Query 005478
Match_columns 694
No_of_seqs 459 out of 3689
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 00:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 1.7E-90 3.7E-95 731.0 38.3 423 263-690 4-427 (428)
2 KOG0458 Elongation factor 1 al 100.0 7.9E-84 1.7E-88 700.7 38.0 428 261-690 172-602 (603)
3 PLN00043 elongation factor 1-a 100.0 6.3E-80 1.4E-84 685.9 45.9 424 263-691 4-431 (447)
4 PTZ00141 elongation factor 1- 100.0 1.1E-78 2.5E-83 676.1 47.1 425 263-692 4-432 (446)
5 PRK12317 elongation factor 1-a 100.0 6.8E-76 1.5E-80 653.8 45.5 419 263-693 3-424 (425)
6 TIGR00483 EF-1_alpha translati 100.0 3.2E-75 7E-80 648.4 47.1 421 263-692 4-425 (426)
7 KOG0459 Polypeptide release fa 100.0 3.8E-75 8.2E-80 606.1 30.1 424 262-691 75-501 (501)
8 COG2895 CysN GTPases - Sulfate 100.0 1.7E-72 3.7E-77 579.2 34.5 410 263-690 3-416 (431)
9 PRK05124 cysN sulfate adenylyl 100.0 1.5E-70 3.2E-75 615.4 44.4 421 249-690 13-438 (474)
10 TIGR02034 CysN sulfate adenyly 100.0 2.3E-70 4.9E-75 604.8 42.2 401 267-686 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 7.6E-67 1.6E-71 606.7 43.7 409 264-691 22-435 (632)
12 PLN03126 Elongation factor Tu; 100.0 1E-63 2.3E-68 558.1 41.7 390 262-691 77-478 (478)
13 PRK12735 elongation factor Tu; 100.0 5.3E-63 1.1E-67 544.7 42.2 381 260-691 6-396 (396)
14 CHL00071 tufA elongation facto 100.0 6.1E-63 1.3E-67 546.4 41.9 391 261-691 7-409 (409)
15 PRK00049 elongation factor Tu; 100.0 1.8E-62 3.8E-67 540.3 43.4 380 261-691 7-396 (396)
16 PRK12736 elongation factor Tu; 100.0 3.4E-62 7.4E-67 538.0 42.0 378 261-691 7-394 (394)
17 TIGR00485 EF-Tu translation el 100.0 8.4E-62 1.8E-66 535.3 41.6 378 261-691 7-394 (394)
18 PLN03127 Elongation factor Tu; 100.0 1.8E-60 3.9E-65 529.5 41.3 377 261-691 56-447 (447)
19 COG0050 TufB GTPases - transla 100.0 2.6E-58 5.6E-63 463.5 31.1 379 260-691 6-394 (394)
20 KOG0460 Mitochondrial translat 100.0 3.5E-58 7.7E-63 470.1 24.8 380 262-691 50-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 1.2E-53 2.7E-58 474.0 36.7 343 264-688 32-451 (460)
22 PRK10512 selenocysteinyl-tRNA- 100.0 4.2E-51 9E-56 469.7 38.0 338 267-692 1-343 (614)
23 PRK04000 translation initiatio 100.0 4.8E-50 1E-54 443.2 37.5 342 263-687 6-411 (411)
24 TIGR03680 eif2g_arch translati 100.0 6.5E-50 1.4E-54 442.1 37.0 340 264-686 2-405 (406)
25 COG5258 GTPBP1 GTPase [General 100.0 9.8E-51 2.1E-55 420.7 24.2 405 218-689 70-526 (527)
26 TIGR00475 selB selenocysteine- 100.0 1.5E-47 3.2E-52 439.1 37.5 336 267-689 1-338 (581)
27 COG3276 SelB Selenocysteine-sp 100.0 6.4E-46 1.4E-50 395.4 28.6 326 268-660 2-330 (447)
28 KOG0463 GTP-binding protein GP 100.0 8.9E-47 1.9E-51 389.2 18.8 379 249-693 115-550 (641)
29 KOG1143 Predicted translation 100.0 5.9E-45 1.3E-49 375.7 23.4 370 260-694 161-587 (591)
30 COG5257 GCD11 Translation init 100.0 3.5E-40 7.7E-45 336.2 29.1 341 264-688 8-413 (415)
31 KOG0052 Translation elongation 100.0 1.8E-40 3.9E-45 350.1 13.2 369 263-693 4-375 (391)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 1.4E-36 3.1E-41 347.9 27.5 278 267-581 2-290 (594)
33 KOG0461 Selenocysteine-specifi 100.0 6E-35 1.3E-39 299.5 20.7 347 265-664 6-380 (522)
34 cd01883 EF1_alpha Eukaryotic e 100.0 7.9E-35 1.7E-39 296.3 20.3 216 268-487 1-218 (219)
35 PRK10218 GTP-binding protein; 100.0 4.6E-34 1E-38 326.9 28.5 278 265-580 4-293 (607)
36 TIGR01393 lepA GTP-binding pro 100.0 6E-34 1.3E-38 327.1 28.0 266 266-581 3-279 (595)
37 PRK05433 GTP-binding protein L 100.0 5.2E-34 1.1E-38 327.9 26.8 267 265-581 6-283 (600)
38 COG1217 TypA Predicted membran 100.0 1.5E-33 3.3E-38 299.3 26.0 282 264-582 3-295 (603)
39 KOG0462 Elongation factor-type 100.0 9.6E-34 2.1E-38 306.2 22.2 265 265-579 59-332 (650)
40 cd04166 CysN_ATPS CysN_ATPS su 100.0 1.2E-33 2.6E-38 285.3 20.4 207 268-487 1-207 (208)
41 COG0481 LepA Membrane GTPase L 100.0 1.6E-33 3.5E-38 299.9 21.7 267 264-580 7-284 (603)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.3E-31 2.7E-36 267.8 19.2 193 265-487 1-194 (195)
43 PRK05306 infB translation init 100.0 7.7E-30 1.7E-34 298.1 27.7 247 263-577 287-542 (787)
44 TIGR00487 IF-2 translation ini 100.0 1.2E-29 2.6E-34 290.2 28.2 246 264-576 85-339 (587)
45 PRK07560 elongation factor EF- 100.0 2E-29 4.3E-34 297.5 23.2 286 265-579 19-375 (731)
46 PRK00007 elongation factor G; 100.0 1.7E-28 3.6E-33 288.1 25.8 270 265-579 9-394 (693)
47 PRK12739 elongation factor G; 100.0 2.3E-28 4.9E-33 287.1 25.5 270 265-579 7-391 (691)
48 CHL00189 infB translation init 100.0 6.1E-28 1.3E-32 279.8 25.5 247 263-576 241-499 (742)
49 PRK00741 prfC peptide chain re 100.0 1.4E-27 3E-32 270.7 26.4 278 264-579 8-380 (526)
50 TIGR00484 EF-G translation elo 100.0 9.8E-28 2.1E-32 281.9 25.9 281 265-579 9-392 (689)
51 TIGR00503 prfC peptide chain r 100.0 1.5E-27 3.2E-32 270.5 25.9 278 264-579 9-381 (527)
52 PF00009 GTP_EFTU: Elongation 100.0 2.2E-28 4.7E-33 242.8 15.8 181 264-484 1-185 (188)
53 KOG0466 Translation initiation 100.0 5.7E-29 1.2E-33 252.1 9.4 345 264-688 36-458 (466)
54 PRK04004 translation initiatio 100.0 3E-27 6.4E-32 271.2 24.6 246 263-564 3-316 (586)
55 KOG1145 Mitochondrial translat 100.0 1.5E-27 3.3E-32 258.0 19.8 237 263-560 150-392 (683)
56 COG0480 FusA Translation elong 100.0 1.3E-27 2.7E-32 275.6 20.4 275 263-579 7-392 (697)
57 TIGR00491 aIF-2 translation in 100.0 9.2E-27 2E-31 266.2 24.5 253 265-575 3-323 (590)
58 COG0532 InfB Translation initi 99.9 1.1E-26 2.5E-31 254.3 23.4 235 265-560 4-246 (509)
59 PRK13351 elongation factor G; 99.9 1.3E-26 2.9E-31 272.6 25.1 273 265-579 7-390 (687)
60 PRK12740 elongation factor G; 99.9 1.4E-26 3E-31 271.9 24.0 263 272-579 1-373 (668)
61 TIGR00490 aEF-2 translation el 99.9 7.8E-27 1.7E-31 274.9 19.5 286 265-579 18-374 (720)
62 COG4108 PrfC Peptide chain rel 99.9 8.1E-27 1.7E-31 247.3 15.1 276 265-578 11-381 (528)
63 PLN00116 translation elongatio 99.9 4.1E-25 8.8E-30 264.0 23.5 289 264-579 17-471 (843)
64 PTZ00416 elongation factor 2; 99.9 2.3E-24 5E-29 257.1 22.0 150 264-437 17-184 (836)
65 KOG0465 Mitochondrial elongati 99.9 1.6E-24 3.4E-29 237.1 13.6 271 265-578 38-420 (721)
66 cd01885 EF2 EF2 (for archaea a 99.9 4.6E-24 1E-28 217.2 15.0 190 267-487 1-222 (222)
67 cd01888 eIF2_gamma eIF2-gamma 99.9 2.4E-23 5.3E-28 209.4 15.4 168 267-488 1-202 (203)
68 cd04165 GTPBP1_like GTPBP1-lik 99.9 3.5E-23 7.5E-28 211.3 14.9 177 268-487 1-224 (224)
69 PRK14845 translation initiatio 99.9 1.7E-22 3.6E-27 241.1 22.9 223 327-576 491-781 (1049)
70 cd01889 SelB_euk SelB subfamil 99.9 2.1E-22 4.6E-27 200.4 16.0 171 267-487 1-188 (192)
71 cd01891 TypA_BipA TypA (tyrosi 99.9 6E-22 1.3E-26 197.4 17.2 170 266-462 2-173 (194)
72 cd04171 SelB SelB subfamily. 99.9 2.7E-21 5.7E-26 185.4 16.9 154 268-461 2-156 (164)
73 cd01886 EF-G Elongation factor 99.9 1.2E-21 2.6E-26 205.4 15.4 160 268-456 1-160 (270)
74 cd03704 eRF3c_III This family 99.9 1.2E-21 2.5E-26 177.5 12.5 106 584-689 2-108 (108)
75 cd01890 LepA LepA subfamily. 99.9 3.4E-21 7.3E-26 188.4 16.3 162 267-461 1-167 (179)
76 KOG0469 Elongation factor 2 [T 99.9 1.5E-21 3.3E-26 208.6 13.5 304 264-593 17-488 (842)
77 cd04167 Snu114p Snu114p subfam 99.9 4.9E-21 1.1E-25 194.0 16.3 170 268-459 2-191 (213)
78 cd04093 HBS1_C HBS1_C: this fa 99.9 5.5E-21 1.2E-25 172.7 14.4 106 584-689 2-107 (107)
79 cd04168 TetM_like Tet(M)-like 99.9 6.5E-21 1.4E-25 196.3 16.2 143 268-432 1-144 (237)
80 cd00881 GTP_translation_factor 99.8 6.1E-20 1.3E-24 180.0 16.8 168 268-461 1-177 (189)
81 cd03705 EF1_alpha_III Domain I 99.8 1.9E-20 4.2E-25 168.3 11.7 103 584-686 2-104 (104)
82 KOG1144 Translation initiation 99.8 1.4E-20 3E-25 208.9 12.4 240 261-560 470-794 (1064)
83 PF02421 FeoB_N: Ferrous iron 99.8 7.7E-20 1.7E-24 175.4 12.0 143 267-461 1-151 (156)
84 cd04169 RF3 RF3 subfamily. Pe 99.8 2.7E-19 5.9E-24 187.3 17.0 149 267-436 3-151 (267)
85 COG1160 Predicted GTPases [Gen 99.8 3.7E-19 8E-24 192.7 14.8 155 264-461 176-341 (444)
86 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1E-18 2.2E-23 168.5 16.3 151 268-461 2-156 (168)
87 COG1159 Era GTPase [General fu 99.8 3.7E-19 8.1E-24 183.4 13.0 181 264-506 4-199 (298)
88 KOG0464 Elongation factor G [T 99.8 5.3E-20 1.1E-24 193.1 6.2 272 265-578 36-418 (753)
89 KOG0467 Translation elongation 99.8 4.7E-18 1E-22 190.4 19.3 173 264-460 7-206 (887)
90 PF03143 GTP_EFTU_D3: Elongati 99.8 2E-18 4.4E-23 153.8 13.2 99 581-690 1-99 (99)
91 cd04095 CysN_NoDQ_III TCysN_No 99.8 2.4E-18 5.2E-23 154.5 11.9 100 584-686 2-103 (103)
92 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.4E-18 9.4E-23 164.3 13.3 155 268-461 1-159 (167)
93 cd01895 EngA2 EngA2 subfamily. 99.8 1.5E-17 3.3E-22 160.0 15.5 153 266-461 2-165 (174)
94 TIGR03594 GTPase_EngA ribosome 99.8 8.9E-18 1.9E-22 187.6 15.9 153 265-461 171-334 (429)
95 COG1160 Predicted GTPases [Gen 99.7 7.9E-18 1.7E-22 182.4 14.1 151 267-484 4-163 (444)
96 PRK00093 GTP-binding protein D 99.7 1.7E-17 3.8E-22 185.7 16.9 153 265-462 172-335 (435)
97 cd04170 EF-G_bact Elongation f 99.7 9.9E-18 2.1E-22 175.9 14.0 144 268-436 1-144 (268)
98 cd01513 Translation_factor_III 99.7 1.8E-17 3.9E-22 148.1 12.4 101 584-686 2-102 (102)
99 TIGR00436 era GTP-binding prot 99.7 3.3E-17 7.1E-22 172.2 15.8 145 268-461 2-154 (270)
100 PRK15494 era GTPase Era; Provi 99.7 1.6E-17 3.5E-22 179.9 13.4 178 265-506 51-243 (339)
101 TIGR03598 GTPase_YsxC ribosome 99.7 2.4E-16 5.2E-21 155.1 16.2 150 264-459 16-178 (179)
102 cd03693 EF1_alpha_II EF1_alpha 99.7 5E-17 1.1E-21 142.7 10.0 88 492-580 2-90 (91)
103 cd01894 EngA1 EngA1 subfamily. 99.7 1E-16 2.3E-21 152.1 12.3 140 270-461 1-148 (157)
104 cd04154 Arl2 Arl2 subfamily. 99.7 1.3E-16 2.9E-21 155.6 13.2 150 264-461 12-165 (173)
105 PRK03003 GTP-binding protein D 99.7 2.1E-16 4.6E-21 178.6 15.6 152 265-461 210-372 (472)
106 cd01864 Rab19 Rab19 subfamily. 99.7 4.6E-16 1E-20 150.2 15.3 149 266-461 3-156 (165)
107 cd01898 Obg Obg subfamily. Th 99.7 3.3E-16 7.2E-21 151.4 14.1 146 268-461 2-161 (170)
108 PRK00089 era GTPase Era; Revie 99.7 4.9E-16 1.1E-20 165.0 16.4 150 265-461 4-161 (292)
109 KOG0468 U5 snRNP-specific prot 99.7 1.9E-15 4.1E-20 166.9 21.1 132 264-418 126-262 (971)
110 cd04157 Arl6 Arl6 subfamily. 99.7 5.7E-16 1.2E-20 148.4 14.1 148 268-461 1-154 (162)
111 cd01879 FeoB Ferrous iron tran 99.7 2.4E-16 5.2E-21 150.2 11.2 139 271-461 1-147 (158)
112 TIGR03594 GTPase_EngA ribosome 99.7 4.4E-16 9.6E-21 174.0 14.8 142 268-461 1-150 (429)
113 cd04149 Arf6 Arf6 subfamily. 99.7 6.5E-16 1.4E-20 150.6 13.8 150 265-461 8-160 (168)
114 cd04145 M_R_Ras_like M-Ras/R-R 99.7 9.1E-16 2E-20 147.3 14.2 148 266-461 2-154 (164)
115 cd04124 RabL2 RabL2 subfamily. 99.7 1.2E-15 2.6E-20 147.2 15.1 146 267-461 1-148 (161)
116 cd04151 Arl1 Arl1 subfamily. 99.7 6E-16 1.3E-20 148.5 12.6 147 268-461 1-150 (158)
117 cd04164 trmE TrmE (MnmE, ThdF, 99.7 9.3E-16 2E-20 145.4 13.7 137 267-461 2-147 (157)
118 PRK03003 GTP-binding protein D 99.7 9.2E-16 2E-20 173.4 16.1 144 266-461 38-189 (472)
119 cd01861 Rab6 Rab6 subfamily. 99.7 2E-15 4.3E-20 144.6 15.9 146 268-461 2-152 (161)
120 TIGR00231 small_GTP small GTP- 99.7 7.3E-16 1.6E-20 144.7 12.5 150 267-461 2-154 (161)
121 cd01897 NOG NOG1 is a nucleola 99.7 1.6E-15 3.4E-20 146.6 15.1 147 267-461 1-158 (168)
122 cd03698 eRF3_II_like eRF3_II_l 99.7 4.6E-16 9.9E-21 134.2 9.5 83 494-577 1-83 (83)
123 cd01860 Rab5_related Rab5-rela 99.7 2.4E-15 5.2E-20 144.3 15.4 149 267-461 2-153 (163)
