.+.. .++.--.+-..++...|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh
Confidence 5556667776666431 11222333444444333332221110 01111123445666777777776652
Q ss_pred HhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHH
Q 005476 281 EQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITL 360 (695)
Q Consensus 281 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 360 (695)
..+|-.+-++++-+++.. .+..+...+...+-+...+..|.+||..|-..
T Consensus 727 ------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------- 776 (1081)
T KOG1538|consen 727 ------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------- 776 (1081)
T ss_pred ------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence 345555555555555432 23345555555555666777777777766443
Q ss_pred HhHHhcchhhcCCHHHHHHHHhcCCC
Q 005476 361 GTALMDFYAKCGLIENAVEVFKKMPL 386 (695)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~ 386 (695)
.+++++....+++++|..+-++.++
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCcc
Confidence 3577888888999999988888876
No 208
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.48 E-value=0.04 Score=50.14 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=44.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005476 87 SAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEP--DRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIH 164 (695)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 164 (695)
..|..+...+...|++++|+..|+........| ...++..+-..+...|+.++|...+....+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345566666666677777777777665532222 12355556666666667777776666666542 222334444444
Q ss_pred HHH
Q 005476 165 LYA 167 (695)
Q Consensus 165 ~y~ 167 (695)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.48 E-value=1.1 Score=44.87 Aligned_cols=123 Identities=12% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHHHHHHHc--CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCChHHHHHHHHHHHHhCCCCCccH--HHHH
Q 005476 89 YNIMIRAFTL--KQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACS--RIRALEEGEQIHAQILKSGFGCRQLV--TNTL 162 (695)
Q Consensus 89 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~L 162 (695)
|.+|-.++.- .|+-..|.++-.+..+. +..|..-+..+|.+-. -.|+.+.|++-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444433 34444454444433321 2334444444443322 335556666666555431 11111 1111
Q ss_pred HHHHHhcCChhHHHHHHhccCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005476 163 IHLYANCGRIDIARKMFDRMSN--R-DVFSWNSMFSGYVKTECWREIVDLFNEMRD 215 (695)
Q Consensus 163 i~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 215 (695)
.----+.|..+.|+..-++.-. | -...|.+.+...+..|+|+.|+++++.-+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1112244555555555444332 1 223455555666666666666666555433
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.43 E-value=0.0049 Score=41.46 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHH
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSD 534 (695)
Q Consensus 493 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (695)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999888777654
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.31 E-value=0.23 Score=50.42 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=76.9
Q ss_pred chhhcCCHHHHHHHHhcCCCC---Ch----hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005476 367 FYAKCGLIENAVEVFKKMPLK---NV----FFWTVLIQCLAS---NGQGERALETYYIMREKNIEPNDVAFIAVLSACSH 436 (695)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (695)
.|....+++.-.++.+.+... ++ ..--...-++-+ .|+.++|++++..+....-.++..||..+...|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 455666666666666665542 11 111122234444 67777888877776655556666676666554422
Q ss_pred ---------cccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH----HHHH---Hh-C----CCCC--CHh
Q 005476 437 ---------VGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEA----YQFI---KN-M----PIPP--NPV 493 (695)
Q Consensus 437 ---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-m----~~~p--~~~ 493 (695)
....++|...|.+. +.+.|+..+--.++..+...|.-.+. .++- .. . ...+ |--
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 12355666665544 34455544333333333333331111 1111 00 0 1112 223
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTLEPM 524 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 524 (695)
.+.+++.++.-.||++.|.+..++++++.|+
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3345666666666666666666666666554
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.27 E-value=0.013 Score=44.55 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=50.4
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccc
Q 005476 467 VDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGD 528 (695)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (695)
-..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|.+.++++++..|+++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 35678889999999998887 4445 56677778888999999999999999999999977544
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.21 E-value=2.2 Score=45.47 Aligned_cols=410 Identities=11% Similarity=0.116 Sum_probs=224.0
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHH
Q 005476 84 PDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRF-TFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTL 162 (695)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 162 (695)
-+...|+++|..--+....+.+...+..++.. .|..+ -|.....-=.+.|..+.+.++|++.+.. ++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 34556888887665555666677777777653 34433 2333333334677888888888888764 56666677666
Q ss_pred HHHHH-hcCChhHHHHHHhccCC------CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHh--
Q 005476 163 IHLYA-NCGRIDIARKMFDRMSN------RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACG-- 233 (695)
Q Consensus 163 i~~y~-~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-- 233 (695)
+..+. ..|+.+..++.|+...+ .+...|...|.--...+++.....++++.++. |. ..|+....-+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHH
Confidence 55544 34677777788877654 35567888888888888889999999888763 11 11222111111
Q ss_pred -cc------CChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHH
Q 005476 234 -RL------ADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGH-VDKARRLFEQMNIKDVVAWSAMISGYSQARRCK 305 (695)
Q Consensus 234 -~~------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 305 (695)
+. ...+...++-...... ..-...++ .+.-....+....+ .+..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDP--------------SKSLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCc--------------cchhh
Confidence 10 1111111111111100 00000000 00000111111100 01111
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-------CCCCchHHHhHHhcchhhcCCHHHHH
Q 005476 306 EALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKK-------RMELTITLGTALMDFYAKCGLIENAV 378 (695)
Q Consensus 306 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (695)
++.....+.... -..+|. ..-.....+..++.-++. -..++..+|+..++.-.+.|+.+.+.
T Consensus 249 ~~~~~l~~~~~~----~~~~~~-------~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIVSI----HEKVYQ-------KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred HHHHHHHHHHHH----HHHHHH-------hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 111111111000 000000 001111112222222221 11234567777777788888888888
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcC
Q 005476 379 EVFKKMPLK---NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFD 455 (695)
Q Consensus 379 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 455 (695)
-+|++...| -...|--.+.-....|+.+-|..++....+--++-...+-..-..-+-..|+++.|..+++.+..+
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-- 395 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-- 395 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--
Confidence 888887654 234565555555556888888877776655433333333322223356678999999999999774
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHhhHHHHHH-----HHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 456 LEPR-MEHYGCMVDILGRAGLVEEAY---QFIKNM-PIPPNPVIWRTLLA-----ACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 456 ~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
+ |+ +..-.--+.+..+.|..+.+. +++... +.+-+..+...+.- -+...++.+.|..++.++.+..|++
T Consensus 396 ~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 396 Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 3 54 334444566778889999887 555443 22223333332222 2455688999999999999999999
Q ss_pred cccHHHHHHHHHHcCC
Q 005476 526 SGDYILLSDIYASAGR 541 (695)
Q Consensus 526 ~~~~~~l~~~~~~~g~ 541 (695)
...|..+++.....+.
T Consensus 475 k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999988776663
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.041 Score=55.23 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=58.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 492 PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 492 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
..++..|...+.+.+++..|++..+++++++|+|..+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456677778899999999999999999999999999999999999999999999999999873
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.088 Score=46.55 Aligned_cols=62 Identities=26% Similarity=0.324 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 493 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.....++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.++|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999999999999999999998854
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.12 E-value=0.0095 Score=46.07 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVTL----EPM---HSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 493 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777788888888888888888764 222 234677889999999999999999887654
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.05 E-value=0.084 Score=51.56 Aligned_cols=91 Identities=8% Similarity=0.085 Sum_probs=49.2
Q ss_pred ccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChh
Q 005476 436 HVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM----PIPP-NPVIWRTLLAACRAHKNVK 509 (695)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~ 509 (695)
+.|++++|...|+.+++.+.-.+ ....+--+...|...|++++|...|+.+ |..| ....|-.+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 33455555555555544321111 0123344555555555666655555554 1111 1333444555666788888
Q ss_pred HHHHHHHHHHhcCCCCc
Q 005476 510 VGEESLKNLVTLEPMHS 526 (695)
Q Consensus 510 ~a~~~~~~~~~~~p~~~ 526 (695)
.|...++++++..|++.
T Consensus 235 ~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHCcCCH
Confidence 88888888888888654
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.05 E-value=0.4 Score=40.13 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=85.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 005476 400 ASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEA 479 (695)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 479 (695)
.-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456777777887777652 24445566655444445555556666665432222 234555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 005476 480 YQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIK 558 (695)
Q Consensus 480 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 558 (695)
..-+-.++ .+......-+.+...+|.-+.-.+++..+.+.+..++...+.++++|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55544443 233445667788889999999999999998766667888999999999999999999999999999975
No 219
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=2.3 Score=46.62 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=57.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCC---CccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHH
Q 005476 130 ACSRIRALEEGEQIHAQILKSGFGC---RQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREI 206 (695)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 206 (695)
.+.+.+.+++|........ |..+ -..++..+|+.+.-.|++++|-...-.|-..+..-|.-.+..+...++....
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3444455555554443332 2233 2346677788888888888888888888777777777777777776665443
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005476 207 VDLFNEMRDLGVKFDEVTLINVLMACGR 234 (695)
Q Consensus 207 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 234 (695)
..+ +.....+.+...|..+|-.+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH
Confidence 332 2211112233445555555543
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.84 E-value=0.079 Score=52.86 Aligned_cols=255 Identities=14% Similarity=-0.009 Sum_probs=133.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHhH----HHHHHHHHhccCChhHHHHHHHHHHH--h--CC-CCchHHHHHHHHH
Q 005476 196 GYVKTECWREIVDLFNEMRDLGVKFDEVT----LINVLMACGRLADIELGGWISEYMEE--K--EL-NGNVKLMTAVVDM 266 (695)
Q Consensus 196 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~li~~ 266 (695)
-+++.|+....+.+|+..++.|- -|..| |..+-.+|.-.+++++|.+.|..=+- . |- .........|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35566666666666666666552 23222 44455556666666666666543211 0 10 0011222233344
Q ss_pred HHhcCCHHHHHHHHHh-------cCCC--ChhHHHHHHHHHHhcCCH--------------------HHHHHHHHHhH--
Q 005476 267 YAKCGHVDKARRLFEQ-------MNIK--DVVAWSAMISGYSQARRC--------------------KEALGVFHDMQ-- 315 (695)
Q Consensus 267 ~~~~g~~~~A~~~f~~-------m~~~--~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~-- 315 (695)
+--.|.+++|.....+ +..+ ...++-.+...|...|+. +.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555443221 1111 122333445555444331 23334443211
Q ss_pred --HCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHH----hCCC-CchHHHhHHhcchhhcCCHHHHHHHHhcC---
Q 005476 316 --MANVV-PNEVTMVSVLSCCAVLGALETGKWVHLYVKK----KRME-LTITLGTALMDFYAKCGLIENAVEVFKKM--- 384 (695)
Q Consensus 316 --~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~--- 384 (695)
..|-. .-...|..+-+.|.-.|+++.+...|+.-.. .|-. .....+..|.++|.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 1123455556666667888888877765433 2211 22345666778888888888888877643
Q ss_pred ----CCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHch
Q 005476 385 ----PLK--NVFFWTVLIQCLASNGQGERALETYYIMRE----KN-IEPNDVAFIAVLSACSHVGMVDEGRELFVSMS 451 (695)
Q Consensus 385 ----~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 451 (695)
..+ ...+..++...|.-..++++|+.++.+-.. .+ .--....+-+|..++...|..++|+.+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 233455677777777788888887766432 11 11233467778888888888888877665443
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.83 E-value=2.7 Score=43.21 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=55.1
Q ss_pred HHHHHhCCCCC----CHhhHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 005476 480 YQFIKNMPIPP----NPVIWRTLLAA--CRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 480 ~~~~~~m~~~p----~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 552 (695)
..++++.++.| +...-|.|..| ...+|++.++.-...-+.+..| ++.+|-.++-......++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555555554 34456666666 5688999999888888888888 7788888888888999999999988764
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.71 E-value=0.016 Score=44.79 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005476 462 HYGCMVDILGRAGLVEEAYQFIKNM-------P-IPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVTL 521 (695)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 521 (695)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555555666666555555543 1 1122 445667777777777788877777777653
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.58 E-value=1 Score=42.32 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=37.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHcCCHHHHH
Q 005476 498 LLAACRAHKNVKVGEESLKNLVTLEPMHSG---DYILLSDIYASAGRCEDAL 546 (695)
Q Consensus 498 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 546 (695)
+..-|.+.|.+..|..-++.+++.-|+... +...++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345588999999999999999999887644 4567888899999888544
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.55 E-value=0.13 Score=43.76 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 005476 420 IEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVD 468 (695)
Q Consensus 420 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 468 (695)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455555555555555555555555555555555554444444444443
No 225
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.2 Score=48.51 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=17.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005476 388 NVFFWTVLIQCLASNGQGERALETYYIMRE 417 (695)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (695)
|...|-.|...|...|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455566666666666666666666665555
No 226
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.43 Score=48.06 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=104.0
Q ss_pred cchhhcCCHHHHHHHHhcCCCCChhH-HHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH---HH-------
Q 005476 366 DFYAKCGLIENAVEVFKKMPLKNVFF-WTVLIQ--CLASNGQGERALETYYIMREKNIEPNDVAFIAV---LS------- 432 (695)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~------- 432 (695)
.++.-.|+.++|.++--.+.+-|... +...+. ++-..++.+.|...|++.+. +.|+...-..+ ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 34556678888877766555544332 333333 34457788999999999888 67776533222 22
Q ss_pred ---HHhccccHHHHHHHHHHchhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh-hHHHHHHH--
Q 005476 433 ---ACSHVGMVDEGRELFVSMSRDFDLEP-----RMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPV-IWRTLLAA-- 501 (695)
Q Consensus 433 ---a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll~a-- 501 (695)
-..+.|.+..|.+.|.+.+ ++.| +...|.....+..+.|++++|+.--++. .+.|.. ++..+..+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syikall~ra~c 330 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYIKALLRRANC 330 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHHHHHHHHHHH
Confidence 2345789999999998886 4555 4566777778889999999999988776 344544 33333333
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC
Q 005476 502 CRAHKNVKVGEESLKNLVTLEPM 524 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~ 524 (695)
+...++++.|.+-++++.+...+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 55668899999999999887643
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.30 E-value=2.6 Score=39.68 Aligned_cols=193 Identities=22% Similarity=0.175 Sum_probs=116.8
Q ss_pred HHHhHHhcchhhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 005476 359 TLGTALMDFYAKCGLIENAVEVFKKMP-----LKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLS- 432 (695)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 432 (695)
.........+...+.+..+...+.... ......+......+...+++.++.+.+.........+.. .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHHH
Confidence 344444555555566666655555432 223344555555666666677777777777663333211 1112222
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HhhHHHHHHHHHhc
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEP----RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN--PVIWRTLLAACRAH 505 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~a~~~~ 505 (695)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56677777777777777642 222 2333444444466677788887777765 22333 45667777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 506 KNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
++++.+...+...+...|.....+..+...+...|.++++...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888888888888877764455666666666667788888777776653
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.12 Score=49.28 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cccHHHH
Q 005476 463 YGCMVDILGRAGLVEEAYQFIKNM-------PIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH---SGDYILL 532 (695)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 532 (695)
|+.-++. .+.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|++ +.++.-|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4443333 3445566666655543 245666666 6777888888888888888888866544 5567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 005476 533 SDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
+....+.|+.++|..++++..++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88888888888888888888764
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.20 E-value=0.17 Score=42.15 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=71.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCc---ccHHHHHHHHHHcCC
Q 005476 468 DILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLE-PMHS---GDYILLSDIYASAGR 541 (695)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 541 (695)
-+++..|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|..-+++++++- |... .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888765 3333 67788999999999999999999999999975 3321 257888889999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 005476 542 CEDALRVMNQMREQGI 557 (695)
Q Consensus 542 ~~~a~~~~~~m~~~~~ 557 (695)
-+.|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877664
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=6.6 Score=43.63 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=68.9
Q ss_pred HHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHH----HHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005476 56 ENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMI----RAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKAC 131 (695)
Q Consensus 56 ~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 131 (695)
..-+++..+- ..++.|..+-+.-.. |...-..+. +-+.+.|++++|...|-+-... +.|. .+++-+
T Consensus 338 e~kL~iL~kK---~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 338 ETKLDILFKK---NLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHh---hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 3445555555 667777777655332 222222222 2345678888888777665542 3332 345555
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccC
Q 005476 132 SRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS 183 (695)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 183 (695)
........-..+++.+.+.|+. +..--+.|+.+|.+.++.+.-.+..+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555555666667777777753 33344677888888888877777666554
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.13 E-value=0.21 Score=42.44 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHH
Q 005476 455 DLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM----PIPPNPVIWRTLLAACR 503 (695)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~ 503 (695)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45566677777777777777777777666654 44445666766665543
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.11 E-value=0.52 Score=40.59 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 005476 468 DILGRAGLVEEAYQFIKNM----PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG 527 (695)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (695)
....+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.++++|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3345678888888888776 3333 2334456778888999999999999999999887654
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.33 Score=48.98 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 005476 461 EHYGCMVDILGRAGLVEEAYQFIKNM-PIP-PNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYAS 538 (695)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (695)
..+..|.-.|.+.+++.+|++..++. ... +|.-..--=..+|...|+++.|+..|+++++++|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45667788889999999999888775 333 3555555567789999999999999999999999998888888887776
Q ss_pred cCCHHHH-HHHHHHHHhC
Q 005476 539 AGRCEDA-LRVMNQMREQ 555 (695)
Q Consensus 539 ~g~~~~a-~~~~~~m~~~ 555 (695)
.....+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665554 7888888764
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.81 E-value=0.22 Score=47.29 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=80.6
Q ss_pred HHHHHHhcCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----------
Q 005476 376 NAVEVFKKMP--LKNVFFWTVLIQCLASN-----GQGERALETYYIMREKNIEPNDVAFIAVLSACSHVG---------- 438 (695)
Q Consensus 376 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 438 (695)
..++.|.... ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 67888999999888754 456666777899999999999999999998776532
Q ss_pred ------cHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHH
Q 005476 439 ------MVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVE 477 (695)
Q Consensus 439 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 477 (695)
.-+-++.++++| +.+|+.||.++-..|+.++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234578899999 45799999999999999999988643
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=94.79 E-value=1.7 Score=45.16 Aligned_cols=157 Identities=10% Similarity=0.100 Sum_probs=94.0
Q ss_pred hHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cccHHHHHHHHHHch
Q 005476 390 FFW--TVLIQCLASNG-----QGERALETYYIMRE-KNIEPNDV-AFIAVLSACSH---------VGMVDEGRELFVSMS 451 (695)
Q Consensus 390 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 451 (695)
..| ..++.+..... ..+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55665554421 34578888998882 23777755 44443332221 234455666666555
Q ss_pred hhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccc
Q 005476 452 RDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGD 528 (695)
Q Consensus 452 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (695)
+ +.| |......+..++.-.|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 333 5666666666677777788888888776 44554 4455555555667788888888888888888865443
Q ss_pred HH--HHHHHHHHcCCHHHHHHHHH
Q 005476 529 YI--LLSDIYASAGRCEDALRVMN 550 (695)
Q Consensus 529 ~~--~l~~~~~~~g~~~~a~~~~~ 550 (695)
-+ ..+++|...+ .++|.+++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 32 3344555544 455665553
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.77 E-value=5.8 Score=40.86 Aligned_cols=247 Identities=12% Similarity=0.109 Sum_probs=118.6
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHhccCCCC-CcchHHHHHHHH--HcCCCchHHHHHHHHHHhC--CCCC---C-----
Q 005476 54 ISENLLEAAAILIPATTMDYALSIFHKINEP-DSSAYNIMIRAF--TLKQSPQEAVMLYKTMLQN--SVEP---D----- 120 (695)
Q Consensus 54 ~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p---~----- 120 (695)
..+.++++|-- .+++.-........+. ....|-.+..++ -+.+.+..|++.+..-... +..| |
T Consensus 48 l~grilnAffl----~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFL----NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 34556666653 3455544444433321 123455555543 3566777777776655443 2222 1
Q ss_pred ----hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHH
Q 005476 121 ----RFTFACTLKACSRIRALEEGEQIHAQILKSGFG----CRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNS 192 (695)
Q Consensus 121 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 192 (695)
-..=+..+.++...|.+.+|+.++.+++..=++ -+..+||.++-++++.=-++ +-+.+...=..-|--
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYe 199 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYE 199 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHH
Confidence 111123345566777777777777766654333 56777777776666531111 111111111223444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC--ChhHHHHHHHHHHHhCCCCch-HHHHHHHHHHHh
Q 005476 193 MFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLA--DIELGGWISEYMEEKELNGNV-KLMTAVVDMYAK 269 (695)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~ 269 (695)
||..|.+.=.. ++.-.=..+.|....+..++....-.. .+.--.+++......-+.|+- -+...|+.-+.+
T Consensus 200 milfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~ 273 (549)
T PF07079_consen 200 MILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS 273 (549)
T ss_pred HHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc
Confidence 45444332111 111000123344444444444333222 222333444444444455542 233444444444
Q ss_pred cCCHHHHHHHHHhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005476 270 CGHVDKARRLFEQMN--------IKDVVAWSAMISGYSQARRCKEALGVFHDMQM 316 (695)
Q Consensus 270 ~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (695)
+.+++..+.+.+. ++=+.++..++...++.++..+|-+.+.-+..
T Consensus 274 --~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 274 --DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred --ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4444444444332 22345677778888888888888777766654
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.66 E-value=1.4 Score=45.85 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=91.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHH--hhcCCH
Q 005476 399 LASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDIL--GRAGLV 476 (695)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~ 476 (695)
--+..+...-+++-++..+ +.||-.+-..++ +-.....+.++.++|++..+. + ...+ .... ...|..
