Query 005477
Match_columns 694
No_of_seqs 182 out of 2148
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 18:06:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005477.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1985-1989//hhsearch_pdb/005477hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bw3_A Transposase; DNA recomb 1.0 1 1 515.7 36.6 490 129-686 13-531 (534)
2 2djr_A Zinc finger BED domain- 1.0 1 1 81.8 3.4 62 34-96 2-66 (76)
3 2ct5_A Zinc finger BED domain 1.0 1 1 81.2 2.2 57 35-96 3-63 (73)
4 2lv2_A Insulinoma-associated p 1.0 1 1 19.9 2.8 26 57-90 56-81 (85)
5 1zr9_A Zinc finger protein 593 1.0 1 1 19.5 0.5 29 54-90 47-75 (124)
6 2czr_A TBP-interacting protein 1.0 1 1 18.9 3.5 46 39-94 106-181 (226)
7 1x3c_A Zinc finger protein 292 1.0 1 1 17.7 2.8 46 40-93 10-57 (73)
8 2jsp_A Transcriptional regulat 1.0 1 1 17.1 1.5 26 56-92 20-45 (87)
9 3iuf_A Zinc finger protein UBI 1.0 1 1 16.7 2.5 31 54-92 4-34 (48)
10 2elu_A Zinc finger protein 406 1.0 1 1 16.7 1.9 27 56-90 8-34 (37)
No 1
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=1.00 E-value=1 Score=515.69 Aligned_cols=490 Identities=17% Similarity=0.250 Sum_probs=380.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC---CC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54457689999999996169998778989999999729---99--------60167020386899999999999999996
Q 005477 129 SFNQDRSTQDIAKMIIVHEYPPHIVEHPAFIDFVHTLQ---PQ--------FNVASFNTIQGDCVAIYLREKQRLLNFIS 197 (694)
Q Consensus 129 ~~~~~~~~~~l~~~i~~~~~P~~~ve~~~F~~l~~~l~---p~--------~~~ps~~~~~~~i~~~~~~~~~~i~~~l~ 197 (694)
.++++.+.+++++||+.+++||+++|+++|++|+..++ |. +.+|+++++++.+..+|...++.++++++
T Consensus 13 ~~~~~~~~~~l~~~i~~~~~Pf~~ve~~~F~~~l~~l~~~~p~~~~~~~~~~~~ps~~~~~~~i~~~~~~~~~~l~~~l~ 92 (534)
T 2bw3_A 13 ADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITLSRKVTSDAKEKKALIGREIK 92 (534)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGGGCHHHHHHHHHHHHHHHHHCSCBCHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66689999999999984698634638888999999998642330555454640899431899999999999999999998
Q ss_pred CC--CCCEEEEECCCCCC-CCCEEEEEEEEEEECCCCEEEEEEEEEEECC-CCCHHHHHHHHHHHHHHCCCCC-CEEEEE
Q ss_conf 16--78327732031003-8832789999988288542545888544079-9944589999999987327866-478996
Q 005477 198 GI--HGRVNLALDLWSSN-QSVGYAVLTGHFIDGDWNLHHRVLNVVMVPS-PDSDVAFNQALASCLSDWRLEN-KLLTLT 272 (694)
Q Consensus 198 ~~--~~~~sl~~D~wt~~-~~~~~l~v~~~~i~~~~~~~~~~L~~~~~~~-~~t~~~i~~~i~~vl~~~~i~~-ki~~i~ 272 (694)
.+ .+.++|++|+||+. ++..||+|++||++ +|.+++++|++..+.+ .|||++|++.|.+++.+||+++ ++++++
T Consensus 93 ~~~~~~~~sl~~D~wt~~~~~~~~l~i~v~~i~-~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~v 171 (534)
T 2bw3_A 93 SAVEKDGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFV 171 (534)
T ss_dssp HHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEE
T ss_pred HHHCCCCEEEEEECCCCCCCCCCEEEEEEEEEE-CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 630478648997326688788643479999831-7826788776764699998799999999999998199853431697
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 05898866799989953123798643672223401589987999988733---128999999876874249179999999
Q 005477 273 LDRSFSNETINGNLRGFLSVKNPFMLNCQLIKGNCYARVISRLAQDALGA---IWETVDKIRASVKYVKTSDTHEEKFLE 349 (694)
Q Consensus 273 ~D~a~~n~~~~~~l~~~l~~~~~~~~~~~~~~i~C~~H~lnl~~~~~l~~---i~~~l~~~~~~~~~~~~s~~~~~~l~~ 349 (694)
+||++||. ..+. ...+++|++|.|||+++++++. +..++.+++.++++|+.|+.+..