124 cd04106 Rab23_lke Rab23-like s 99.6 3.4E-15 7.3E-20 143.2 16.1 147 267-461 1-153 (162)
125 smart00175 RAB Rab subfamily o 99.6 3.8E-15 8.2E-20 142.8 16.4 147 267-461 1-152 (164)
126 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.7E-15 3.7E-20 146.2 13.9 147 267-461 1-151 (159)
127 cd00154 Rab Rab family. Rab G 99.6 3.2E-15 6.9E-20 141.2 15.2 149 267-461 1-152 (159)
128 cd04113 Rab4 Rab4 subfamily. 99.6 1.8E-15 4E-20 145.2 13.7 147 267-461 1-152 (161)
129 COG0218 Predicted GTPase [Gene 99.6 2.3E-15 4.9E-20 147.9 14.3 150 266-461 24-187 (200)
130 PRK09518 bifunctional cytidyla 99.6 1.6E-15 3.5E-20 179.3 15.9 152 265-461 449-611 (712)
131 PRK04213 GTP-binding protein; 99.6 3.1E-15 6.8E-20 149.5 15.7 157 265-461 8-182 (201)
132 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1.9E-15 4.1E-20 148.0 13.8 149 266-461 15-166 (174)
133 cd01866 Rab2 Rab2 subfamily. 99.6 4.3E-15 9.3E-20 144.3 15.8 150 266-461 4-156 (168)
134 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.7E-15 3.7E-20 144.5 12.8 148 267-461 2-152 (162)
135 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.2E-15 2.6E-20 152.9 12.3 148 267-461 1-158 (201)
136 cd04163 Era Era subfamily. Er 99.6 5.7E-15 1.2E-19 140.5 16.3 150 265-461 2-159 (168)
137 cd01862 Rab7 Rab7 subfamily. 99.6 6.3E-15 1.4E-19 142.6 16.5 149 267-461 1-157 (172)
138 cd04119 RJL RJL (RabJ-Like) su 99.6 2.9E-15 6.3E-20 143.8 14.0 148 267-461 1-157 (168)
139 PRK09554 feoB ferrous iron tra 99.6 2E-15 4.4E-20 178.2 15.6 145 265-461 2-158 (772)
140 PLN00223 ADP-ribosylation fact 99.6 4.1E-15 8.9E-20 146.9 15.4 149 265-461 16-168 (181)
141 smart00173 RAS Ras subfamily o 99.6 2.2E-15 4.8E-20 144.9 13.2 149 267-461 1-152 (164)
142 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 4.6E-15 1E-19 143.3 15.4 148 266-461 2-154 (166)
143 PRK12299 obgE GTPase CgtA; Rev 99.6 2.8E-15 6.1E-20 161.7 15.3 150 264-461 156-318 (335)
144 cd01865 Rab3 Rab3 subfamily. 99.6 5.5E-15 1.2E-19 143.0 15.7 149 267-461 2-153 (165)
145 cd04089 eRF3_II eRF3_II: domai 99.6 1.1E-15 2.4E-20 131.5 9.5 82 494-577 1-82 (82)
146 cd01867 Rab8_Rab10_Rab13_like 99.6 6.2E-15 1.4E-19 142.9 15.9 150 266-461 3-155 (167)
147 TIGR02729 Obg_CgtA Obg family 99.6 2.7E-15 5.8E-20 161.7 14.5 152 264-461 155-319 (329)
148 COG0486 ThdF Predicted GTPase 99.6 1.7E-15 3.7E-20 164.8 13.0 144 264-461 215-366 (454)
149 cd04116 Rab9 Rab9 subfamily. 99.6 1.7E-15 3.8E-20 146.8 11.7 155 265-461 4-161 (170)
150 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 4.2E-15 9.1E-20 146.9 14.6 157 266-461 3-160 (183)
151 PRK00093 GTP-binding protein D 99.6 2.6E-15 5.5E-20 168.3 14.7 143 267-461 2-152 (435)
152 cd04112 Rab26 Rab26 subfamily. 99.6 4.9E-15 1.1E-19 147.3 15.0 150 267-461 1-153 (191)
153 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.5E-15 5.4E-20 143.8 12.2 146 268-461 1-150 (158)
154 cd01868 Rab11_like Rab11-like. 99.6 9.1E-15 2E-19 140.9 16.0 148 266-461 3-155 (165)
155 cd04156 ARLTS1 ARLTS1 subfamil 99.6 4.1E-15 8.9E-20 142.4 13.3 149 268-461 1-152 (160)
156 PRK12296 obgE GTPase CgtA; Rev 99.6 3.8E-15 8.3E-20 166.8 14.8 156 264-461 157-330 (500)
157 cd04175 Rap1 Rap1 subgroup. T 99.6 4.4E-15 9.6E-20 143.1 13.0 147 267-461 2-153 (164)
158 cd04127 Rab27A Rab27a subfamil 99.6 1.1E-14 2.5E-19 142.4 16.1 148 266-461 4-167 (180)
159 cd03694 GTPBP_II Domain II of 99.6 1.8E-15 4E-20 131.6 9.2 82 495-577 1-87 (87)
160 cd00879 Sar1 Sar1 subfamily. 99.6 4.1E-15 8.8E-20 147.1 12.9 153 265-461 18-181 (190)
161 TIGR02528 EutP ethanolamine ut 99.6 1.7E-15 3.7E-20 142.6 9.7 130 268-461 2-135 (142)
162 cd04120 Rab12 Rab12 subfamily. 99.6 1.2E-14 2.7E-19 146.2 16.5 149 267-462 1-154 (202)
163 cd04136 Rap_like Rap-like subf 99.6 4.7E-15 1E-19 142.2 12.9 148 267-461 2-153 (163)
164 cd04118 Rab24 Rab24 subfamily. 99.6 6.7E-15 1.5E-19 146.1 14.4 154 267-461 1-156 (193)
165 smart00177 ARF ARF-like small 99.6 6.8E-15 1.5E-19 144.3 14.3 149 265-461 12-164 (175)
166 PRK15467 ethanolamine utilizat 99.6 2.5E-15 5.4E-20 145.3 10.9 131 268-461 3-137 (158)
167 PRK11058 GTPase HflX; Provisio 99.6 5.7E-16 1.2E-20 172.1 7.3 144 266-461 197-352 (426)
168 cd04155 Arl3 Arl3 subfamily. 99.6 6.1E-15 1.3E-19 143.3 13.7 153 265-461 13-165 (173)
169 cd04159 Arl10_like Arl10-like 99.6 8.1E-15 1.8E-19 138.6 14.2 146 269-461 2-151 (159)
170 cd04140 ARHI_like ARHI subfami 99.6 1E-14 2.2E-19 141.1 15.2 148 267-461 2-155 (165)
171 smart00178 SAR Sar1p-like memb 99.6 6E-15 1.3E-19 145.9 13.8 153 265-461 16-175 (184)
172 cd04122 Rab14 Rab14 subfamily. 99.6 7.2E-15 1.6E-19 142.2 14.1 149 267-461 3-154 (166)
173 PRK09518 bifunctional cytidyla 99.6 7.6E-15 1.6E-19 173.6 17.1 145 265-461 274-426 (712)
174 cd04114 Rab30 Rab30 subfamily. 99.6 9.5E-15 2.1E-19 141.2 14.8 149 265-461 6-159 (169)
175 cd04158 ARD1 ARD1 subfamily. 99.6 5.1E-15 1.1E-19 144.1 13.0 148 268-461 1-151 (169)
176 PRK12298 obgE GTPase CgtA; Rev 99.6 3.9E-15 8.5E-20 163.6 13.6 153 265-461 158-323 (390)
177 cd01878 HflX HflX subfamily. 99.6 8.4E-15 1.8E-19 146.9 14.8 145 264-461 39-195 (204)
178 PLN03118 Rab family protein; P 99.6 9.9E-15 2.1E-19 147.5 15.4 151 264-461 12-167 (211)
179 TIGR03156 GTP_HflX GTP-binding 99.6 7.4E-15 1.6E-19 159.6 15.3 143 265-461 188-342 (351)
180 cd01863 Rab18 Rab18 subfamily. 99.6 5.6E-15 1.2E-19 141.7 12.5 148 267-461 1-152 (161)
181 PRK00454 engB GTP-binding prot 99.6 1.4E-14 3E-19 143.8 15.2 149 265-461 23-184 (196)
182 PRK05291 trmE tRNA modificatio 99.6 5.8E-15 1.3E-19 165.6 13.7 139 265-461 214-360 (449)
183 cd04142 RRP22 RRP22 subfamily. 99.6 1.2E-14 2.5E-19 145.9 14.4 148 267-461 1-164 (198)
184 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.2E-14 4.7E-19 138.0 15.4 151 267-461 1-154 (164)
185 PTZ00369 Ras-like protein; Pro 99.6 1.1E-14 2.4E-19 144.5 13.6 151 264-461 3-157 (189)
186 cd03697 EFTU_II EFTU_II: Elong 99.6 3.8E-15 8.3E-20 129.6 8.8 84 495-579 1-87 (87)
187 cd04147 Ras_dva Ras-dva subfam 99.6 9.5E-15 2.1E-19 146.2 12.8 146 268-461 1-153 (198)
188 COG2262 HflX GTPases [General 99.6 1.8E-15 3.9E-20 161.9 8.0 180 227-461 156-346 (411)
189 cd00157 Rho Rho (Ras homology) 99.6 1.4E-14 3E-19 140.1 13.5 153 267-461 1-163 (171)
190 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.1E-14 4.5E-19 140.3 14.8 149 268-461 2-155 (170)
191 cd04139 RalA_RalB RalA/RalB su 99.6 1.3E-14 2.8E-19 138.9 13.1 147 267-461 1-152 (164)
192 PTZ00133 ADP-ribosylation fact 99.6 1.7E-14 3.6E-19 142.6 14.1 150 265-461 16-168 (182)
193 cd04109 Rab28 Rab28 subfamily. 99.6 3.1E-14 6.8E-19 144.4 16.4 148 267-461 1-156 (215)
194 cd04110 Rab35 Rab35 subfamily. 99.6 3.8E-14 8.2E-19 142.0 16.7 150 265-461 5-157 (199)
195 cd04115 Rab33B_Rab33A Rab33B/R 99.6 4.1E-14 8.8E-19 137.7 16.2 148 266-461 2-159 (170)
196 PRK12297 obgE GTPase CgtA; Rev 99.6 2.1E-14 4.6E-19 158.9 15.8 149 264-461 156-317 (424)
197 KOG0092 GTPase Rab5/YPT51 and 99.6 1.9E-14 4.1E-19 139.2 13.4 153 264-461 3-157 (200)
198 cd01893 Miro1 Miro1 subfamily. 99.6 3.2E-14 6.9E-19 137.9 15.1 151 267-461 1-154 (166)
199 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.2E-14 4.9E-19 139.5 13.9 147 268-461 1-159 (167)
200 cd00877 Ran Ran (Ras-related n 99.6 2.6E-14 5.6E-19 138.9 14.2 147 267-461 1-149 (166)
201 cd04176 Rap2 Rap2 subgroup. T 99.6 1.5E-14 3.2E-19 139.2 12.4 148 267-461 2-153 (163)
202 cd04132 Rho4_like Rho4-like su 99.6 2.9E-14 6.2E-19 140.7 14.4 153 267-461 1-157 (187)
203 cd04135 Tc10 TC10 subfamily. 99.6 1.5E-14 3.2E-19 140.7 11.8 151 267-461 1-164 (174)
204 PLN03110 Rab GTPase; Provision 99.6 5.6E-14 1.2E-18 142.8 16.4 149 265-461 11-164 (216)
205 cd04121 Rab40 Rab40 subfamily. 99.6 6.6E-14 1.4E-18 139.5 16.5 149 265-461 5-157 (189)
206 cd04123 Rab21 Rab21 subfamily. 99.6 3.5E-14 7.5E-19 135.5 13.9 147 267-461 1-152 (162)
207 cd04177 RSR1 RSR1 subgroup. R 99.6 3.1E-14 6.7E-19 138.2 13.6 153 267-461 2-154 (168)
208 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 3.1E-14 6.7E-19 138.2 13.4 145 269-461 2-156 (164)
209 cd04143 Rhes_like Rhes_like su 99.6 6.5E-14 1.4E-18 145.3 16.3 151 267-461 1-161 (247)
210 cd04144 Ras2 Ras2 subfamily. 99.6 3.7E-14 8.1E-19 140.9 13.9 147 268-461 1-153 (190)
211 COG0370 FeoB Fe2+ transport sy 99.6 2.8E-14 6.2E-19 161.3 14.4 144 266-461 3-154 (653)
212 cd01881 Obg_like The Obg-like 99.6 3.4E-14 7.3E-19 137.8 12.7 149 271-461 1-167 (176)
213 TIGR00450 mnmE_trmE_thdF tRNA 99.6 4.6E-14 1E-18 157.7 15.4 141 265-461 202-350 (442)
214 cd03696 selB_II selB_II: this 99.5 1.7E-14 3.7E-19 124.3 9.3 82 495-577 1-83 (83)
215 cd01874 Cdc42 Cdc42 subfamily. 99.5 4.1E-14 8.9E-19 138.9 13.2 152 267-461 2-165 (175)
216 cd00876 Ras Ras family. The R 99.5 6.3E-14 1.4E-18 133.4 13.7 145 268-461 1-151 (160)
217 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 6.3E-14 1.4E-18 137.1 13.7 149 266-461 2-154 (172)
218 cd04128 Spg1 Spg1p. Spg1p (se 99.5 1.3E-13 2.9E-18 136.4 16.0 153 267-461 1-156 (182)
219 cd04126 Rab20 Rab20 subfamily. 99.5 5.7E-14 1.2E-18 143.2 13.6 112 267-419 1-114 (220)
220 cd04137 RheB Rheb (Ras Homolog 99.5 5.9E-14 1.3E-18 137.5 12.8 147 267-461 2-153 (180)
221 cd04125 RabA_like RabA-like su 99.5 1.3E-13 2.9E-18 136.4 15.4 149 267-461 1-152 (188)
222 smart00174 RHO Rho (Ras homolo 99.5 7.1E-14 1.5E-18 135.9 13.2 150 269-461 1-162 (174)
223 cd00880 Era_like Era (E. coli 99.5 7.4E-14 1.6E-18 131.1 12.9 146 271-461 1-154 (163)
224 cd01892 Miro2 Miro2 subfamily. 99.5 6E-14 1.3E-18 136.8 12.6 154 264-461 2-156 (169)
225 cd04111 Rab39 Rab39 subfamily. 99.5 9.1E-14 2E-18 140.8 14.1 149 266-461 2-156 (211)
226 cd03695 CysN_NodQ_II CysN_NodQ 99.5 3.9E-14 8.5E-19 121.5 9.7 80 495-577 1-81 (81)
227 PLN03108 Rab family protein; P 99.5 1.6E-13 3.5E-18 138.8 15.7 150 266-461 6-158 (210)
228 cd01871 Rac1_like Rac1-like su 99.5 1.1E-13 2.4E-18 135.8 13.9 153 266-461 1-165 (174)
229 cd01875 RhoG RhoG subfamily. 99.5 1.6E-13 3.4E-18 136.7 14.8 152 265-461 2-167 (191)
230 cd04130 Wrch_1 Wrch-1 subfamil 99.5 8.3E-14 1.8E-18 135.9 12.4 152 267-461 1-164 (173)
231 cd04117 Rab15 Rab15 subfamily. 99.5 3.1E-13 6.7E-18 130.5 16.1 147 267-461 1-152 (161)
232 PLN03071 GTP-binding nuclear p 99.5 2.3E-13 5E-18 138.7 15.6 150 264-461 11-162 (219)
233 COG2229 Predicted GTPase [Gene 99.5 2.2E-13 4.9E-18 131.2 14.4 159 263-461 7-168 (187)
234 PF00025 Arf: ADP-ribosylation 99.5 2E-13 4.2E-18 134.3 14.2 151 264-461 12-166 (175)
235 cd01876 YihA_EngB The YihA (En 99.5 2.6E-13 5.6E-18 129.5 14.5 147 269-461 2-161 (170)
236 cd01882 BMS1 Bms1. Bms1 is an 99.5 4.9E-13 1.1E-17 136.8 17.3 166 263-486 36-201 (225)
237 cd04146 RERG_RasL11_like RERG/ 99.5 1.4E-13 3E-18 132.9 12.2 147 268-461 1-154 (165)
238 cd04134 Rho3 Rho3 subfamily. 99.5 2.1E-13 4.5E-18 135.5 12.7 153 267-461 1-164 (189)
239 KOG1423 Ras-like GTPase ERA [C 99.5 7.4E-13 1.6E-17 136.2 16.9 120 261-419 67-199 (379)
240 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 4.5E-13 9.7E-18 129.7 14.5 153 264-461 20-175 (221)
241 cd01870 RhoA_like RhoA-like su 99.5 2.6E-13 5.7E-18 132.0 13.2 153 267-461 2-165 (175)
242 TIGR00437 feoB ferrous iron tr 99.5 1.8E-13 3.9E-18 158.2 14.0 137 273-461 1-145 (591)
243 cd04133 Rop_like Rop subfamily 99.5 1.5E-13 3.2E-18 135.4 11.1 154 267-461 2-163 (176)
244 cd03708 GTPBP_III Domain III o 99.5 2.6E-13 5.6E-18 117.9 11.2 85 584-689 2-87 (87)
245 KOG1489 Predicted GTP-binding 99.5 1.7E-13 3.6E-18 141.7 11.1 156 264-461 194-357 (366)
246 cd01896 DRG The developmentall 99.5 5.8E-13 1.3E-17 137.0 14.7 82 268-380 2-90 (233)