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~l---g~s~~~~~~g~~ 246 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASL---GKSQFLQHHGHF 246 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhh---chhhhhhcccch
Confidence 3445566677777777777 778776544443 334455678888888877653 1 0000 0000 011111
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 477 EEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPM--HSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 477 ~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.+.+.+-...|-..+=..|...+++.|+.++|++.++.+++..|. +......|+..|...+++.++..++.+-.+
T Consensus 247 ---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 247 ---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred ---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111111111222333355677788899999999999999987764 345677899999999999999999988765
Q ss_pred CCCccCCce
Q 005476 555 QGIKKTPGC 563 (695)
Q Consensus 555 ~~~~~~~~~ 563 (695)
....+....
T Consensus 324 i~lpkSAti 332 (539)
T PF04184_consen 324 ISLPKSATI 332 (539)
T ss_pred ccCCchHHH
Confidence 444444433
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.62 E-value=6.2 Score=40.54 Aligned_cols=91 Identities=9% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHhccCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 005476 76 SIFHKINE--PDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFG 153 (695)
Q Consensus 76 ~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 153 (695)
++=+++.+ .|..+|-.||.-|..+|..++..+++++|... ++--...|..-+++=....++.....+|.+.+...+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 44455542 47789999999999999999999999999763 222345677777766677889999999999888754
Q ss_pred CCccHHHHHHHHHHhc
Q 005476 154 CRQLVTNTLIHLYANC 169 (695)
Q Consensus 154 ~~~~~~~~Li~~y~~~ 169 (695)
+...|...++--.+.
T Consensus 108 -~ldLW~lYl~YIRr~ 122 (660)
T COG5107 108 -NLDLWMLYLEYIRRV 122 (660)
T ss_pred -cHhHHHHHHHHHHhh
Confidence 455666665544443
No 239
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.60 E-value=0.78 Score=43.12 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=76.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHh
Q 005476 394 VLIQCLASNGQGERALETYYIMREKNIE-PN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILG 471 (695)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 471 (695)
.....+.+.|++++|++.|+++...-.. |- ......+..++.+.|++++|...++..++.+.-.|... +...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 3445566778888888888888764211 11 22455667777788888888888888776654444321 111111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-----------------cHHHHHH
Q 005476 472 RAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG-----------------DYILLSD 534 (695)
Q Consensus 472 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~ 534 (695)
......... ......+....|...|+.+++..|++.. .-..++.
T Consensus 89 ~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000000 0112223344556666666666665532 2235788
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 005476 535 IYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 535 ~~~~~g~~~~a~~~~~~m~~~ 555 (695)
.|.+.|.+..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999998874
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.56 E-value=0.19 Score=47.76 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCHHHHHHHhccCC--CCCcchHHHHHHHHHcC-----CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc-------
Q 005476 69 TTMDYALSIFHKIN--EPDSSAYNIMIRAFTLK-----QSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRI------- 134 (695)
Q Consensus 69 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------- 134 (695)
..+-..++.|...+ ++|..+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+.
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH
Confidence 44555667788777 68888998888887543 56666677788999999999999999999887543
Q ss_pred ---------CChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC-hhHHHHHHhccC
Q 005476 135 ---------RALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGR-IDIARKMFDRMS 183 (695)
Q Consensus 135 ---------~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~~m~ 183 (695)
.+-+-+..++++|...|+.||..+-..|++++.+.+- ..+..++.-.|+
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2334578889999999999999999999999887765 334444444444
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.50 E-value=0.21 Score=51.56 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005476 460 MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPNP----VIWRTLLAACRAHKNVKVGEESLKNLVTL 521 (695)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 521 (695)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|++++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666666653 445543 24666666666777777777777776665
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=2.8 Score=39.36 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCcccHH
Q 005476 463 YGCMVDILGRAGLVEEAYQFIKNMP-------IPPNP-VIWRTLLAACRAHKNVKVGEESLKNLVTL----EPMHSGDYI 530 (695)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 530 (695)
|......|.+..++++|-..|.+-. --|+. ..+-+.+-.+....|+..|++.++.--+. +|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344455667777777665554431 11221 12333344455556777787777776553 355666666
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 005476 531 LLSDIYASAGRCEDALRVM 549 (695)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~ 549 (695)
.|+.+| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666665 456666665554
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=94.35 E-value=0.63 Score=48.21 Aligned_cols=117 Identities=10% Similarity=0.070 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcC
Q 005476 439 MVDEGRELFVSMSRDFDLEPR-MEHYGCMVDILGR---------AGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHK 506 (695)
Q Consensus 439 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g 506 (695)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788889888754466776 3445444433321 22344556665554 3344 6777777777777888
Q ss_pred ChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 507 NVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
+++.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999986654
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.28 E-value=2.7 Score=36.64 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=46.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChh
Q 005476 125 ACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWR 204 (695)
Q Consensus 125 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 204 (695)
..++..+...+........++.+.+.+ ..+....|.|+..|++.+ ..+....++. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 345555555556666666666666665 355666777777776653 2333344431 123334444555555666666
Q ss_pred HHHHHHHHH
Q 005476 205 EIVDLFNEM 213 (695)
Q Consensus 205 ~A~~~~~~m 213 (695)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 666555554
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.16 E-value=0.089 Score=32.79 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVTLEPM 524 (695)
Q Consensus 493 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 524 (695)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888875
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.12 E-value=5.2 Score=37.60 Aligned_cols=160 Identities=21% Similarity=0.165 Sum_probs=106.1
Q ss_pred HhHHhcchhhcCCHHHHHHHHhcCCC--C-ChhHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 005476 361 GTALMDFYAKCGLIENAVEVFKKMPL--K-NVFFWTVLIQ-CLASNGQGERALETYYIMREKNIEP----NDVAFIAVLS 432 (695)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~ 432 (695)
+..+...+...+....+.+.+..... + +...+..... .+...|++++|...|.+... ..| ....+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhh
Confidence 33344444444555555555555433 1 1122222233 67888999999999998855 444 2334444444
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChh
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVK 509 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~ 509 (695)
.+...++.+.+...+..... .... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...++.+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 176 LLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH
Confidence 56778899999999988864 2333 4677888888899999999999888876 33444 445555555555777899
Q ss_pred HHHHHHHHHHhcCCC
Q 005476 510 VGEESLKNLVTLEPM 524 (695)
Q Consensus 510 ~a~~~~~~~~~~~p~ 524 (695)
.+...+.+.++..|.
T Consensus 254 ~~~~~~~~~~~~~~~ 268 (291)
T COG0457 254 EALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999998886
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.05 E-value=0.5 Score=49.95 Aligned_cols=134 Identities=17% Similarity=0.217 Sum_probs=88.9
Q ss_pred HHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 005476 397 QCLASNGQGERALETYYIMR-EKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGL 475 (695)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 475 (695)
.....+|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-. .-.++..++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCC
Confidence 34456788888777665111 11122 3346677777788888888887643322 23566778999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 476 VEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 476 ~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
++.|.++.++.. +...|..|......+|+++.|++.+++. .-+..|+-+|...|+.+.-.++-+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887763 7889999999999999999999999986 35677888899999988777777766665
Q ss_pred C
Q 005476 556 G 556 (695)
Q Consensus 556 ~ 556 (695)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 5
No 248
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.97 E-value=2.2 Score=47.62 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=34.8
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 005476 85 DSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIR 135 (695)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 135 (695)
+...| .+|--+.|.|++++|.++....... .......|...++.+....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 34457 4677788999999999999665543 5556677888898887653
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.86 E-value=0.15 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46667777788888888888888888887764
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.80 E-value=5.5 Score=46.02 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccccHHHHHHHH
Q 005476 372 GLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSAC----SHVGMVDEGRELF 447 (695)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~ 447 (695)
+++++|+.-+.++. ...|+-.+.---++|.+.+|+.++ +|+...+..+..+| ...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45566665555543 223333444444556666655553 44544444333332 2334444444444
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHH
Q 005476 448 VSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVI--WRTLLAACRAHKNVKVGEESLKNL 518 (695)
Q Consensus 448 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~ll~a~~~~g~~~~a~~~~~~~ 518 (695)
+..-+ ..--+.+|-.+|+|.+|+.+-.++....|... -..|.+-+..+++.-+|-++....
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 33311 01123444555555555555555533223222 134445555555544444444333
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.76 E-value=0.49 Score=45.32 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCCh-hHHHH
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMREKNIEPND----VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRM-EHYGC 465 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 465 (695)
.|+.-+. +.+.|++.+|...|...++.. |+. ..+-.|..++...|+++.|..+|..+.++++-.|.. +.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3555444 345677888888888888742 332 255667888888888888888888888776655543 66666
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 005476 466 MVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~m 486 (695)
|.....+.|+.++|..++++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 667777777777777766665
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.67 E-value=1.1 Score=44.44 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHchhhcCCCC----ChhHH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMRE-KNIEPND---VAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP----RMEHY 463 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~ 463 (695)
|-.+..++.+.-++.+++.+-+.-.. .|..|.. ....++-.+....+.++++.+.|+...+--.-.. ...+|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 44444444444444444444333221 1223311 1233345556666667777777776643211111 23467
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHHHhcC--CCCc---
Q 005476 464 GCMVDILGRAGLVEEAYQFIKNM-------PIPPNPVIWR-----TLLAACRAHKNVKVGEESLKNLVTLE--PMHS--- 526 (695)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~--- 526 (695)
..|...|++..++++|.-+..+. +++.-..-|. -+.-+++..|....|.+.-+++.++- ..|.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777777765544432 2221111122 23345677777777777777665532 2222
Q ss_pred -ccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 527 -GDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 527 -~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
.....++++|...|+.|.|..-++.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2334677777777777766655544
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=3 Score=40.49 Aligned_cols=121 Identities=16% Similarity=0.129 Sum_probs=82.6
Q ss_pred HHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHH---HHHHHHhcCChh
Q 005476 433 ACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRT---LLAACRAHKNVK 509 (695)
Q Consensus 433 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~~ 509 (695)
.....|++.++..+|+..... ..-+...--.|+..|...|+.++|..++..+|..-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 445678888888888877642 223456666788888889999999999988865544444433 222233333333
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 510 VGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
+... +++-...+|+|...-..|+..|...|+.++|.+.+=.+..++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3222 334456689998889999999999999999998877776643
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.48 E-value=0.58 Score=41.25 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHchh----hcCCCCChhH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEP-NDVAFIAVLSACSHVGMVDEGRELFVSMSR----DFDLEPRMEH 462 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 462 (695)
...++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566677777777777777777 455 344777777777777777777777765532 3566666544
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.31 E-value=2 Score=45.56 Aligned_cols=155 Identities=14% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHcCCCchHHHHHHH--HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChh
Q 005476 96 FTLKQSPQEAVMLYK--TMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRID 173 (695)
Q Consensus 96 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 173 (695)
..-+++++++.+... ++.. .++ ..-...++.-+-+.|..+.|.++-..- ..-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHH
Confidence 345667777665554 1111 122 334667777777778777777654332 22345567888888
Q ss_pred HHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 005476 174 IARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKEL 253 (695)
Q Consensus 174 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 253 (695)
.|.++.++.. +...|..|.....+.|+.+-|.+.|.+..+ |..++-.+...|+.+.-.++.......|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8888877665 455888888888889999888888888654 45555566666777666666666665541
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005476 254 NGNVKLMTAVVDMYAKCGHVDKARRLFEQ 282 (695)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 282 (695)
+|....++...|++++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344445555666666665544
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.08 E-value=5.5 Score=34.64 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh
Q 005476 393 TVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGR 472 (695)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 472 (695)
..+|..+.+.+.......+++.+...+ ..+...++.++..+++.. .++..+.+.. .++.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555555556666666666655554 234445555555555432 2233333331 0111222234455555
Q ss_pred cCCHHHHHHHHHhCC
Q 005476 473 AGLVEEAYQFIKNMP 487 (695)
Q Consensus 473 ~g~~~~A~~~~~~m~ 487 (695)
.+.++++.-++.+++
T Consensus 82 ~~l~~~~~~l~~k~~ 96 (140)
T smart00299 82 AKLYEEAVELYKKDG 96 (140)
T ss_pred cCcHHHHHHHHHhhc
Confidence 555555555555553
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.06 E-value=8.6 Score=39.39 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCC---Cee-hHH---HHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005476 160 NTLIHLYANCGRIDIARKMFDRMSNR---DVF-SWN---SMFSGYVK---TECWREIVDLFNEMRDLGVKFDEVTLINVL 229 (695)
Q Consensus 160 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~-~~~---~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 229 (695)
-.|+-.|....+++...++++.++.. +.. +-+ ...-++.+ .|+.++|++++..+......++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444688888888888888888663 111 111 22334445 788889999888866666667777776666
Q ss_pred HHH
Q 005476 230 MAC 232 (695)
Q Consensus 230 ~a~ 232 (695)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 554
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=7.8 Score=37.80 Aligned_cols=172 Identities=10% Similarity=0.068 Sum_probs=107.2
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHchhhcC
Q 005476 377 AVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFD 455 (695)
Q Consensus 377 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 455 (695)
..+.++++..+....--.........|++.+|..+|+...+. .|+ ...-..+..++...|+++.|..++..+-.+
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-- 197 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-- 197 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc--
Confidence 344444444332222222334566789999999999998883 443 345566788889999999999999887542
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcccHHH
Q 005476 456 LEPR-MEHYGCMVDILGRAGLVEEAYQFIKNMPIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLE--PMHSGDYIL 531 (695)
Q Consensus 456 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~ 531 (695)
..-+ ......-+..+.+.....+...+-.+..-.| |...--.+...+...|+.+.|.+.+=.+++.+ -.|...--.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 1111 1122334566666666665555555554456 55555667777888999999988887777754 445556667
Q ss_pred HHHHHHHcCCHH-HHHHHHHHH
Q 005476 532 LSDIYASAGRCE-DALRVMNQM 552 (695)
Q Consensus 532 l~~~~~~~g~~~-~a~~~~~~m 552 (695)
|+.++.-.|.-+ .+.+.+++|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 777776666433 333444433
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.84 E-value=2.8 Score=36.24 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHhcCCCCc
Q 005476 508 VKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~ 526 (695)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5577888888888888764
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=2.8 Score=41.17 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=87.0
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHhccccHHHH
Q 005476 371 CGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVA--FI--AVLSACSHVGMVDEG 443 (695)
Q Consensus 371 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~--~ll~a~~~~g~~~~a 443 (695)
.|++.+|-..++++.+ .|..+|+-.=.++..+|+.+.-...+++.... ..||... |. .+.-+....|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4666666666666654 36677777777777778777777777776653 2444432 22 222234566777777
Q ss_pred HHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC-----CHhhHHHHHHHHHhcCChhHHHHHH
Q 005476 444 RELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNMPI--PP-----NPVIWRTLLAACRAHKNVKVGEESL 515 (695)
Q Consensus 444 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p-----~~~~~~~ll~a~~~~g~~~~a~~~~ 515 (695)
.+.-++.. .+.| |...-.++...+.-.|+..++.++..+-.- +. .-.-|..- -.+...+.++.|+++|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHHH
Confidence 77776664 3333 455556667777777888888777766521 10 00111111 1223446777777777
Q ss_pred HHHH--hcCCCCc
Q 005476 516 KNLV--TLEPMHS 526 (695)
Q Consensus 516 ~~~~--~~~p~~~ 526 (695)
++=+ +++.+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 6543 3444444
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.66 E-value=17 Score=39.15 Aligned_cols=158 Identities=13% Similarity=-0.000 Sum_probs=98.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHh-----HHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchHHH
Q 005476 191 NSMFSGYVKTECWREIVDLFNEMRDL-GVKFDEV-----TLINVLMACGR----LADIELGGWISEYMEEKELNGNVKLM 260 (695)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~-----t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 260 (695)
..+++...=.|+-+.+++++.+-.+. |+.-... +|..++..+.. ..+.+.+.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555566678888888888876543 2322221 24444444433 34677788888888876 4544443
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 005476 261 -TAVVDMYAKCGHVDKARRLFEQMNIK-------DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSC 332 (695)
Q Consensus 261 -~~li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 332 (695)
-.-...+...|++++|.+.|+..... ....+--+...+.-..+|++|.+.|..+.+.. .-...+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 33446677889999999999975421 22334445566778899999999999998764 3344455555444
Q ss_pred H-hccCCh-------hHHHHHHHHHHH
Q 005476 333 C-AVLGAL-------ETGKWVHLYVKK 351 (695)
Q Consensus 333 ~-~~~~~~-------~~a~~i~~~~~~ 351 (695)
| ...++. ++|..++..+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 345555 666666665543
No 262
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.52 E-value=21 Score=39.99 Aligned_cols=207 Identities=9% Similarity=0.030 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHHHH-cCCCchHHHHHHHHHHhC
Q 005476 37 NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFT-LKQSPQEAVMLYKTMLQN 115 (695)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 115 (695)
.+-|..+....-+.+...|-.||.+-.+| ++.+.+-+.--|+.+..++--+...+. ...++++|...+++....
T Consensus 15 ~~A~~~~~~~~~~~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l 89 (608)
T PF10345_consen 15 EKAHSLATKVKSEEQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILL 89 (608)
T ss_pred HHhHHHHHhcCChhhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444444444455677788888888777 555544222223334556666666665 578899999998877553
Q ss_pred CCCCChh-----hHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CC--ccHHHHH-HHHHHhcCChhHHHHHHhccCC-
Q 005476 116 SVEPDRF-----TFACTLKACSRIRALEEGEQIHAQILKSGFG--CR--QLVTNTL-IHLYANCGRIDIARKMFDRMSN- 184 (695)
Q Consensus 116 g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~L-i~~y~~~g~~~~A~~~f~~m~~- 184 (695)
.-+++-. .-..+++.+.+.+... |....+..++.--. .. ...+.-+ +..+...++...|.+.++.+..
T Consensus 90 ~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 90 CERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3222211 1223345455544444 88777776654211 11 2222333 3333334788888888876643
Q ss_pred ------CCeehHHHHHHHHH--hCCChhHHHHHHHHHHHcCC---------CCCHhHHHHHHHHHh--ccCChhHHHHHH
Q 005476 185 ------RDVFSWNSMFSGYV--KTECWREIVDLFNEMRDLGV---------KFDEVTLINVLMACG--RLADIELGGWIS 245 (695)
Q Consensus 185 ------~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~pd~~t~~~ll~a~~--~~~~~~~a~~~~ 245 (695)
+-+...-.++.+.. +.+..+++++.++++..... .|-..+|..+++.++ ..|+++.+.+.+
T Consensus 169 a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L 248 (608)
T PF10345_consen 169 ANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKL 248 (608)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11222233333333 45666777777777633221 223344666666554 446655666555
Q ss_pred HHHH
Q 005476 246 EYME 249 (695)
Q Consensus 246 ~~~~ 249 (695)
..+.
T Consensus 249 ~~lq 252 (608)
T PF10345_consen 249 KQLQ 252 (608)
T ss_pred HHHH
Confidence 4443
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.36 E-value=11 Score=39.52 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=30.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHhccccHHHHHHHHHHc
Q 005476 395 LIQCLASNGQGERALETYYIMREKNIEP-ND-VAFIAVLSACSHVGMVDEGRELFVSM 450 (695)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 450 (695)
+..+..+.|+.++|++.|++|.+.. ++ |. .....|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4445556666666666666665421 11 11 24445666666666666666665554
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.34 E-value=5.7 Score=42.69 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=76.5
Q ss_pred cccHHHHHHHHHHchhhcCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhCCC------CCCHhhHHHHHHHHHhcCChh
Q 005476 437 VGMVDEGRELFVSMSRDFDLEPRMEHYG-CMVDILGRAGLVEEAYQFIKNMPI------PPNPVIWRTLLAACRAHKNVK 509 (695)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~ 509 (695)
....+.+.++++.+.+. -|+...|. --...+...|++++|.+.|++.-. ......+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45677788888888653 35544443 234556677888888888886410 011223334556677888999
Q ss_pred HHHHHHHHHHhcCCCCcccHH-HHHHHHHHcCCH-------HHHHHHHHHHHh
Q 005476 510 VGEESLKNLVTLEPMHSGDYI-LLSDIYASAGRC-------EDALRVMNQMRE 554 (695)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 554 (695)
+|.+.+.++.+...-+...|. ..+-+|...|+. ++|.+++.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999987654444554 455566778888 888888887765
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=1.1 Score=43.83 Aligned_cols=159 Identities=12% Similarity=0.041 Sum_probs=114.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHH----HHHHhhcCCH
Q 005476 401 SNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCM----VDILGRAGLV 476 (695)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 476 (695)
-+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888998999998874 555667888788899999999999999988875 446666555443 4445689999
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CcccHHHHHHHHHHcCCHHHHHHHHH
Q 005476 477 EEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPM----HSGDYILLSDIYASAGRCEDALRVMN 550 (695)
Q Consensus 477 ~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (695)
++|++.-++. .+.| |.-.-.++.......|+..++.+...+--..-.. -.-.|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998886 4444 4444456666677888999998887765432221 12245566666778899999999999
Q ss_pred HHHhCCCccCCc
Q 005476 551 QMREQGIKKTPG 562 (695)
Q Consensus 551 ~m~~~~~~~~~~ 562 (695)
.=.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876555555554
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.04 E-value=4.8 Score=37.15 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=101.6
Q ss_pred CCHHHHHHHHhcCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 005476 372 GLIENAVEVFKKMP--LK-NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELF 447 (695)
Q Consensus 372 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 447 (695)
|-..-|+--|.+.. .| -+..||-+.--+...|+++.|.+.|+...+ +.|... ++..-.-++--.|+++-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44444444444332 23 345678777778888999999999988887 555432 3332223445568888887766
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-
Q 005476 448 VSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFI-KNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH- 525 (695)
Q Consensus 448 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~- 525 (695)
...-+.-.-.|-...|--+ -.+.-++.+|..-+ ++. ...|..-|...|-.+.- |++. -+.+++++.+-..++
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence 5554321222222223222 22344666665433 333 23455666665554422 2111 123344443322222
Q ss_pred ------cccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 526 ------SGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 526 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
..+|.-|+.-|...|+.++|..+|+.....++
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35889999999999999999999998876544
No 267
>PRK09687 putative lyase; Provisional
Probab=91.90 E-value=14 Score=36.58 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCH----HHHHHHHHHhHHCCCCCCHHHHHHHH
Q 005476 255 GNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRC----KEALGVFHDMQMANVVPNEVTMVSVL 330 (695)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~t~~~ll 330 (695)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .||...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444445555554433222222222334444444455555555542 3456666655332 34444444444
Q ss_pred HHHhcc
Q 005476 331 SCCAVL 336 (695)
Q Consensus 331 ~a~~~~ 336 (695)
.++...