T Consensus 172 tDnasn~~-------~~~~---------~~~~i~C~~H~lnLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~~~~---- 231 (534)
T 2bw3_A 172 TDRGANVV-------KSLA---------NNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHR---- 231 (534)
T ss_dssp ECCCHHHH-------HHTT---------TSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGG----
T ss_pred CCCHHHHH-------HHHH---------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----
T ss_conf 88788899-------9981---------486405199999999999752205678899999999999853486674----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99852989997523578865334999899998668998677521987766899986699999999999999999833249
Q 005477 350 LKERLQVPSTKELFIDDQTKWNTTYHMLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEILCTYLKYFFDAANILTS 429 (694)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~tRW~S~~~~l~~~l~~~~~i~~~~~~~~~~~~~~l~~~~w~~l~~l~~iL~pf~~~~~~l~~ 429 (694)
+ + ..|..+++|||+|+|.||+++++++++|..++..... ...++..+|..++.+..+|+||+.++..+++
T Consensus 232 ----l--~--~~l~~~~~tRW~S~~~~L~~~l~~~~~i~~~~~~~~~--~~~~~~~dw~~~~~l~~iL~pf~~~t~~l~~ 301 (534)
T 2bw3_A 232 ----L--R--SSLKSECPTRWNSTYTMLRSILDNWESVIQILSEAGE--TQRIVHINKSIIQTMVNILDGFERIFKELQT 301 (534)
T ss_dssp ----G--C--CCCCCSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTC--GGGTTTCCHHHHHHHHHHHHTTHHHHHHHTC
T ss_pred ----C--C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ----6--5--5669999988170999999999989999999984464--3378654199999999999999999999856
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHEECCCCH-------HHHHHHHH
Q ss_conf 9966535379999999999998823989578975899999999976200-003222300067400-------46688752
Q 005477 430 PTYPTASVFYHEVSKIQAELTQAAMSEEPFTSYLTKPLKERFDEYWKDC-FLVLAIAVVIDPRFK-------MKLIEFSF 501 (694)
Q Consensus 430 ~~~~~~~~v~~~i~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~A~~LdPr~k-------~~~~~~~~ 501 (694)
++.|+++.++|.++.+...+.. .......+..+...+..+|++||.+. +++|.+|++|||||+ ..++++++
T Consensus 302 ~~~pt~~~v~~~~~~l~~~l~~-~~~~~~~~~~l~~~m~~~l~ky~~~~~~~~~~~A~~LdPr~~~l~p~~k~~~~~~~~ 380 (534)
T 2bw3_A 302 CSSPSLCFVVPSILKVKEICSP-DVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCL 380 (534)
T ss_dssp SSSCCGGGHHHHHHHHHHHTCC-CTTSCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHHTSGGGTTSCCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 8986299999999999998511-544207899999999999999998612425640357225100158888999999876
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20025423468999999999999999630037998654677654666412355431048887899876766532124799
Q 005477 502 SRIYGEDAGMWIKAVDDGLHELFHEYLVQMLALPDTFMDEGLEVIPKSEASREETLHAGNIEEGTPQEHSQDLSLISIGD 581 (694)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (694)
.+..+ ..+.+.+..|.... +.....+....+ .....+.+. ...++
T Consensus 381 ~~~~~-----------~~~~~~~~~~~~l~----~~~~~~~~~~~~------------~~~~~~~~~--------~~~~~ 425 (534)
T 2bw3_A 381 SKMED-----------LELINRMSSFNELS----ATQLNQSDSNSH------------NSIDLTSHS--------KDIST 425 (534)
T ss_dssp HHHHH-----------HHHHHHHHHTTCSC----SSSCCC------------------------------------CCCH