247 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 6.9E-13 1.5E-17 131.3 14.7 156 265-461 4-170 (182)
248 PF10662 PduV-EutP: Ethanolami 99.5 2.2E-13 4.7E-18 128.4 10.1 130 268-461 3-136 (143)
249 cd04148 RGK RGK subfamily. Th 99.5 7.1E-13 1.5E-17 135.3 14.6 148 267-461 1-153 (221)
250 KOG0084 GTPase Rab1/YPT1, smal 99.5 5.7E-13 1.2E-17 129.5 13.1 152 265-461 8-162 (205)
251 cd04131 Rnd Rnd subfamily. Th 99.5 9.9E-13 2.1E-17 129.7 14.7 153 267-461 2-166 (178)
252 PF01926 MMR_HSR1: 50S ribosom 99.5 7E-13 1.5E-17 121.0 12.4 107 268-414 1-116 (116)
253 cd03706 mtEFTU_III Domain III 99.5 8.4E-13 1.8E-17 116.3 12.3 86 585-689 3-93 (93)
254 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1E-12 2.2E-17 135.0 14.7 156 265-461 12-178 (232)
255 KOG0078 GTP-binding protein SE 99.4 7.7E-13 1.7E-17 130.2 11.8 154 265-461 11-164 (207)
256 smart00176 RAN Ran (Ras-relate 99.4 9E-13 2E-17 132.5 12.6 142 272-461 1-144 (200)
257 cd00882 Ras_like_GTPase Ras-li 99.4 9.4E-13 2E-17 121.7 11.6 144 271-461 1-150 (157)
258 KOG1191 Mitochondrial GTPase [ 99.4 4.7E-13 1E-17 145.4 10.6 154 264-461 266-440 (531)
259 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 2.4E-12 5.3E-17 131.4 14.4 152 267-461 2-166 (222)
260 PF00071 Ras: Ras family; Int 99.4 3.4E-12 7.3E-17 122.5 13.9 149 268-461 1-151 (162)
261 cd03707 EFTU_III Domain III of 99.4 2.2E-12 4.8E-17 112.8 11.4 83 585-686 3-90 (90)
262 KOG0073 GTP-binding ADP-ribosy 99.4 2.2E-12 4.8E-17 121.5 11.3 148 265-461 15-168 (185)
263 PRK09866 hypothetical protein; 99.4 3.2E-12 7E-17 144.1 14.4 108 343-461 229-343 (741)
264 KOG0098 GTPase Rab2, small G p 99.4 1.3E-12 2.9E-17 125.5 9.6 151 265-462 5-159 (216)
265 cd04105 SR_beta Signal recogni 99.4 4.4E-12 9.6E-17 127.7 13.5 113 268-419 2-123 (203)
266 KOG0394 Ras-related GTPase [Ge 99.4 2.5E-12 5.4E-17 123.5 10.9 157 263-461 6-168 (210)
267 cd04103 Centaurin_gamma Centau 99.4 3.2E-12 6.9E-17 123.5 11.3 145 267-461 1-149 (158)
268 cd04129 Rho2 Rho2 subfamily. 99.4 4E-12 8.8E-17 125.9 11.8 152 267-461 2-163 (187)
269 COG1084 Predicted GTPase [Gene 99.4 7.8E-12 1.7E-16 130.6 14.3 154 262-461 164-326 (346)
270 cd04104 p47_IIGP_like p47 (47- 99.4 5.8E-12 1.3E-16 126.2 12.6 151 267-460 2-173 (197)
271 PTZ00132 GTP-binding nuclear p 99.3 1.8E-11 4E-16 123.9 15.1 151 263-461 6-158 (215)
272 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 7.7E-12 1.7E-16 125.1 11.6 134 267-440 1-153 (196)
273 KOG0087 GTPase Rab11/YPT3, sma 99.3 6.7E-12 1.5E-16 123.2 10.5 148 265-462 13-167 (222)
274 cd01873 RhoBTB RhoBTB subfamil 99.3 1.5E-11 3.2E-16 123.2 13.1 106 341-461 63-186 (195)
275 KOG0080 GTPase Rab18, small G 99.3 3.3E-12 7.2E-17 119.7 7.4 151 265-461 10-164 (209)
276 COG0536 Obg Predicted GTPase [ 99.3 1.1E-11 2.4E-16 129.9 11.6 158 264-461 157-323 (369)
277 COG1163 DRG Predicted GTPase [ 99.3 1.1E-11 2.4E-16 129.0 11.3 86 264-380 61-153 (365)
278 cd04102 RabL3 RabL3 (Rab-like3 99.3 8.1E-11 1.8E-15 118.5 15.9 153 267-461 1-180 (202)
279 KOG0095 GTPase Rab30, small G 99.2 3E-11 6.5E-16 111.9 9.6 150 265-461 6-159 (213)
280 PF08477 Miro: Miro-like prote 99.2 2.2E-11 4.8E-16 111.0 8.5 114 268-416 1-119 (119)
281 KOG0086 GTPase Rab4, small G p 99.2 4.4E-11 9.5E-16 111.2 10.0 149 266-461 9-161 (214)
282 KOG1532 GTPase XAB1, interacts 99.2 5.3E-11 1.1E-15 120.9 11.2 180 264-461 17-254 (366)
283 PLN00023 GTP-binding protein; 99.2 1.2E-10 2.6E-15 123.8 14.0 142 263-441 18-189 (334)
284 KOG0093 GTPase Rab3, small G p 99.2 4.4E-11 9.5E-16 110.7 8.0 152 267-461 22-173 (193)
285 COG1100 GTPase SAR1 and relate 99.2 3.2E-10 6.8E-15 114.6 14.4 157 266-461 5-175 (219)
286 cd01850 CDC_Septin CDC/Septin. 99.2 4.6E-10 1E-14 118.4 15.8 143 266-440 4-176 (276)
287 cd04094 selB_III This family r 99.1 5.9E-10 1.3E-14 99.0 12.5 94 572-686 1-97 (97)
288 PF03029 ATP_bind_1: Conserved 99.1 1.1E-10 2.5E-15 120.3 8.9 171 271-461 1-227 (238)
289 COG3596 Predicted GTPase [Gene 99.1 1.7E-10 3.7E-15 118.2 9.8 154 263-461 36-212 (296)
290 KOG0070 GTP-binding ADP-ribosy 99.1 1.4E-10 3.1E-15 112.1 8.3 152 264-461 15-168 (181)
291 COG5192 BMS1 GTP-binding prote 99.1 1.3E-09 2.7E-14 119.3 16.4 250 253-562 56-321 (1077)
292 cd01899 Ygr210 Ygr210 subfamil 99.1 9E-10 2E-14 118.2 14.4 37 343-379 68-111 (318)
293 PF09439 SRPRB: Signal recogni 99.1 2.4E-10 5.2E-15 112.4 9.0 112 267-419 4-126 (181)
294 KOG0079 GTP-binding protein H- 99.1 3.1E-10 6.8E-15 105.2 8.9 149 267-461 9-159 (198)
295 KOG0076 GTP-binding ADP-ribosy 99.1 2.7E-10 5.8E-15 108.7 8.1 163 264-461 15-177 (197)
296 KOG0075 GTP-binding ADP-ribosy 99.1 4.6E-10 1E-14 104.1 8.1 149 267-461 21-172 (186)
297 KOG0410 Predicted GTP binding 99.0 6.1E-10 1.3E-14 115.7 9.0 142 263-461 175-331 (410)
298 cd03692 mtIF2_IVc mtIF2_IVc: t 99.0 1.6E-09 3.5E-14 93.6 10.1 76 497-575 3-82 (84)
299 KOG0097 GTPase Rab14, small G 99.0 2.3E-09 4.9E-14 98.6 11.1 145 266-461 11-163 (215)
300 cd01853 Toc34_like Toc34-like 99.0 5E-09 1.1E-13 108.8 14.2 121 262-419 27-163 (249)
301 PRK13768 GTPase; Provisional 99.0 2.5E-09 5.4E-14 111.5 11.7 105 343-461 96-237 (253)
302 PRK09602 translation-associate 99.0 3.9E-09 8.6E-14 116.5 13.4 81 267-378 2-113 (396)
303 PRK09435 membrane ATPase/prote 99.0 1.3E-09 2.9E-14 117.1 9.3 103 341-461 146-250 (332)
304 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 7.4E-09 1.6E-13 106.1 14.2 151 268-455 1-161 (232)
305 PTZ00099 rab6; Provisional 98.9 5.5E-09 1.2E-13 103.0 11.4 107 339-461 24-132 (176)
306 KOG0091 GTPase Rab39, small G 98.9 1.1E-09 2.3E-14 103.4 5.7 153 266-462 8-164 (213)
307 KOG0088 GTPase Rab21, small G 98.9 1.2E-09 2.5E-14 102.5 5.9 154 264-461 11-165 (218)
308 PF05049 IIGP: Interferon-indu 98.9 3.1E-09 6.6E-14 115.3 8.9 147 265-456 34-201 (376)
309 KOG0395 Ras-related GTPase [Ge 98.9 7.1E-09 1.5E-13 103.9 10.8 152 265-461 2-155 (196)
310 PTZ00258 GTP-binding protein; 98.9 2.1E-08 4.5E-13 110.0 15.3 83 265-378 20-126 (390)
311 cd03688 eIF2_gamma_II eIF2_gam 98.9 7.4E-09 1.6E-13 92.5 9.6 87 491-578 2-112 (113)
312 KOG0074 GTP-binding ADP-ribosy 98.9 8.6E-09 1.9E-13 95.1 9.7 151 264-461 15-169 (185)
313 TIGR00073 hypB hydrogenase acc 98.9 3.9E-09 8.6E-14 106.6 8.1 96 343-461 102-197 (207)
314 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2E-08 4.2E-13 106.5 13.4 122 261-419 33-167 (313)
315 KOG0090 Signal recognition par 98.9 4.9E-09 1.1E-13 103.5 8.2 113 267-419 39-159 (238)
316 KOG0081 GTPase Rab27, small G 98.8 2.5E-09 5.5E-14 100.3 3.9 102 344-461 67-171 (219)
317 KOG0071 GTP-binding ADP-ribosy 98.8 2.6E-08 5.6E-13 91.9 10.1 149 266-461 17-168 (180)
318 COG4917 EutP Ethanolamine util 98.8 8.3E-09 1.8E-13 93.6 6.6 130 268-461 3-136 (148)
319 PF00350 Dynamin_N: Dynamin fa 98.8 1.1E-08 2.3E-13 99.2 7.0 66 342-415 99-168 (168)
320 smart00053 DYNc Dynamin, GTPas 98.8 4E-08 8.7E-13 101.3 11.2 148 265-421 25-208 (240)
321 PF04548 AIG1: AIG1 family; I 98.8 8.9E-08 1.9E-12 97.2 13.6 134 267-440 1-154 (212)
322 TIGR02836 spore_IV_A stage IV 98.7 1.1E-07 2.3E-12 103.2 14.0 135 265-417 16-192 (492)
323 cd01342 Translation_Factor_II_ 98.7 8.2E-08 1.8E-12 80.3 9.4 79 495-576 1-82 (83)
324 TIGR00101 ureG urease accessor 98.7 4.4E-08 9.5E-13 98.5 8.7 96 343-461 91-186 (199)
325 TIGR00750 lao LAO/AO transport 98.7 1.8E-07 3.8E-12 100.1 13.6 102 341-461 124-228 (300)
326 KOG0077 Vesicle coat complex C 98.7 1E-07 2.3E-12 90.5 9.9 114 265-420 19-136 (193)
327 PF03144 GTP_EFTU_D2: Elongati 98.6 8.1E-08 1.7E-12 80.6 7.6 68 508-576 1-74 (74)
328 KOG0072 GTP-binding ADP-ribosy 98.6 2.5E-08 5.4E-13 92.4 4.6 150 265-461 17-169 (182)
329 KOG0083 GTPase Rab26/Rab37, sm 98.6 1E-08 2.3E-13 93.5 1.8 106 339-461 42-150 (192)
330 KOG2486 Predicted GTPase [Gene 98.6 1.3E-07 2.8E-12 97.0 9.8 157 264-462 134-307 (320)
331 cd01900 YchF YchF subfamily. 98.6 9.1E-08 2E-12 100.5 7.2 80 269-379 1-104 (274)
332 KOG4252 GTP-binding protein [S 98.6 2E-08 4.4E-13 96.0 1.9 152 264-461 18-171 (246)
333 PRK09601 GTP-binding protein Y 98.6 1.5E-07 3.2E-12 102.3 8.8 81 267-378 3-107 (364)
334 COG0378 HypB Ni2+-binding GTPa 98.6 5.6E-08 1.2E-12 95.5 4.9 94 344-461 97-191 (202)
335 KOG1486 GTP-binding protein DR 98.6 2.6E-07 5.6E-12 93.2 9.7 86 264-380 60-152 (364)
336 PF03308 ArgK: ArgK protein; 98.5 2.7E-07 5.8E-12 94.8 9.3 171 265-461 28-220 (266)
337 PRK10463 hydrogenase nickel in 98.5 1.1E-07 2.4E-12 100.1 5.0 97 342-461 183-279 (290)
338 KOG3886 GTP-binding protein [S 98.5 3.4E-07 7.4E-12 91.5 7.7 149 267-454 5-162 (295)
339 COG0012 Predicted GTPase, prob 98.5 1.6E-06 3.5E-11 93.1 13.3 90 266-379 2-109 (372)
340 COG1703 ArgK Putative periplas 98.5 1.2E-06 2.5E-11 91.3 11.5 100 342-461 142-244 (323)
341 TIGR00993 3a0901s04IAP86 chlor 98.5 2E-06 4.4E-11 98.2 14.3 118 265-419 117-250 (763)
342 PF00735 Septin: Septin; Inte 98.4 2.4E-06 5.2E-11 90.4 13.0 144 266-441 4-176 (281)
343 KOG0393 Ras-related small GTPa 98.4 4.5E-07 9.8E-12 90.0 6.6 155 265-461 3-169 (198)
344 KOG1707 Predicted Ras related/ 98.4 6.7E-07 1.4E-11 99.8 8.3 154 262-463 5-167 (625)
345 PF14578 GTP_EFTU_D4: Elongati 98.4 1.8E-06 3.9E-11 73.4 8.9 76 493-575 3-79 (81)
346 KOG0448 Mitofusin 1 GTPase, in 98.4 3E-06 6.5E-11 96.1 12.4 180 264-454 107-309 (749)
347 KOG1490 GTP-binding protein CR 98.3 8.8E-07 1.9E-11 97.1 7.8 157 263-461 165-331 (620)
348 KOG0096 GTPase Ran/TC4/GSP1 (n 98.3 5.6E-06 1.2E-10 80.6 10.1 152 264-462 8-160 (216)
349 cd04092 mtEFG2_II_like mtEFG2_ 98.2 5.1E-06 1.1E-10 71.5 8.7 76 497-577 3-83 (83)
350 cd04088 EFG_mtEFG_II EFG_mtEFG 98.2 5.8E-06 1.3E-10 71.0 8.7 76 497-577 3-83 (83)
351 cd01858 NGP_1 NGP-1. Autoanti 98.2 2.3E-06 5.1E-11 82.4 6.8 56 266-354 102-157 (157)
352 cd03690 Tet_II Tet_II: This su 98.2 5.5E-06 1.2E-10 71.7 8.3 78 493-576 2-84 (85)
353 KOG3883 Ras family small GTPas 98.2 5.5E-05 1.2E-09 71.2 14.8 148 265-461 8-165 (198)
354 cd04178 Nucleostemin_like Nucl 98.2 2.6E-06 5.7E-11 83.7 6.4 57 265-354 116-172 (172)
355 cd03699 lepA_II lepA_II: This 98.2 1.2E-05 2.5E-10 69.8 9.5 81 495-577 1-86 (86)
356 cd03691 BipA_TypA_II BipA_TypA 98.1 1.5E-05 3.2E-10 69.0 9.1 77 495-576 1-85 (86)
357 cd04091 mtEFG1_II_like mtEFG1_ 98.1 1.5E-05 3.2E-10 68.4 8.9 72 499-576 5-80 (81)
358 cd03689 RF3_II RF3_II: this su 98.1 1.5E-05 3.3E-10 69.0 9.0 74 499-577 3-84 (85)
359 KOG1487 GTP-binding protein DR 98.1 7.2E-06 1.6E-10 83.4 7.8 85 265-380 58-149 (358)
360 PRK14974 cell division protein 98.1 1.4E-05 3E-10 86.6 9.8 93 342-461 221-320 (336)
361 PRK10416 signal recognition pa 98.1 3.6E-05 7.8E-10 82.9 12.9 94 342-461 195-300 (318)
362 TIGR00064 ftsY signal recognit 98.0 8.7E-05 1.9E-09 78.3 13.9 67 342-419 153-231 (272)
363 KOG3905 Dynein light intermedi 98.0 3.5E-05 7.6E-10 80.7 10.4 53 403-461 221-280 (473)
364 KOG1954 Endocytosis/signaling 98.0 5E-05 1.1E-09 80.8 11.1 169 266-459 58-262 (532)
365 cd01858 NGP_1 NGP-1. Autoanti 98.0 1.8E-05 4E-10 76.2 7.4 82 361-461 2-85 (157)
366 KOG1547 Septin CDC10 and relat 97.9 9.6E-05 2.1E-09 74.6 12.2 142 266-441 46-218 (336)
367 cd01849 YlqF_related_GTPase Yl 97.9 1.3E-05 2.9E-10 77.0 6.1 57 265-354 99-155 (155)
368 cd01859 MJ1464 MJ1464. This f 97.9 1.8E-05 4E-10 75.9 6.9 78 364-461 9-86 (156)
369 COG5019 CDC3 Septin family pro 97.9 0.00013 2.7E-09 78.4 13.7 144 265-441 22-196 (373)
370 PF00641 zf-RanBP: Zn-finger i 97.9 3.4E-06 7.4E-11 58.3 1.2 29 48-76 2-30 (30)
371 TIGR01425 SRP54_euk signal rec 97.9 6.6E-05 1.4E-09 83.5 11.9 65 342-418 181-252 (429)