T Consensus 113 ~aLG~~ 118 (280)
T PRK09687 113 NATGHR 118 (280)
T ss_pred HHHhcc
Confidence 444443
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.84 E-value=12 Score=35.73 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 498 LLAACRAHKNVKVGEESLKNLVTLEPMHSG---DYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 498 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
+..-|.+.|.+..|..-++.+++.-|+.+. .+..+..+|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 445688999999999999999998765544 4557778899999999999988776653
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.83 E-value=14 Score=36.54 Aligned_cols=17 Identities=18% Similarity=-0.089 Sum_probs=9.9
Q ss_pred HHhcCChhHHHHHHHHH
Q 005476 502 CRAHKNVKVGEESLKNL 518 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~ 518 (695)
+.+.++++.|.+.++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44556666666666544
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.64 E-value=13 Score=35.58 Aligned_cols=141 Identities=14% Similarity=0.183 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMREKN-IEP-NDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVD 468 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 468 (695)
.|-.-+..-.+.|++++|.+.|+.+..+. ..| ...+...++-++-+.+++++|....++..+.++-.|++. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 33334444456677777777777776532 111 233555566666677777777777777766555555543 222333
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-----------------cHH
Q 005476 469 ILGRAGLVEEAYQFIKNMP-IPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG-----------------DYI 530 (695)
Q Consensus 469 ~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~ 530 (695)
+++ .|...+ ...|. .-...|...|+.+++.-|++.. .=.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 332 111110 00011 1123444555555555555422 123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 531 LLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
.+++-|.+.|.|.-|..-+++|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 6788899999999999999999885
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.40 E-value=0.39 Score=30.40 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005476 528 DYILLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
+|..|+++|.+.|+|++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998854
No 272
>PRK09687 putative lyase; Provisional
Probab=91.25 E-value=17 Score=36.09 Aligned_cols=132 Identities=8% Similarity=-0.082 Sum_probs=66.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 005476 191 NSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLA-DIELGGWISEYMEEKELNGNVKLMTAVVDMYAK 269 (695)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 269 (695)
-..+.++.+.++ ++++..+-.+.+ .+|...-...+.+++..+ +...+...+..+. -.++..+....+.++.+
T Consensus 146 ~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 146 FAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHc
Confidence 344444444444 344455444443 233333333334444332 1122333333322 24466666677777777
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHh
Q 005476 270 CGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCA 334 (695)
Q Consensus 270 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 334 (695)
.|+.+..-.+.+.+..++ ..-..+.++.+.|.. +|+..+.++... .||...-...+.+|.
T Consensus 219 ~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 219 RKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred cCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777443333334444333 233566777777775 677777777754 356666555555553
No 273
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=28 Score=38.48 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHH
Q 005476 419 NIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTL 498 (695)
Q Consensus 419 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 498 (695)
|..-...|.+--+.-+...|...+|.++-.+.. -||-..|.-=+.+++..+++++-+++-+++. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 333444466666777788899999998877663 3888888888999999999999998888763 24557778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 499 LAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 499 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
..+|.+.|+.++|.+.+.+.-. +.-...+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999988877632 22577889999999999877543
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.73 E-value=22 Score=36.56 Aligned_cols=149 Identities=10% Similarity=-0.012 Sum_probs=74.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC--hh
Q 005476 387 KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP---NDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR--ME 461 (695)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 461 (695)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567778888888888888888888877643111 1222222233444567777777777766541 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHhhHHHHHHHHHh------cCChhHHHHHHHHHHhcCCCCcccHHHHHH
Q 005476 462 HYGCMVDILGRAGLVEEAYQF-IKNMPIPPNPVIWRTLLAACRA------HKNVKVGEESLKNLVTLEPMHSGDYILLSD 534 (695)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (695)
....+...+.. ..+..... ........-...+..+..-+.. .++.+.+...++.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001122222222333 377888899999999999887777777766
Q ss_pred HHHH
Q 005476 535 IYAS 538 (695)
Q Consensus 535 ~~~~ 538 (695)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6543
No 275
>PRK15331 chaperone protein SicA; Provisional
Probab=90.57 E-value=2 Score=38.05 Aligned_cols=83 Identities=8% Similarity=-0.060 Sum_probs=32.7
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHH
Q 005476 97 TLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIAR 176 (695)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 176 (695)
...|++++|..+|.-+...+.. |..-+..|..++-..++++.|...+......+ ..|+...-....+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3444555555555444432211 12222222222333344444544444444333 123333333334444444444444
Q ss_pred HHHhc
Q 005476 177 KMFDR 181 (695)
Q Consensus 177 ~~f~~ 181 (695)
..|+.
T Consensus 126 ~~f~~ 130 (165)
T PRK15331 126 QCFEL 130 (165)
T ss_pred HHHHH
Confidence 44443
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.31 E-value=10 Score=32.10 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 005476 290 AWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRM 354 (695)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 354 (695)
..+..+...++.|.-+.--+++.++... -.+++.....+..||.+.|+..++..++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445566777888888877888777653 367777777888888888888888888888777774
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.03 E-value=0.54 Score=29.07 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTLEPM 524 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 524 (695)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777788888877777777763
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.96 E-value=6.3 Score=39.33 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhccCC--hhHHHHHHHHHHHhCCCCchHHHHHH
Q 005476 204 REIVDLFNEMRDLGVKFDEVT--LINVLMACGRLAD--IELGGWISEYMEEKELNGNVKLMTAV 263 (695)
Q Consensus 204 ~~A~~~~~~m~~~g~~pd~~t--~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 263 (695)
+.+..+|+.+.+.|+..+... .+.++..+....+ ...+..+++.+.+.|++.....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 455667777777676654432 3334433333322 23566677777777776655555444
No 279
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.91 E-value=1.1 Score=40.65 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=66.0
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC------CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCC
Q 005476 469 ILGRAGLVEEAYQFIKNM-PIPP------NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGR 541 (695)
Q Consensus 469 ~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (695)
-+.+.|++++|..-|.+. ..-| -.+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777776666553 1111 233455555667888999999999999999999777777777889999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 005476 542 CEDALRVMNQMREQGI 557 (695)
Q Consensus 542 ~~~a~~~~~~m~~~~~ 557 (695)
+++|+.-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987543
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.46 E-value=1.6 Score=42.57 Aligned_cols=61 Identities=26% Similarity=0.383 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
++..++.++...|+++.+...++++++.+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566666667777777777777777777777777777777777777777777777654
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.39 E-value=0.63 Score=29.42 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTL 521 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 521 (695)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
No 282
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.33 E-value=73 Score=40.48 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=55.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 492 PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 492 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
..+|-.....++..|.++.|....-.+.+..+ +..+...+......|+-..|+.++++..+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46798999999999999999999988888775 4689999999999999999999999988654
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.28 E-value=2.4 Score=35.63 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=44.5
Q ss_pred HhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH---hhHHHHHHHHHhcC
Q 005476 434 CSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM----PIPPNP---VIWRTLLAACRAHK 506 (695)
Q Consensus 434 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~---~~~~~ll~a~~~~g 506 (695)
.+..|+++.|++.|.+.+. -.+.....||.-..+|--+|+.++|++-+++. +-+ .. ..|-.-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4455555555555555542 12224455555555555566666655555443 111 11 12222233466677
Q ss_pred ChhHHHHHHHHHHhcCC
Q 005476 507 NVKVGEESLKNLVTLEP 523 (695)
Q Consensus 507 ~~~~a~~~~~~~~~~~p 523 (695)
+.+.|..-|+.+-+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777766666553
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.82 E-value=17 Score=32.56 Aligned_cols=134 Identities=9% Similarity=0.061 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchH-HHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 005476 207 VDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVK-LMTAVVDMYAKC-GHVDKARRLFEQMN 284 (695)
Q Consensus 207 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~-g~~~~A~~~f~~m~ 284 (695)
++.++.+.+.++.|+...+..++..+.+.|.+..- ..++..++-+|.. +-..|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45666677788888888888888888888876543 3334445444433 333333221111 01233444444443
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 005476 285 IKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKK 352 (695)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 352 (695)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24556677888999999999988775322 2222345677777777766666666655553
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.80 E-value=14 Score=32.66 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=55.9
Q ss_pred HHHHHhccccHHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCC
Q 005476 430 VLSACSHVGMVDEGRELFVSMSRDFDLEPRM-EHYGCMVDILGRAGLVEEAYQFIKNMP-IPPNPVIWRTLLAACRAHKN 507 (695)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~a~~~~g~ 507 (695)
+++.-...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-..|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3344455667777877777774 455643 333334455677888888888888873 23444445667766666555
Q ss_pred hhHHHHHHHHHHhcCC
Q 005476 508 VKVGEESLKNLVTLEP 523 (695)
Q Consensus 508 ~~~a~~~~~~~~~~~p 523 (695)
-..=....+++++.++
T Consensus 93 D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA 108 (160)
T ss_pred ChHHHHHHHHHHhcCC
Confidence 4555555666666654
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=17 Score=40.57 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=68.5
Q ss_pred hcchhhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH
Q 005476 365 MDFYAKCGLIENAVEVFKKMPL-KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEG 443 (695)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 443 (695)
.+-+.+.|++++|...|-+-.. -++ ..+|.-|....+..+-..+++.+.+.|+.-...| ..||.+|.+.++.++-
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHH
Confidence 3444456666666665543321 111 1234455555555555566666666665433222 2356666666666666
Q ss_pred HHHHHHchhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 005476 444 RELFVSMSRDFDLE-PRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNL 518 (695)
Q Consensus 444 ~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 518 (695)
.++.+.-. + |.- -|. ...+..+.+.+-+++|..+-.+.+. .......+ +-..+|+++|.+.++.+
T Consensus 451 ~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAELLATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 65554432 1 211 122 2345555566666666655555432 22222222 23345666666655543
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.08 E-value=1.1 Score=27.65 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005476 390 FFWTVLIQCLASNGQGERALETYYIMREKNIEPN 423 (695)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (695)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4577788888888888888888888887 5665
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.03 E-value=2.3 Score=37.45 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=36.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 503 RAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
...++.+.++.++..+.-+.|..+..-..-+..+...|+|.+|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 455666777777777777777666666666666777777777777777765543
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.91 E-value=2.3 Score=36.85 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=45.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005476 503 RAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
...++.+.++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3478888888888888888888888888888888888999999998888877653
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.68 E-value=4 Score=39.90 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHH-----CCCCCCHHHHHH
Q 005476 257 VKLMTAVVDMYAKCGHVDKARRLFEQMNIK---DVVAWSAMISGYSQARRCKEALGVFHDMQM-----ANVVPNEVTMVS 328 (695)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ 328 (695)
..++..++..+..+|+.+.+.+.++++... |...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456788899999999999999999988643 678999999999999999999999998865 477777665544
Q ss_pred HHHH
Q 005476 329 VLSC 332 (695)
Q Consensus 329 ll~a 332 (695)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 291
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.64 E-value=1.6 Score=29.00 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMREKNIEPNDV 425 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 425 (695)
.|..+...|.+.|++++|+++|++..+ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777888888888888888877 566554
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.52 E-value=15 Score=37.69 Aligned_cols=66 Identities=15% Similarity=0.308 Sum_probs=56.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 490 PNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEP----MHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 490 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
....+|..+...++++|+++.|...+.++...++ ..+.....-+......|+.++|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999998652 24567777899999999999999999888873
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=27 Score=33.11 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHh
Q 005476 89 YNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYAN 168 (695)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 168 (695)
|.--..+|....++++|...+.+..+ +.+-|..-|. ..+ .+++|.-+..++.+. +.-+..++.-..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-AAK------ayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-AAK------AYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-HHH------HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33344556667777777776666553 1222222221 112 244455555555443 2223456666778888
Q ss_pred cCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 005476 169 CGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMR 214 (695)
Q Consensus 169 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 214 (695)
+|..+.|-..+++.- -..++.++++|+++|++-.
T Consensus 104 ~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAA------------KALENVKPDDALQLYQRAL 137 (308)
T ss_pred hCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHH
Confidence 888877766665431 1234455666666666643
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=2.1 Score=41.65 Aligned_cols=100 Identities=17% Similarity=0.303 Sum_probs=64.0
Q ss_pred cCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCC-C------CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 005476 47 RFHLNPTISENLLEAAAILIPATTMDYALSIFHKINE-P------DSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEP 119 (695)
Q Consensus 47 g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 119 (695)
|.+....+-..++..-... .+++++...+-+... | +... .+.++-+. .-++++++.++..-.+.|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~---~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSR---EEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccc---cchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 4444555555555554444 677777777655532 2 2111 12222222 236778888888888888888
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005476 120 DRFTFACTLKACSRIRALEEGEQIHAQILKSG 151 (695)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 151 (695)
|.+++..+|+.+.+.+++..|.++...|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777776654
No 295
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.86 E-value=32 Score=33.53 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 497 TLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 497 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.....|...|.+.+|.++.+++++++|-+...+-.|...|+..|+--.|.+-++++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445689999999999999999999999999999999999999998888888888754
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.85 E-value=7.4 Score=35.51 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC------hhH
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMREKNIEPNDV--AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR------MEH 462 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 462 (695)
.+..+..-|.+.|+.++|++.|.++++....|... .+..++..+...+++..+.....++.....-..| ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35556666777777777777777776655555544 4556666666667766666666555331111111 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 463 YGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
|..|. +...|++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 33332 23356777777766655
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.72 E-value=35 Score=33.81 Aligned_cols=60 Identities=7% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHH---HHHHHHhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHC
Q 005476 258 KLMTAVVDMYAKCGHVDK---ARRLFEQMNI--K-DVVAWSAMISGYSQARRCKEALGVFHDMQMA 317 (695)
Q Consensus 258 ~~~~~li~~~~~~g~~~~---A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (695)
.+...|+.+|...+..+. |.++.+.+.. + ....+-.-+..+.+.++.+++.+.+.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 345556666666555433 3334444321 1 2333333344444466677777777777654
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.39 E-value=52 Score=35.52 Aligned_cols=119 Identities=15% Similarity=-0.015 Sum_probs=58.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHH-H
Q 005476 426 AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMP--IPPNPVIWRTLLAA-C 502 (695)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a-~ 502 (695)
+|...+.--...|+.+...-+|+...- ...--.+.|--.+.-....|+.+-|..++.... ..|+......+-.+ +
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 555556555666666666666665532 111123334444444444466666655554431 11222211111122 3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHH
Q 005476 503 RAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDAL 546 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 546 (695)
-..||+..|..+++.+.+--|.....-..-++...+.|+.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 34567777777777766644544333334445555666666665
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.77 E-value=81 Score=37.12 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=58.9
Q ss_pred hhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 005476 369 AKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFV 448 (695)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (695)
-+.|.+.+|..++..=.++-...|.+...-+.+.+.+++|.-+|+..-+ ..-.+.+|...|+++++..+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3445555555555433333333444444555556666666666654321 1224566677777777777776
Q ss_pred HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 449 SMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 449 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 6632 11112233356666777777777777776665
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.15 E-value=2.3 Score=26.04 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMREKNIEPN 423 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (695)
.|..+...|.+.|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456677778888888888888888776 5554
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.99 E-value=42 Score=32.28 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHhcCC----C---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHH---CCCC--CCHHHHHHHHHHHhccCC
Q 005476 271 GHVDKARRLFEQMNI----K---DVVAWSAMISGYSQARRCKEALGVFHDMQM---ANVV--PNEVTMVSVLSCCAVLGA 338 (695)
Q Consensus 271 g~~~~A~~~f~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--pd~~t~~~ll~a~~~~~~ 338 (695)
.+.++|+.-|.++.+ + ..-+...||..+.+.|++++.+..|++|.. ..+. -...+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666665432 1 223445567777777888877777777742 1122 233456677766665555
Q ss_pred hhHHHHHHHHHHHh-----CCCCchHHHhHHhcchhhcCCHHHHHHHHhcCCC--------CC-------hhHHHHHHHH
Q 005476 339 LETGKWVHLYVKKK-----RMELTITLGTALMDFYAKCGLIENAVEVFKKMPL--------KN-------VFFWTVLIQC 398 (695)
Q Consensus 339 ~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 398 (695)
.+.-...++--.+. +-..--.+-+-|...|...|.+..-.+++.++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55554444432221 1011112334566677777777777777776632 11 2457777888
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----ccccHHHHHHHHHHchhhcCCCCC-----hhHHHHHH
Q 005476 399 LASNGQGERALETYYIMREKN-IEPNDVAFIAVLSACS-----HVGMVDEGRELFVSMSRDFDLEPR-----MEHYGCMV 467 (695)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li 467 (695)
|...++-.+-..+|++...-. --|-+ ....+|+-|. +.|.+++|..-|-++.+.|.-.-+ .--|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888766522 22333 3445566664 457788876544444444433222 22355666
Q ss_pred HHHhhcCC----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 005476 468 DILGRAGL----VEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEE 513 (695)
Q Consensus 468 ~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~ 513 (695)
.++.+.|- -.+|.- ....|.......|+.+|.. ++..+-++
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~ 324 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFER 324 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 77766651 122210 0124556677888888854 34444333
No 302
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.76 E-value=82 Score=35.49 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=60.6
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 005476 402 NGQGERALETYYIMREK-NIEPNDV--AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEE 478 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 478 (695)
..+.+.|..++.+.... +..+... ....+.......+...++...++..... ..+.....--+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888776443 2333332 2223322222222245566666554321 1233334444445557888888
Q ss_pred HHHHHHhCCCCC-CHhhHHH-HHHHHHhcCChhHHHHHHHHHH
Q 005476 479 AYQFIKNMPIPP-NPVIWRT-LLAACRAHKNVKVGEESLKNLV 519 (695)
Q Consensus 479 A~~~~~~m~~~p-~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~ 519 (695)
+...+..|+..- +...|.- +..+....|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888874211 1222222 3444455788888888888874
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.75 E-value=8 Score=27.02 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCceeEEEECCEEEEeecCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 005476 529 YILLSDIYASAGRCEDALRVMNQMREQGIKKTPGCSLIELDGEIYEFLAEDNMCPHFKEVYDATENMMKRIKSAGY 604 (695)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 604 (695)
...++-++.+.|++++|.+..+.+.+. .|...++.+.-..+.++|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 446777899999999999999998873 34556666666667777777773
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.75 E-value=20 Score=31.98 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=9.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 005476 263 VVDMYAKCGHVDKARRLFEQM 283 (695)
Q Consensus 263 li~~~~~~g~~~~A~~~f~~m 283 (695)
|.-+-.+.|++.+|.+.|.++
T Consensus 173 LglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HhHHHHhccchHHHHHHHHHH
Confidence 333334444444444444444
No 305
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.60 E-value=46 Score=33.57 Aligned_cols=123 Identities=12% Similarity=0.009 Sum_probs=66.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhC-----CCCchHHHhHHhcchhhcCCHHHHHHHHhc-------CCCCChh-----
Q 005476 328 SVLSCCAVLGALETGKWVHLYVKKKR-----MELTITLGTALMDFYAKCGLIENAVEVFKK-------MPLKNVF----- 390 (695)
Q Consensus 328 ~ll~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-------~~~~~~~----- 390 (695)
++-.+....+.++.+.+.|+.+.+.- ......++.+|...|.+..++++|.-+... ..-.|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556666677777777776665521 112345677777777777777766543332 2223322
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHc
Q 005476 391 -FWTVLIQCLASNGQGERALETYYIMRE----KNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSM 450 (695)
Q Consensus 391 -~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 450 (695)
+.-.|.-++...|+..+|.+.-++..+ .|-+|... ....+...|...|+.+.|+.-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122234456666766666666665433 33333222 3344555566667766666665554
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.46 E-value=2.4 Score=41.67 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=76.9
Q ss_pred HHHHhccccHHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcC
Q 005476 431 LSACSHVGMVDEGRELFVSMSRDFDLEP-RMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPN---PVIWRTLLAACRAHK 506 (695)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~---~~~~~~ll~a~~~~g 506 (695)
.+-|.+.|.+++|+..|.... .+.| +.+.+..-..+|.+..++..|+.-.+.. +..| ...|.--+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHh
Confidence 456889999999999998775 4556 7888888888999999998887665554 1112 223444444555668
Q ss_pred ChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHH
Q 005476 507 NVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALR 547 (695)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 547 (695)
+..+|.+-++.+++++|++. -|-..|++.....++.-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKI 216 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhH
Confidence 88999999999999999853 34445555555444433
No 307
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.06 E-value=6.7 Score=33.30 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHh-cCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 507 NVKVGEESLKNLVT-LEPMHSGD-YILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 507 ~~~~a~~~~~~~~~-~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
+.++++.+++.+.+ -.|....- ..-|+-.+.+.|++++++++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 45667777777775 33433322 23455567777777777777776665
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.50 E-value=7.6 Score=30.78 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 005476 404 QGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVD 468 (695)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 468 (695)
+.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4446677777777888999999999999999999999999999998864333 34456666553
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.30 E-value=14 Score=33.79 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccCC
Q 005476 159 TNTLIHLYANCGRIDIARKMFDRMSN 184 (695)
Q Consensus 159 ~~~Li~~y~~~g~~~~A~~~f~~m~~ 184 (695)
+..+.+.|.+.|+.+.|.+.|.++.+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34444555555555555555544443
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.24 E-value=46 Score=31.47 Aligned_cols=21 Identities=0% Similarity=-0.083 Sum_probs=12.3
Q ss_pred HhcCChhHHHHHHHHHHhcCC
Q 005476 503 RAHKNVKVGEESLKNLVTLEP 523 (695)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p 523 (695)
...+++.+|+.+|+++....-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344566666666666655433
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.17 E-value=8.7 Score=30.82 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 005476 406 ERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVD 468 (695)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 468 (695)
-+..+-++.+....+-|++....+.|.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35666677777778999999999999999999999999999999876444 44447776654
No 312
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.15 E-value=1.2e+02 Score=36.08 Aligned_cols=47 Identities=4% Similarity=0.112 Sum_probs=25.4
Q ss_pred CCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHHHHc
Q 005476 49 HLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFTL 98 (695)
Q Consensus 49 ~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 98 (695)
++++.+-..-+..+.+. +..+....+...+..+|...-...+.++.+
T Consensus 632 D~d~~VR~~Av~~L~~~---~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~ 678 (897)
T PRK13800 632 DPDPGVRRTAVAVLTET---TPPGFGPALVAALGDGAAAVRRAAAEGLRE 678 (897)
T ss_pred CCCHHHHHHHHHHHhhh---cchhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56777777777777666 654433444444444554444444444433
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.06 E-value=2.9 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 005476 495 WRTLLAACRAHKNVKVGEESLKNLVT 520 (695)
Q Consensus 495 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 520 (695)
++.|...|...|++++|+.+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34444444444444444444444433
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.83 E-value=2.7 Score=27.19 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 527 GDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999999876
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.24 E-value=5.9 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 005476 498 LLAACRAHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 498 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
+.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 45578899999999999999999999874
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.18 E-value=41 Score=30.20 Aligned_cols=23 Identities=4% Similarity=0.055 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 005476 190 WNSMFSGYVKTECWREIVDLFNE 212 (695)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~ 212 (695)
+..++..+...|++-+|+++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444455555555555555444
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.87 E-value=2.2 Score=37.29 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHH
Q 005476 93 IRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEE 139 (695)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 139 (695)
|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~ 60 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEK 60 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchH
Confidence 33344444444444444444443333334444444444444443333
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.28 E-value=1.1 Score=39.26 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=66.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhH
Q 005476 126 CTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWRE 205 (695)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 205 (695)
.++..+.+.+..+...++++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777888888888999999877667789999999999999988999988884333 444567777888888888
Q ss_pred HHHHHHHHH
Q 005476 206 IVDLFNEMR 214 (695)
Q Consensus 206 A~~~~~~m~ 214 (695)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 888777753
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.07 E-value=5.5 Score=41.16 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=77.7
Q ss_pred hcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 005476 401 SNGQGERAL-ETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEA 479 (695)
Q Consensus 401 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 479 (695)
..|+...|- ++|.-++...-.|+.+...+.| ..+.|.++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345554443 4555555555567766555444 5677888888888776643 3445566777888888888888888
Q ss_pred HHHHHhC-CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 480 YQFIKNM-PIP-PNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 480 ~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
..+-+.| +.+ .++.+...-.......|-++++...+++++.++|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8887776 111 133333333334556677888888888888887654
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.96 E-value=2.6 Score=24.28 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHH
Q 005476 528 DYILLSDIYASAGRCEDALRVMN 550 (695)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~ 550 (695)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678888888888888888765
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.14 E-value=11 Score=29.82 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCCccHHHHHHH
Q 005476 104 EAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQIL-KSGFGCRQLVTNTLIH 164 (695)
Q Consensus 104 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~ 164 (695)
++.+-++.+....+.|++....+.|++|.+.+++..|.++++-++ +.|. +...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 556666777777788888888999999999999999999888776 3332 3345555443
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.06 E-value=93 Score=33.06 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=74.9
Q ss_pred hHHhcchhhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 005476 362 TALMDFYAKCGLIENAVEVFKKMPL--KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGM 439 (695)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 439 (695)
-++++.++..-...-.+.+-.+|.. .+-..+-.++.+|.++ ..++-..+|+++.+ ..-|.+.+..-+..+...++
T Consensus 70 ~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEkik 146 (711)
T COG1747 70 VTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHHhc
Confidence 3444444444444444444444432 3444555566666666 44555666666666 34444444444444444466
Q ss_pred HHHHHHHHHHchhhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCChh
Q 005476 440 VDEGRELFVSMSRDFDLEPR------MEHYGCMVDILGRAGLVEEAYQFIKNM----PIPPNPVIWRTLLAACRAHKNVK 509 (695)
Q Consensus 440 ~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~~ 509 (695)
.+.+..+|..+.. .+.|. .+.|.-|+...+ .+.+.-+.+..++ +...-.+.+.-+-.-|....|+.
