Query 005476
Match_columns 695
No_of_seqs 779 out of 4742
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 17:50:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005476.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1985-1989//hhsearch_pdb/005476hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 344.1 36.9 518 23-556 26-580 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 307.0 28.5 480 49-538 81-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 217.1 18.9 210 105-336 9-223 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 213.0 19.3 184 87-270 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 195.5 41.7 372 95-541 8-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 193.4 39.0 351 195-555 7-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 187.4 33.1 438 87-556 7-479 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 180.6 31.9 422 85-556 24-492 (537)
9 2gw1_A Mitochondrial precursor 1.0 1 1 171.2 34.7 445 52-532 6-489 (514)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 166.9 35.1 146 388-538 210-375 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=344.15 Aligned_cols=518 Identities=9% Similarity=-0.015 Sum_probs=430.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 78999850399739999999998469988105889999987039999978899996017999910399999999819994
Q 005476 23 KTLIVQQCKTTKDLNQVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFTLKQSP 102 (695)
Q Consensus 23 ~~~~l~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 102 (695)
+..+...+.....++++|......+....+.. .....+.++ |.+..+...|+.++.++...|+.++..+.+.|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 100 (597)
T 2xpi_A 26 ANAAYMTPPSMGALNANNSNSQLSTLTISPMT--YLANNTSTD---GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQY 100 (597)
T ss_dssp -------------------CTTSCGGGGCGGG--GGC------------------------CHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCCCHHHHHHCCCCCCCCCEEECHHH--HHCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88870699207788632231223112225035--404566556---7667887754663378999999999999874583
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 37999999988699999930099999998422992899999999999299998308999999999349955899998006
Q 005476 103 QEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRM 182 (695)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 182 (695)
++|+.+|++|.. ..|+..++..+..++...|+++.|..+++.+... +++..+++.++.+|.+.|++++|..+|+++
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 479999999996--0899357999999999747699999999987335--456508999999999886699999998424
Q ss_pred CCC-------------------CEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHCCCCHHH--
Q ss_conf 999-------------------902099999999818992599999999888599988847-9999999804487347--
Q 005476 183 SNR-------------------DVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVT-LINVLMACGRLADIEL-- 240 (695)
Q Consensus 183 ~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~-- 240 (695)
... +..+|+.++.+|.+.|++++|.++|++|.+.+ |+... +..+...+...+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 886322323433432112351258999998899998399899999999999729--325699999998503461567899
Q ss_pred HHHH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999-99999917787357999999999953999999999983477--88468898988988429977999999996878
Q 005476 241 GGWI-SEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI--KDVVAWSAMISGYSQARRCKEALGVFHDMQMA 317 (695)
Q Consensus 241 a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (695)
...+ +..+...+......+++.++..|.+.|++++|.++|+++.. ++..+|+.++..|.+.|++++|+.+|+++...
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 98657742344308899999999999980731399999999876438830999999999999846899999999999972
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHCCCC---CCHHHHHH
Q ss_conf 988788999999999850089268999999999918988647886881302312997999999810999---99428999
Q 005476 318 NVVPNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTV 394 (695)
Q Consensus 318 g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 394 (695)
+ +.+..++..++..+...|+.+.+..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.. .+..+|+.
T Consensus 335 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 412 (597)
T 2xpi_A 335 D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412 (597)
T ss_dssp C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9-5537999999999998277779999999998518-3547999999999998356999999999998729777899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999964994899999999998999989999999999986105499999999983541298887528999999976439
Q 005476 395 LIQCLASNGQGERALETYYIMREKNIEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAG 474 (695)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 474 (695)
++.+|.+.|++++|+++|++|...+ +.+..++..++.+|.+.|++++|.++|+.+... .+.+...|..++..|.+.|
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHC
T ss_conf 9999997577799999999999868-134389999999999857999999999999984--8887679999999999818
Q ss_pred CHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 999999999849-------99999--856999999999238945999999998841899963099999999973997899
Q 005476 475 LVEEAYQFIKNM-------PIPPN--PVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDA 545 (695)
Q Consensus 475 ~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (695)
++++|.++++++ +..|+ ..+|..++.+|...|++++|...++++++.+|++..+|..++.+|...|++++|
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999999998532345453549999999999999804799999999999973899738999999999981789999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998489
Q 005476 546 LRVMNQMREQG 556 (695)
Q Consensus 546 ~~~~~~m~~~g 556 (695)
.+.++++.+..