372 KOG1534 Putative transcription 97.9 6.6E-05 1.4E-09 74.5 10.0 72 344-419 98-178 (273)
373 PF00448 SRP54: SRP54-type pro 97.9 5.7E-05 1.2E-09 75.8 9.7 67 342-419 82-154 (196)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 3.9E-05 8.4E-10 72.6 8.0 80 359-458 3-84 (141)
375 COG1161 Predicted GTPases [Gen 97.9 1.8E-05 3.8E-10 85.5 6.2 57 264-353 130-186 (322)
376 cd03115 SRP The signal recogni 97.9 0.00016 3.5E-09 70.6 12.3 67 342-419 81-153 (173)
377 cd01855 YqeH YqeH. YqeH is an 97.8 2.2E-05 4.8E-10 78.0 5.8 63 267-354 128-190 (190)
378 cd01851 GBP Guanylate-binding 97.8 0.00013 2.9E-09 74.7 11.6 91 264-379 5-103 (224)
379 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.3E-05 5.1E-10 74.1 5.6 22 268-289 85-106 (141)
380 KOG1673 Ras GTPases [General f 97.8 7.1E-05 1.5E-09 70.7 8.5 154 265-461 19-176 (205)
381 PRK09563 rbgA GTPase YlqF; Rev 97.8 3.5E-05 7.6E-10 81.9 7.3 57 265-354 120-176 (287)
382 cd01856 YlqF YlqF. Proteins o 97.8 2.7E-05 5.9E-10 76.1 6.0 89 351-461 2-91 (171)
383 TIGR00092 GTP-binding protein 97.8 3.8E-05 8.2E-10 83.7 7.4 90 267-379 3-109 (368)
384 PRK11889 flhF flagellar biosyn 97.8 5.2E-05 1.1E-09 82.9 7.9 66 343-419 320-391 (436)
385 TIGR03596 GTPase_YlqF ribosome 97.8 4E-05 8.8E-10 81.0 6.7 57 265-354 117-173 (276)
386 cd03112 CobW_like The function 97.8 4.8E-05 1E-09 73.6 6.6 65 343-417 86-158 (158)
387 PF03193 DUF258: Protein of un 97.7 2.3E-05 4.9E-10 75.9 3.9 23 267-289 36-58 (161)
388 PRK12288 GTPase RsgA; Reviewed 97.7 3.8E-05 8.3E-10 83.7 6.0 64 269-358 208-271 (347)
389 cd01856 YlqF YlqF. Proteins o 97.7 6.3E-05 1.4E-09 73.5 6.8 57 265-354 114-170 (171)
390 KOG1533 Predicted GTPase [Gene 97.7 0.00011 2.3E-09 74.2 8.2 73 343-419 96-177 (290)
391 cd01849 YlqF_related_GTPase Yl 97.7 9.9E-05 2.1E-09 70.9 7.3 74 369-461 1-75 (155)
392 KOG4423 GTP-binding protein-li 97.7 1.6E-06 3.5E-11 84.0 -5.1 153 266-462 25-185 (229)
393 TIGR03596 GTPase_YlqF ribosome 97.7 5.9E-05 1.3E-09 79.8 6.1 88 352-461 5-93 (276)
394 cd01855 YqeH YqeH. YqeH is an 97.7 9.6E-05 2.1E-09 73.4 7.3 91 357-461 24-115 (190)
395 TIGR00157 ribosome small subun 97.7 7.8E-05 1.7E-09 77.5 6.8 82 363-461 32-113 (245)
396 TIGR00157 ribosome small subun 97.6 6.5E-05 1.4E-09 78.1 5.9 63 268-357 122-184 (245)
397 COG1162 Predicted GTPases [Gen 97.6 6.8E-05 1.5E-09 79.1 5.8 64 268-357 166-229 (301)
398 PRK14722 flhF flagellar biosyn 97.6 0.00021 4.5E-09 78.4 9.6 24 266-289 137-160 (374)
399 PRK12289 GTPase RsgA; Reviewed 97.6 6.2E-05 1.3E-09 82.2 5.4 23 268-290 174-196 (352)
400 COG3640 CooC CO dehydrogenase 97.6 0.00021 4.5E-09 72.5 8.5 65 343-418 133-198 (255)
401 PRK12289 GTPase RsgA; Reviewed 97.6 0.00019 4E-09 78.4 8.8 80 364-461 86-165 (352)
402 KOG1491 Predicted GTP-binding 97.6 0.00017 3.6E-09 76.5 7.6 84 265-379 19-126 (391)
403 KOG2655 Septin family protein 97.6 0.00068 1.5E-08 73.3 12.3 143 265-440 20-191 (366)
404 cd03110 Fer4_NifH_child This p 97.6 0.00047 1E-08 67.6 10.4 66 342-418 91-156 (179)
405 PRK00098 GTPase RsgA; Reviewed 97.5 0.00025 5.4E-09 75.9 8.5 80 365-461 78-157 (298)
406 smart00547 ZnF_RBZ Zinc finger 97.5 3.7E-05 7.9E-10 51.2 1.2 25 49-73 1-25 (26)
407 PF05783 DLIC: Dynein light in 97.5 0.00089 1.9E-08 75.6 12.9 53 403-461 195-254 (472)
408 PRK14721 flhF flagellar biosyn 97.5 0.00023 5E-09 79.2 8.0 68 341-419 267-340 (420)
409 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00025 5.5E-09 69.9 7.5 82 343-435 84-170 (178)
410 cd03114 ArgK-like The function 97.5 0.0007 1.5E-08 64.9 9.9 59 342-416 90-148 (148)
411 cd03700 eEF2_snRNP_like_II EF2 97.5 0.00049 1.1E-08 60.5 8.0 73 498-575 4-91 (93)
412 PRK09563 rbgA GTPase YlqF; Rev 97.4 0.0002 4.4E-09 76.1 6.2 89 351-461 7-96 (287)
413 PRK13796 GTPase YqeH; Provisio 97.4 0.0002 4.2E-09 78.9 6.2 61 267-355 161-221 (365)
414 TIGR03597 GTPase_YqeH ribosome 97.4 0.00021 4.6E-09 78.5 6.4 92 267-386 155-256 (360)
415 cd01859 MJ1464 MJ1464. This f 97.4 0.00027 5.8E-09 67.8 6.3 23 266-288 101-123 (156)
416 PRK12724 flagellar biosynthesi 97.4 0.00074 1.6E-08 74.8 10.4 67 342-419 298-373 (432)
417 cd04090 eEF2_II_snRNP Loc2 eEF 97.4 0.0009 2E-08 59.0 8.8 67 497-565 3-83 (94)
418 PRK06731 flhF flagellar biosyn 97.4 0.0006 1.3E-08 71.8 8.9 66 343-419 154-225 (270)
419 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00031 6.7E-09 74.8 6.2 65 267-357 162-226 (287)
420 PRK00771 signal recognition pa 97.3 0.0011 2.4E-08 74.4 10.8 63 344-418 176-245 (437)
421 PRK12723 flagellar biosynthesi 97.3 0.00091 2E-08 73.9 9.4 67 342-419 253-326 (388)
422 PRK10867 signal recognition pa 97.3 0.001 2.2E-08 74.5 9.9 65 342-418 182-253 (433)
423 PRK12726 flagellar biosynthesi 97.3 0.00054 1.2E-08 74.8 7.3 65 343-418 285-355 (407)
424 PRK12727 flagellar biosynthesi 97.3 0.00082 1.8E-08 76.3 8.7 25 265-289 349-373 (559)
425 COG0523 Putative GTPases (G3E 97.3 0.0017 3.6E-08 70.2 10.7 93 343-453 84-184 (323)
426 PRK05703 flhF flagellar biosyn 97.2 0.0018 3.8E-08 72.7 10.9 66 342-418 298-370 (424)
427 TIGR03597 GTPase_YqeH ribosome 97.2 0.00055 1.2E-08 75.2 6.5 94 354-461 50-143 (360)
428 COG1419 FlhF Flagellar GTP-bin 97.2 0.0018 3.9E-08 70.9 10.4 132 265-419 202-352 (407)
429 KOG0447 Dynamin-like GTP bindi 97.2 0.0027 5.9E-08 70.6 11.6 147 264-420 306-494 (980)
430 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.001 2.3E-08 70.7 8.3 79 365-461 76-154 (287)
431 TIGR00959 ffh signal recogniti 97.2 0.0017 3.7E-08 72.7 9.9 65 342-418 181-252 (428)
432 KOG2485 Conserved ATP/GTP bind 97.2 0.00052 1.1E-08 72.2 5.4 65 264-353 141-205 (335)
433 PRK12288 GTPase RsgA; Reviewed 97.1 0.0013 2.7E-08 71.9 8.5 81 365-461 118-198 (347)
434 PF09547 Spore_IV_A: Stage IV 97.1 0.0087 1.9E-07 65.7 14.7 27 265-291 16-42 (492)
435 PF00503 G-alpha: G-protein al 97.1 0.0032 6.9E-08 69.9 11.4 86 330-418 221-316 (389)
436 PRK06995 flhF flagellar biosyn 97.1 0.0034 7.4E-08 71.1 11.2 67 341-418 332-404 (484)
437 TIGR00487 IF-2 translation ini 97.1 0.0033 7.1E-08 73.3 11.4 177 347-576 390-575 (587)
438 PRK00098 GTPase RsgA; Reviewed 97.1 0.00077 1.7E-08 72.1 5.7 23 267-289 165-187 (298)
439 PRK01889 GTPase RsgA; Reviewed 97.0 0.0018 4E-08 71.0 8.7 78 365-461 110-187 (356)
440 PRK11537 putative GTP-binding 97.0 0.0049 1.1E-07 66.6 11.6 66 344-419 91-164 (318)
441 cd02036 MinD Bacterial cell di 97.0 0.0053 1.2E-07 59.6 10.7 64 345-418 64-127 (179)
442 KOG1424 Predicted GTP-binding 97.0 0.00064 1.4E-08 75.6 4.3 57 265-354 313-369 (562)
443 COG0541 Ffh Signal recognition 97.0 0.00076 1.6E-08 74.0 4.9 136 263-418 97-252 (451)
444 PRK14723 flhF flagellar biosyn 96.9 0.0021 4.4E-08 76.2 8.4 23 267-289 186-208 (767)
445 KOG0082 G-protein alpha subuni 96.9 0.01 2.3E-07 64.3 12.7 84 331-418 182-275 (354)
446 cd03111 CpaE_like This protein 96.9 0.0068 1.5E-07 54.6 9.6 60 345-414 44-106 (106)
447 CHL00189 infB translation init 96.9 0.0078 1.7E-07 71.6 12.5 178 346-576 546-731 (742)
448 PRK05306 infB translation init 96.9 0.0086 1.9E-07 71.8 12.7 176 348-576 593-777 (787)
449 PRK13796 GTPase YqeH; Provisio 96.8 0.0032 6.9E-08 69.3 8.2 90 356-461 58-149 (365)
450 KOG3887 Predicted small GTPase 96.8 0.0019 4.2E-08 65.5 5.3 152 267-455 28-187 (347)
451 TIGR02475 CobW cobalamin biosy 96.8 0.0081 1.8E-07 65.5 10.6 91 343-436 92-202 (341)
452 KOG0780 Signal recognition par 96.7 0.0053 1.2E-07 66.3 8.7 125 265-418 100-253 (483)
453 cd02038 FleN-like FleN is a me 96.7 0.017 3.8E-07 54.5 11.3 65 344-418 45-110 (139)
454 KOG2743 Cobalamin synthesis pr 96.7 0.014 3E-07 61.3 10.7 85 343-434 145-238 (391)
455 KOG2484 GTPase [General functi 96.6 0.0016 3.5E-08 70.5 4.0 61 261-354 247-307 (435)
456 COG1162 Predicted GTPases [Gen 96.5 0.0076 1.6E-07 63.8 8.0 81 365-461 77-157 (301)
457 PF09173 eIF2_C: Initiation fa 96.5 0.026 5.7E-07 49.0 9.8 72 587-686 3-88 (88)
458 KOG4181 Uncharacterized conser 96.5 0.025 5.5E-07 60.3 11.4 25 265-289 187-211 (491)
459 cd00066 G-alpha G protein alph 96.5 0.0095 2.1E-07 64.4 8.7 84 331-418 148-241 (317)
460 COG0552 FtsY Signal recognitio 96.4 0.016 3.4E-07 62.1 9.8 27 264-290 137-163 (340)
461 TIGR03348 VI_IcmF type VI secr 96.4 0.0075 1.6E-07 76.0 8.1 18 269-286 114-131 (1169)
462 PRK08099 bifunctional DNA-bind 96.3 0.02 4.3E-07 63.8 10.0 30 264-293 217-246 (399)
463 smart00275 G_alpha G protein a 96.3 0.017 3.8E-07 63.0 9.4 87 331-418 171-264 (342)
464 COG0532 InfB Translation initi 96.2 0.017 3.7E-07 65.1 8.7 78 496-576 415-496 (509)
465 KOG2423 Nucleolar GTPase [Gene 96.0 0.0029 6.2E-08 68.3 1.6 28 263-290 304-331 (572)
466 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.065 1.4E-06 45.7 9.9 69 269-380 2-71 (99)
467 cd02042 ParA ParA and ParB of 96.0 0.041 9E-07 48.7 8.7 35 344-380 40-74 (104)
468 cd03702 IF2_mtIF2_II This fami 95.9 0.043 9.4E-07 48.6 8.4 72 499-576 5-78 (95)
469 PRK13695 putative NTPase; Prov 95.8 0.033 7.1E-07 54.5 8.1 22 268-289 2-23 (174)
470 KOG1707 Predicted Ras related/ 95.8 0.055 1.2E-06 61.5 10.5 148 260-455 419-568 (625)
471 smart00010 small_GTPase Small 95.7 0.014 2.9E-07 52.8 4.5 21 267-287 1-21 (124)
472 CHL00175 minD septum-site dete 95.5 0.074 1.6E-06 56.2 9.8 65 343-417 126-190 (281)
473 PRK01889 GTPase RsgA; Reviewed 95.3 0.018 3.9E-07 63.3 4.7 24 267-290 196-219 (356)
474 PRK10751 molybdopterin-guanine 95.2 0.065 1.4E-06 52.8 7.5 24 265-288 5-28 (173)
475 cd04178 Nucleostemin_like Nucl 95.1 0.027 5.9E-07 55.4 4.6 53 369-432 1-55 (172)
476 TIGR00491 aIF-2 translation in 94.9 0.062 1.4E-06 62.8 7.7 75 501-577 473-549 (590)
477 KOG4477 RING1 interactor RYBP 94.8 0.015 3.2E-07 56.1 2.0 28 47-74 21-48 (228)
478 cd03701 IF2_IF5B_II IF2_IF5B_I 94.8 0.12 2.6E-06 45.7 7.5 71 499-575 5-77 (95)
479 PF13207 AAA_17: AAA domain; P 94.7 0.033 7.1E-07 50.6 3.8 25 268-292 1-25 (121)
480 KOG3859 Septins (P-loop GTPase 94.5 0.079 1.7E-06 55.1 6.4 25 264-288 40-64 (406)
481 KOG2484 GTPase [General functi 94.4 0.09 2E-06 57.3 6.7 78 348-434 126-204 (435)
482 TIGR01526 nadR_NMN_Atrans nico 94.3 0.24 5.1E-06 53.8 10.1 27 267-293 163-189 (325)
483 COG1341 Predicted GTPase or GT 94.3 0.12 2.6E-06 56.7 7.6 29 263-291 70-98 (398)
484 cd03703 aeIF5B_II aeIF5B_II: T 94.2 0.33 7.2E-06 44.0 9.0 74 499-575 5-92 (110)
485 COG3523 IcmF Type VI protein s 94.1 0.072 1.6E-06 66.0 6.1 18 269-286 128-145 (1188)
486 KOG0781 Signal recognition par 93.9 0.16 3.4E-06 56.6 7.5 72 342-419 465-544 (587)
487 COG1618 Predicted nucleotide k 93.8 0.26 5.5E-06 47.8 7.9 24 265-288 4-27 (179)
488 PF13555 AAA_29: P-loop contai 93.8 0.061 1.3E-06 43.7 3.2 22 268-289 25-46 (62)
489 PF13671 AAA_33: AAA domain; P 93.7 0.059 1.3E-06 50.3 3.5 23 269-291 2-24 (143)
490 PRK04004 translation initiatio 93.7 0.18 3.8E-06 59.1 8.1 74 501-576 475-550 (586)
491 PF03205 MobB: Molybdopterin g 93.7 0.064 1.4E-06 50.9 3.7 22 268-289 2-23 (140)
492 PRK08233 hypothetical protein; 93.5 0.072 1.6E-06 51.9 3.9 26 266-291 3-28 (182)
493 cd02037 MRP-like MRP (Multiple 93.4 0.23 5E-06 48.2 7.2 67 342-418 66-134 (169)
494 COG0563 Adk Adenylate kinase a 93.4 0.072 1.6E-06 52.7 3.6 25 268-292 2-26 (178)
495 PRK08118 topology modulation p 93.4 0.072 1.6E-06 52.0 3.5 25 268-292 3-27 (167)
496 TIGR00235 udk uridine kinase. 93.3 0.084 1.8E-06 53.2 4.0 27 265-291 5-31 (207)
497 PF06858 NOG1: Nucleolar GTP-b 93.3 0.36 7.9E-06 38.6 6.6 50 362-416 7-58 (58)
498 PRK07261 topology modulation p 93.3 0.076 1.6E-06 52.0 3.5 22 268-289 2-23 (171)
499 KOG1144 Translation initiation 93.2 0.49 1.1E-05 55.2 10.2 56 508-563 950-1007(1064)