T Consensus 147 ~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 147 KSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred hhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 6666666665543 23331 223444433221 2233333333332 22223333444444555666666
Q ss_pred HHHHHHHHHHhcCCCC
Q 005476 510 VGEESLKNLVTLEPMH 525 (695)
Q Consensus 510 ~a~~~~~~~~~~~p~~ 525 (695)
+|+++...+++.+..|
T Consensus 223 eai~Ilk~il~~d~k~ 238 (711)
T COG1747 223 EAIRILKHILEHDEKD 238 (711)
T ss_pred HHHHHHHHHhhhcchh
Confidence 6666666666655444
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.02 E-value=42 Score=29.29 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHhcCCC
Q 005476 267 YAKCGHVDKARRLFEQMNIK 286 (695)
Q Consensus 267 ~~~~g~~~~A~~~f~~m~~~ 286 (695)
+...|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 45566666666666666554
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.59 E-value=3.7 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005476 495 WRTLLAACRAHKNVKVGEESLKNLVTLEP 523 (695)
Q Consensus 495 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 523 (695)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444445555555555555554444
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.55 E-value=3 Score=25.20 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 528 DYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998764
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.47 E-value=3.6 Score=24.85 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=23.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 497 TLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 497 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
.+..++.+.|+.++|.+.++++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 35566778889999999999998888863
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.25 E-value=4.8 Score=24.60 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 527 GDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.+|..++.+|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998876
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.10 E-value=11 Score=34.63 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=50.7
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCcccHHHHHHHHHHcCCHHHH
Q 005476 472 RAGLVEEAYQFIKNMPIPP--NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEP----MHSGDYILLSDIYASAGRCEDA 545 (695)
Q Consensus 472 ~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a 545 (695)
+.|+ ++|.+.|-.+.-.| +....-.-+..|....|.++++.++-+++++.+ .|+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444 45666665553233 333444455566668889999999999998642 3567888999999999998887
Q ss_pred H
Q 005476 546 L 546 (695)
Q Consensus 546 ~ 546 (695)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 329
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=77.95 E-value=79 Score=31.62 Aligned_cols=63 Identities=13% Similarity=0.338 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c----ccHHHHHHHHHHchhhcCCC--CChhHHHHHH
Q 005476 405 GERALETYYIMREKNIEPNDVAFIAVLSACSH--V----GMVDEGRELFVSMSRDFDLE--PRMEHYGCMV 467 (695)
Q Consensus 405 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li 467 (695)
+++.+.+++.|.+.|++-+..+|.+....... . ....++..+|+.|.+++..- ++-..+..|+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 34567788999999999888887764433332 2 23667889999998876543 3334444443
No 330
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.95 E-value=3.3 Score=25.75 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=19.0
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhcCChhHHH
Q 005476 146 QILKSGFGCRQLVTNTLIHLYANCGRIDIAR 176 (695)
Q Consensus 146 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 176 (695)
+.++.. +.+...|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 456667777777777777777764
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.73 E-value=14 Score=29.69 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005476 104 EAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIH 164 (695)
Q Consensus 104 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 164 (695)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-++..- ......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666667788888888888899988889888888888776542 222336665544
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.31 E-value=58 Score=29.25 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=67.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChh-HHHHH--HHHHhhcC
Q 005476 399 LASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRME-HYGCM--VDILGRAG 474 (695)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 474 (695)
+++.+..++|+.-|.++...|...-.+ .-..........|+...|...|+++-++.. .|-.. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 456777888888888888766443222 222233345677888888888888865422 22211 11111 22345667
Q ss_pred CHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005476 475 LVEEAYQFIKNMPIPPN---PVIWRTLLAACRAHKNVKVGEESLKNLVT 520 (695)
Q Consensus 475 ~~~~A~~~~~~m~~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 520 (695)
.+++.....+.+....+ ...-..|.-+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777766666522212 12223444455566666666666666554
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.29 E-value=1.1e+02 Score=32.51 Aligned_cols=195 Identities=11% Similarity=0.126 Sum_probs=126.1
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 005476 54 ISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSR 133 (695)
Q Consensus 54 ~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (695)
+-|+++..|.. |-+....+.++. ...-+++..+..+-...-...+-.+|+.-| -+...|-.++++|..
T Consensus 44 ~k~si~~lyis----g~~~~s~~~l~d------~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~e 111 (711)
T COG1747 44 SKNSIIALYIS----GIISLSKQLLDD------SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKE 111 (711)
T ss_pred hhhhhHHHHHH----HHHHhhhccccc------hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHh
Confidence 34555555542 444444444333 235577888888877777778888888844 467788889998887
Q ss_pred cCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCe---------ehHHHHHHHHHhCCChh
Q 005476 134 IRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDV---------FSWNSMFSGYVKTECWR 204 (695)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---------~~~~~li~~~~~~g~~~ 204 (695)
. ..++-..+++++++..+ .|++....|+..|-+ ++...+...|..+..+=+ ..|..++..- ..+.+
T Consensus 112 n-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D 186 (711)
T COG1747 112 N-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKD 186 (711)
T ss_pred c-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHH
Confidence 7 55677788888888764 355556667777766 888888888876543211 1465555422 34556
Q ss_pred HHHHHHHHHHH-cCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005476 205 EIVDLFNEMRD-LGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDM 266 (695)
Q Consensus 205 ~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 266 (695)
..+.+..+... .|..--.+.+.-+..-|....++.++.+++..+.+.. ..|......++.-
T Consensus 187 ~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 187 FFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 66666666643 3444455567777788888889999999988887765 3344444444443
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.26 E-value=39 Score=27.16 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHH
Q 005476 264 VDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMV 327 (695)
Q Consensus 264 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 327 (695)
+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|...| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667888999998888888888888887765 36677777777777777766 45555543
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.10 E-value=47 Score=35.90 Aligned_cols=147 Identities=19% Similarity=0.105 Sum_probs=98.1
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHH
Q 005476 371 CGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVS 449 (695)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 449 (695)
.|+++.|..++..++++ .-+.++.-+.++|..++|+++ .+|.. -|.. ..+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHh
Confidence 46777777777776632 234455666677777776654 33332 2322 2367888888877655
Q ss_pred chhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccH
Q 005476 450 MSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDY 529 (695)
Q Consensus 450 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (695)
. .+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+.....+.+..|.
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 4 245668889999999999999988887752 256677777778887766666666666555442
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 005476 530 ILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
--.+|...|+++++.+++.+
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHh
Confidence 22357788999999888764
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.93 E-value=20 Score=37.21 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=92.0
Q ss_pred ccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhHHHH
Q 005476 436 HVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMP--IPPNPVIWRTLLAACRAHKNVKVGEE 513 (695)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~ 513 (695)
..|++..|-+-.....+.+.-.|+.. ..........|.++.+...+.... +.....+...++......|+.+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45676666554444445444445443 333445677899999999887762 33456678889999999999999999
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCceeEEEECCEEEEeecC
Q 005476 514 SLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQGIKKTPGCSLIELDGEIYEFLAE 578 (695)
Q Consensus 514 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~ 578 (695)
..+.++..+.+++......+..-...|-++++...|++......+.+. .|+..-.....|-.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~--g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS--GWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc--cceeeeccceeccCc
Confidence 999999877666665544444455678899999999998775443333 344433333344433
No 337
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.83 E-value=1.8e+02 Score=34.57 Aligned_cols=255 Identities=9% Similarity=-0.071 Sum_probs=112.6
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 005476 278 RLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELT 357 (695)
Q Consensus 278 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 357 (695)
.+...+..+|...-...+..+.+.+. +++...+.+... .+|...-...+.++...+........+..+.+ .++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44444455555555555555555554 334444444442 22333223333333333211111111222222 134
Q ss_pred hHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005476 358 ITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHV 437 (695)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (695)
..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 44444444444433211 12233444555666555555666665544322 11222 244544444455555555
Q ss_pred ccHHH-HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 005476 438 GMVDE-GRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLK 516 (695)
Q Consensus 438 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 516 (695)
+..+. +...+..+.+ .++...-...+..+++.|..+.+...+...-..+|..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 44332 2333334433 255666667777777777655443333332224454444555566655554 33444444
Q ss_pred HHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 517 NLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 517 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.+++ +| +...-...+.++.+.+.-..+...+....+
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4443 22 223333444555543223345555554444
No 338
>PRK10941 hypothetical protein; Provisional
Probab=75.64 E-value=12 Score=36.58 Aligned_cols=61 Identities=23% Similarity=0.174 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 495 WRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 495 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
.+.|-.+|.+.++++.|..+.+.++.+.|+++.-+---+-+|.+.|.+..|..=++...++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4667778999999999999999999999999988888899999999999999988887764
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.26 E-value=25 Score=34.62 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=70.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCC
Q 005476 252 ELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK---------DVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN 322 (695)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 322 (695)
|.+....+...++..-....++++++..+-.+... ...+|--+ +-.-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 44555555566666666677788888877766532 22333332 233467788888888888899999
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 005476 323 EVTMVSVLSCCAVLGALETGKWVHLYVKKKR 353 (695)
Q Consensus 323 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 353 (695)
.+|+..+|+.+.+.++...|.++...++...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988888877776654
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.01 E-value=12 Score=34.75 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 005476 464 GCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
+.-+..+.+.+++++|+...+.- .-+| |...-..++..++..|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455667777777777666543 3445 455556667777778888888777777777777654
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.98 E-value=47 Score=34.32 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC----------CC-----------------CC-CHhhHHHH---HHHHHhcCC
Q 005476 459 RMEHYGCMVDILGRAGLVEEAYQFIKNM----------PI-----------------PP-NPVIWRTL---LAACRAHKN 507 (695)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~-----------------~p-~~~~~~~l---l~a~~~~g~ 507 (695)
.+.++-.+.+.+.+.|+.+.|.+++++. .+ .+ |...|.++ +....+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3445555556666666666666655543 01 11 44455554 456789999
Q ss_pred hhHHHHHHHHHHhcCCC-CcccHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 005476 508 VKVGEESLKNLVTLEPM-HSGDYILLSDIYA-SAGRCEDALRVMNQMRE 554 (695)
Q Consensus 508 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 554 (695)
+..|.+..+-++.++|. |+-.-..+++.|+ ++++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999998 8877778888876 77888888888877655
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.74 E-value=86 Score=35.18 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCC-------HHHHHHHHHHhHHCCCCCCHH
Q 005476 258 KLMTAVVDMYAKCGHVDKARRLFEQMN---IKDVVAWSAMISGYSQARR-------CKEALGVFHDMQMANVVPNEV 324 (695)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~ 324 (695)
.+| ++|-.+.|+|++++|.++..+.. .+....+-..+..|+...+ -++...-|++..+.....|++
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344 35667788899888888884433 2233455666666665432 234555566665544322544
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.53 E-value=12 Score=37.08 Aligned_cols=112 Identities=17% Similarity=0.097 Sum_probs=60.7
Q ss_pred cchhhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHH
Q 005476 366 DFYAKCGLIENAVEVFKKMPL--K-NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPND-VAFIAVLSACSHVGMVD 441 (695)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 441 (695)
+-|.+.|.+++|...|..-.. | |.+.+..-..+|.+...+..|..-....+..+ -.. ..|..-..+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHH
Confidence 457788888888888766443 3 67777777777777777776665555544311 110 12333333333344555
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 005476 442 EGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKN 485 (695)
Q Consensus 442 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (695)
+|.+-++..+ .++|+. +-|-..|.+...+.++.-+.+.
T Consensus 183 EAKkD~E~vL---~LEP~~---~ELkK~~a~i~Sl~E~~I~~Ks 220 (536)
T KOG4648|consen 183 EAKKDCETVL---ALEPKN---IELKKSLARINSLRERKIATKS 220 (536)
T ss_pred HHHHhHHHHH---hhCccc---HHHHHHHHHhcchHhhhHHhhc
Confidence 5555554443 455652 2334445555555555444443
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.93 E-value=1.8e+02 Score=32.82 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=29.5
Q ss_pred CCHHHHHHHhccCCC--C---CcchHHHHHHHHHcCCCchHHHHHHHHHHh
Q 005476 69 TTMDYALSIFHKINE--P---DSSAYNIMIRAFTLKQSPQEAVMLYKTMLQ 114 (695)
Q Consensus 69 g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 114 (695)
+.+++|...-+..+. + -...|-..|..+.-.|++++|-...-.|..
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 667777777665542 1 223577777777777777777776666654
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.48 E-value=44 Score=26.85 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005476 136 ALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRD 215 (695)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 215 (695)
..++|..+-+.+...+- ....+--.-+..+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45666666666655431 1233333335566788999999999999988999998877553 56666666666667766
Q ss_pred cCCCCCHhHH
Q 005476 216 LGVKFDEVTL 225 (695)
Q Consensus 216 ~g~~pd~~t~ 225 (695)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.55 E-value=99 Score=29.35 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=11.3
Q ss_pred hccCChhHHHHHHHHHHHhCC
Q 005476 334 AVLGALETGKWVHLYVKKKRM 354 (695)
Q Consensus 334 ~~~~~~~~a~~i~~~~~~~~~ 354 (695)
+..+++..|..+|+++.+..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444555556666655555443
No 347
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.31 E-value=1.9e+02 Score=32.59 Aligned_cols=241 Identities=10% Similarity=-0.011 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHHHhHHCC-CCCCHH--HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHhHHhcchhhcCCHHHH
Q 005476 301 ARRCKEALGVFHDMQMAN-VVPNEV--TMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENA 377 (695)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g-~~pd~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (695)
..+.+.|..++....... ..++.. ....+.......+....+...+....... .+..+...-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445577777777664332 222222 12222222222211344444444332222 1333333334444567777777
Q ss_pred HHHHhcCCCC--ChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhc
Q 005476 378 VEVFKKMPLK--NVFFWTV-LIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDF 454 (695)
Q Consensus 378 ~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 454 (695)
...+..|+.. +..-|-- +..++...|+.++|...|+++.. .. +|-.++.+ .+.|..-. + . .
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~-------~-~-~ 395 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYP-------L-K-I 395 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCC-------C-C-C
Confidence 7777777541 2111211 33455557888888888877633 12 34433322 12221100 0 0 0
Q ss_pred CCCCCh------hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CC
Q 005476 455 DLEPRM------EHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEP---MH 525 (695)
Q Consensus 455 ~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p---~~ 525 (695)
...|.. .---.-+..+...|+..+|...+..+-...+......+.......|..+.++....+....+. .-
T Consensus 396 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf 475 (644)
T PRK11619 396 DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF 475 (644)
T ss_pred CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC
Confidence 000000 001123455667888888888777653234555555555666788888888877765433210 11
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 005476 526 SGDYILLSDIYASAGRCEDALRVMNQMREQGIKK 559 (695)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 559 (695)
+..|......+++.-..+.+.-.---..|.+..|
T Consensus 476 p~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 476 PLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 2346666666666556666553322233555544
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.06 E-value=44 Score=32.77 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc--cccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 005476 405 GERALETYYIMRE-KNIEPNDVAFIAVLSACSH--VGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQ 481 (695)
Q Consensus 405 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 481 (695)
..+|+.+|+.... ..+--|......+++.... ......-.++.+.+...++-.++..+..+.++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552111 1233344445555554433 112333334444444545556666666777777777777777777
Q ss_pred HHHhCC----CCCCHhhHHHHHHHHHhcCChh
Q 005476 482 FIKNMP----IPPNPVIWRTLLAACRAHKNVK 509 (695)
Q Consensus 482 ~~~~m~----~~p~~~~~~~ll~a~~~~g~~~ 509 (695)
+++... ...|...|..++..-...||..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 776641 1225566666666666666543
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.99 E-value=30 Score=31.92 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC---CCCCccHHHHHHHHHHhcCChhHH
Q 005476 103 QEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSG---FGCRQLVTNTLIHLYANCGRIDIA 175 (695)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~Li~~y~~~g~~~~A 175 (695)
++|++.|-++...+.--++.....|...|. ..+.+++++++-..++.. -.+|+.++.+|++.|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555544433323333333333222 344555555554444421 133445555555555555555444
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.69 E-value=8.5 Score=22.07 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=12.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 005476 464 GCMVDILGRAGLVEEAYQFIK 484 (695)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~ 484 (695)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666654
No 351
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.30 E-value=12 Score=29.64 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 512 EESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 455677778889988888899999999999999999888887654
No 352
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.15 E-value=45 Score=36.91 Aligned_cols=182 Identities=19% Similarity=0.263 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHH----------HHHHHHHHhccCChhHHHHHHHHHHHh-C-CCCc
Q 005476 290 AWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVT----------MVSVLSCCAVLGALETGKWVHLYVKKK-R-MELT 357 (695)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----------~~~ll~a~~~~~~~~~a~~i~~~~~~~-~-~~~~ 357 (695)
+-..++-.|....+++..+++.+.+... ||..- |.-.++---+-|+-+.|..+.--+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 3445666677777888888888777653 43322 222333333456666676665555543 2 223
Q ss_pred hHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHH
Q 005476 358 ITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV---AFIAVLSAC 434 (695)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~ 434 (695)
++||-||++ |+.|- +-+.|...+..+.|.++|++.-+ +.|+.. -+..|+.+-
T Consensus 279 --------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 467777764 33331 11334555667789999999888 788765 344444432
Q ss_pred hccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 005476 435 SHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEES 514 (695)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 514 (695)
.+. ++...++ . ..--.|-..++|.|.++.-.++++-. ..+.+-.-.+|+.+|.++
T Consensus 334 G~~--Fens~El----q---------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GEH--FENSLEL----Q---------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhh--ccchHHH----H---------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 221 1111111 0 11123455678999988887777642 334555567889999999
Q ss_pred HHHHHhcCCCC
Q 005476 515 LKNLVTLEPMH 525 (695)
Q Consensus 515 ~~~~~~~~p~~ 525 (695)
.+.|.+++|+.