T ss_pred HHHCC-----------HHHHHHHHHHHHHH----HHHCCCCCCCCC------------CCCCCCCCC--------CCCCC
T ss_conf 66314-----------57789999998742----321167887655------------566644456--------67552
Q ss_pred CCCHHHHHHHCC--CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 972243321001--479983339999984149899887667899976027730289999977165665522121113488
Q 005477 582 GLSDFEVYISED--TSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDILSIPFSTVPTDSVFDTVS 659 (694)
Q Consensus 582 ~~~~~~~~~~~~--~~~~~~~~El~~y~~~~~~~~~~~~dpl~~W~~~~~~fP~L~~lA~~~LsiPass~~~Er~FS~~~ 659 (694)
....|..+.... .......+|+++|+.++.. .....||+.||+.++..||.|++||++||++|+||++|||+||.++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~el~~yl~~~~~-~~~~~~~l~wW~~~~~~~p~L~~~a~~~l~~p~ss~~~er~fs~~~ 504 (534)
T 2bw3_A 426 TSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVI-LSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAG 504 (534)
T ss_dssp HHHHCHHHHHHHHHSCCCCHHHHHHHHHTCCCC-CCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 377888886257888888718999999769988-6789984999774882588199999998468860443113324213
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 631243247898789999774210127
Q 005477 660 KKIDSYRSSLRPVTLEALICAKDWLQY 686 (694)
Q Consensus 660 ~~~~~~R~~L~~~~le~l~~l~~~~~~ 686 (694)
.+++++|++|.++++++|+|+++|+++
T Consensus 505 ~~~~~~r~~l~~~~~~~l~~~~~~~~~ 531 (534)
T 2bw3_A 505 NIITEKRNRIGQQTVDSLLFLNSFYKN 531 (534)
T ss_dssp HHHHCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 605741136879999999999999987
No 2
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=81.82 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCCCEEEEECCC---CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 766532222224625541698---214863666444443458655672477976742989864334
Q 005477 34 KRRRKKSIVWDYFTVETVDAG---CTRACCNQCKKSFAYITGSKLAGTSHLKRHITMGICPVSRQK 96 (694)
Q Consensus 34 ~~~~~~S~vW~~F~~~~~~~~---~~~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~h~~~~~~~ 96 (694)
+.++++|.||+||.....+++ ..+|+|++|++.++.. +....||++|.+||+++|..++.+.
T Consensus 2 ~~~~~~S~VW~~F~k~~~~~~~~~~~~A~Ck~C~k~ls~g-~~s~~GTS~L~rHL~~~H~~e~~~~ 66 (76)
T 2djr_A 2 SSGSSGSEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRG-PGVNVGTTALWKHLKSMHREELEKS 66 (76)
T ss_dssp CSSSCCGGGGGGEEECCCCSSSCSCSCEEESSSCCBCCCC-SSCCSSSCHHHHHHHHTTHHHHHHT
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCHHHHHHHHHHHCHHHHHHC
T ss_conf 8888517387554415345787888977778887702778-8788855999999999898999736
No 3
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Probab=1.00 E-value=1 Score=81.22 Aligned_cols=57 Identities=28% Similarity=0.490 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCEEEEECCCC----CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 665322222246255416982----14863666444443458655672477976742989864334
Q 005477 35 RRRKKSIVWDYFTVETVDAGC----TRACCNQCKKSFAYITGSKLAGTSHLKRHITMGICPVSRQK 96 (694)
Q Consensus 35 ~~~~~S~vW~~F~~~~~~~~~----~~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~h~~~~~~~ 96 (694)
.++.+|.||+||.++..++|. .++.|++|++.+++. ++|+||.+||+.+|..++.+.