500 PRK14530 adenylate kinase; Pro 93.2 0.084 1.8E-06 53.5 3.8 27 266-292 3-29 (215)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-90 Score=731.04 Aligned_cols=423 Identities=43% Similarity=0.745 Sum_probs=412.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+++++++++||+|||||||+++|++++|.|+.+.+++++++++..|+++|.|+|+||.+++||++|+|+++++..|+++
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
.+.|+|+|+|||++|+++|+.++++||++||||||+.+.||++|. +.+||+||+.+++.+|+.++||++||||+++|++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~-~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFG-VGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccc-cCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999999999994 5799999999999999999999999999999999
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceEeE
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~~v 502 (694)
+||+++++++..+++.+||.+.+++|||+||..|+|+.+.. ..++||+|+|||++|+.+.+|.+..++|||++|+++
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s---~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v 239 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS---ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDV 239 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC---cCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeE
Confidence 99999999999999999999889999999999999998865 379999999999999999999999999999999999
Q ss_pred EecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCCC
Q 005478 503 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (694)
Q Consensus 503 ~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~~ 581 (694)
+.+. .|+| ..|||++|.|++||+|.++|.+...+|++|++++++++.|.|||+|++.|+|+...+|++|+|++++++|
T Consensus 240 ~~i~~~gtv-~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~ 318 (428)
T COG5256 240 YSISGIGTV-PVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNP 318 (428)
T ss_pred EEecCCceE-EEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCC
Confidence 9977 9999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEee
Q 005478 582 VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVE 661 (694)
Q Consensus 582 ~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e 661 (694)
+..+..|.|++.+|.|+.+|.+||.+.||+|+..++|+|.+|..++|+.||+..+++|.+++.|+.+.|+|++.+|+|++
T Consensus 319 ~t~s~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e 398 (428)
T COG5256 319 PTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLE 398 (428)
T ss_pred cccccceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEee
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceEEEEeCCcEEEEEEEEeec
Q 005478 662 EFSNCRALGRAFLRSSGRTIAVGIVTRII 690 (694)
Q Consensus 662 ~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~ 690 (694)
.++++++||||+||+.|+|||+|+|..+.
T Consensus 399 ~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 399 KVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred ecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 99999999999999999999999999875
No 2
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-84 Score=700.68 Aligned_cols=428 Identities=49% Similarity=0.818 Sum_probs=416.0
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
...+.+++++++||+|+|||||+++|++.+|.|.++.|+++++++...|+++|.|+|.+|...+||++|+|++++...|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
...+.++|+|+|||.+|+++|+.++.+||++||||||+.+.||.||+ +.+||+||+.+++.||+.++||+|||||+++|
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 99999999999999999999999999999999999999999999999 78999999999999999999999999999999
Q ss_pred chhhHhHHHHhhccch-hcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccce
Q 005478 421 SKDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l-~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I 499 (694)
+++||++|+..+..|| +.+||...++.|||+|+++|+|+....+.+.+..||+|+|||+.|+.+.+|.+..++||+|.|
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTI 410 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEh
Confidence 9999999999999999 889999999999999999999999988888899999999999999999999999999999999
Q ss_pred EeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceee-c
Q 005478 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC-H 577 (694)
Q Consensus 500 ~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~-~ 577 (694)
.++++.+ .| +.++|+|++|.|+.||+|+++|+...++|++|.+++.++.+|.|||.|.+.|.++++..++.|+|++ .
T Consensus 411 sdi~~~~~~~-~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~ 489 (603)
T KOG0458|consen 411 SDIYPLPSSG-VSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSG 489 (603)
T ss_pred hheeecCCCe-eEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecC
Confidence 9999999 67 4599999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCCCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCce
Q 005478 578 PDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEP 657 (694)
Q Consensus 578 ~~~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~p 657 (694)
+.+|++.+..|.+++.||+...||..|.++.+|+|+..++|++.+++..+++.||+..|+.|++|..||.|.+++++..|
T Consensus 490 ~~~~i~~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~~p 569 (603)
T KOG0458|consen 490 PQFPISKTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETERP 569 (603)
T ss_pred CCccccceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeeccccCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccCCcceEEEEeCCcEEEEEEEEeec
Q 005478 658 VCVEEFSNCRALGRAFLRSSGRTIAVGIVTRII 690 (694)
Q Consensus 658 i~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~ 690 (694)
||++.|.+++++|||+||..|+|||+|+|++|.
T Consensus 570 I~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 570 ICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred hhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 999999999999999999999999999999985
No 3
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=6.3e-80 Score=685.86 Aligned_cols=424 Identities=36% Similarity=0.665 Sum_probs=402.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.++++||+++||+|+|||||+++|++.++.++.+.++++++++...++++|.|+|++|..++|+++|+|+++++..|++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46789999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc--cc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv--~~ 420 (694)
++.++|+|||||++|.++|+.+++.+|++||||||..|.|++++.. .+||++|+.++..+|+|++|||+||||+. .|
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~-~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK-DGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCC-CchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 9999999999999999999999999999999999999999888764 47999999999999999899999999987 57
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceE
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~ 500 (694)
++++|+++.+++..+++..||....++|||+||++|+|+.+... .++||+|++|+++|+.+++|.+..+.||||+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~---~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST---NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccccc---CCcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 78899999999999999999987778999999999999977543 389999999999999998888888999999999
Q ss_pred eEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecC-
Q 005478 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP- 578 (694)
Q Consensus 501 ~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~- 578 (694)
++|+++ .|+| +.|+|++|.|++||+|.++|++..++|++|++++.++++|.|||+|+|.|++++..++++|+|||++
T Consensus 240 ~v~~~~g~G~v-v~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 240 DVYKIGGIGTV-PVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred EEEEeCCcEEE-EEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCC
Confidence 999998 8998 8999999999999999999999999999999999999999999999999999998999999999997
Q ss_pred CCCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceE
Q 005478 579 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 658 (694)
Q Consensus 579 ~~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi 658 (694)
+.|+..+++|+|+|+||+++.+|..||++.||+|+.+++|+|.+|.+++|.+||+.++++|++|++|+.|.|+|+|.+|+
T Consensus 319 ~~p~~~~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi 398 (447)
T PLN00043 319 DDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPM 398 (447)
T ss_pred CCCCccccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcE
Confidence 56777899999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 659 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 659 ~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
|+|+|.++++||||+||++|.|||+|+|+++..
T Consensus 399 ~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~ 431 (447)
T PLN00043 399 VVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEK 431 (447)
T ss_pred EEEecccCCCCceEEEEECCCeEEEEEEEEEec
Confidence 999999999999999999999999999999874
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.1e-78 Score=676.14 Aligned_cols=425 Identities=39% Similarity=0.710 Sum_probs=403.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.++++||+++||+|+|||||+++|++..+.++.+.++++++++...|+++++|+|++|...+|+++|+|++.++..|+++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc--cccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQY 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D--lv~~ 420 (694)
++.++|+|||||.+|.++|+.++..+|++||||||..|+||.+|+. .+||++|+.++..+|+|++|||+|||| +++|
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~-~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISK-DGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC-CccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999999988874 579999999999999998999999999 6678
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceE
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~ 500 (694)
++++|+++.+++..+|+.+++....++|||+||++|+|+.++.. .++||+|++|+++|+.+++|.+..++||+|+|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 89999999999999999999977789999999999999976432 589999999999999988888888999999999
Q ss_pred eEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCC
Q 005478 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 501 ~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
++|+++ .|+| ++|+|++|+|++||+|.++|++..++|++|+.++.++++|.|||+|+|.|++++..++++|+||++++
T Consensus 240 ~v~~v~g~Gtv-v~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 240 DVYKIGGIGTV-PVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred EEEecCCceEE-EEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999998 8998 89999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred -CCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceE
Q 005478 580 -FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 658 (694)
Q Consensus 580 -~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi 658 (694)
.|+..+++|+|+|.||+++.||++||++++|+|+.+++|+|.+|.+++|++||+..+++|++|++|+.+.|+|+|++||
T Consensus 319 ~~p~~~~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 398 (446)
T PTZ00141 319 NDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPM 398 (446)
T ss_pred CCCCccceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCce
Confidence 5666789999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeeccc
Q 005478 659 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIED 692 (694)
Q Consensus 659 ~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~~ 692 (694)
|+++|++++.+|||+||+.|+|||+|+|++|...