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999999864
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.82 E-value=20 Score=32.38 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCC----HHHHHHHHHHHH
Q 005476 508 VKVGEESLKNLVTLEPMHSGDYILLSDIYASAGR----CEDALRVMNQMR 553 (695)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 553 (695)
+++|+.-|++++.++|+...++..++++|...+. ..+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5667777888888999999999999999987653 334445555443
No 354
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.49 E-value=12 Score=39.16 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=62.3
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHhhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHH
Q 005476 470 LGRAGLVEEAYQFIKNM-PIPPNPVIWRT-LLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALR 547 (695)
Q Consensus 470 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 547 (695)
+...+.++.|..++.+. ...||-..|-+ =..++.+.+++..|..=+.++++++|.....|+.=+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 44556667777766654 45665444333 23667788888888888888888888888888888888888888888888
Q ss_pred HHHHHHh
Q 005476 548 VMNQMRE 554 (695)
Q Consensus 548 ~~~~m~~ 554 (695)
.|+....
T Consensus 94 ~l~~~~~ 100 (476)
T KOG0376|consen 94 DLEKVKK 100 (476)
T ss_pred HHHHhhh
Confidence 8876554
No 355
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.35 E-value=3.6e+02 Score=34.92 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHhcCChhHHHHHHhc-cCCCCeehHHHHHHHHHhCCChhHH
Q 005476 130 ACSRIRALEEGEQIHAQILKSGF--GCRQLVTNTLIHLYANCGRIDIARKMFDR-MSNRDVFSWNSMFSGYVKTECWREI 206 (695)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A 206 (695)
+-.+.+.+..|...++.-..... ......+-.|...|+.-+++|...-+... ..++ +...-|......|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHH
Confidence 33344556666655555210000 11122334444477777777766665552 2222 223344455667788888
Q ss_pred HHHHHHHHHcCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHH-HHHHHhcCCHHHHHHHHHhcC
Q 005476 207 VDLFNEMRDLGVKFD-EVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAV-VDMYAKCGHVDKARRLFEQMN 284 (695)
Q Consensus 207 ~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~ 284 (695)
...|+.+.+. .|+ ..+++.++...-..+.++...-..+..... ..+...-++++ +.+--+.++++.......
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888764 344 556666666655556555544432222221 12222222222 233345566665555544
Q ss_pred CCChhHHHHH
Q 005476 285 IKDVVAWSAM 294 (695)
Q Consensus 285 ~~~~~~~~~l 294 (695)
.++...|.+.
T Consensus 1543 ~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 DRNIEYWSVE 1552 (2382)
T ss_pred cccccchhHH
Confidence 4455555544
No 356
>PRK12798 chemotaxis protein; Reviewed
Probab=68.19 E-value=1.6e+02 Score=30.72 Aligned_cols=180 Identities=15% Similarity=0.154 Sum_probs=118.2
Q ss_pred cCCHHHHHHHHhcCCC----CChhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccccHH
Q 005476 371 CGLIENAVEVFKKMPL----KNVFFWTVLIQCL-ASNGQGERALETYYIMREKNIEPNDV----AFIAVLSACSHVGMVD 441 (695)
Q Consensus 371 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 441 (695)
.|+.++|.+.+..+.. +....+-+|+.+- ....++.+|+++|++.+- .-|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888754 2445566666554 445689999999999887 566543 3444455677889999
Q ss_pred HHHHHHHHchhhcCCCCChhHHH-HHHHHHhh---cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 005476 442 EGRELFVSMSRDFDLEPRMEHYG-CMVDILGR---AGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKN 517 (695)
Q Consensus 442 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 517 (695)
++..+-....+.|...|-...|. .++..+.+ .-..+.-.+++..|.-.--...|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877776666666666544332 23333333 334455566677764222356788888888999999999999999
Q ss_pred HHhcCCCCcccHHHHHHHHHH-----cCCHHHHHHHHHHHH
Q 005476 518 LVTLEPMHSGDYILLSDIYAS-----AGRCEDALRVMNQMR 553 (695)
Q Consensus 518 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~ 553 (695)
++.+... ...-...+..|.. ..+.+++.+.+..+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9998633 2333444455543 345666666665443
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.96 E-value=12 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 530 ILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 458889999999999999999988654
No 358
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.89 E-value=76 Score=25.91 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005476 237 DIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQM 316 (695)
Q Consensus 237 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (695)
..++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||..+|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34556666666665542 233343444556778888998855555556778888877655 477888888888887776
Q ss_pred CCCCCCHHHH
Q 005476 317 ANVVPNEVTM 326 (695)
Q Consensus 317 ~g~~pd~~t~ 326 (695)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 359
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.56 E-value=1.2e+02 Score=27.99 Aligned_cols=113 Identities=5% Similarity=0.020 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHH-----HHHHHHhhcCCHHHH
Q 005476 407 RALETYYIMREKNIEPNDVAFI--AVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYG-----CMVDILGRAGLVEEA 479 (695)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 479 (695)
+.....+++....-+-..-++. .+...+...+++++|...++..... |.-+.+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555566666532222222333 2345677888999998888866531 2222333 345667788999999
Q ss_pred HHHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 005476 480 YQFIKNMPIPPN--PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPM 524 (695)
Q Consensus 480 ~~~~~~m~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 524 (695)
+..++... .++ ......-...+...|+-++|...|++.++.++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99988762 222 112233345678888889999999988887643
No 360
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.85 E-value=63 Score=34.98 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=57.4
Q ss_pred HHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 005476 166 YANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWIS 245 (695)
Q Consensus 166 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 245 (695)
..+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34556777776665443 3455677777777777777777777766544 445555556666655544444
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005476 246 EYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQ 282 (695)
Q Consensus 246 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 282 (695)
....+.|. . |.-.-+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 44444442 1 2222344555666666665544
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.85 E-value=40 Score=31.84 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCh-------hHHHHHHHHHHhcC--CCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 494 IWRTLLAACRAHKNV-------KVGEESLKNLVTLE--PMH----SGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~-------~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
.+.-+...|+..|+. ..|.+.|+++.+.+ |.. ......++.++.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344445556666764 44555555555543 211 2355688999999999999999999998753
No 362
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.70 E-value=70 Score=27.92 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCeehHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 005476 185 RDVFSWNSMFSGYVKTEC-WREIVDLFNEMRDLGVKFDEVTLINVLMACGRL 235 (695)
Q Consensus 185 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 235 (695)
.+-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 356678888888866665 456678888888888888888888888888765
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.46 E-value=2.1e+02 Score=30.51 Aligned_cols=102 Identities=9% Similarity=0.126 Sum_probs=59.6
Q ss_pred CCCCHHHHH-HHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCHh
Q 005476 420 IEPNDVAFI-AVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDIL---GRAGLVEEAYQFIKNM--PIPPNPV 493 (695)
Q Consensus 420 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~ 493 (695)
..|+..|+. .++.-+-+.|-+.+|...+..+.. --+|+...|..+|..= ..+| +.-+.++++.| .+..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 455555543 455555666777777777777653 2234566666666542 2333 55566666665 2235666
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh-cCCC
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVT-LEPM 524 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~ 524 (695)
.|...+.--..+|..+.+-.++.++.+ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 777777666677777766666655554 4443
No 364
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.73 E-value=51 Score=30.33 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH---HHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 465 CMVDILGRAGLVEEAYQFIKNM-PIPPNPVIWRTLL---AACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll---~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
.-..++.+.+.++.|++-..+. .+.| ..-.+|. .+|-+...++.|++-++++++.+|..
T Consensus 139 Nraaa~iKl~k~e~aI~dcsKaiel~p--ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 139 NRAAALIKLRKWESAIEDCSKAIELNP--TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhHHHHHHhhhHHHHHHHHHhhHhcCc--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 3344555666666666555443 2233 2222333 35777788899999999999998864
No 365
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.61 E-value=4.3 Score=40.21 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 474 GLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 474 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
|.+++|++.|... +..| ....|..-.+++.+.+....|++-+..+++++|+....|-.-..+-.-.|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4455555555443 2222 2333333344555666666666666666677766666666666666666777777777766
Q ss_pred HHhCCCcc
Q 005476 552 MREQGIKK 559 (695)
Q Consensus 552 m~~~~~~~ 559 (695)
..+.++..
T Consensus 208 a~kld~dE 215 (377)
T KOG1308|consen 208 ACKLDYDE 215 (377)
T ss_pred HHhccccH
Confidence 66665543
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.48 E-value=1.6e+02 Score=28.80 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=72.2
Q ss_pred hcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHH----HHHHcCCCCCHhHHHHHHHHHhccCChh-HHH
Q 005476 168 NCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFN----EMRDLGVKFDEVTLINVLMACGRLADIE-LGG 242 (695)
Q Consensus 168 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~ 242 (695)
+.+++++|.+++..- ...+.+.|+...|.++-. .+.+.+.++|......++......+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666554321 234455555544444333 3334466666655555554444332211 122
Q ss_pred HHHHHHHH---hCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHC
Q 005476 243 WISEYMEE---KEL--NGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQMA 317 (695)
Q Consensus 243 ~~~~~~~~---~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (695)
++...+++ .|- ..|+.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 23333332 221 236778888888999999999998887655444443332333333333332222
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 005476 318 NVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKK 351 (695)
Q Consensus 318 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 351 (695)
|.+.-..++. +...+++..|...+....+
T Consensus 141 ----dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ----DLFIARAVLQ-YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ----HHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 3333333443 3445666666666554443
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.90 E-value=2.1e+02 Score=30.29 Aligned_cols=44 Identities=14% Similarity=-0.021 Sum_probs=28.7
Q ss_pred ehHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005476 188 FSWNSMFSGYVK---TECWREIVDLFNEMRDLGVKFDEVTLINVLMA 231 (695)
Q Consensus 188 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 231 (695)
..+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..+
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344555555555 47888888888998888877765544333333
No 368
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.83 E-value=1.2e+02 Score=29.00 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=48.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 500 AACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 500 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
..+...|++-++++.-..++..+|.+..+|..-+.+.+..=+.++|..-|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34567789999999999999999999999999999888888888998888887764
No 369
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.62 E-value=1.4e+02 Score=28.50 Aligned_cols=105 Identities=21% Similarity=0.192 Sum_probs=54.4
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 005476 392 WTVLIQCLA--SNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDI 469 (695)
Q Consensus 392 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 469 (695)
|...+.||. .++++++|++++-.- .+.|+... .++.+....|+.+.|..++..+.. .-.+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 344455544 356666776666221 12222221 355666667777777777766531 11122223333333
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 005476 470 LGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAH 505 (695)
Q Consensus 470 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~ 505 (695)
..+|.+.||..+.+..+-+-....|..++..|...
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 55677888877777663221234666666665543
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.95 E-value=27 Score=33.03 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=23.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 005476 502 CRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQM 552 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 552 (695)
+.+..+++.+.+--.+++++.|+.......++........+++|+..+.+.
T Consensus 54 hlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 54 HLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.80 E-value=19 Score=20.54 Aligned_cols=27 Identities=26% Similarity=0.100 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMRE 417 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (695)
.|..+...+...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 355566666667777777777766654
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.24 E-value=17 Score=21.55 Aligned_cols=29 Identities=3% Similarity=0.100 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHhcCCCCcccHHHHHH
Q 005476 506 KNVKVGEESLKNLVTLEPMHSGDYILLSD 534 (695)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (695)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877776666554
No 373
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.04 E-value=3e+02 Score=30.50 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=37.9
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHc---CCHHHHHH
Q 005476 475 LVEEAYQFIKNMPIPPNPVIWRTLLAACRA----HKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASA---GRCEDALR 547 (695)
Q Consensus 475 ~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~ 547 (695)
+.+.+...+.+....-+......|...|.. ..+++.|...+.++-+.. +.....++.++... ..+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 344444555444323333333333333221 234566666666655544 34455555555321 12677777
Q ss_pred HHHHHHhC
Q 005476 548 VMNQMREQ 555 (695)
Q Consensus 548 ~~~~m~~~ 555 (695)
+++...+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 77776653
No 374
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.00 E-value=2.5e+02 Score=29.58 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=8.9
Q ss_pred HHHHhcCChhHHHHHHhc
Q 005476 164 HLYANCGRIDIARKMFDR 181 (695)
Q Consensus 164 ~~y~~~g~~~~A~~~f~~ 181 (695)
...++.|+.+.+..+++.
T Consensus 73 ~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 73 HDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 334455555555555543
No 375
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.28 E-value=1.9e+02 Score=27.87 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=79.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 005476 395 LIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSH-VGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRA 473 (695)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 473 (695)
++..+-+.|+++++.+.++++...+...+..--+.+-.+|-. .|....+++++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 456677889999999999999987666665544444444422 35555666666655443211111 2222222222210
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCHhhH-HHHHHH-H---Hh-------cCChhHHHHHHHHHHh-----cCCCCc
Q 005476 474 ------GLVEEAYQFIKNM--PI--PPNPVIW-RTLLAA-C---RA-------HKNVKVGEESLKNLVT-----LEPMHS 526 (695)
Q Consensus 474 ------g~~~~A~~~~~~m--~~--~p~~~~~-~~ll~a-~---~~-------~g~~~~a~~~~~~~~~-----~~p~~~ 526 (695)
.--.+...+++.. |. .+...++ .-+-+= | +. ..-.+.|.+.++++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123444445443 11 1111111 111111 1 11 1123667777777765 345554
Q ss_pred ccHH---HHHH-HHHHcCCHHHHHHHHHHHHhCCC
Q 005476 527 GDYI---LLSD-IYASAGRCEDALRVMNQMREQGI 557 (695)
Q Consensus 527 ~~~~---~l~~-~~~~~g~~~~a~~~~~~m~~~~~ 557 (695)
.-.- ..+. .|--.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3221 2222 34568999999999888776544
No 376
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.79 E-value=2.7e+02 Score=29.70 Aligned_cols=239 Identities=12% Similarity=0.069 Sum_probs=118.2
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHHhccCCh------hHHHHHHHHHHHhC-C-CCchHHHhHHhcchhhcCCHHH-HH
Q 005476 308 LGVFHDMQMANVVPNEVTMVSVLSCCAVLGAL------ETGKWVHLYVKKKR-M-ELTITLGTALMDFYAKCGLIEN-AV 378 (695)
Q Consensus 308 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~------~~a~~i~~~~~~~~-~-~~~~~~~~~li~~y~~~g~~~~-A~ 378 (695)
.++|++..+. .|....+...|..|...-.. .....+++...+.+ . +.....|..+.-++.+.....+ |.
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 3555554432 34445555555555433222 22233333333322 2 2234455555555555444333 33
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcC-ChH-HHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccccHHHHHHHHHHchhhcC
Q 005476 379 EVFKKMPLKNVFFWTVLIQCLASNG-QGE-RALETYYIMREKNIEPNDVAFIAVL-SACSHVGMVDEGRELFVSMSRDFD 455 (695)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~-~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~ 455 (695)
.+-.+....+...|-.-+....... ++. .-.++|...+..-..+-...+++.. .........+.....+..+
T Consensus 380 ~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~----- 454 (568)
T KOG2396|consen 380 KLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV----- 454 (568)
T ss_pred HhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh-----
Confidence 3333444556666655555444221 211 1122333333322223333343333 0011111112222222222
Q ss_pred CCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHhhHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCcccHH
Q 005476 456 LEPRM-EHYGCMVDILGRAGLVEEAYQFIKNMPI--PPNPVIWRTLLAAC--RAHKNVKVGEESLKNLVTLEPMHSGDYI 530 (695)
Q Consensus 456 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (695)
..|+. ..-+.+++-+.+.|-..+|...+.++.. +|....+..++.-- ...-+...+.+.++.+..---.++..|.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~ 534 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWM 534 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHH
Confidence 23443 3446788888899999999999888722 34677777776542 2223467777888888764446677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 005476 531 LLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
.....-...|+.+.+-.++.+..
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHH
Confidence 66666667777777666655544
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.47 E-value=24 Score=26.93 Aligned_cols=45 Identities=7% Similarity=0.085 Sum_probs=31.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcccHH---HHHHHHHHcCCHHHHHHH
Q 005476 504 AHKNVKVGEESLKNLVTLEPMHSGDYI---LLSDIYASAGRCEDALRV 548 (695)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 548 (695)
...+.+.|+..++++++..++.+.-|. .|..+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888887655544444 556677888888777665
No 378
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.25 E-value=1.1e+02 Score=30.55 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCC-hhHHHHHHHHH
Q 005476 395 LIQCLASNGQGERALETYYIMREKNIEPNDV---AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYGCMVDIL 470 (695)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 470 (695)
+..+-.+.|+..+|.+.|+.+.+. .|-.. ....+|.+|.....+.....++.+.-. ..++.+ ...|++ ++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd-islPkSA~icYTa---AL 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD-ISLPKSAAICYTA---AL 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCcchHHHHHHH---HH
Confidence 444555678888888888887653 23211 233566777766655555555544321 122111 112221 12
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 005476 471 GRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 471 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
. ++..+-++ +.||..+-+.|-.+- ..|.+...++.+.+|.-+
T Consensus 355 L------K~RAVa~k--Fspd~asrRGLS~AE------~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 355 L------KTRAVSEK--FSPETASRRGLSTAE------INAVEAIHRAVEFNPHVP 396 (556)
T ss_pred H------HHHHHHhh--cCchhhhhccccHHH------HHHHHHHHHHhhcCCCCc
Confidence 1 22222233 356655544443332 346777778888877554
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.03 E-value=1.7e+02 Score=30.60 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=61.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccccHHHHHHHHHHchhhcCC-CCChhHHHHHHHHHhh
Q 005476 398 CLASNGQGERALETYYIMREKNIEPNDV--AFIAVLSACS--HVGMVDEGRELFVSMSRDFDL-EPRMEHYGCMVDILGR 472 (695)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~ 472 (695)
.+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 344678899999999999886 566554 3344444443 345678888888877643111 0112223333322222
Q ss_pred cCCHHHHHHHHHhCCCCCC-HhhHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 005476 473 AGLVEEAYQFIKNMPIPPN-PVIWRTLLAACR--AHKNVKVGEESLKNLVT 520 (695)
Q Consensus 473 ~g~~~~A~~~~~~m~~~p~-~~~~~~ll~a~~--~~g~~~~a~~~~~~~~~ 520 (695)
...+.........-+.++. ......+.+|-+ ..|+++.|...+-++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2222211111111111111 123333444433 46888888877777766
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.00 E-value=2.8e+02 Score=29.21 Aligned_cols=198 Identities=13% Similarity=0.103 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCCCchh--HHHHHHHHHccCCCCCHHHHHHHhccCCCCCc---chHHHHHHHHHcCCCchHHHHHHHHH
Q 005476 38 QVHAHLIKSRFHLNPTI--SENLLEAAAILIPATTMDYALSIFHKINEPDS---SAYNIMIRAFTLKQSPQEAVMLYKTM 112 (695)
Q Consensus 38 ~~~~~~~~~g~~~~~~~--~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m 112 (695)
.+...+++.|..++... ..+.+...++. |+.+-+..+++.-..++. ..++ .+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKF---RDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHHHHHHH--
Confidence 34566667787665432 34445555667 888877766665333322 1223 3444456677655444443
Q ss_pred HhCCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHhcCChhHHHHHHhccCC--
Q 005476 113 LQNSVEPD----RFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQL--VTNTLIHLYANCGRIDIARKMFDRMSN-- 184 (695)
Q Consensus 113 ~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~-- 184 (695)
.|...+ ..-. +.+...+..|+. ++.+.+++.|..++.. ...+.+...+..|+.+-+..+++.-..
T Consensus 90 --~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 90 --LGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred --cCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 332211 1111 223333445554 4555566667655432 123445556677888777777765433
Q ss_pred -CCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhH---HHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 005476 185 -RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVT---LINVLMACGRLADIELGGWISEYMEEKELNGNV 257 (695)
Q Consensus 185 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 257 (695)
+|..-++.+.. .+..|+. ++.+.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 163 ~~d~~g~TpL~~-A~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 163 IEDCCGCTPLII-AMAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCHHHH-HHHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 23333333333 3344553 34455566676665433 123344334445543 44455566655553
No 381
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.71 E-value=49 Score=28.79 Aligned_cols=64 Identities=20% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCH
Q 005476 476 VEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRC 542 (695)
Q Consensus 476 ~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 542 (695)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|...-...+++|...|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777888775 2333334455567899999999999999999999988877777777665543
No 382
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.51 E-value=2.8e+02 Score=29.11 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=44.0
Q ss_pred HHhcchhhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005476 363 ALMDFYAKCGLIENAVEVFKKMPLK---NVFFWTVLIQCLASNGQGERALETYYIMREKN 419 (695)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 419 (695)
.|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4667788889999999998887665 56778888888888888777777777766655
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.38 E-value=43 Score=25.59 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=22.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccccHHHHHHH
Q 005476 402 NGQGERALETYYIMREKNIEPN-DV-AFIAVLSACSHVGMVDEGREL 446 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~ 446 (695)
..+.++|+..|+...+.-..|. .. ++..++.+++..|++++.+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666555332222 11 555556666666665555443
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.99 E-value=66 Score=28.06 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=59.5
Q ss_pred HHhcCCCCc--hhHHHHHHHHHccCCCCCHHHHHHHhccCC---------CCCcchHHHHHHHHHcCCC-chHHHHHHHH
Q 005476 44 IKSRFHLNP--TISENLLEAAAILIPATTMDYALSIFHKIN---------EPDSSAYNIMIRAFTLKQS-PQEAVMLYKT 111 (695)
Q Consensus 44 ~~~g~~~~~--~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~ 111 (695)
.+.+..+++ ...|.+++-.+.. +++.....+++.+. ..+-.+|++++.+..+... ---+..+|..