T Consensus 570 ~~~~~~~l~~~ 580 (597)
T 2xpi_A 570 ITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHCC
T ss_conf 99999997208
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=306.96 Aligned_cols=480 Identities=7% Similarity=-0.030 Sum_probs=406.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC--CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9881058899999870399999788999960179--99910399999999819994379999999886999999300999
Q 005476 49 HLNPTISENLLEAAAILIPATTMDYALSIFHKIN--EPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFAC 126 (695)
Q Consensus 49 ~~~~~~~~~li~~y~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 126 (695)
.+++..++.++..|.+. |++++|..+|+++. .|+..+|..++..|.+.|++++|+.+|+.+.. ..++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~ 155 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQ---QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYL 155 (597)
T ss_dssp -CHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCHHHHHH
T ss_conf 78999999999999874---583479999999996089935799999999974769999999998733--5456508999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHH---------------CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCC---CEE
Q ss_conf 999984229928999999999992---------------99998308999999999349955899998006999---902
Q 005476 127 TLKACSRIRALEEGEQIHAQILKS---------------GFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSNR---DVF 188 (695)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~ 188 (695)
++..+.+.|++++|.++++.+... +.+.+..+++.++..|.+.|++++|...|+++.+. +..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999988669999999842488632232343343211235125899999889999839989999999999972932569
Q ss_pred HHHHHHHHHHHCCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 09999999981899259999--9-99988859998884799999998044873479999999999177873579999999
Q 005476 189 SWNSMFSGYVKTECWREIVD--L-FNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVD 265 (695)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 265 (695)
.|..+...+...+..+.+.. + +..+...+..+...+|..++..+.+.|+++.|..+++.+.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHH
T ss_conf 999999850346156789998657742344308899999999999980731399999999876438--830999999999
Q ss_pred HHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99953999999999983477---884688989889884299779999999968789887889999999998500892689
Q 005476 266 MYAKCGHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETG 342 (695)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 342 (695)
.|.+.|++++|.++|+++.. .+..+|+.++.++.+.|+.++|..+++++.... +.+..++..+...+.+.|+++.|
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99984689999999999997295537999999999998277779999999998518-35479999999999983569999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999918988647886881302312997999999810999---994289999999996499489999999999899
Q 005476 343 KWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKN 419 (695)
Q Consensus 343 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 419 (695)
..++..+.+.. +.+...++.++.+|.+.|++++|.++|+++.. .+...|+.++..|.+.|++++|.++|+++.+..
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999998729-77789999999999975777999999999998681343899999999998579999999999999848
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHC---CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CH
Q ss_conf 99899999999999861054999999999835412---98887--528999999976439999999999849-9999-98
Q 005476 420 IEPNDVAFIAVLSACSHVGMVDEGRELFVSMSRDF---DLEPR--MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NP 492 (695)
Q Consensus 420 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 492 (695)
+.+..++..+...+.+.|++++|.++|+.+.... +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +.
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred -CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
T ss_conf -8876799999999998189999999999999853234545354999999999999980479999999999997389973
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5699999999923894599999999884189996309999999997
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYAS 538 (695)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (695)
.+|..+..+|...|++++|.+.++++++++|+++..+..++.+|..
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 8999999999981789999999999972088874899999998743
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=217.06 Aligned_cols=210 Identities=12% Similarity=0.083 Sum_probs=135.0
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 999999988699999930-0999999984229928999999999992999983089999999993499558999980069
Q 005476 105 AVMLYKTMLQNSVEPDRF-TFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMS 183 (695)
Q Consensus 105 A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 183 (695)
+..+.+.+.+++..+.+. .+..+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+....+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH--------
T ss_conf 999999999826668979999999999985989999999999999818998783999999999857830433--------
Q ss_pred CCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99902099999999818992599999999888599988847999999980448734799999999991778735799999
Q 005476 184 NRDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAV 263 (695)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 263 (695)
.+.+..+.|.++|++|...|+.||..||+.++.+|++.|+++.|..+++.|.+.|+.||..+|+.+
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHH
T ss_conf --------------321249999999999998089998999999999998469778899999999972898861110489
Q ss_pred HHHHHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 999995399999999998347----7884688989889884299779999999968789887889999999998500
Q 005476 264 VDMYAKCGHVDKARRLFEQMN----IKDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVL 336 (695)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 336 (695)
+.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+...