T Consensus 399 ~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~ 432 (446)
T PTZ00141 399 CVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKK 432 (446)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEEecC
Confidence 9999999999999999999999999999998754
No 5
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=6.8e-76 Score=653.83 Aligned_cols=419 Identities=40% Similarity=0.716 Sum_probs=395.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+++++|+++||+|||||||+++|++..+.++.+.++++++++...|+.++.|+|.+|..++|+++|+|++.....|+++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCC--CccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV--GSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~--g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
++.++|||||||++|.++++.++..+|++|||||+.. + ...++++|+.++..++++++|||+||||++++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG--------VMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC--------CCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999999999999999999987 4 25789999999999998779999999999877
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceE
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~ 500 (694)
++++++.+.+++..+++.+++....++++++||++|+|+.++.. .++||+|++|+++|+.+++|.+..++||+|+|+
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~---~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~ 231 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE---NMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQ 231 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc---CCCcccHHHHHHHHhcCCCCccccCCCcEEEEE
Confidence 77788888899999998888866668899999999999988654 489999999999999998888888999999999
Q ss_pred eEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCC
Q 005478 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 501 ~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
++|.++ .|+| ++|+|++|+|++||+|+++|.+..++|++|+.++.+++.|.|||+|+|.|++++..++++|+||++++
T Consensus 232 ~~~~~~g~G~v-v~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 232 DVYSISGVGTV-PVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEeeCCCeEE-EEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 999998 8998 89999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 005478 580 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 659 (694)
Q Consensus 580 ~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~ 659 (694)
.++..+++|+|+|.||+++.||++||++.+|+|+.+++|+|.+|.+.+|++|++..+++|++|++|+.|.|+|+|.+|+|
T Consensus 311 ~~~~~~~~f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~ 390 (425)
T PRK12317 311 NPPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLV 390 (425)
T ss_pred CCCCcccEEEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeE
Confidence 88888999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEEEeecccC
Q 005478 660 VEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQ 693 (694)
Q Consensus 660 ~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~~~ 693 (694)
+++|+++++||||+||++|+|||+|+|+++.+.+
T Consensus 391 ~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~~ 424 (425)
T PRK12317 391 IEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPAK 424 (425)
T ss_pred EEeCCcCCCCccEEEEECCCeEEEEEEEEeccCC
Confidence 9999999999999999999999999999998653
No 6
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.2e-75 Score=648.41 Aligned_cols=421 Identities=38% Similarity=0.693 Sum_probs=397.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+++++|+++||+|||||||+++|++..+.++.+.++++++++...|+++|.|+|++|..++|+++|+|++.....|.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
+..++|||||||++|.++++.++..+|++|||||++.+.++ ...++.+|+.++..++++++|||+||+|++++++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 99999999999999999999999999999999999988543 2468899999999999887999999999998778
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceEeE
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~~v 502 (694)
++++.+.+++..+++..++....++|+++||++|+|+.++.. .++||+|++|+++|+.+++|.+..++||+|+|+++
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~---~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v 235 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE---NTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDV 235 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc---CCccccchHHHHHHhcCCCCCCccCCCcEEEEEEE
Confidence 888889999999999888876678999999999999988654 37999999999999999888888889999999999
Q ss_pred EecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCCC
Q 005478 503 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (694)
Q Consensus 503 ~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~~ 581 (694)
|+++ .|+| ++|+|++|+|++||+|+++|.+..++|++|++++.++++|.|||+|+|+|++++..++++|+||++++.+
T Consensus 236 ~~~~g~G~v-v~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 236 YSITGVGTV-PVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNP 314 (426)
T ss_pred EecCCCeEE-EEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCC
Confidence 9998 9998 8999999999999999999999999999999999999999999999999999999999999999998878
Q ss_pred cceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEee
Q 005478 582 VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVE 661 (694)
Q Consensus 582 ~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e 661 (694)
+..+++|+|++.||+++.||..|++++||+|+.+++|+|.+|.+.+|+++++..+++|++|++|+.|.|+|.|.+|+|++
T Consensus 315 ~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e 394 (426)
T TIGR00483 315 PKVAKEFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIE 394 (426)
T ss_pred CceeeEEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEe
Confidence 88899999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cccccCCcceEEEEeCCcEEEEEEEEeeccc
Q 005478 662 EFSNCRALGRAFLRSSGRTIAVGIVTRIIED 692 (694)
Q Consensus 662 ~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~~ 692 (694)
+|.+++.+|||+||+.|+|||+|+|+++..+
T Consensus 395 ~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 395 AVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred ecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 9999999999999999999999999998764
No 7
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-75 Score=606.15 Aligned_cols=424 Identities=38% Similarity=0.694 Sum_probs=407.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec
Q 005478 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 262 ~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~ 341 (694)
..+.++|++|+||+++||||+-+.|++..+.++.+.+++|++++++.++.+|+++|.||...+||+.|-|+.++..+|++
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc--ccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQ 419 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D--lv~ 419 (694)
...+++++|+|||..|+.+|+.++.+||+++||+.|..|.||.+|.. .+||++|..+++.+|+.++||++|||| .++
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFer-GgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccccc-ccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 99999999999999999999999999999999999999999999997 589999999999999999999999999 568
Q ss_pred cchhhHhHHHHhhccchhcccccC-CCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMP 498 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~-~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~ 498 (694)
|+.+||+++...+..+|..+||+. ..+.|+|+|+++|.++.+..+ ..++||.|+++|+.|+.++...|..+.||++|
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~p 311 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPIFLEYLDELPHLERILNGPIRCP 311 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCccceehhccCcccccCCCCEEee
Confidence 999999999999999999999875 356899999999999988654 57999999999999999998899999999999
Q ss_pred eEeEEecCCCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecC
Q 005478 499 ICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 499 I~~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~ 578 (694)
|.+-|+. .|+| +.|+|++|.|++||.++++|.+..+.|.+|......++.+.||++|.|.|+||+.++|..|.|||++
T Consensus 312 I~~Kykd-mGTv-v~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~ 389 (501)
T KOG0459|consen 312 VANKYKD-MGTV-VGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSP 389 (501)
T ss_pred hhhhccc-cceE-EEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecC
Confidence 9999887 6999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceE
Q 005478 579 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 658 (694)
Q Consensus 579 ~~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi 658 (694)
++|....+.|.|+|.+|+|+.-|.+||.++||||+....|.| +++..+|++||+..|+.|+|++.|+.+.++|+...||
T Consensus 390 ~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~i 468 (501)
T KOG0459|consen 390 NNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPI 468 (501)
T ss_pred CCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCcE
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 659 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 659 ~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
|++.|.++|++|||.||++|+|||+|+|+++.+
T Consensus 469 Cle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 469 CLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred ehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 999999999999999999999999999999864
No 8
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-72 Score=579.19 Aligned_cols=410 Identities=30% Similarity=0.522 Sum_probs=381.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCC--CccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~--gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
.+..++++.+|++|.||||||+||+++...|...++..+++.++..|. +.+.|+.++|.+..||++|||||+++++|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456799999999999999999999999999999999999998875544 568899999999999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
+.++.|++.|||||+.|.+||..|++-||++|++|||.+|+ ..||++|..++..||++++||+||||||++|
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--------l~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--------LEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--------HHHhHHHHHHHHHhCCcEEEEEEeeeccccc
Confidence 99999999999999999999999999999999999999986 5799999999999999999999999999999
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceE
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~ 500 (694)
++++|++|..++..|.+.+++.. +.+||+||+.|+|+..+. ..|+||+|++||+.|+.+........+||||||+
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s---~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ 229 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKD--VRFIPISALLGDNVVSKS---ENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQ 229 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc--ceEEechhccCCcccccc---cCCCcccCccHHHHHhhccccccccccceeeceE
Confidence 99999999999999999999964 589999999999998764 3599999999999999988877777889999999
Q ss_pred eEEecCCCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCC
Q 005478 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (694)
Q Consensus 501 ~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~ 580 (694)
.|.+.......+.|+|.+|++++||.|++.|+|+..+|+.|..+...+++|.+|+.|+|.|. +..++.||++|+..+.
T Consensus 230 ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~ 307 (431)
T COG2895 230 YVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADA 307 (431)
T ss_pred EecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCC
Confidence 99998733333789999999999999999999999999999999999999999999999997 3456888999999999
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005478 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 660 (694)
Q Consensus 581 ~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~ 660 (694)
++.++..|.|.++|+. +.||.+|..|.+.+++.++.|+|..|.+.+|.+|.+.. .++.|..|+.+.|++.+++|+++
T Consensus 308 ~~~~~~~f~A~vvWm~-~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~pi~f 384 (431)
T COG2895 308 PPAVADAFDADVVWMD-EEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDKPIAF 384 (431)
T ss_pred CcchhhhcceeEEEec-CCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCCceee
Confidence 9999999999999997 68999999999999999999999999999999998754 78899999999999999999999
Q ss_pred ecccccCCcceEEEEe--CCcEEEEEEEEeec
Q 005478 661 EEFSNCRALGRAFLRS--SGRTIAVGIVTRII 690 (694)
Q Consensus 661 e~~~~~~~lgrfiLr~--~g~Tvg~G~V~~v~ 690 (694)
++|.+++++|+|||.| .+.|||+|+|.+-+
T Consensus 385 d~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l 416 (431)
T COG2895 385 DAYAENRATGSFILIDRLTNGTVGAGMILASL 416 (431)
T ss_pred cccccCcccccEEEEEcCCCCceeceeeechh
Confidence 9999999999999965 67899999998754
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.5e-70 Score=615.43 Aligned_cols=421 Identities=29% Similarity=0.474 Sum_probs=381.2
Q ss_pred cCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCC--ccchhhccccchhhh
Q 005478 249 YKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEER 326 (694)
Q Consensus 249 ~~~e~~~~~~~~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~g--s~~~~~~~d~~~~Er 326 (694)
..+|.|+... +.+..++|+|+||+|||||||+++|++..+.|+.+.+.++++++...|+. +|.|+|.+|..++|+
T Consensus 13 ~~~~~~~~~~---~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr 89 (474)
T PRK05124 13 GGVEAYLHAQ---QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAER 89 (474)
T ss_pred hhHHHHHhhc---cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHh
Confidence 3445554322 34678999999999999999999999999999999999999999999874 899999999999999
Q ss_pred ccCeEEEEEEEEEecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCC
Q 005478 327 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (694)
Q Consensus 327 ~~GiTi~~~~~~~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip 406 (694)
++|+|++.++..|++++..++|||||||++|..++..++..+|++||||||..|+ ..||++|+.++..++++
T Consensus 90 ~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--------~~qt~~~~~l~~~lg~~ 161 (474)
T PRK05124 90 EQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--------LDQTRRHSFIATLLGIK 161 (474)
T ss_pred hcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cccchHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999884 57999999999999998
Q ss_pred cEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCC
Q 005478 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP 486 (694)
Q Consensus 407 ~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~ 486 (694)
++|||+||||++.+++++++++.+++..+++.+++. ..+++||+||++|+|+.++.. .++||+|++|+++|+.+++
T Consensus 162 ~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~---~~~wy~G~tLl~~L~~i~~ 237 (474)
T PRK05124 162 HLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSE---SMPWYSGPTLLEVLETVDI 237 (474)
T ss_pred ceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccc---cccccchhhHHHHHhhcCC
Confidence 899999999999877888888998888888777742 357899999999999987543 4799999999999999988
Q ss_pred CCCCCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEecccc
Q 005478 487 PPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGID 565 (694)
Q Consensus 487 ~~~~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid 565 (694)
+.+..+.||||+|+++++.. .... +.|+|.+|+|++||+|+++|.+..++|++|++++.+++.|.|||+|+|+|++
T Consensus 238 ~~~~~~~p~r~~I~~v~~~~~~~~g-~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~-- 314 (474)
T PRK05124 238 QRVVDAQPFRFPVQYVNRPNLDFRG-YAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED-- 314 (474)
T ss_pred CCCCCCCCceeeEEEEEecCCcccc-eEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--
Confidence 87888899999999998764 1122 5799999999999999999999999999999999999999999999999985
Q ss_pred ccccccCceeecCCCCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCC
Q 005478 566 VSRVMSGGVLCHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAK 645 (694)
Q Consensus 566 ~~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g 645 (694)
..++++|+|||+++.++..++.|+|++.||+ +.||++|+++.||+|+.+++|+|..|.+++|++||+. .+|++|++|
T Consensus 315 ~~~i~rG~VL~~~~~~~~~~~~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g 391 (474)
T PRK05124 315 EIDISRGDLLVAADEALQAVQHASADVVWMA-EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLN 391 (474)
T ss_pred ccccCCccEEECCCCCCccceEEEEEEEEeC-CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCC
Confidence 4679999999999888888999999999998 6899999999999999999999999999999999984 468899999
Q ss_pred CeEEEEEEeCceEEeecccccCCcceEEE--EeCCcEEEEEEEEeec
Q 005478 646 QSAIVEVALQEPVCVEEFSNCRALGRAFL--RSSGRTIAVGIVTRII 690 (694)
Q Consensus 646 ~~a~v~l~l~~pi~~e~~~~~~~lgrfiL--r~~g~Tvg~G~V~~v~ 690 (694)
+.|.|+|+|++|+|+++|+++++||||+| |+.++|||+|+|+++.
T Consensus 392 ~~a~v~l~~~~pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 392 GIGLVELTFDEPLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred CEEEEEEEECCeeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 99999999999999999999999999999 5689999999999876
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=2.3e-70 Score=604.79 Aligned_cols=401 Identities=31% Similarity=0.527 Sum_probs=371.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCC--ccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~g--s~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
++|+|+||+|||||||+++|++..+.++.+.+.++.+++...|+. +|.|+|.+|..++|+++|+|++.+...|++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 579999999999999999999999999999999999999998875 799999999999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
+++|+|||||++|.++|+.++..+|++||||||..|. ..|+++|+.++..++++++|||+||||++.+++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~--------~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV--------LEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------ccccHHHHHHHHHcCCCcEEEEEEecccccchHHH
Confidence 9999999999999999999999999999999999885 57999999999999998899999999999877788
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceEeEEe
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLK 504 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~~v~~ 504 (694)
++++.+++..+++.+++. .++++|+||++|+|+.++.. .++||+|++|+++|+.++++.+..+.||||+|+++++
T Consensus 153 ~~~i~~~~~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~ 227 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFR--DVTFIPLSALKGDNVVSRSE---SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNR 227 (406)
T ss_pred HHHHHHHHHHHHHHcCCC--CccEEEeecccCCCCccccc---CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEee
Confidence 888999998888888873 57899999999999987543 4899999999999999988888888999999999987
Q ss_pred cC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCCCcc
Q 005478 505 SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVA 583 (694)
Q Consensus 505 ~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~~~~ 583 (694)
.. .+.- ++|+|++|+|++||+|.++|.+..++|++|++++.++++|.|||+|+|+|++ ..++++|+|||+++.++.
T Consensus 228 ~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 228 PNLDFRG-YAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred cCCCcEE-EEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 65 2333 6899999999999999999999999999999999999999999999999984 467999999999988888
Q ss_pred eeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 005478 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 663 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~ 663 (694)
.++.|+|++.||++ .||++|++++||+|+.+++|+|..|...+|++||+. .++++|++|+.+.|+|+|++|+|+++|
T Consensus 305 ~~~~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~~~ 381 (406)
T TIGR02034 305 VADQFAATLVWMAE-EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFDPY 381 (406)
T ss_pred cceEEEEEEEEeCh-hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccCcc
Confidence 89999999999985 799999999999999999999999999999999984 467999999999999999999999999
Q ss_pred cccCCcceEEE--EeCCcEEEEEEE
Q 005478 664 SNCRALGRAFL--RSSGRTIAVGIV 686 (694)
Q Consensus 664 ~~~~~lgrfiL--r~~g~Tvg~G~V 686 (694)
+++++||||+| |++|+|||+|+|
T Consensus 382 ~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 382 AENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cCCCcceeEEEEECCCCCeEEEEeC
Confidence 99999999999 678999999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=7.6e-67 Score=606.70 Aligned_cols=409 Identities=28% Similarity=0.476 Sum_probs=375.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCC--CccchhhccccchhhhccCeEEEEEEEEEec
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~--gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~ 341 (694)
+..++|+|+||+|||||||+++|++..+.|+.+.+.++.+++...|+ ++|.|+|.+|..++|+++|+|++.++..|++
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 45689999999999999999999999999999999999999999997 8999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
++..++|+|||||++|.++|+.++..+|++|||||+..|. ..|+++|+.++..++++++|||+||||+++++
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 9999999999999999999999999999999999999874 57999999999999998899999999999877
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceEe
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~~ 501 (694)
+++++++..++..+++.++| ..++++|+||++|.|+.+... .++||.|++|+++|+.++++.+..++||||+|++
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~ 248 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSA---RMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQY 248 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCC--CCccEEEEecccCCCcccccc---CCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEE
Confidence 88888898999988888888 356889999999999987543 3799999999999999988777788999999999
Q ss_pred EEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCC
Q 005478 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (694)
Q Consensus 502 v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~ 580 (694)
+++.. .+.- ++|+|++|+|++||+|.++|.+..++|++|++++.++++|.|||+|+|+|++ ..++++|+|||+++.