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~---~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASY---QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 333444433 4467777766666 67777777666653 2455678888888866554 3346778888
Q ss_pred HHhCCCCCChhhHHHHHHHHhcc
Q 005476 112 MLQNSVEPDRFTFACTLKACSRI 134 (695)
Q Consensus 112 m~~~g~~p~~~~~~~ll~~~~~~ 134 (695)
|.+.+.+++..-|..++++|.+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcC
Confidence 88877888888888888887664
No 385
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.15 E-value=33 Score=31.00 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccc
Q 005476 405 GERALETYYIMREKNIEPNDV-AFIAVLSACSHVG 438 (695)
Q Consensus 405 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g 438 (695)
+++|+.-|++.+. +.|+.. ++..+..++...+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 3455555666666 788865 7777777766544
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.65 E-value=84 Score=26.51 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 407 RALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
+..+-+.......+-|+....-..|+||.+.+++..|.++|+.+.. +..+....|-.+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH---------HHHHHHHHh
Confidence 4455566666777899999999999999999999999999998864 44444445665543 445566666
Q ss_pred CC
Q 005476 487 PI 488 (695)
Q Consensus 487 ~~ 488 (695)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.43 E-value=1e+02 Score=26.20 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhc--CCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 005476 510 VGEESLKNLVTL--EPMHSGDYILLSDIYASAGRCEDALRVMNQ 551 (695)
Q Consensus 510 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (695)
.+.++|+.|... +-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 888899998874 456677888999999999999999999875
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.33 E-value=49 Score=26.30 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=36.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC---------cccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 502 CRAHKNVKVGEESLKNLVTLEPMH---------SGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
..+.||+..|.+.+.+.+...... ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778888877777766532111 12344677788899999999999998865
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.12 E-value=1.4e+02 Score=29.21 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=58.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-
Q 005476 396 IQCLASNGQGERALETYYIMRE--KNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGR- 472 (695)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 472 (695)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.+....+.++-..-.++ .-.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6788888888888776554433 2255554444433 478888888888777766654 222234448887777654
Q ss_pred ----cCCHHHHHHHHHhC
Q 005476 473 ----AGLVEEAYQFIKNM 486 (695)
Q Consensus 473 ----~g~~~~A~~~~~~m 486 (695)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999998544
No 390
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.23 E-value=2.7e+02 Score=27.96 Aligned_cols=10 Identities=50% Similarity=0.760 Sum_probs=7.7
Q ss_pred HHHHHHHhhh
Q 005476 629 EKLAIAFGLI 638 (695)
Q Consensus 629 ~~la~~~~~~ 638 (695)
+.||.+||.-
T Consensus 321 ~~MA~aFgVS 330 (393)
T KOG0687|consen 321 ESMAKAFGVS 330 (393)
T ss_pred HHHHHHhCch
Confidence 7788888864
No 391
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.63 E-value=1.2e+02 Score=32.76 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=17.2
Q ss_pred HHhcchhhcCCHHHHHHHHhcCC
Q 005476 363 ALMDFYAKCGLIENAVEVFKKMP 385 (695)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~ 385 (695)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 35566778888888888887775
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.50 E-value=36 Score=22.67 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=11.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHH
Q 005476 295 ISGYSQARRCKEALGVFHDMQM 316 (695)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~ 316 (695)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555554
No 393
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.38 E-value=3.9e+02 Score=29.58 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=84.9
Q ss_pred hhHHHHHHhccCCC-CeehHHHHH----HH-HHhCCChhHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHhccC--
Q 005476 172 IDIARKMFDRMSNR-DVFSWNSMF----SG-YVKTECWREIVDLFNEMRD-------LGVKFDEVTLINVLMACGRLA-- 236 (695)
Q Consensus 172 ~~~A~~~f~~m~~~-~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~ll~a~~~~~-- 236 (695)
...|.+.++..... +...-..+. .+ +....+.+.|+..|+...+ .| +......+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777665542 332222222 22 4566788888888888866 34 2223344444444422
Q ss_pred ---ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-ChhHHHHHHHHH----HhcCCHHHH
Q 005476 237 ---DIELGGWISEYMEEKELNGNVKLMTAVVDMYAK-CGHVDKARRLFEQMNIK-DVVAWSAMISGY----SQARRCKEA 307 (695)
Q Consensus 237 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~-~~~~~~~li~~~----~~~g~~~~A 307 (695)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...... .+.+.--+...| ....+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 4556777777777666 3333333322222222 23456666666665433 222222222111 122355666
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 005476 308 LGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKR 353 (695)
Q Consensus 308 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 353 (695)
..++++..+.| .|-..--...+..+.. +..+.+...+..+...|
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 66666666665 3322222222333333 55555555544444444
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.93 E-value=1.1e+02 Score=25.18 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005476 290 AWSAMISGYSQARRCKEALGVFHDMQM 316 (695)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (695)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999999877
No 395
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.63 E-value=42 Score=21.18 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChhHHHHH--HHHHHhcCCC
Q 005476 495 WRTLLAACRAHKNVKVGEES--LKNLVTLEPM 524 (695)
Q Consensus 495 ~~~ll~a~~~~g~~~~a~~~--~~~~~~~~p~ 524 (695)
|-.+.-.+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44455556677777777777 3355555553
No 396
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.73 E-value=73 Score=31.87 Aligned_cols=92 Identities=16% Similarity=0.099 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHH
Q 005476 462 HYGCMVDILGRAGLVEEAYQFIKNM----PIPP--NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDI 535 (695)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (695)
+|.-=.+-|.+..++..|...|.+. .-.| +.+.|+.-..+-...||+..++.-..+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3334456678888999999988775 1123 466777777777788999999999999999999999999888888
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 005476 536 YASAGRCEDALRVMNQMR 553 (695)
Q Consensus 536 ~~~~g~~~~a~~~~~~m~ 553 (695)
+....++++|....++..
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 888888777777666553
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.66 E-value=55 Score=30.26 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=18.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005476 489 PPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEP 523 (695)
Q Consensus 489 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 523 (695)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34555555555555555555555555555555554
No 398
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.60 E-value=2.8e+02 Score=26.89 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=104.5
Q ss_pred hcCCHHHHHHHHHHhHHCCCCCCHH---HHHHHHHHHhccCChhHHHHHHHHHHH---hCC--CCchHHHhHHhcchhhc
Q 005476 300 QARRCKEALGVFHDMQMANVVPNEV---TMVSVLSCCAVLGALETGKWVHLYVKK---KRM--ELTITLGTALMDFYAKC 371 (695)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~--~~~~~~~~~li~~y~~~ 371 (695)
+...+++|+.-|.+..+..-.-... .+..++....+.+++++....+.++.. +.+ ..+....|++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999998887653232333 444556677788888887776666543 111 23344566777766666
Q ss_pred CCHHHHHHHHhcCCC-----CChhHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CH-------HHHHHHH
Q 005476 372 GLIENAVEVFKKMPL-----KNVFFW----TVLIQCLASNGQGERALETYYIMREKNIEP----ND-------VAFIAVL 431 (695)
Q Consensus 372 g~~~~A~~~~~~~~~-----~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~-------~t~~~ll 431 (695)
.+.+--...++.-.+ +|...| +-+...|...|++.+..++++++.++--.- |. ..|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666655555543321 233333 345566777777777777777776542111 11 2345555
Q ss_pred HHHhccccHHHHHHHHHHchhhcCCCCChhHHHH----HHHHHhhcCCHHHHH-HHHHh
Q 005476 432 SACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGC----MVDILGRAGLVEEAY-QFIKN 485 (695)
Q Consensus 432 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~-~~~~~ 485 (695)
..|....+-.+-..++++......-.|.+..... =..+..+.|++++|. ++|+.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 6666666666666677665543233444433222 223445667777764 34443
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.09 E-value=75 Score=29.35 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 436 HVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
...+.+......+.+.+.....|+..+|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444443455677777777777777777777777776665
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.93 E-value=3.6e+02 Score=29.39 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCC-CcccHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 005476 500 AACRAHKNVKVGEESLKNLVTLEPM-HSGDYILLSDIYA-SAGRCEDALRVMNQMRE 554 (695)
Q Consensus 500 ~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 554 (695)
....+.|-+..|.+..+-+++++|. |+.....+++.|+ ++.++.--+++++....
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3445667777888888888888876 7777777777775 55566666666666543
No 401
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.68 E-value=30 Score=38.98 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=71.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 005476 402 NGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQ 481 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 481 (695)
++++++.+.+.+.-.--| -++|..+.+.|-.+-|+.+.+.=... .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456666665554432222 13444455666666665554332221 234557899999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 005476 482 FIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRV 548 (695)
Q Consensus 482 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 548 (695)
.-.++. |..+|..|......+||.+.|+..+++....+ .|+-+|.-.|+.++-.++
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE--------KLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh--------heeEEEEEeCCHHHHHHH
Confidence 888874 77889999999999999999999988875433 233344445555544333
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.67 E-value=3.2e+02 Score=27.00 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005476 259 LMTAVVDMYAKCGHVDKARRLFEQMNIK---DVVAWSAMISGYSQARRCKEALGVFHDMQM 316 (695)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (695)
+.+.....|..+|.+.+|..+-+....- +...|-.++..+...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667899999999999998887643 567888999999999998888888887753
No 403
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.19 E-value=2.2e+02 Score=27.30 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=47.0
Q ss_pred hhhcCCHHHHHHHHhcCCC--CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHH
Q 005476 368 YAKCGLIENAVEVFKKMPL--KNV-FFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEG 443 (695)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 443 (695)
|....+++.|...|.+... |++ .-|+.=+.++.+..+++.+..--.+.++ +.||.+ ....+.........+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4445566666666655432 444 3355566666677777776666666666 667666 333344444555566666
Q ss_pred HHHHHHc
Q 005476 444 RELFVSM 450 (695)
Q Consensus 444 ~~~~~~~ 450 (695)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6665554
No 404
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.12 E-value=2.9e+02 Score=26.31 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHc
Q 005476 371 CGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSM 450 (695)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 450 (695)
.+++++|.+.+-.-... .....-++.++...|+.+.|+.+++.+.-....+ .....++.+ ...+.+.+|..+-...
T Consensus 91 ~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred hHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 35667777666443221 1112236777777888888888887754322222 222223333 4447888888776655
Q ss_pred hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh
Q 005476 451 SRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPV 493 (695)
Q Consensus 451 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 493 (695)
... -....+..++..+.....-....+.+-.+|+.+...
T Consensus 167 ~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 167 PDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred chh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 331 113456666666654443233344444556665544
No 405
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.51 E-value=4.1e+02 Score=27.51 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=50.2
Q ss_pred HHHHhccccHHHHHHHHHHchhhcCCCC--ChhHHHHHHHHHh-hcCCHHHHHHHHHhCCC---------CCCHhhHHHH
Q 005476 431 LSACSHVGMVDEGRELFVSMSRDFDLEP--RMEHYGCMVDILG-RAGLVEEAYQFIKNMPI---------PPNPVIWRTL 498 (695)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~---------~p~~~~~~~l 498 (695)
+....+.|.+..|.++.+-+. .+.| |+.....+||.|+ ++++++--+++.+.... -|+ ..|+.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 345566677777777766664 3444 3444455566654 56666666666665421 111 233333
Q ss_pred HHHHHhcCCh---------------hHHHHHHHHHHhcCC
Q 005476 499 LAACRAHKNV---------------KVGEESLKNLVTLEP 523 (695)
Q Consensus 499 l~a~~~~g~~---------------~~a~~~~~~~~~~~p 523 (695)
+.-+ ..++. +.|.+.+.+++..-|
T Consensus 186 LA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 186 LAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHH-HhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 3333 33443 788888888888777
No 406
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.16 E-value=3.7e+02 Score=26.97 Aligned_cols=100 Identities=19% Similarity=0.060 Sum_probs=63.0
Q ss_pred ccccHHHHHHHHHHchhhcCC---CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 005476 436 HVGMVDEGRELFVSMSRDFDL---EPRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGE 512 (695)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 512 (695)
..+-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.+...+.+.-.
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHH
Confidence 344577888889888763111 34566667777777888887766666666544557777888999988899999999
Q ss_pred HHHHHHHhcC-CCCcccHHHHHHH
Q 005476 513 ESLKNLVTLE-PMHSGDYILLSDI 535 (695)
Q Consensus 513 ~~~~~~~~~~-p~~~~~~~~l~~~ 535 (695)
++++.++.-+ ......+..+..+
T Consensus 222 ~~l~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHHHHcCCcccccHHHHHHHHHH
Confidence 9999998843 2223344444433
No 407
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=42.12 E-value=2.2e+02 Score=27.88 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=10.6
Q ss_pred HHHHHhCCChhHHHHHHH
Q 005476 194 FSGYVKTECWREIVDLFN 211 (695)
Q Consensus 194 i~~~~~~g~~~~A~~~~~ 211 (695)
|.+++..++|.+++...-
T Consensus 90 IQALAEmnrWreVLsWvl 107 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVL 107 (309)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 556666666666655433
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.06 E-value=1.9e+02 Score=23.68 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=53.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHH
Q 005476 133 RIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNE 212 (695)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 212 (695)
.....++|..+.+.+...+- ....+.-.-+..+...|++++|+..=.....||...|-+|-. .+.|..+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34467888888888887662 344444455666778899999965555666688888877654 477877888887777
Q ss_pred HHHcC
Q 005476 213 MRDLG 217 (695)
Q Consensus 213 m~~~g 217 (695)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76554
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.85 E-value=1.4e+02 Score=23.42 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005476 370 KCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERAL 409 (695)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 409 (695)
..|+.+.|.++++.++ +....|...++++.+.|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577888888888888 88888888888888887766554
No 410
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.43 E-value=1.3e+02 Score=25.47 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 005476 205 EIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEK 251 (695)
Q Consensus 205 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 251 (695)
+..+-++.+..-++.|++......|++|.+.+|+..|.++++-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666778888888888999999999999888888877654
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.42 E-value=3.1e+02 Score=25.89 Aligned_cols=123 Identities=14% Similarity=0.082 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC----ChhHHHHH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP----RMEHYGCM 466 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l 466 (695)
.+..++.+.+.+...+|+.+.++-++ -+|... +-..++..++-.|++++|..-++-.- .+.| ....|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34556677777888888888777666 355443 55567777888888888876665542 2333 34455555
Q ss_pred HHHHhhcCCHHHHH-HHHHhC--CCCC--CHhhHHH-HHHHHH--hcCChhHHHHHHHHHHhcCCCCc
Q 005476 467 VDILGRAGLVEEAY-QFIKNM--PIPP--NPVIWRT-LLAACR--AHKNVKVGEESLKNLVTLEPMHS 526 (695)
Q Consensus 467 i~~~~~~g~~~~A~-~~~~~m--~~~p--~~~~~~~-ll~a~~--~~g~~~~a~~~~~~~~~~~p~~~ 526 (695)
|..- .+. ++|..- |.-+ ....|-. |+.+.. .-|..+....+-+..++..|...
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 5432 222 233321 1111 2334543 333332 22345556666667777666543
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.39 E-value=1.4e+02 Score=23.49 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=25.4
Q ss_pred hcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHH
Q 005476 168 NCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREI 206 (695)
Q Consensus 168 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 206 (695)
..|+.+.|+.+++.++ +....+..++.++-+.|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466777777777777 6666777777777666654443
No 413
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.24 E-value=1.5e+02 Score=24.91 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh-------cCCCCcccHH----HHHHHHHHcCCHHHHHHHHHHHH
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVT-------LEPMHSGDYI----LLSDIYASAGRCEDALRVMNQMR 553 (695)
Q Consensus 493 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~ 553 (695)
..+..|-.++...|++++++...++.+. ++.+.-..|+ +-+.++...|+.++|.+.|+...
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3344444555555555554444444432 3333322232 33456677899999998887643
No 414
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.05 E-value=2.4e+02 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=15.5
Q ss_pred HHHHHHhccccHHHHHHHHHHchh
Q 005476 429 AVLSACSHVGMVDEGRELFVSMSR 452 (695)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~~~~ 452 (695)
.-|.-|.+.|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445566677777777777766643
No 415
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.90 E-value=1.1e+02 Score=20.80 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=24.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005476 399 LASNGQGERALETYYIMREKNIEPNDVAFIAVLS 432 (695)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (695)
..+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777788888888888887777777766654
No 416
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.86 E-value=2.9e+02 Score=25.41 Aligned_cols=56 Identities=11% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCC--------------CCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005476 227 NVLMACGRLADIELGGWISEYMEEKEL--------------NGNVKLMTAVVDMYAKCGHVDKARRLFEQ 282 (695)
Q Consensus 227 ~ll~a~~~~~~~~~a~~~~~~~~~~g~--------------~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 282 (695)
+++-.|-+.-++.+++++++.+.+..+ .+.-.+.|.-...+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455566667777778777777765321 23345566667777777777777777764
No 417
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.45 E-value=2e+02 Score=31.99 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=39.4
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005476 187 VFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDM 266 (695)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 266 (695)
...|..-+..+...++.. ....+.+..+-.-.+......++..|.+.|-.+.+..+...+-..-+. ..-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 334555555554433222 445555544433445555667777777777777777776655443221 2335555666
Q ss_pred HHhcCCHHHHHHHHHhc
Q 005476 267 YAKCGHVDKARRLFEQM 283 (695)
Q Consensus 267 ~~~~g~~~~A~~~f~~m 283 (695)
+.++|+......+-+.+
T Consensus 448 ~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HH---------------
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 67777776665555544
No 418
>PRK09169 hypothetical protein; Validated
Probab=39.81 E-value=1e+03 Score=31.26 Aligned_cols=467 Identities=9% Similarity=0.011 Sum_probs=249.8
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhC-----CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh---C----CC
Q 005476 86 SSAYNIMIRAFTLKQSPQEAVMLYKTMLQN-----SVEPDRFTFACTLKACSRIRALEEGEQIHAQILKS---G----FG 153 (695)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g----~~ 153 (695)
...|..+...+++.-+.....+.+..+-.. .-..+...+..+|+++++=.+-..+...-..+... . ..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 344556666666655554444433332221 11235667888888888776655554443333111 0 12
Q ss_pred CCccHHHHHHHHHHhcCChhHHHHHHhccC----C-------CCeehHHHHHHHHHhCCChhHHHHHHHHH----HHc--
Q 005476 154 CRQLVTNTLIHLYANCGRIDIARKMFDRMS----N-------RDVFSWNSMFSGYVKTECWREIVDLFNEM----RDL-- 216 (695)
Q Consensus 154 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-- 216 (695)
.|..-...++++++|.-+-......-..+- . -+......++++++|-.+.+.+...-..+ ...
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 345555667777887665544433333221 1 13445566788888765544333322222 110
Q ss_pred -CCCCCHhHHHHHHHHHhccCChhHHHHHHHH----HHH---hCCCCchHHHHHHHHHHHhcCCHHHHHHHHH----hcC
Q 005476 217 -GVKFDEVTLINVLMACGRLADIELGGWISEY----MEE---KELNGNVKLMTAVVDMYAKCGHVDKARRLFE----QMN 284 (695)
Q Consensus 217 -g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~----~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~----~m~ 284 (695)
....|..-+...++++++..+-+.+...-.. +.. ..-..+..-....+++++|..+-+.+..... .+.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1124566688889999988765543322222 111 1123456666777888888887665433322 221
Q ss_pred -------CCChhHHHHHHHHHHhcCCHHH----HHHHHHHhHHC-C--CCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 005476 285 -------IKDVVAWSAMISGYSQARRCKE----ALGVFHDMQMA-N--VVPNEVTMVSVLSCCAVLGALETGKWVHLYVK 350 (695)
Q Consensus 285 -------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 350 (695)
.-+..-....+.++.+-++-+. |..+...+... + -..|..-...++++|++-+.-+.+......+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1144455566777777665432 33344443332 1 13567778899999998877664443332221
Q ss_pred H---h----CCCCchHHHhHHhcchhhcCCHHH----HHHHHhcCCC-------CChhHHHHHHHHHHhcCChHHHHH--
Q 005476 351 K---K----RMELTITLGTALMDFYAKCGLIEN----AVEVFKKMPL-------KNVFFWTVLIQCLASNGQGERALE-- 410 (695)
Q Consensus 351 ~---~----~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~-- 410 (695)
. . .-..+..-....+.+++|.++-+. +..+...+.. -+..-....+.++++-++.+....
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 1 1 123345555566777888776442 2333333321 245556778888988887665432
Q ss_pred --HHHHHHHC---CCCCCHHHHHHHHHHHhccccHHH----HHHHHHHchhhcC--CCCChhHHHHHHHHHhhcCCHHH-
Q 005476 411 --TYYIMREK---NIEPNDVAFIAVLSACSHVGMVDE----GRELFVSMSRDFD--LEPRMEHYGCMVDILGRAGLVEE- 478 (695)
Q Consensus 411 --l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~- 478 (695)
+...+... --.-|..-+...++++++-.+.+. +..+...+.++-+ -..+.......+.+++|.+.-..