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 99999888999999999999862999999999999999853898999999999999948996999999999998307
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=212.96 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 03999999998199943799999998869999993009999999842299---------289999999999929999830
Q 005476 87 SAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRA---------LEEGEQIHAQILKSGFGCRQL 157 (695)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 157 (695)
..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999998598999999999999981899878399999999985783043332124999999999999808999899
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCC----CCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 899999999934995589999800699----9902099999999818992599999999888599988847999999980
Q 005476 158 VTNTLIHLYANCGRIDIARKMFDRMSN----RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACG 233 (695)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 233 (695)
+|+.||.+|++.|++++|..+|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999984697788999999999728988611104899999988899999999999986299999999999999985
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 4487347999999999917787357999999999953
Q 005476 234 RLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKC 270 (695)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 270 (695)
+.|+.+.|.++++.|.+.|..|+..+++.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 3898999999999999948996999999999998307
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=195.48 Aligned_cols=372 Identities=11% Similarity=0.100 Sum_probs=218.7
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 99819994379999999886999999300999999984229928999999999992999983089999999993499558
Q 005476 95 AFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDI 174 (695)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 174 (695)
.+.+.|++++|++.+..+.+.. +.+...+..+...+...++++.+...+....+.. +.+...+..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9987799999999999999849-7889999999999998689999999999997619-7866999999999987799999
Q ss_pred HHHHHHCCCC--C-CEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9999800699--9-902099999999818992599999999888599988847999999980448734799999999991
Q 005476 175 ARKMFDRMSN--R-DVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEK 251 (695)
Q Consensus 175 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 251 (695)
|...|+++.. | +..+|..+...+.+.|++++|...|+++. +.
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~ 130 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL-----------------------------------QY 130 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-----------------------------------HH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------------HH
T ss_conf 9999999987496539999999999998589999999999999-----------------------------------75
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 7787357999999999953999999999983477---8846889898898842997799999999687898878899999
Q 005476 252 ELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVS 328 (695)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 328 (695)
. +.+...+..+...+...|++++|.+.|+++.. .+..+|..+...+...|++++|+..|+++.... +.+...+..
T Consensus 131 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHH
T ss_conf 9-89689999999999984689999999999987298978999999999998599999999999998559-886799999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99998500892689999999999189886478868813023129979999998109999942899999999964994899
Q 005476 329 VLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPLKNVFFWTVLIQCLASNGQGERA 408 (695)
Q Consensus 329 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 408 (695)
+...+...++++.+...+..+.... ..+...|..+...+...|++++|
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~--------------------------------p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLS--------------------------------PNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--------------------------------CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999998578999999999998529--------------------------------68789999999999986889999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-
Q ss_conf 999999998999989-999999999986105499999999983541298887528999999976439999999999849-
Q 005476 409 LETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM- 486 (695)
Q Consensus 409 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 486 (695)
+..|+++.. ..|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|...++++
T Consensus 257 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 257 IDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999986--49998899999999999869979999999999864--94449999999999998489999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9999-985699999999923894599999999884189996309999999997399
Q 005476 487 PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGR 541 (695)
Q Consensus 487 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (695)
...| +..++..+...+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 60987399997799999986888999999999986199978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=193.36 Aligned_cols=351 Identities=13% Similarity=0.099 Sum_probs=255.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 9998189925999999998885999888-479999999804487347999999999917787357999999999953999
Q 005476 195 SGYVKTECWREIVDLFNEMRDLGVKFDE-VTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHV 273 (695)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 273 (695)
..+.+.|++++|...+..+... .|+. ..+..+...+...++.+.+...+....+.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 9998779999999999999984--97889999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999983477---8846889898898842997799999999687898878-899999999985008926899999999