T Consensus 249 v~~~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 249 VNRPNLDFRG-FAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADN 325 (632)
T ss_pred EEecCCCceE-EEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCC
Confidence 98864 2222 6899999999999999999999999999999999999999999999999984 457999999999988
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005478 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 660 (694)
Q Consensus 581 ~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~ 660 (694)
+++.++.|+|++.||++ .++.+|++++||+|+.+++|+|..|...+|.+|++. ++|++|++|+.+.|+|++++|+|+
T Consensus 326 ~~~~~~~f~a~i~~l~~-~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~pi~~ 402 (632)
T PRK05506 326 RPEVADQFDATVVWMAE-EPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDAPIAF 402 (632)
T ss_pred CCcceeEEEEEEEEecc-cccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECCEEee
Confidence 88889999999999985 578899999999999999999999999999998873 689999999999999999999999
Q ss_pred ecccccCCcceEEEEe--CCcEEEEEEEEeecc
Q 005478 661 EEFSNCRALGRAFLRS--SGRTIAVGIVTRIIE 691 (694)
Q Consensus 661 e~~~~~~~lgrfiLr~--~g~Tvg~G~V~~v~~ 691 (694)
++|+++++||||+||+ .|+|||+|+|+...+
T Consensus 403 e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~ 435 (632)
T PRK05506 403 DPYARNRTTGSFILIDRLTNATVGAGMIDFALR 435 (632)
T ss_pred eeccccccCceEEEEeccCCceEEEEEECcccc
Confidence 9999999999999954 899999999987653
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1e-63 Score=558.06 Aligned_cols=390 Identities=30% Similarity=0.456 Sum_probs=343.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec
Q 005478 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 262 ~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~ 341 (694)
..++++||+++||+|+|||||+++|++..+.+..+..++ ...+|...+|+++|+|++....+|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 356889999999999999999999999888775443221 12589999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
++..++|||||||++|.++|+.++..+|++||||||..|. .+|+++|+.++..+|+|++||++||||+++ .
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~--------~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~ 212 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP--------MPQTKEHILLAKQVGVPNMVVFLNKQDQVD-D 212 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEecccccC-H
Confidence 9999999999999999999999999999999999999884 689999999999999998899999999986 3
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCC--Ccccccccc-Ccchhhhhhcc-CCCCCCCCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD--DGRLLSWYK-GPCLLDAIDSL-RPPPREFSKPLLM 497 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~--~~~~~~wy~-G~~LL~~L~~l-~~~~~~~~~pl~~ 497 (694)
++.++.+.+++..+|+.++|....++|+|+||++|.|+..... .....+||+ +++|+++|+.+ ++|.+..++||+|
T Consensus 213 ~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~ 292 (478)
T PLN03126 213 EELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLL 292 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceee
Confidence 5567888889999999999977789999999999988742110 011248998 57899999775 4567778899999
Q ss_pred ceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC--eeeEEEeeeecccccceeccCCceeEEeccccccccccCce
Q 005478 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (694)
Q Consensus 498 ~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~V 574 (694)
+|+++|+++ .|+| ++|+|++|.|++||+|.++|.+ ..++|++|+.++.+++.|.|||+|+|.|++++..++++|+|
T Consensus 293 ~I~~vf~v~g~GtV-v~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~V 371 (478)
T PLN03126 293 AVEDVFSITGRGTV-ATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 371 (478)
T ss_pred EEEEEEEeCCceEE-EEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccE
Confidence 999999998 9998 8999999999999999999986 47899999999999999999999999999999999999999
Q ss_pred eecCCCCcceeeEEEEEEEEecCC-----CCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEE
Q 005478 575 LCHPDFPVAIATHLELKVLVLDFA-----PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (694)
Q Consensus 575 L~~~~~~~~~~~~f~a~v~vl~~~-----~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~ 649 (694)
|++++. +..++.|+|++.||+++ .||.+||++.||+|+.+++|+|..|....+ ++|++|++|+.+.
T Consensus 372 L~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a~ 442 (478)
T PLN03126 372 LAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRVK 442 (478)
T ss_pred EecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEEE
Confidence 999875 44578999999999975 699999999999999999999999965433 3578999999999
Q ss_pred EEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 650 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 650 v~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
|+|+|.+|+|+++ ++||+||+.|+|+|+|+|+++.+
T Consensus 443 v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~~ 478 (478)
T PLN03126 443 MVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSIIE 478 (478)
T ss_pred EEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEecC
Confidence 9999999999986 67999999999999999999864
No 13
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.3e-63 Score=544.74 Aligned_cols=381 Identities=31% Similarity=0.466 Sum_probs=336.1
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE
Q 005478 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (694)
Q Consensus 260 ~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~ 339 (694)
.++.+++++|+++||+|||||||+++|++... ..|++.+...+.+|.+.+|+++|+|++.....+
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~ 70 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEY 70 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEE
Confidence 34567899999999999999999999996321 234555544467999999999999999999999
Q ss_pred ecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005478 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 340 ~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~ 419 (694)
++++..++|+|||||++|.++++.++..+|++|||||+..+. ..|+++|+.++..+|+|.+|||+||||+++
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~--------~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP--------MPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC--------chhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 999999999999999999999999999999999999999874 579999999999999997667899999985
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccC-cchhhhhhc-cCCCCCCCCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLM 497 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G-~~LL~~L~~-l~~~~~~~~~pl~~ 497 (694)
.++.++.+..++..+++.+++....++++|+||++|.|... .++||.+ ++|+++|+. +++|.+..++||+|
T Consensus 143 -~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~------~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~ 215 (396)
T PRK12735 143 -DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDD------DEEWEAKILELMDAVDSYIPEPERAIDKPFLM 215 (396)
T ss_pred -hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCC------CCcccccHHHHHHHHHhcCCCCCccCCCCeEE
Confidence 34567777888999998888865568999999999999633 3789975 899999976 45677778899999
Q ss_pred ceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecC--CeeeEEEeeeecccccceeccCCceeEEeccccccccccCce
Q 005478 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (694)
Q Consensus 498 ~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~V 574 (694)
+|+++|+++ .|+| ++|+|++|+|++||+|+++|. +..++|++|+++++++++|.|||+|+|+|+|++..++++|+|
T Consensus 216 ~I~~~f~v~g~Gtv-v~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~v 294 (396)
T PRK12735 216 PIEDVFSISGRGTV-VTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQV 294 (396)
T ss_pred EEEEEEecCCceEE-EEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceE
Confidence 999999998 8998 999999999999999999997 468999999999999999999999999999999999999999
Q ss_pred eecCCCCcceeeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEE
Q 005478 575 LCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (694)
Q Consensus 575 L~~~~~~~~~~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~ 649 (694)
||+++. +..++.|+|++.+|++ +.||..||++.+|+|+.+++|+|.. .+++++|++|+.+.
T Consensus 295 l~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~ 360 (396)
T PRK12735 295 LAKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVK 360 (396)
T ss_pred EEcCCC-CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEE
Confidence 999875 4457999999999997 5799999999999999999999841 23567899999999
Q ss_pred EEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 650 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 650 v~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
|+|+|++|+|++++ |||+||+.|+|+|+|+|+++++
T Consensus 361 v~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~~ 396 (396)
T PRK12735 361 MTVELIAPIAMEEG------LRFAIREGGRTVGAGVVAKIIE 396 (396)
T ss_pred EEEEECceEEEeEC------CEEEEEcCCcEEEEEEEEEecC
Confidence 99999999999984 6999999999999999999863
No 14
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=6.1e-63 Score=546.41 Aligned_cols=391 Identities=29% Similarity=0.470 Sum_probs=343.2
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
...+++++|+++||+|||||||+++|++..+.++.... +.++ .+|.+.+|+++|+|++.....|+
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~~~-~~d~~~~e~~rg~T~~~~~~~~~ 71 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KKYD-EIDSAPEEKARGITINTAHVEYE 71 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------cccc-cccCChhhhcCCEeEEccEEEEc
Confidence 34568899999999999999999999988777653322 1122 58899999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
+++.+++|+|||||.+|.+++++++..+|+++|||||..|. ..|+++|+.++..+|+|++|+|+||||+++.
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~--------~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP--------MPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 99999999999999999999999999999999999999874 5799999999999999988899999999853
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCC--ccccccccC-cchhhhhhc-cCCCCCCCCCCcc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD--GRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLL 496 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~--~~~~~wy~G-~~LL~~L~~-l~~~~~~~~~pl~ 496 (694)
++.++.+.+++..+|+..+++...++++|+||++|.|+...... ....+||++ ++|+++|+. +++|.+..+.||+
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r 222 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFL 222 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEE
Confidence 45677788899999999998766789999999999998653321 012489985 899999977 4566677889999
Q ss_pred cceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecC--CeeeEEEeeeecccccceeccCCceeEEeccccccccccCc
Q 005478 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (694)
Q Consensus 497 ~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~ 573 (694)
|+|+++|+++ .|+| ++|+|++|+|++||.|.+.|. +..++|++|+++++++++|.|||+|+|+|++++..++++|+
T Consensus 223 ~~I~~v~~~~g~G~V-v~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~ 301 (409)
T CHL00071 223 MAIEDVFSITGRGTV-ATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGM 301 (409)
T ss_pred EEEEEEEEeCCCeEE-EEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeE
Confidence 9999999998 8998 999999999999999998874 46799999999999999999999999999999889999999
Q ss_pred eeecCCCCcceeeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeE
Q 005478 574 VLCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSA 648 (694)
Q Consensus 574 VL~~~~~~~~~~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a 648 (694)
||++++. +..++.|+|++.||++ +.||.+||++.+|+|+.+++|+|..|... . .++|++|++|+.+
T Consensus 302 vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~a 372 (409)
T CHL00071 302 VLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDRI 372 (409)
T ss_pred EEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCEE
Confidence 9999875 4568999999999997 57999999999999999999999988643 1 2568899999999
Q ss_pred EEEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 649 IVEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 649 ~v~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
.|+|+|.+|+|++++ |||+||+.|+|+|+|+|++++.
T Consensus 373 ~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 373 KMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred EEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 999999999999984 6999999999999999999863
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.8e-62 Score=540.29 Aligned_cols=380 Identities=32% Similarity=0.479 Sum_probs=333.8
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
...++++||+++||+|||||||+++|++... ..|++.....+.+|.+.+|+++|+|++.....+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~ 71 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE 71 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEc
Confidence 4457889999999999999999999996321 1222222222378999999999999999999998
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
+++..++|+|||||.+|..++..++..+|+++||||+..|. ..|+++|+.++..+++|.+||++||||+++
T Consensus 72 ~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~--------~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~- 142 (396)
T PRK00049 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP--------MPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC--------chHHHHHHHHHHHcCCCEEEEEEeecCCcc-
Confidence 88999999999999999999999999999999999999874 579999999999999996567999999985
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccC-cchhhhhhc-cCCCCCCCCCCcccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMP 498 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G-~~LL~~L~~-l~~~~~~~~~pl~~~ 498 (694)
.++.++.+..++..+++.+++.+..++++|+||++|.+.. ..++||.| ++|+++|+. +++|.+..++||+|+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~------~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD------DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCC------CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 3456777888899999998987677899999999997732 24799986 799999986 566777788999999
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecC--CeeeEEEeeeecccccceeccCCceeEEeccccccccccCcee
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL 575 (694)
|+++|+++ .|+| ++|+|.+|+|++||+|.++|. +..++|++|++++.++++|.|||+|+|+|++++..++++|+||
T Consensus 217 I~~~f~v~g~G~V-v~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl 295 (396)
T PRK00049 217 IEDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVL 295 (396)
T ss_pred EEEEEeeCCceEE-EEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEE
Confidence 99999998 9998 899999999999999999987 6789999999999999999999999999999998999999999
Q ss_pred ecCCCCcceeeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEE
Q 005478 576 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (694)
Q Consensus 576 ~~~~~~~~~~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v 650 (694)
|+++. +..++.|+|++.+|++ +++|+.||++.+|+|+.+++|+| .+ .++|++|++|+.+.|
T Consensus 296 ~~~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i-~l------------~~~~~~l~~g~~a~v 361 (396)
T PRK00049 296 AKPGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVI-EL------------PEGVEMVMPGDNVEM 361 (396)
T ss_pred ecCCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEE-Ee------------cCCCcccCCCCEEEE
Confidence 99875 4457999999999997 58999999999999999999998 22 235789999999999
Q ss_pred EEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 651 EVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 651 ~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
+|+|.+|+|++++ |||+||+.|+|+|+|+|+++++
T Consensus 362 ~i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~~ 396 (396)
T PRK00049 362 TVELIAPIAMEEG------LRFAIREGGRTVGAGVVTKIIE 396 (396)
T ss_pred EEEECceEEEeeC------CEEEEecCCcEEEEEEEEEecC
Confidence 9999999999984 6999999999999999999873
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.4e-62 Score=537.96 Aligned_cols=378 Identities=30% Similarity=0.468 Sum_probs=332.9
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
...++++||+++||+|||||||+++|++... ..|++.+...+.+|.+.+|+++|+|++.+...|+
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~ 71 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE 71 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEec
Confidence 3456789999999999999999999984211 1345555444579999999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
+++..++|||||||++|..+++.++..+|++|||||+..|. .+|+++|+.++..+|+|++|||+||||+++
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~--------~~~t~~~~~~~~~~g~~~~IvviNK~D~~~- 142 (394)
T PRK12736 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP--------MPQTREHILLARQVGVPYLVVFLNKVDLVD- 142 (394)
T ss_pred CCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------chhHHHHHHHHHHcCCCEEEEEEEecCCcc-
Confidence 88999999999999999999999999999999999999874 579999999999999998889999999974
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccC-cchhhhhhc-cCCCCCCCCCCcccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMP 498 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G-~~LL~~L~~-l~~~~~~~~~pl~~~ 498 (694)
+++.++.+.+++..+|+..++....++++|+||++|.+. ...||.+ .+|+++|.. +++|.+..++||+|+
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~--------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~ 214 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEG--------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMP 214 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccC--------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 345666777899999999998766789999999998642 1479965 789999965 566777788999999
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecC--CeeeEEEeeeecccccceeccCCceeEEeccccccccccCcee
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL 575 (694)
|+++|+++ .|+| ++|+|++|+|++||+|+++|. +..++|++|++++.++++|.|||+|+|+|++++..++++|+||
T Consensus 215 I~~~~~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 215 VEDVFTITGRGTV-VTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEEEEecCCcEEE-EEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 99999998 9998 999999999999999999998 6689999999999999999999999999999998999999999
Q ss_pred ecCCCCcceeeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEE
Q 005478 576 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (694)
Q Consensus 576 ~~~~~~~~~~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v 650 (694)
|+++.+ ..++.|+|++.+|++ ++||..||++.+|+|+.+++|+|.. .+++++|++|+.+.|
T Consensus 294 ~~~~~~-~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 359 (394)
T PRK12736 294 AKPGSI-KPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTI 359 (394)
T ss_pred ecCCCC-CcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEE
Confidence 998754 457899999999987 4799999999999999999999842 235678999999999
Q ss_pred EEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 651 EVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 651 ~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
+|+|.+|+|++++ +||+||+.|+|+|+|+|+++++
T Consensus 360 ~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~~ 394 (394)
T PRK12736 360 TVELIHPIAMEQG------LKFAIREGGRTVGAGTVTEILD 394 (394)
T ss_pred EEEECceEEEeeC------CEEEEecCCcEEEEEEEEEeeC
Confidence 9999999999985 5999999999999999999863
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=8.4e-62 Score=535.28 Aligned_cols=378 Identities=31% Similarity=0.471 Sum_probs=332.5
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
...+++++|+++||+|||||||+++|++.. ...|++.+...+.+|.+.+|+++|+|++.....|+
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~ 71 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE 71 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhH---------------HHhhcccccccccccCCHHHHhcCcceeeEEEEEc
Confidence 345678999999999999999999998532 12355555555789999999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
+++..++|||||||++|..+++.++..+|++|||||+..|. ..|+++|+.++..+++|++|||+||||++++
T Consensus 72 ~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~--------~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGP--------MPQTREHILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred CCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCEEEEEEEecccCCH