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 33222221 122355567788899998776433 2333333322211 12345667778888888776432
Q ss_pred ---HHHHHHhC----C--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh---cCC-----CCcccHHHHHHHHHHcCC
Q 005476 479 ---AYQFIKNM----P--IPPNPVIWRTLLAACRAHKNVKVGEESLKNLVT---LEP-----MHSGDYILLSDIYASAGR 541 (695)
Q Consensus 479 ---A~~~~~~m----~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~ 541 (695)
|..+...+ + -.-|..-+..+++++.+-.+.+.+......+-. .++ -++-....+++++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 23333333 1 122667788899999988887766555444433 111 223345567777777776
Q ss_pred HHHHHHHHHHH
Q 005476 542 CEDALRVMNQM 552 (695)
Q Consensus 542 ~~~a~~~~~~m 552 (695)
.+.+.+....+
T Consensus 682 ~~~c~~Aa~aL 692 (2316)
T PRK09169 682 EAACRAAALAL 692 (2316)
T ss_pred cHHHHHHHHHH
Confidence 65544444444
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.56 E-value=34 Score=29.19 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005476 399 LASNGQGERALETYYIMREKNIEPNDVAFIAVLSAC 434 (695)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (695)
....|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999985 45555543
No 420
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.65 E-value=78 Score=34.15 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=64.1
Q ss_pred ccccHHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhcCChhHH
Q 005476 436 HVGMVDEGRELFVSMSRDFDLEPR--MEHYGCMVDILGRAGLVEEAYQFIKNM-PI-PPNPVIWRTLLAACRAHKNVKVG 511 (695)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a 511 (695)
-.|+...|...+.... ...|- ......|...+.+.|...+|..++.+. .+ ...+.++-++..++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566777776666554 33442 223445666777777777787776553 22 22455667777888888888888
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHH
Q 005476 512 EESLKNLVTLEPMHSGDYILLSDI 535 (695)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~ 535 (695)
++.++++++++|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888888887766655444
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.48 E-value=44 Score=28.54 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005476 99 KQSPQEAVMLYKTMLQNSVEPDRFTFACTLKAC 131 (695)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 131 (695)
.|.-.+|-.+|..|+++|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35566788888888888888874 67777654
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.31 E-value=4e+02 Score=26.23 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=77.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHhH-------HHHHHHHHhccCChhHHHHHHH----HHHHhCCCCchHHHH
Q 005476 193 MFSGYVKTECWREIVDLFNEMRDLGVKFDEVT-------LINVLMACGRLADIELGGWISE----YMEEKELNGNVKLMT 261 (695)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-------~~~ll~a~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~ 261 (695)
+.+-..+.+++++|+..+.+....|+..|..+ ...+...+...|+...-.+... .|....-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455667788888888888888887776554 4456666777776554333322 222222233445556
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCCHHHHHHHHHHh----HHCCCCCCHHHH
Q 005476 262 AVVDMYAKC-GHVDKARRLFEQMNI-----K----DVVAWSAMISGYSQARRCKEALGVFHDM----QMANVVPNEVTM 326 (695)
Q Consensus 262 ~li~~~~~~-g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~ 326 (695)
+|++.+... ..++.-+++.....+ + ....-.-+|..+.+.|.+.+|+.+...+ .+..-+|+..+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 666655433 335555555444321 1 1112345788889999999998765444 444445655544
No 423
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=37.86 E-value=4.8e+02 Score=27.01 Aligned_cols=171 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCC-------------------
Q 005476 402 NGQGERALETYYIMRE-----KNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLE------------------- 457 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------------------- 457 (695)
.++.+.|++-+-...+ .....+...+..+...|...++++.--+....+.+++|--
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~ 104 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTP 104 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCC
Q ss_pred ------------------------CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHH------------HHH
Q 005476 458 ------------------------PRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTL------------LAA 501 (695)
Q Consensus 458 ------------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~a 501 (695)
-....-..|...+-.+|++++|.+++.+.+ +.||+++ +.-
T Consensus 105 d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~----VETygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 105 DLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ----VETYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred CchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc----hhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcc-------cHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCceeEEEECCEEEE
Q 005476 502 CRAHKNVKVGEESLKNLVTLEPMHSG-------DYILLSDIYASAGRCEDALRVMNQMREQGIKKTPGCSLIELDGEIYE 574 (695)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~ 574 (695)
|...+|+-.|.-+.+++...--+++. .|..++......+.+=++-+.++..-+-|..+...--|+.+--.+-.
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~ 260 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVS 260 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhee
Q ss_pred ee
Q 005476 575 FL 576 (695)
Q Consensus 575 f~ 576 (695)
|+
T Consensus 261 f~ 262 (439)
T KOG1498|consen 261 FC 262 (439)
T ss_pred EE
No 424
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.85 E-value=5.1e+02 Score=27.34 Aligned_cols=172 Identities=10% Similarity=-0.004 Sum_probs=80.2
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 005476 92 MIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGR 171 (695)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 171 (695)
-|+++...| ..++..+....... ++...+.....++....+......+.+.+ -.++..+....+..+.+.+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCc
Confidence 366777777 46677666665432 23333433334443222222122222222 24455566777777777766
Q ss_pred hhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 005476 172 IDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEK 251 (695)
Q Consensus 172 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 251 (695)
.+....+..-...++...-...+.++...+. .+...+....+ .+|...-...+.+++..+..+....+. .+.
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~-~al-- 187 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLR-LYL-- 187 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHH-HHH--
Confidence 6666555555555555444444455544331 12233333332 344444455555555554433222211 221
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 005476 252 ELNGNVKLMTAVVDMYAKCGHVDKARRLFE 281 (695)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 281 (695)
-.+|..+-..-+.+....|. +.|.....
T Consensus 188 -~d~~~~VR~aA~~al~~lG~-~~A~~~l~ 215 (410)
T TIGR02270 188 -RDSDPEVRFAALEAGLLAGS-RLAWGVCR 215 (410)
T ss_pred -cCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Confidence 13445555555555555555 44444333
No 425
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.90 E-value=72 Score=30.11 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=25.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005476 505 HKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 554 (695)
.+|.+.+-+++.+++++-|+....|..++..-.++|+.+.|.+.+++..+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34444455555555555555555555555555555555555555554444
No 426
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.58 E-value=1.2e+02 Score=20.56 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=19.4
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 005476 198 VKTECWREIVDLFNEMRDLGVKFDEVTLINVLM 230 (695)
Q Consensus 198 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 230 (695)
.+.|-..++..++++|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355555666666666666666655555555443
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.56 E-value=66 Score=31.77 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005476 391 FWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVL 431 (695)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 431 (695)
-||..|..-.+.||+++|+.+++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47789999999999999999999999999876666776544
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.29 E-value=1.2e+02 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 005476 498 LLAACRAHKNVKVGEESLKNLVTLE 522 (695)
Q Consensus 498 ll~a~~~~g~~~~a~~~~~~~~~~~ 522 (695)
+.......|+.++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4445677888999998888888753
No 429
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.16 E-value=59 Score=31.93 Aligned_cols=61 Identities=16% Similarity=0.308 Sum_probs=34.4
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHH
Q 005476 470 LGRAGLVEEAYQFIKNM-PIPPN-PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYI 530 (695)
Q Consensus 470 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (695)
..+.|+.++|..+|+.. ...|+ +.+..-+..-.-.+++.-+|-+++-+++...|.++.+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 34667777777777653 33443 223333333334456666777777777777776655444
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.99 E-value=61 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=11.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHch
Q 005476 427 FIAVLSACSHVGMVDEGRELFVSMS 451 (695)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~~~ 451 (695)
...+|.++...|++++|.++.+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555555555444443
No 431
>PRK10941 hypothetical protein; Provisional
Probab=35.67 E-value=2.6e+02 Score=27.52 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchh
Q 005476 393 TVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSR 452 (695)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 452 (695)
+.+-.+|.+.++++.|+...+.+.. +.|+.. -+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4444555666666666666666655 445433 222223335555555555555554444
No 432
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.59 E-value=2.5e+02 Score=23.84 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHH
Q 005476 407 RALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFV 448 (695)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 448 (695)
++.++|+.|..+|+--... -|..-...+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544433322 33333334444455555554443
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.06 E-value=5.4e+02 Score=26.81 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=54.0
Q ss_pred HHhHHhcchhhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCH
Q 005476 360 LGTALMDFYAKCGLIENAVEVFKKMPL------KNVFFWTVLIQCLASNGQGERALETYYIMREK---------NIEPND 424 (695)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p~~ 424 (695)
...-+.+.|..||+++.|.+.|.+... .-+..|-.+|..-...|++........+..+. .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 445577889999999999999988653 12234556666666667777666666655542 122333
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHch
Q 005476 425 VAFIAVLSACSHVGMVDEGRELFVSMS 451 (695)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 451 (695)
..+..+..-+. ++++.|.+.|-...
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 34444433332 36666666665443
No 434
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.69 E-value=2.1e+02 Score=23.54 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=23.9
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005476 188 FSWNSMFSGYVKTECWREIVDLFNEMRD 215 (695)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 215 (695)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588889999999999999999998876
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.77 E-value=64 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMRE 417 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (695)
.-.+|.||.+.|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578899999999999998888765
No 436
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.64 E-value=3.9e+02 Score=24.75 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHhHHCC
Q 005476 262 AVVDMYAKCGHVDKARRLFEQMNIKDVVA--WSAMISGYSQARRCKEALGVFHDMQMAN 318 (695)
Q Consensus 262 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (695)
.|.......|.+|+|...++....++-.+ ...-...+...|+-++|..-|.+....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34555667778888888887777664332 3334456778888888888888777664
No 437
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.44 E-value=6e+02 Score=26.83 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHH---cCC-CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 005476 204 REIVDLFNEMRD---LGV-KFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRL 279 (695)
Q Consensus 204 ~~A~~~~~~m~~---~g~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (695)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+-..+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 444444444422 133 44444455554443 5777777777766654321111 1222222
Q ss_pred HHhc---CCCChhHHHHHHHHHHh---cCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccC
Q 005476 280 FEQM---NIKDVVAWSAMISGYSQ---ARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLG 337 (695)
Q Consensus 280 f~~m---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 337 (695)
+... ..++...+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++...|
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2221 12222334445555554 4789999999999999998887665555555554443
No 438
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.44 E-value=3.9e+02 Score=24.66 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=41.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHchhhcCC--------------CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 428 IAVLSACSHVGMVDEGRELFVSMSRDFDL--------------EPRMEHYGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
.+++-.|.+.-++.+++++++.|.+- .+ .+.-..-|.-...+.+.|.+|.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el-~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHEL-QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 35566778888888999888877531 21 233445667777888888898888888875
No 439
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=33.19 E-value=4.2e+02 Score=25.01 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHhcCChhHHHHHHhccCCCCee-hHHHHHHH--HHhCCChhHHHHHHHHHHH
Q 005476 156 QLVTNTLIHLYANCGRIDIARKMFDRMSNRDVF-SWNSMFSG--YVKTECWREIVDLFNEMRD 215 (695)
Q Consensus 156 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~ 215 (695)
+.++|-|.--+...|+++.|.+.|+...+-|.. -|..+=++ +---|++.-|.+-|...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 567777777777888888888888877664432 23322222 2235677777666655544
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.98 E-value=76 Score=31.39 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHhHH
Q 005476 189 SWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTL 225 (695)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 225 (695)
-||..|....+.||+++|+.++++.++.|+.--..||
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3567777777777777777777777777665444443
No 441
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.66 E-value=5e+02 Score=25.71 Aligned_cols=115 Identities=7% Similarity=0.055 Sum_probs=79.1
Q ss_pred CCHHHHHHHHhcCCC-----CChhHHHHHHHHHHh-cC-ChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccccHHHH
Q 005476 372 GLIENAVEVFKKMPL-----KNVFFWTVLIQCLAS-NG-QGERALETYYIMR-EKNIEPNDVAFIAVLSACSHVGMVDEG 443 (695)
Q Consensus 372 g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~g-~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a 443 (695)
..+.+|+++|+.... .|...-..++..... .+ ....-.++.+-+. ..|-.++..+...+|..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345677777773221 344444455555444 11 1122222333333 234678888899999999999999999
Q ss_pred HHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005476 444 RELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 444 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 486 (695)
.++++......+...|...|..+++.....|+..-..+++++-
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 9999988753345568889999999999999999999998874
No 442
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.50 E-value=6.5e+02 Score=26.98 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=5.2
Q ss_pred CCHHHHHHHhcc
Q 005476 69 TTMDYALSIFHK 80 (695)
Q Consensus 69 g~~~~A~~~f~~ 80 (695)
|+.+-...+++.
T Consensus 46 ~~~~ivk~Ll~~ 57 (480)
T PHA03100 46 RNIDVVKILLDN 57 (480)
T ss_pred CCHHHHHHHHHc
Confidence 444444444433
No 443
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=32.43 E-value=65 Score=30.39 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=31.7
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 470 LGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 470 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
..+.|+.+.|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555554 2223 34555555555566666666666666666666554
No 444
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.69 E-value=1.9e+02 Score=30.48 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 482 FIKNMPIPPN--PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 482 ~~~~m~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
+|....+.|. ..++++-++.+.+++|+..|-.+.+++++++|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3334445553 4466777888899999999999999999999854
No 445
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=31.20 E-value=52 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCcc
Q 005476 585 FKEVYDATENMMKRIKSAGYVPNTADA 611 (695)
Q Consensus 585 ~~~~~~~~~~l~~~m~~~g~~pd~~~~ 611 (695)
..++.+.+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456788888999999999999996655
No 446
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.15 E-value=5.3e+02 Score=25.46 Aligned_cols=159 Identities=9% Similarity=0.076 Sum_probs=88.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccccHHHHHHHHHHch---hhcCCCCChhHHHHH
Q 005476 397 QCLASNGQGERALETYYIMREKNIEPNDV-------AFIAVLSACSHVGMVDEGRELFVSMS---RDFDLEPRMEHYGCM 466 (695)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p~~~~~~~l 466 (695)
.-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+...... .++.-+.......+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 34456678889999999998888777654 44455666666666554433332211 111222234455566
Q ss_pred HHHHhhc-CCHHHHHHHHHhC---CCCCCH-----hhHHHHHHHHHhcCChhHHHHHHHHHHh----cC--CCCcccHHH
Q 005476 467 VDILGRA-GLVEEAYQFIKNM---PIPPNP-----VIWRTLLAACRAHKNVKVGEESLKNLVT----LE--PMHSGDYIL 531 (695)
Q Consensus 467 i~~~~~~-g~~~~A~~~~~~m---~~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~ 531 (695)
++.+... ..+++-+++.... ..+.+. ..-.-++..+.+.|.+..|.....-++. .+ |.-...|..
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 6655432 3344444444332 000000 1112356667778888888776655543 22 444455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 532 LSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
=+.+|.+..+..++..-+...+..
T Consensus 171 ESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHH
Confidence 677777777777777666666553
No 447
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.14 E-value=3.2e+02 Score=23.20 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCChhHHHHHHH
Q 005476 460 MEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWR-TLLAACRAHKNVKVGEESLK 516 (695)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~ 516 (695)
..+-.++..++.=.|..++|.++++..+..++-...| -++..|+...+-++-.++-+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444566666666777777777777665444433333 35555655555544444433
No 448
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.93 E-value=1.3e+02 Score=33.45 Aligned_cols=93 Identities=10% Similarity=0.120 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 005476 86 SSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHL 165 (695)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 165 (695)
...|..-+..+...++.. ....+.+..+-.-.+...-.-++..|.+.|-.+.+..+...+-..-+ ...-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 334666666665544322 55555555543334556677778888888877777777776544321 12335556667
Q ss_pred HHhcCChhHHHHHHhcc
Q 005476 166 YANCGRIDIARKMFDRM 182 (695)
Q Consensus 166 y~~~g~~~~A~~~f~~m 182 (695)
+.++|+...+..+-+.+
T Consensus 448 ~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HH---------------
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77888776665555444
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.74 E-value=2.7e+02 Score=21.96 Aligned_cols=62 Identities=16% Similarity=0.040 Sum_probs=37.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cccHHHHHHHHHHcCCH-HHHHHHHHHH
Q 005476 491 NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMH--SGDYILLSDIYASAGRC-EDALRVMNQM 552 (695)
Q Consensus 491 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~-~~a~~~~~~m 552 (695)
|....-.+...+...|+++.|.+.+-.+++.+|.. ...-..|+.++...|.- .-+.+.+.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45556666777788888888888888887776533 44555666666666663 3444444444
No 450
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.68 E-value=2.3e+02 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGM 439 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 439 (695)
-..++..+.+.++.-.|.++++++.+.+...+..|....|..+...|.
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 345566666666667777777777776666666666666666665554
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.29 E-value=9.5e+02 Score=28.18 Aligned_cols=209 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHH---CCCCCCHHHHHHHHHHHhccCCh--hHHHHHHHHHHHhCCCCchHHHhHHh
Q 005476 291 WSAMISGYSQARRCKEALGVFHDMQM---ANVVPNEVTMVSVLSCCAVLGAL--ETGKWVHLYVKKKRMELTITLGTALM 365 (695)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~t~~~ll~a~~~~~~~--~~a~~i~~~~~~~~~~~~~~~~~~li 365 (695)
|..|+.-|...|+.++|+++|.+... ..-.--..-+-.++..+-..+.. +...++-....+........+++..-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred cchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc------
Q 005476 366 DFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGM------ 439 (695)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 439 (695)
.--+.+=+.++... |......+-++.+++.+....-.++..-.+.++.-|...-+
T Consensus 587 ~~~~~sis~~~Vl~-------------------~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 587 KQEAESISRDDVLN-------------------YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCCHHHHHH-------------------HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Q ss_pred ----------HHHHHHHHHHchhhcCCC------CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 005476 440 ----------VDEGRELFVSMSRDFDLE------PRMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACR 503 (695)
Q Consensus 440 ----------~~~a~~~~~~~~~~~~~~------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~ 503 (695)
+.+=...|......|... |....|.-..-.++|.|+.++|+.++-..
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~----------------- 710 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE----------------- 710 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH-----------------
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 005476 504 AHKNVKVGEESLKNLVTLEPMHSGDYILLSDIY 536 (695)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (695)
.+|++.|..+.....+.++.+...|..+..+|
T Consensus 711 -L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 711 -LDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred -hcchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 452
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.71 E-value=4.8e+02 Score=24.94 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=18.8
Q ss_pred HhcCChHHHHHHHHHHHHCCC-CCCH
Q 005476 400 ASNGQGERALETYYIMREKNI-EPND 424 (695)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~-~p~~ 424 (695)
...|+++.|+++.+.+++.|. .|+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 467888889999888888874 3543
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.11 E-value=1.9e+02 Score=26.01 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=25.6
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 005476 416 REKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLV 476 (695)
Q Consensus 416 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (695)
...|++++..-. .++.........-.|.++++.+.+. +...+..|-.--++.+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 344554444322 2222222233344555555555443 3333444433444555555554
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.77 E-value=3.9e+02 Score=25.36 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHH
Q 005476 392 WTVLIQCLASNGQGERALETYYIMREKNIEP---NDVAF--IAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCM 466 (695)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 466 (695)
.|.||--|.-+..+.+|-+.|.+ +.|+.| |..++ ..-+......|++++|.+....+... -+..|.+.+--|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 45566555555556666666643 344555 22222 23455567778888888777766432 333343222222
Q ss_pred H----HHHhhcCCHHHHHHHHHh
Q 005476 467 V----DILGRAGLVEEAYQFIKN 485 (695)
Q Consensus 467 i----~~~~~~g~~~~A~~~~~~ 485 (695)
. --+.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 124677888888888775
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.16 E-value=1.6e+02 Score=28.55 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=7.0
Q ss_pred HhccccHHHHHHHHHHc
Q 005476 434 CSHVGMVDEGRELFVSM 450 (695)
Q Consensus 434 ~~~~g~~~~a~~~~~~~ 450 (695)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33344444444444433
No 456
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=28.16 E-value=22 Score=25.94 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=16.9
Q ss_pred ceEEEecCCcccccCcccccC
Q 005476 671 REIVVRDRTRFHHFKEGSCSC 691 (695)
Q Consensus 671 ~~~~~~~~~~~h~~~~g~cs~ 691 (695)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467889999999999998654
No 457
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.56 E-value=2.9e+02 Score=29.95 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=36.2
Q ss_pred HHHHHHHHccCCCCCHHHHHHHhccCCCCC-----cchHHHHHHHHHcCCCchHHHHHHHHHHhC
Q 005476 56 ENLLEAAAILIPATTMDYALSIFHKINEPD-----SSAYNIMIRAFTLKQSPQEAVMLYKTMLQN 115 (695)
Q Consensus 56 ~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 115 (695)
..|+.-|.++ +++++|..++..|.-.. ..+.+.+...+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~---~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRC---DQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhc---CCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 4678889999 99999999998886221 123344455555555445555555555543
No 458
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.53 E-value=2e+02 Score=22.44 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCCCCCHHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHH
Q 005476 37 NQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSPQEA 105 (695)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 105 (695)
..+...+++.|+- +..-.=...+.. .+.+.|.++.+-+|.+...+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~---tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAG---SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4566666666642 222222233344 6778888888888888888888888888777655443
No 459
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=27.49 E-value=5.8e+02 Score=25.92 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHhccccHHHHHHHHHHchhh----cCCCCChh-HHHH
Q 005476 396 IQCLASNGQGERALETYYIMREK---NIEPNDVAFI--AVLSACSHVGMVDEGRELFVSMSRD----FDLEPRME-HYGC 465 (695)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~p~~~-~~~~ 465 (695)
+...-+.++.++|++.++++.+. --.|+.+.|. .....+...|+.+++.++++...+. .+++|++. .|..
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 34444556777777777777652 2345666443 3444556677777777777766441 25555432 3444
Q ss_pred HHHHHh-hcCCHHHH
Q 005476 466 MVDILG-RAGLVEEA 479 (695)
Q Consensus 466 li~~~~-~~g~~~~A 479 (695)
+..-|. +.|++..+
T Consensus 162 lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHhHHHH
Confidence 444443 34555443
No 460
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.42 E-value=6.6e+02 Score=25.42 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh---cCCHHHHH
Q 005476 405 GERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGR---AGLVEEAY 480 (695)
Q Consensus 405 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~ 480 (695)
.+.-+.++++.++. .|+.. ....+|..+.+..+.++..+-++.+... .+-+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 34566778887775 45544 6667788888888888888888888763 22356666666665443 22355555
Q ss_pred HHHHhC---------CC------CC--CHhhHHHHHH---HHHhcCChhHHHHHHHHHHhcC---CCCcccHHHHHHHHH
Q 005476 481 QFIKNM---------PI------PP--NPVIWRTLLA---ACRAHKNVKVGEESLKNLVTLE---PMHSGDYILLSDIYA 537 (695)
Q Consensus 481 ~~~~~m---------~~------~p--~~~~~~~ll~---a~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~ 537 (695)
++|.+. +. .+ +......++. -..+.|..+.|..+++.+++++ |....