Q 005476 274 DKARRLFEQMNI---KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPN-EVTMVSVLSCCAVLGALETGKWVHLYV 349 (695)
Q Consensus 274 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~ 349 (695)
++|...|+++.. .+..+|..+...+.+.|++++|+..|.++.... |+ ...+..+...+...|+++.|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999987496539999999999998589999999999999759--896899999999999846899999999999
Q ss_pred HHHCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HH
Q ss_conf 9918988647886881302312997999999810999---9942899999999964994899999999998999989-99
Q 005476 350 KKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DV 425 (695)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 425 (695)
.+.. +.+...+..+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..|++... ..|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 8729-897899999999999859999999999999855988679999999999985789999999999985--2968789
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHH
Q ss_conf 9999999986105499999999983541298887528999999976439999999999849-9-9999856999999999
Q 005476 426 AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEHYGCMVDILGRAGLVEEAYQFIKNM-P-IPPNPVIWRTLLAACR 503 (695)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~ 503 (695)
++..+...+...|++++|...|+.+.. ..+.+...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999986889999999999986--499988999999999998699799999999998649444999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 2389459999999988418999630999999999739978999999999848
Q 005476 504 AHKNVKVGEESLKNLVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQ 555 (695)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (695)
..|++++|...++++++..|++...+..++.+|...|++++|...++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8489999999999998609873999977999999868889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=187.38 Aligned_cols=438 Identities=10% Similarity=-0.009 Sum_probs=262.7
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 03999999998199943799999998869999993009999999842299289999999999929999830899999999
Q 005476 87 SAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLY 166 (695)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 166 (695)
..|......+.+.|++++|+..|+++.... |+...+..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_conf 999998789998602789999999998559--227899868899998854999999998776069-37899999888999
Q ss_pred HHCCCHHHHHHHHHCCCC---CCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 934995589999800699---99020999999998189925999999998885999888479999999804487347999
Q 005476 167 ANCGRIDIARKMFDRMSN---RDVFSWNSMFSGYVKTECWREIVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGW 243 (695)
Q Consensus 167 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 243 (695)
.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-.........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN------ 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC------
T ss_conf 98766888999999999559875113789999999999999999999989999876651267724678863447------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH---
Q ss_conf 9999999177873579999999999539999999999834778-84688989889884---2997799999999687---
Q 005476 244 ISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIK-DVVAWSAMISGYSQ---ARRCKEALGVFHDMQM--- 316 (695)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~--- 316 (695)
.|+...... +.......... ..+..+ +...+......+.. .|++++|+..|+++..
T Consensus 158 ----------~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 158 ----------LPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ----------CCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHH----HHHHCCHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf ----------861589999----98625878888---8725995888999989999876233229999999999998866
Q ss_pred --CCCC--------CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHCCCC
Q ss_conf --8988--------788999999999850089268999999999918988647886881302312997999999810999
Q 005476 317 --ANVV--------PNEVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMPL 386 (695)
Q Consensus 317 --~g~~--------pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 386 (695)
.... .+...+..+...+...|+++.|...+..+.+.... ...+..+...|...|++++|...++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 5422381001148278999999999999878999999999999863864--89999999999988889999999999861
Q ss_pred ---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCHHH
Q ss_conf ---994289999999996499489999999999899998-9999999999986105499999999983541298887528
Q 005476 387 ---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP-NDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRMEH 462 (695)
Q Consensus 387 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 462 (695)
.+...|..+...+...|++++|+..|+++... .| +...+..+...+...|++++|...+..+... .+.+...
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 374 (514)
T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV 374 (514)
T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHH
T ss_conf 38677899999999999807799999999999873--8502899999999999868999999999999987--5467789
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 999999976439999999999849----99999----8569999999992---389459999999988418999630999
Q 005476 463 YGCMVDILGRAGLVEEAYQFIKNM----PIPPN----PVIWRTLLAACRA---HKNVKVGEESLKNLVTLEPMHSGDYIL 531 (695)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (695)
+..+...+.+.|++++|...++++ +..++ ...|..+...+.. .|+++.|...++++++..|.+...+..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999878899999999999997612332178999999999999866332588899999999998758555899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9999997399789999999998489
Q 005476 532 LSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~~g 556 (695)
++.+|...|++++|...+++..+..