T Consensus 3 ~~~~~S~VW~~F~k~~~~~g~il~~~~a~Ck~C~~~l~~~-----g~TSnL~rHL~~~H~~e~~~~ 63 (73)
T 2ct5_A 3 SGSSGSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYS-----GNTSNLSYHLEKNHPEEFCEF 63 (73)
T ss_dssp SSCSCCCTTSSSCCCCCSSSCGGGSSCCEETTTTEECCCC-----SSTHHHHHHHHHSCHHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCC-----CCHHHHHHHHHHHCHHHHHHH
T ss_conf 8786674877277344578753467877877887511688-----980869999998788999999
No 4
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=19.87 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=13.0
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 4863666444443458655672477976742989
Q 005477 57 RACCNQCKKSFAYITGSKLAGTSHLKRHITMGIC 90 (694)
Q Consensus 57 ~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~h~ 90 (694)
...|..|++.|. ..++|.+|++..|.
T Consensus 56 ~~~C~~C~k~F~--------~~~~L~~H~~~~H~ 81 (85)
T 2lv2_A 56 VFPCKYCPATFY--------SSPGLTRHINKCHP 81 (85)
T ss_dssp SEECTTSSCEES--------SHHHHHHHHHTTCT
T ss_pred CCCCCCCCCEEC--------CHHHHHHHCCCCCC
T ss_conf 548898899748--------77899985833181
No 5
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=1.00 E-value=1 Score=19.50 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 8214863666444443458655672477976742989
Q 005477 54 GCTRACCNQCKKSFAYITGSKLAGTSHLKRHITMGIC 90 (694)
Q Consensus 54 ~~~~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~h~ 90 (694)
|.....|..|++.|. ..++|..|++++..
T Consensus 47 GekpfyC~~C~K~F~--------~~~~L~~H~rsK~H 75 (124)
T 1zr9_A 47 GGGLHRCLACARYFI--------DSTNLKTHFRSKDH 75 (124)
T ss_dssp GGGCSEETTTTEECS--------SHHHHHHHTTCHHH
T ss_pred CCCCEECCCCCCHHC--------CHHHHHHHHHHHHH
T ss_conf 996637556766109--------89999999803053
No 6
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=1.00 E-value=1 Score=18.91 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCCCCCCEEEEECCC-------------------------C-----CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 2222224625541698-------------------------2-----148636664444434586556724779767429
Q 005477 39 KSIVWDYFTVETVDAG-------------------------C-----TRACCNQCKKSFAYITGSKLAGTSHLKRHITMG 88 (694)
Q Consensus 39 ~S~vW~~F~~~~~~~~-------------------------~-----~~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~ 88 (694)
.-.||.-|..+..+++ + +..+|..|++-+. --|+.+||+ +
T Consensus 106 DHIVWsGFkVVE~dg~L~QED~YEYLGgrlieHlK~~~~~GqDyvFWQFYKCe~CgKYvD---------Id~~~~Hlk-~ 175 (226)
T 2czr_A 106 DHIVWSGFKVVEDNGKLVQEDVYEYLGAALVNHIKNNALAGQDYIFWQFYKCEECGKYVD---------IENLEAHLR-E 175 (226)
T ss_dssp HTEEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHTTCCBTTTEEEEEEEECTTTCCEEE---------GGGHHHHHH-T
T ss_pred HHEEECCEEEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHCCCEEC---------HHHHHHHHH-H
T ss_conf 225750328991389341377898853799999870654576248999875123276413---------777999998-7
Q ss_pred CCCCCC
Q ss_conf 898643
Q 005477 89 ICPVSR 94 (694)
Q Consensus 89 h~~~~~ 94 (694)
|.....