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~---------- 192 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLS---------- 192 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccc----------
Confidence 554432 10 01 1122222333 3578899999999999999976 43311
Q ss_pred HcCCHHHHHHHHHHHHhCCCc
Q 005476 538 SAGRCEDALRVMNQMREQGIK 558 (695)
Q Consensus 538 ~~g~~~~a~~~~~~m~~~~~~ 558 (695)
.....+..+.|+..-+.++.
T Consensus 193 -~~~~~~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 193 -SSSFSERLESFEEFWESEVP 212 (321)
T ss_pred -cccHHHHHHHHHHHhCcCCC
Confidence 11112556666666666553
No 461
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.03 E-value=2.5e+02 Score=21.89 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 005476 268 AKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEA 307 (695)
Q Consensus 268 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 307 (695)
+...+.+.|.++++.++.++..+|.....++-..|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677788888888888888888888777776655433
No 462
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.84 E-value=7.4e+02 Score=25.79 Aligned_cols=125 Identities=16% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc------CCHHHHHHHHHhCCCCCCHhhHHHHHHH-
Q 005476 429 AVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRA------GLVEEAYQFIKNMPIPPNPVIWRTLLAA- 501 (695)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~m~~~p~~~~~~~ll~a- 501 (695)
.......+.+++..|.++|+.+... .+.|....+-..+..++++ -++++|.+.++.+....+...|..+...
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~ 213 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHH
Q ss_pred --HHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHH------HHcCCHHHHHHHHHHHHh
Q 005476 502 --CRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIY------ASAGRCEDALRVMNQMRE 554 (695)
Q Consensus 502 --~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~------~~~g~~~~a~~~~~~m~~ 554 (695)
..+....-.+...-.+.....-..-..+..+.+++ +..|++++|...+-+..+
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 463
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=25.93 E-value=6.3e+02 Score=24.67 Aligned_cols=155 Identities=8% Similarity=0.052 Sum_probs=73.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh-----HHHHHHHHHHHHhCCCCCccHHHHH
Q 005476 88 AYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRAL-----EEGEQIHAQILKSGFGCRQLVTNTL 162 (695)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~L 162 (695)
-.+.++..+.+.|...+|+.+.+.+.... -=......++......... ......+....+.- .. ...|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~--~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~-f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLP--YFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QE-FPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCC--CcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-Hc-CcchHHH
Confidence 35567777777777777777777665421 1122222233221111100 11111222221110 00 1223344
Q ss_pred HHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCC-----CHhHHHHHHHHHhccC
Q 005476 163 IHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLG-VKF-----DEVTLINVLMACGRLA 236 (695)
Q Consensus 163 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-----d~~t~~~ll~a~~~~~ 236 (695)
+..|+|.=+...=..+|+....| ..|+.-+.+.|+.+.|-.++--+...+ ... +...-..++......+
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 44445544555555566655322 356667777777777777666664332 111 1222344555556666
Q ss_pred ChhHHHHHHHHHHHh
Q 005476 237 DIELGGWISEYMEEK 251 (695)
Q Consensus 237 ~~~~a~~~~~~~~~~ 251 (695)
+++.+.++.+.+...
T Consensus 235 ~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 235 DWDLCFELVRFLKAL 249 (258)
T ss_pred cHHHHHHHHHHHHHh
Confidence 666666666655543
No 464
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=25.92 E-value=1.7e+02 Score=28.62 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=47.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005476 497 TLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 497 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 555 (695)
.+=+++.+.++++.|....++.+.++|+++.-.---+-+|.+.|...-|++-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34455778888899999999999999888877777788888888888888888776553
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.76 E-value=3.3e+02 Score=21.35 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccC
Q 005476 142 QIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS 183 (695)
Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 183 (695)
++|+.....|+..|+.++..+++...-+=..+....+++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 667777777777777777777776655555555555555553
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.75 E-value=1.3e+02 Score=29.84 Aligned_cols=75 Identities=8% Similarity=0.049 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHH
Q 005476 458 PRMEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRT-LLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILL 532 (695)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (695)
-|+..|...+.-..+.|.+.+...++.+. ...| |+..|-. ----+..++|++.+..+|.+.++++|++|..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34555555554444555555555555554 2334 5666643 22235678899999999999999999988876643
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.74 E-value=1.6e+02 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=11.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 005476 192 SMFSGYVKTECWREIVDLFNEM 213 (695)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m 213 (695)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445555556666666666554
No 468
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.57 E-value=1.5e+02 Score=22.35 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=30.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 005476 400 ASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGM 439 (695)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 439 (695)
...|+.+.+.+++++....|..|..+....+..+....|.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999998888888877767666655553
No 469
>PRK12356 glutaminase; Reviewed
Probab=25.49 E-value=5.1e+02 Score=26.12 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccccHHHHHHHHHHchhhcCCCC-------ChhHHHHHHHHHhh
Q 005476 402 NGQGERALETYYIMREKNIEP-NDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEP-------RMEHYGCMVDILGR 472 (695)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------~~~~~~~li~~~~~ 472 (695)
.|+-..|+.. -|+..|.-+ |.. +.......|+-....+..-.+..-+. ..|+.| +..+-..+......
T Consensus 167 t~~RNrAlA~--~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LA-n~G~~P~tg~~vl~~~~~r~v~s~M~T 243 (319)
T PRK12356 167 TNFHNRAIAW--LLYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLA-AGGVNPLTGKRVVDADNVPYILAEMTM 243 (319)
T ss_pred hhHHHHHHHH--HHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHH-cCCcCCCCCCeecCHHHHHHHHHHHHH
Confidence 3444444433 355555432 322 44444555555555544444444442 236666 24455666677778
Q ss_pred cCCHHHHHHHHHhCC
Q 005476 473 AGLVEEAYQFIKNMP 487 (695)
Q Consensus 473 ~g~~~~A~~~~~~m~ 487 (695)
||.+|.+-++.-+.+
T Consensus 244 CGmYd~SG~fa~~VG 258 (319)
T PRK12356 244 EGLYERSGDWAYTVG 258 (319)
T ss_pred cCCccchhhHHHHhC
Confidence 888888887777663
No 470
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.23 E-value=8.6e+02 Score=26.03 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCCchh--HHHHHHH-----HHccCCCCCHHHHHHHhccCCC---CCcchHHHHHHHHH-cCCCchHHH
Q 005476 38 QVHAHLIKSRFHLNPTI--SENLLEA-----AAILIPATTMDYALSIFHKINE---PDSSAYNIMIRAFT-LKQSPQEAV 106 (695)
Q Consensus 38 ~~~~~~~~~g~~~~~~~--~~~ll~~-----y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~-~~g~~~~A~ 106 (695)
.+...+++.|..++... ..+.+.. .... |..+-+..+.+.-.. +|...++.|..+.. ..|+.
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~---~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~---- 121 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT---DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY---- 121 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh---chHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----
Confidence 45666677787665432 2233444 4555 777777666665433 23333444444432 44443
Q ss_pred HHHHHHHhCCCCCChh---hHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHhcCChhHHHHHH
Q 005476 107 MLYKTMLQNSVEPDRF---TFACTLKACSRIR--ALEEGEQIHAQILKSGFGCRQL--VTNTLIHLYANCGRIDIARKMF 179 (695)
Q Consensus 107 ~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f 179 (695)
++++.+.+.|..++.. ..+ .+..++..+ +. ++.+.+.+.|..++.. ...+.+...++.|+.+-+..++
T Consensus 122 ~iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll 196 (480)
T PHA03100 122 SIVEYLLDNGANVNIKNSDGEN-LLHLYLESNKIDL----KILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLL 196 (480)
T ss_pred HHHHHHHHcCCCCCccCCCCCc-HHHHHHHcCCChH----HHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHH
Confidence 3444455556554322 222 333334444 33 3455555666544322 2233455556666666666666
Q ss_pred hccC
Q 005476 180 DRMS 183 (695)
Q Consensus 180 ~~m~ 183 (695)
+.-.
T Consensus 197 ~~ga 200 (480)
T PHA03100 197 DNGA 200 (480)
T ss_pred HcCC
Confidence 5443
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.47 E-value=1.9e+02 Score=26.43 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=16.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 499 LAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 499 l~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
+..|.+.|.+++|.+++++..+ +|++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~ 143 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPES 143 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCc
Confidence 3456666666666666666666 4443
No 472
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=24.28 E-value=6.9e+02 Score=24.56 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHhHHCCCCC
Q 005476 303 RCKEALGVFHDMQMANVVP 321 (695)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p 321 (695)
+..+|..+|++..+.|..+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred CHHHHHHHHHHHHHcCChh
Confidence 5566666666666666433
No 473
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=23.90 E-value=4.6e+02 Score=22.34 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhhHHHH---HHHHh-------ccCChH
Q 005476 69 TTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACT---LKACS-------RIRALE 138 (695)
Q Consensus 69 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---l~~~~-------~~~~~~ 138 (695)
.++.-|..++......+ .....++.+.+..-.-.++++..++....-.|..+.-..+ ++.|- ..+...
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhh
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCChhHHHHHHhccCC
Q 005476 139 EGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN 184 (695)
Q Consensus 139 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 184 (695)
..-.+...+++.++......+..+-..+.+..+..+|-.+|+-+.+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk~ 126 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLKN 126 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHhC
No 474
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.85 E-value=3.6e+02 Score=29.44 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHhcc--ccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCC--CHh
Q 005476 420 IEPNDVAFIAVLSACSHV--GMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGR-AGLVEEAYQFIKNM-PIPP--NPV 493 (695)
Q Consensus 420 ~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p--~~~ 493 (695)
--|+..|.-.++.-...- ..-+-|-.+|..|.+ .+.|--...| +...|-| .|+...|...+... ..+| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346666665555433322 233456666666643 3444322222 2334544 68888888877664 3333 223
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005476 494 IWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 494 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 556 (695)
..-.|.....+.|-...|-.++.+.+.+....+-++..++++|....+.+.|++.|+...+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 334455566666777788899999998887777889999999999999999999999887654
No 475
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=23.72 E-value=3.3e+02 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=26.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCCccc
Q 005476 579 DNMCPHFKEVYDATENMMKRIKSAGYVPNTADAR 612 (695)
Q Consensus 579 ~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~ 612 (695)
...||.....-....++.....+.|+.|....-+
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl 90 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKL 90 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhc
Confidence 4678988888878888888888999998765443
No 476
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=23.48 E-value=57 Score=28.06 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.5
Q ss_pred EEEEccccccCCccchhhh
Q 005476 646 IRISKNLRVCTDCHNATKI 664 (695)
Q Consensus 646 ~~~~~~l~~~~~~~~~~~~ 664 (695)
+.|.||..+|--||+..-.
T Consensus 80 Yqvtkn~N~CLsCH~~e~s 98 (155)
T COG3043 80 YQVTKNTNRCLSCHSVENS 98 (155)
T ss_pred ceeecccchhhhccCHHHH
Confidence 7899999999999987643
No 477
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.21 E-value=8.8e+02 Score=25.38 Aligned_cols=124 Identities=11% Similarity=0.065 Sum_probs=74.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHH--------HHHHHhccccHHHHHHHHHHchhhcCCCCC----hhHHHHHHH
Q 005476 401 SNGQGERALETYYIMREKNIEPNDVAFIA--------VLSACSHVGMVDEGRELFVSMSRDFDLEPR----MEHYGCMVD 468 (695)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 468 (695)
..+++.+|..+-+.....-..-|..|+.. +-.++...|+...-..++....+...+.-| ....|+|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 34677777777666544322223333332 223455566666666666655544344433 345678888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHh---hHH----HHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 005476 469 ILGRAGLVEEAYQFIKNMPIPPNPV---IWR----TLLAACRAHKNVKVGEESLKNLVTLEPMH 525 (695)
Q Consensus 469 ~~~~~g~~~~A~~~~~~m~~~p~~~---~~~----~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 525 (695)
.|...+.++.|.+++.+... |+.. -|. -+...-+.++++..|.+.+-.++..-|.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~-pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVY-PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccC-ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 88888999999999988742 2211 121 12223456788888888888887776653
No 478
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=22.97 E-value=2.4e+02 Score=24.34 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccc
Q 005476 498 LLAACRAHKNVKVGEESLKNLVTLEPMHSGD 528 (695)
Q Consensus 498 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (695)
|.-++.+.++++++.++.+.+++.+|+|..+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4445667777777777777777777776543
No 479
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.41 E-value=1e+03 Score=25.77 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=15.8
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHh
Q 005476 199 KTECWREIVDLFNEMRDLGVKFDEV 223 (695)
Q Consensus 199 ~~g~~~~A~~~~~~m~~~g~~pd~~ 223 (695)
..++++.|+.++.+|...|..|...
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4566677777777776666555444
No 480
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.27 E-value=5.2e+02 Score=27.12 Aligned_cols=56 Identities=7% Similarity=0.013 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCC----------CCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 005476 464 GCMVDILGRAGLVEEAYQFIKNMPIP----------PNPVIWRTLLAACRAHKNVKVGEESLKNLV 519 (695)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~m~~~----------p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 519 (695)
-.|+...+-.|++..|++.++.+.+. -...++--+.-+|.-.+++..|.+.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777665221 123444555566667777777777777665
No 481
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.26 E-value=8e+02 Score=25.56 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHcCCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 005476 95 AFTLKQSPQEAVMLYKTMLQNSVEPDRF--TFACTLKACS--RIRALEEGEQIHAQILKS 150 (695)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 150 (695)
.+.+.+++..|.++|+.+..+ +.++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345788899999999998886 555554 3333444443 345677888888877654
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.05 E-value=4.1e+02 Score=23.19 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccC
Q 005476 292 SAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLG 337 (695)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 337 (695)
..++..+.+.++.-.|.++++++.+.+...+..|.-..|..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555555666666666666655555555555555544444
No 483
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.98 E-value=3.6e+02 Score=26.88 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005476 160 NTLIHLYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRD 215 (695)
Q Consensus 160 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 215 (695)
-.++..+.+.+++......+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666666666665553 333445567788889999999998888765
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.97 E-value=3.6e+02 Score=24.27 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=26.5
Q ss_pred hCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCh
Q 005476 114 QNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRI 172 (695)
Q Consensus 114 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 172 (695)
..|++++..-. .++..+...++.-.|.++++.+.+.+...+..|--.-++.+.+.|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34544443322 23333333344445566666666555444444333344555555543
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.86 E-value=4e+02 Score=24.43 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=21.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 005476 466 MVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAA 501 (695)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a 501 (695)
.+-.|.+.|.+++|.+++++.--.|+......-+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 345567777777777777776334554444443333
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.83 E-value=5e+02 Score=22.05 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcC--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 005476 510 VGEESLKNLVTLE--PMHSGDYILLSDIYASAGRCEDALRVMN 550 (695)
Q Consensus 510 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (695)
...++|..|.+.+ -.-+..|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3667788777644 4556678888999999999999999886
No 487
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.72 E-value=6.8e+02 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 005476 466 MVDILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~m 486 (695)
+..+..|.|+.++|.+.|.++
T Consensus 171 igeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 334444455555555555443
No 488
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.71 E-value=5.4e+02 Score=28.66 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=40.7
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCHH------HHHHHHHhcC-CCChhHHHHHHHH
Q 005476 227 NVLMACGRLADIELGGWISEYMEEKE--LNGNVKLMTAVVDMYAKCGHVD------KARRLFEQMN-IKDVVAWSAMISG 297 (695)
Q Consensus 227 ~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~f~~m~-~~~~~~~~~li~~ 297 (695)
+++.+|...|++..+.++++...... -..-...+|..++-..+.|.++ .|.+.+++.. .-|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888877776542 1222344555566666666543 3333333332 2245555555544
Q ss_pred H
Q 005476 298 Y 298 (695)
Q Consensus 298 ~ 298 (695)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 489
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=21.69 E-value=9e+02 Score=25.79 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=28.1
Q ss_pred CCCCCHhhHHHHHH-HHHhcCChhHHHHHHHHHHhc-----CCCCcccHHHHH
Q 005476 487 PIPPNPVIWRTLLA-ACRAHKNVKVGEESLKNLVTL-----EPMHSGDYILLS 533 (695)
Q Consensus 487 ~~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~l~ 533 (695)
|-.||...|-..-. .|+..|+++..+++|+.++.+ +|-++.+...+.
T Consensus 331 psh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssll 383 (615)
T KOG0508|consen 331 PSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLL 383 (615)
T ss_pred CCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH
Confidence 34566554433333 377788888888888877763 355555544443
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.57 E-value=3.7e+02 Score=26.79 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005476 263 VVDMYAKCGHVDKARRLFEQMNIKDVVAWSAMISGYSQARRCKEALGVFHDMQM 316 (695)
Q Consensus 263 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (695)
++..+.+.+++....+.+..+. .+..-...+..+...|++..|+++..+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444444444442 233344556667788888888888777654
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.47 E-value=2e+02 Score=23.68 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 005476 394 VLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVD 441 (695)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (695)
.++..+...+..-.|.++++++.+.+..++..|....|..+...|.+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345556666667788899999988887788888777788887777543
No 492
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=21.40 E-value=1.3e+03 Score=26.82 Aligned_cols=218 Identities=12% Similarity=0.025 Sum_probs=98.0
Q ss_pred HhcCCHHHHHHHHHhcC----CCC-------hhHHHHHHHH-HHhcCCHHHHHHHHHHhHHC----CCCCCHHHHHHHHH
Q 005476 268 AKCGHVDKARRLFEQMN----IKD-------VVAWSAMISG-YSQARRCKEALGVFHDMQMA----NVVPNEVTMVSVLS 331 (695)
Q Consensus 268 ~~~g~~~~A~~~f~~m~----~~~-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~pd~~t~~~ll~ 331 (695)
....++++|..+..+.. .++ ...|+++-.. ....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34556666666665542 221 1244444322 23456777777766655432 12233444555555
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchHHHhH---H--hcchhhcCCH--HHHHHHHhcCCC-----CC-----hhHHHH
Q 005476 332 CCAVLGALETGKWVHLYVKKKRMELTITLGTA---L--MDFYAKCGLI--ENAVEVFKKMPL-----KN-----VFFWTV 394 (695)
Q Consensus 332 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~---l--i~~y~~~g~~--~~A~~~~~~~~~-----~~-----~~~~~~ 394 (695)
+..-.|++++|..+.+...+..-..++..+.. + ...+...|.. .+.+..|..+.. .. +.....
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 66667777777776666555432223322221 1 1223334522 222223322211 11 122333
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccccHHHHHHHHHHchhhcCCCCC-hhHHH---HHH
Q 005476 395 LIQCLASN-GQGERALETYYIMREKNIEPNDVA--FIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR-MEHYG---CMV 467 (695)
Q Consensus 395 li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~---~li 467 (695)
+..++.+. +...++..-++--......|-... +..+.......|++++|....+++..- ...++ ..-|. +.+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHh
Confidence 33333331 112222222222222212222222 224556667788888888887777542 22221 11122 222
Q ss_pred H--HHhhcCCHHHHHHHHHhC
Q 005476 468 D--ILGRAGLVEEAYQFIKNM 486 (695)
Q Consensus 468 ~--~~~~~g~~~~A~~~~~~m 486 (695)
. .-...|+.++|.....+-
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhc
Confidence 2 233567777777766653
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.32 E-value=1.8e+02 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 005476 263 VVDMYAKCGHVDKARRLFEQMN 284 (695)
Q Consensus 263 li~~~~~~g~~~~A~~~f~~m~ 284 (695)
++.-|...|+.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3344444455555555555543
No 494
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.78 E-value=8.6e+02 Score=24.39 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=52.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHchhhcCCCCChhHHHHHHHHHh----------hcCCHHH
Q 005476 409 LETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILG----------RAGLVEE 478 (695)
Q Consensus 409 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----------~~g~~~~ 478 (695)
.++++.|...++.|....|..+.-.+++.=.+.....+++.+..+ ..-|..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888999999999998888877778877888899999988753 222444444333 2477777
Q ss_pred HHHHHHhCC
Q 005476 479 AYQFIKNMP 487 (695)
Q Consensus 479 A~~~~~~m~ 487 (695)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777653
No 495
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.58 E-value=4.2e+02 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=16.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh
Q 005476 126 CTLKACSRIRALEEGEQIHAQILKS 150 (695)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (695)
+|+.+|...|++..+.++++..+..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~ 57 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDH 57 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC
Confidence 5666676667766666666666543
No 496
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=20.51 E-value=4.9e+02 Score=28.05 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 005476 459 RMEHYGCMVDILGRAGLVEEAYQFIKNMPIPPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLE 522 (695)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 522 (695)
++..|-..+.-|...+++++|.++.+-.+ +...|.+|......+.+..-++.++..+.+.+
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~id 632 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQID 632 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchh
Confidence 34446667777888888999888877653 56678888887788888888887777776643
No 497
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=20.45 E-value=8e+02 Score=23.91 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=42.4
Q ss_pred CchHHHhHHhcchhhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005476 356 LTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACS 435 (695)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 435 (695)
-++.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 35677778888899999999998877554333333322222222222222222 222222233 345
Q ss_pred ccccHHHHHHHHHHchh
Q 005476 436 HVGMVDEGRELFVSMSR 452 (695)
Q Consensus 436 ~~g~~~~a~~~~~~~~~ 452 (695)
..+++..|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56778888877766654
Done!