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 9999998257999999999998766
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=180.62 Aligned_cols=422 Identities=11% Similarity=0.004 Sum_probs=272.8
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 91039999999981999437999999988699999930099999998422992899999999999299998308999999
Q 005476 85 DSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIH 164 (695)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 164 (695)
....|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|+++.|.+.+..+.+.. +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_conf 89999999999998642999999999998638-9984899999999998689999999999998609-862899999999
Q ss_pred HHHHCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 9993499558999980069999020999999998189925999999998885------9998884799999998044873
Q 005476 165 LYANCGRIDIARKMFDRMSNRDVFSWNSMFSGYVKTECWREIVDLFNEMRDL------GVKFDEVTLINVLMACGRLADI 238 (695)
Q Consensus 165 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~ 238 (695)
.|...|++++|...|+.+. .+....+..+..+...+....+...++.+... ...|+...+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----------- 169 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----------- 169 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH-----------
T ss_pred HHHHCCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-----------
T ss_conf 9998389999999999986-4878785889999987789889999999997474545434506757999-----------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHH---HHHHHHHHHH--------HCCCHHHH
Q ss_conf 479999999999177873579999999999539999999999834778846---8898988988--------42997799
Q 005476 239 ELGGWISEYMEEKELNGNVKLMTAVVDMYAKCGHVDKARRLFEQMNIKDVV---AWSAMISGYS--------QARRCKEA 307 (695)
Q Consensus 239 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~--------~~g~~~~A 307 (695)
+....+.+.+...+......+.. .+..+...+. ..+++++|
T Consensus 170 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 170 ----------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp ----------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------------------9974474999998763256461789999999878876402068888799999
Q ss_pred HHHHHHHHHCCCCCC--------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCHHHHHH
Q ss_conf 999999687898878--------899999999985008926899999999991898864788688130231299799999
Q 005476 308 LGVFHDMQMANVVPN--------EVTMVSVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVE 379 (695)
Q Consensus 308 ~~~~~~m~~~g~~pd--------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 379 (695)
+.+|+++.... |+ ..++..+...+...|+++.+...+..+.+.... ...+..+...|...|++++|..
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999878--7740445999999999999987545578999999999866987--4699999999998037999999
Q ss_pred HHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCC
Q ss_conf 9810999---9942899999999964994899999999998999989-99999999998610549999999998354129
Q 005476 380 VFKKMPL---KNVFFWTVLIQCLASNGQGERALETYYIMREKNIEPN-DVAFIAVLSACSHVGMVDEGRELFVSMSRDFD 455 (695)
Q Consensus 380 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 455 (695)
.|+++.. .+...|..+...+...|++++|+..|+++.. ..|+ ...+..+...+...|++++|...++.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 373 (537)
T 3fp2_A 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-- 373 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
T ss_conf 99997545999879999999999866899999999999998--59997799999999999847799999999999873--
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCC----CCHHHHHHHHHHHHHC----------CCHHHHHHHHHH
Q ss_conf 8887528999999976439999999999849----999----9985699999999923----------894599999999
Q 005476 456 LEPRMEHYGCMVDILGRAGLVEEAYQFIKNM----PIP----PNPVIWRTLLAACRAH----------KNVKVGEESLKN 517 (695)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~----p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~ 517 (695)
.+.+...+..+...+...|++++|...++++ +.. .....+......+... |+++.|...+++
T Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99985999999999988378899999999998709762446888999998899999976401002247579999999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 884189996309999999997399789999999998489
Q 005476 518 LVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQMREQG 556 (695)
Q Consensus 518 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 556 (695)
+++..|.+...+..++.+|...|++++|...+++..+..
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 997499978999999999998514999999999999868
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=171.21 Aligned_cols=445 Identities=9% Similarity=-0.068 Sum_probs=277.4
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC--CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 1058899999870399999788999960179--99910399999999819994379999999886999999300999999
Q 005476 52 PTISENLLEAAAILIPATTMDYALSIFHKIN--EPDSSAYNIMIRAFTLKQSPQEAVMLYKTMLQNSVEPDRFTFACTLK 129 (695)
Q Consensus 52 ~~~~~~li~~y~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 129 (695)
...+..+...|.+. |++++|...|+++. .|+...|..+...+...|++++|+..++.+.+.. +.+...+..+..