T Consensus 176 Hg~~v~ 181 (226)
T 2czr_A 176 HGIKLH 181 (226)
T ss_dssp TTCCGG
T ss_pred CCCCHH
T ss_conf 296443
No 7
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=1.00 E-value=1 Score=17.70 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEECCCCCEEECCC--CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 22222462554169821486366--6444443458655672477976742989864
Q 005477 40 SIVWDYFTVETVDAGCTRACCNQ--CKKSFAYITGSKLAGTSHLKRHITMGICPVS 93 (694)
Q Consensus 40 S~vW~~F~~~~~~~~~~~~~C~~--C~~~~~~~~~~~~~~ts~l~~Hl~~~h~~~~ 93 (694)
-.|-+-+.....-.|.+-.+|.. |++.|. -.++|.+|++..|....
T Consensus 10 ~~~~~~~~~~~~~sGEKPYkC~~~~CgKaFs--------r~s~L~~H~rriHTgEK 57 (73)
T 1x3c_A 10 KPVSQSLEFPTRYSPYRPYRCVHQGCFAAFT--------IQQNLILHYQAVHKSDL 57 (73)
T ss_dssp CCCCCCCCCSSSSCSSCSCBCCSTTCCCBCS--------SHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCHHHC--------CHHHHHHHHHHHCCCCC
T ss_conf 2135675245455688794889988484676--------98899987230078998
No 8
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=1.00 E-value=1 Score=17.10 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=19.6
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 1486366644444345865567247797674298986
Q 005477 56 TRACCNQCKKSFAYITGSKLAGTSHLKRHITMGICPV 92 (694)
Q Consensus 56 ~~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~h~~~ 92 (694)
..++|..||+.+. .|.+||...|...
T Consensus 20 d~iiClecGK~fK-----------~LkRHL~~~hglt 45 (87)
T 2jsp_A 20 DHIVCLECGGSFK-----------SLKRHLTTHHSMT 45 (87)
T ss_dssp SCEECTBTCCEES-----------BHHHHHHHTTCSC
T ss_pred CCEEECCCCHHHH-----------HHHHHHHHCCCCC
T ss_conf 8457015263068-----------9999998804989
No 9
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=16.74 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 821486366644444345865567247797674298986
Q 005477 54 GCTRACCNQCKKSFAYITGSKLAGTSHLKRHITMGICPV 92 (694)
Q Consensus 54 ~~~~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~h~~~ 92 (694)
+.....|..|++.+. ..++|.+|....|...
T Consensus 4 ~~kp~~C~~C~k~F~--------~~~~L~~H~~~~H~~e 34 (48)
T 3iuf_A 4 RDKPYACDICGKRYK--------NRPGLSYHYAHSHLAE 34 (48)
T ss_dssp TTSCEECTTTCCEES--------SHHHHHHHHHHSSCC-
T ss_pred CCCCEECCCCCCCCC--------CHHHHHHHHHHHCCCC
T ss_conf 983977898684258--------9899999766133798
No 10
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=1.00 E-value=1 Score=16.67 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=21.1
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 14863666444443458655672477976742989
Q 005477 56 TRACCNQCKKSFAYITGSKLAGTSHLKRHITMGIC 90 (694)
Q Consensus 56 ~~~~C~~C~~~~~~~~~~~~~~ts~l~~Hl~~~h~ 90 (694)
.+--|..|++.++ .-.||.+|++-.|-
T Consensus 8 ikqhcrfckkkys--------dvknlikhire~hd 34 (37)
T 2elu_A 8 IKQHCRFCKKKYS--------DVKNLIKHIRDAHD 34 (37)
T ss_dssp CCCEETTTTEECS--------SHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHCC
T ss_conf 9999999998878--------89999999997247
Done!