T Consensus 6 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRN---KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf 79999987899986---02789999999998559227899868899998854999999998776069-378999998889
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC----CCEEHHHHHHHHHHHCCCHHH
Q ss_conf 9842299289999999999929999830899999999934995589999800699----990209999999981899259
Q 005476 130 ACSRIRALEEGEQIHAQILKSGFGCRQLVTNTLIHLYANCGRIDIARKMFDRMSN----RDVFSWNSMFSGYVKTECWRE 205 (695)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~ 205 (695)
++...|++++|...+..+.+.+ +.+......++..+.+......+...+..+.. ++...++..........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 156 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE---- 156 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC----
T ss_conf 9998766888999999999559-87511378999999999999999999998999987665126772467886344----
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHH
Q ss_conf 9999999888599988847999999980448734799999999991778735799999999995---3999999999983
Q 005476 206 IVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVDMYAK---CGHVDKARRLFEQ 282 (695)
Q Consensus 206 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~ 282 (695)
..|+.......+..+........ ..-+.+...+..+...+.. .|+++.|...|++
T Consensus 157 ------------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 157 ------------NLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHCCHHHHHHH----------HCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf ------------78615899999862587888887----------25995888999989999876233229999999999
Q ss_pred CCC-----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 477-----------------884688989889884299779999999968789887889999999998500892689999
Q 005476 283 MNI-----------------KDVVAWSAMISGYSQARRCKEALGVFHDMQMANVVPNEVTMVSVLSCCAVLGALETGKWV 345 (695)
Q Consensus 283 ~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i 345 (695)
+.. .+...|..+...+...|++++|+..|+++.... |+...+..+...+...|+++.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99886654223810011482789999999999998789999999999998638--6489999999999988889999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999991898864788688130231299799999981099---9994289999999996499489999999999899998
Q 005476 346 HLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP---LKNVFFWTVLIQCLASNGQGERALETYYIMREKNIEP 422 (695)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 422 (695)
+..+.+.. +.+...+..+...|...|++++|...|++.. ..+...|..+...+...|++++|+..++++... .|
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 369 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FP 369 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
T ss_conf 99986138-6778999999999998077999999999998738502899999999999868999999999999987--54
Q ss_pred -CHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHC-CCCC-CH
Q ss_conf -9999999999986105499999999983541298887----5289999999764---39999999999849-9999-98
Q 005476 423 -NDVAFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPR----MEHYGCMVDILGR---AGLVEEAYQFIKNM-PIPP-NP 492 (695)
Q Consensus 423 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~ 492 (695)
+...+..+...+...|++++|...++.+.....-.+. ...+..+...+.. .|++++|...+++. ...| +.
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 67789999999998788999999999999976123321789999999999998663325888999999999987585558
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 5699999999923894599999999884189996309999
Q 005476 493 VIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYILL 532 (695)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (695)
..|..+...+...|+++.|...+++++++.|.+...+..+
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999982579999999999987661468899999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=166.88 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH-HHHH------------HHHHHHCCCCHHHHHHHHHHCHHHC
Q ss_conf 94289999999996499489999999999899998999-9999------------9999861054999999999835412
Q 005476 388 NVFFWTVLIQCLASNGQGERALETYYIMREKNIEPNDV-AFIA------------VLSACSHVGMVDEGRELFVSMSRDF 454 (695)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~------------ll~a~~~~g~~~~a~~~~~~~~~~~ 454 (695)
+...|..+...|...|++++|+..|+++.. ..|+.. .+.. +...+...|++++|...|+.+...
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~- 286 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT- 286 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-
T ss_conf 879999999999975999999999999987--59980899999999999999999999998717999999999999850-
Q ss_pred CCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98887-----528999999976439999999999849-9999-9856999999999238945999999998841899963
Q 005476 455 DLEPR-----MEHYGCMVDILGRAGLVEEAYQFIKNM-PIPP-NPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSG 527 (695)
Q Consensus 455 ~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (695)
.|+ ...+..++..+.+.|++++|...++++ ...| +...|..+..+|...|+++.|...+++++++.|.+..
T Consensus 287 --~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 287 --EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH
T ss_conf --873368999999999999998788999999999998848454899999999998703799999999999885935299
Q ss_pred CHHHHHHHHHH
Q ss_conf 09999999997
Q 005476 528 DYILLSDIYAS 538 (695)
Q Consensus 528 ~~~~l~~~~~~ 538 (695)
.+..+..+...
T Consensus 365 ~~~~l~~~~~~ 375 (450)
T 2y4t_A 365 IREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
Done!