Confidence 88999999999999999999999999999999999999874 5799999999999999977789999999853
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccC-cchhhhhhcc-CCCCCCCCCCcccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDSL-RPPPREFSKPLLMP 498 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G-~~LL~~L~~l-~~~~~~~~~pl~~~ 498 (694)
++.++.+.+++..+++..++...+++++++||++|.+. ..+||.+ .+|+++|+.+ ++|.+..++||+|+
T Consensus 144 -~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g--------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~ 214 (394)
T TIGR00485 144 -EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG--------DAEWEAKILELMDAVDEYIPTPERETDKPFLMP 214 (394)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccccc--------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 44566677889999998888766689999999998643 2479974 8899999775 55677788999999
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecC--CeeeEEEeeeecccccceeccCCceeEEeccccccccccCcee
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL 575 (694)
|+++|+++ .|+| ++|+|++|+|++||+|.++|. +..++|++|++++.++++|.|||+|+|.|++++..++++|+||
T Consensus 215 V~~vf~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 215 IEDVFSITGRGTV-VTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEEEEeeCCceEE-EEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 99999999 9998 999999999999999999985 5689999999999999999999999999999988899999999
Q ss_pred ecCCCCcceeeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEE
Q 005478 576 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (694)
Q Consensus 576 ~~~~~~~~~~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v 650 (694)
|+++.+ ..++.|+|++.||++ ++||+.|+++.+|+|+.+++|+|..+ ++|++|++|+.+.|
T Consensus 294 ~~~~~~-~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v 359 (394)
T TIGR00485 294 AKPGSI-KPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-------------EGVEMVMPGDNVKM 359 (394)
T ss_pred ecCCCC-CcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-------------CCcceeCCCCEEEE
Confidence 998654 457999999999997 47999999999999999999999622 24788999999999
Q ss_pred EEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 651 EVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 651 ~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
+|+|++|+|++++ +||+||+.|+|+|+|+|+++++
T Consensus 360 ~~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~~ 394 (394)
T TIGR00485 360 TVELISPIALEQG------MRFAIREGGRTVGAGVVSKIIE 394 (394)
T ss_pred EEEECceEEEeEC------CEEEEecCCcEEEEEEEEEecC
Confidence 9999999999984 6999999999999999999863
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.8e-60 Score=529.46 Aligned_cols=377 Identities=31% Similarity=0.487 Sum_probs=326.2
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhh-ccccchhhhccCeEEEEEEEEE
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW-ALDESAEERERGITMTVAVAYF 339 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~-~~d~~~~Er~~GiTi~~~~~~~ 339 (694)
...++++||+++||+|||||||+++|++.. ...|+.. .++| .+|..++|+++|+|++.+...|
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~ 119 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVEY 119 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEEE
Confidence 446789999999999999999999997421 1123221 2222 6899999999999999999999
Q ss_pred ecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005478 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 340 ~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~ 419 (694)
++++.+++|+|||||.+|+.+|+.++..+|+++||||+..|. .+|+++|+.++..+|+|++|||+||||+++
T Consensus 120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~--------~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP--------MPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCC--------chhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 999999999999999999999999999999999999999874 579999999999999997788999999985
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeeccc---CCCcccCCCCccccccccCcchhhhhhc-cCCCCCCCCCCc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPL 495 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~---G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~~~~~~~~~pl 495 (694)
.++.++.+.+++..+++.++|....++++|+||++ |.|+. ..|..+.+|+++|+. ++.|.+..++||
T Consensus 192 -~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~--------~~~~~i~~Ll~~l~~~lp~p~r~~~~pf 262 (447)
T PLN03127 192 -DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE--------IGKNAILKLMDAVDEYIPEPVRVLDKPF 262 (447)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc--------cccchHHHHHHHHHHhCCCCCcccccce
Confidence 24456667778888888888866678999998874 44432 245566789999976 456777788999
Q ss_pred ccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecC----CeeeEEEeeeecccccceeccCCceeEEeccccccccc
Q 005478 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS----GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (694)
Q Consensus 496 ~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~----~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (694)
+|+|+++|+++ .|+| ++|+|++|.|++||+|.++|. +..++|++|++++.++++|.|||+|+|.|++++..+++
T Consensus 263 r~~I~~vf~v~g~GtV-vtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~ 341 (447)
T PLN03127 263 LMPIEDVFSIQGRGTV-ATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQ 341 (447)
T ss_pred EeeEEEEEEcCCceEE-EEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCC
Confidence 99999999998 9998 999999999999999999975 35799999999999999999999999999999999999
Q ss_pred cCceeecCCCCcceeeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCC
Q 005478 571 SGGVLCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAK 645 (694)
Q Consensus 571 rG~VL~~~~~~~~~~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g 645 (694)
+|+|||+++. +..+++|+|++.+|++ .+||..||++++|+|+.+++|+|.. .++|++|++|
T Consensus 342 rG~Vl~~~~~-~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~~g 407 (447)
T PLN03127 342 RGQVICKPGS-IKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVMPG 407 (447)
T ss_pred CccEEecCCC-CceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccCCC
Confidence 9999999864 5678999999999997 3799999999999999999999942 2357899999
Q ss_pred CeEEEEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 646 QSAIVEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 646 ~~a~v~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
+.+.|+|+|.+|+|++++ |||+||+.|+|||+|+|++|++
T Consensus 408 d~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~~ 447 (447)
T PLN03127 408 DNVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVLS 447 (447)
T ss_pred CEEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEecC
Confidence 999999999999999874 7999999999999999999863
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-58 Score=463.49 Aligned_cols=379 Identities=32% Similarity=0.500 Sum_probs=329.0
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE
Q 005478 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (694)
Q Consensus 260 ~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~ 339 (694)
....++++||+.+||+|+|||||..+|+..+.. .+...+.---..|..++|+++||||..++..+
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~---------------~~~~~~~~y~~id~aPeEk~rGITIntahvey 70 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAK---------------KGGAEAKAYDQIDNAPEEKARGITINTAHVEY 70 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHh---------------hccccccchhhhccCchHhhcCceeccceeEE
Confidence 445678999999999999999999999854321 11111111123577899999999999999999
Q ss_pred ecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005478 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 340 ~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~ 419 (694)
++.++++..+|+|||.||++||+.++.++|++||||+|.+| +++||+||+.++++.|+|++||++||+|+++
T Consensus 71 et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 99999999999999999999999999999999999999998 4799999999999999999999999999997
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccC-cchhhhhhc-cCCCCCCCCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLM 497 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G-~~LL~~L~~-l~~~~~~~~~pl~~ 497 (694)
+++.++.+..+++.+|...+|.....|++.-||+.--.-. .+|..- ..|+++++. ++.|.++.++||+|
T Consensus 143 -d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~--------~~~~~~i~eLm~avd~yip~Per~~dkPflm 213 (394)
T COG0050 143 -DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGD--------AKWEAKIEELMDAVDSYIPTPERDIDKPFLM 213 (394)
T ss_pred -cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCC--------cchHHHHHHHHHHHHhcCCCCCCcccccccc
Confidence 5788899999999999999999888999998887533211 224322 348888865 78899999999999
Q ss_pred ceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC--eeeEEEeeeecccccceeccCCceeEEeccccccccccCce
Q 005478 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (694)
Q Consensus 498 ~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~V 574 (694)
||.++|++. .|+| ++|||++|+|++|+.+.+.... ++.+|.+|++++...+++.||++|++.|+|+...+|.||+|
T Consensus 214 pvEdvfsIsgrgtv-vtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqv 292 (394)
T COG0050 214 PVEDVFSISGRGTV-VTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQV 292 (394)
T ss_pred cceeeEEEcCceeE-EEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceE
Confidence 999999999 9999 9999999999999999987655 46789999999999999999999999999999999999999
Q ss_pred eecCCCCcceeeEEEEEEEEec-----CCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEE
Q 005478 575 LCHPDFPVAIATHLELKVLVLD-----FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (694)
Q Consensus 575 L~~~~~~~~~~~~f~a~v~vl~-----~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~ 649 (694)
|+.|+. +....+|+|++++|. ..+|+..||++.|++.+..+++.+. + .+....+.||+.+.
T Consensus 293 Lakpgs-i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~-l------------~eg~emvmpgdnv~ 358 (394)
T COG0050 293 LAKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAIT-L------------PEGVEMVMPGDNVK 358 (394)
T ss_pred eecCCc-ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEe-c------------cCCcceecCCCceE
Confidence 999886 556889999999997 3489999999999999999988553 2 12346899999999
Q ss_pred EEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 650 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 650 v~l~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
+.++|.+||.+++.. ||.+|..|+|+|.|+|++|.+
T Consensus 359 ~~veLi~pia~e~G~------rFaIreGgrtvgaGvV~~i~~ 394 (394)
T COG0050 359 MVVELIHPIAMEEGL------RFAIREGGRTVGAGVVTKIIE 394 (394)
T ss_pred EEEEEeeeeecCCCC------EEEEEeCCeeeeeeEEeeecC
Confidence 999999999999976 999999999999999999863
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-58 Score=470.10 Aligned_cols=380 Identities=32% Similarity=0.479 Sum_probs=330.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec
Q 005478 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 262 ~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~ 341 (694)
..+++.||+.+||+|||||||..+++.-+... |...|.---..|..++|+.|||||..++..+++
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~---------------g~A~~~kydeID~APEEkaRGITIn~aHveYeT 114 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEK---------------GGAKFKKYDEIDKAPEEKARGITINAAHVEYET 114 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhc---------------cccccccHhhhhcChhhhhccceEeeeeeeeec
Confidence 45689999999999999999999998533222 222221112468899999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
..+++--+|+|||.||++||+.|+++.|++||||.|++|. ++||+||+.++++.|+++++|.+||.|+++ +
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~--------MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d 185 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP--------MPQTREHLLLARQVGVKHIVVFINKVDLVD-D 185 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC--------CcchHHHHHHHHHcCCceEEEEEecccccC-C
Confidence 9999999999999999999999999999999999999984 799999999999999999999999999996 4
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc-cCCCCCCCCCCcccceE
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLLMPIC 500 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~~~~~~~~~pl~~~I~ 500 (694)
++.++-+.-+++++|..+||+..++|+|.-||+.-.--..+ +.+. . .-..||+++++ +|.|.|+.++||.|||.
T Consensus 186 ~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~p-eig~-~---aI~kLldavDsyip~P~R~~~~pFl~pie 260 (449)
T KOG0460|consen 186 PEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQP-EIGL-E---AIEKLLDAVDSYIPTPERDLDKPFLLPIE 260 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCc-cccH-H---HHHHHHHHHhccCCCcccccCCCceeehh
Confidence 77888888999999999999999999999887742211110 0000 0 00238899976 89999999999999999
Q ss_pred eEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCe--eeEEEeeeecccccceeccCCceeEEeccccccccccCceeec
Q 005478 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE--VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCH 577 (694)
Q Consensus 501 ~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~--~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~ 577 (694)
++|.++ .|+| ++|+|++|+|++|+++.|...++ +.+|..|++++..+++|.|||++++-|+|+...+++|||||+.
T Consensus 261 ~vfsI~GRGTV-vtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~ 339 (449)
T KOG0460|consen 261 DVFSIPGRGTV-VTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAK 339 (449)
T ss_pred heeeecCCceE-EEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEec
Confidence 999999 9999 99999999999999999987664 6789999999999999999999999999999999999999999
Q ss_pred CCCCcceeeEEEEEEEEec-----CCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEE
Q 005478 578 PDFPVAIATHLELKVLVLD-----FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEV 652 (694)
Q Consensus 578 ~~~~~~~~~~f~a~v~vl~-----~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l 652 (694)
|+. ......|+|++++|. ..+|+..+|++.+|..+..++++|.-+. ..+.+.||+.+.+++
T Consensus 340 pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-------------~~~mvMPGe~~~~~~ 405 (449)
T KOG0460|consen 340 PGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-------------EKEMVMPGENVKVEV 405 (449)
T ss_pred CCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-------------hHhcccCCCCeEEEE
Confidence 997 777899999999997 4589999999999999999999996331 135799999999999
Q ss_pred EeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 005478 653 ALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 653 ~l~~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~ 691 (694)
.|.+|+++++.. ||.||+.|+|||.|+|+.+++
T Consensus 406 ~Li~pm~le~Gq------rFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 406 TLIRPMPLEKGQ------RFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred EEecccccCCCc------eeeEccCCeeeeeeeEeeeee
Confidence 999999999864 999999999999999999875
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.2e-53 Score=473.96 Aligned_cols=343 Identities=24% Similarity=0.342 Sum_probs=293.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-- 341 (694)
.+.++|+++||+|||||||+++|++. .+|.+.+|.++|+|+++++.++..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~----------------------------~~~r~~~E~~rGiTi~lGfa~~~~~~ 83 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGV----------------------------KTVRFKREKVRNITIKLGYANAKIYK 83 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCC----------------------------CcccchhhHHhCCchhcccccccccc
Confidence 46799999999999999999999931 356788999999999998876521
Q ss_pred -------------C------------------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccch
Q 005478 342 -------------K------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAK 390 (694)
Q Consensus 342 -------------~------------------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~ 390 (694)
. ...++|+|||||++|.++|+.++..+|++||||||.++. ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~~ 156 (460)
T PTZ00327 84 CPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------PQ 156 (460)
T ss_pred CcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------cc
Confidence 1 247999999999999999999999999999999999752 25
Q ss_pred hHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccc
Q 005478 391 GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLS 470 (694)
Q Consensus 391 ~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~ 470 (694)
+||++|+.++..+|++++|||+||||+++ .+++++..+++..+++.... ...++||+||++|+|+..
T Consensus 157 ~qT~ehl~i~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~~--------- 223 (460)
T PTZ00327 157 PQTSEHLAAVEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNIDV--------- 223 (460)
T ss_pred hhhHHHHHHHHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHHH---------
Confidence 79999999999999998999999999984 44555556666666654322 457899999999999965
Q ss_pred cccCcchhhhhh-ccCCCCCCCCCCcccceEeEEecC---------CCeEeeEEEEeeeeecCCCEEEEecCC-------
Q 005478 471 WYKGPCLLDAID-SLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSG------- 533 (694)
Q Consensus 471 wy~G~~LL~~L~-~l~~~~~~~~~pl~~~I~~v~~~~---------~G~V~v~GrV~sG~L~~Gd~v~i~P~~------- 533 (694)
|+++|. .+++|.+..+.||+|+|+++|.+. .|+| ++|+|.+|+|++||+|.++|++
T Consensus 224 ------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtV-v~G~v~~G~l~~Gd~v~i~P~~~~~~~~g 296 (460)
T PTZ00327 224 ------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGV-AGGSILQGVLKVGDEIEIRPGIISKDSGG 296 (460)
T ss_pred ------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEE-EEEEEeeceEecCCEEEEccCcccccccC
Confidence 999997 677777888899999999988764 4888 8999999999999999999975
Q ss_pred ------eeeEEEeeeecccccceeccCCceeEEec---cccccccccCceeecCCCCcceeeEEEEEEEEecCC------
Q 005478 534 ------EVGTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFA------ 598 (694)
Q Consensus 534 ------~~~~VksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~~~------ 598 (694)
..++|++||+++.++++|.|||+|+|+|+ +++..++.||+||++++.+++..+.|+|++.||.+.
T Consensus 297 ~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~ 376 (460)
T PTZ00327 297 EFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQ 376 (460)
T ss_pred ccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccccc
Confidence 35799999999999999999999999987 788888999999999988777788999999999863
Q ss_pred --------CCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcc
Q 005478 599 --------PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALG 670 (694)
Q Consensus 599 --------~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~~~~~~lg 670 (694)
.||+.|+++.||+|+.+++|+|..|.. + . .++|+|.+|+|+...+
T Consensus 377 ~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~----~----------------~-~~~l~l~~P~~~~~gd------ 429 (460)
T PTZ00327 377 DGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKD----D----------------G-IAKLELTTPVCTSVGE------ 429 (460)
T ss_pred ccccccCCcccCCCCEEEEEecccEEEEEEEEeCC----C----------------e-EEEEEECccEeccCCC------
Confidence 799999999999999999999987621 0 0 6778899999999876
Q ss_pred eEEEEeC----CcEEEEEEEEe
Q 005478 671 RAFLRSS----GRTIAVGIVTR 688 (694)
Q Consensus 671 rfiLr~~----g~Tvg~G~V~~ 688 (694)
||+||+. .+|||+|.|..
T Consensus 430 r~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 430 KIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEEEEeccCCCcEEEEEEEEcC
Confidence 9999853 48999999874
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=4.2e-51 Score=469.65 Aligned_cols=338 Identities=24% Similarity=0.368 Sum_probs=296.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-CCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-~~~~ 345 (694)
+.|+++||+|||||||+++|++. .+|...+|+++|+|++.++.++.. ++..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~----------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~ 52 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV----------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRV 52 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----------------------------CCccchhcccCCceEEeeeEEEecCCCcE
Confidence 35899999999999999999831 246778899999999999888866 4678
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhH
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~ 425 (694)
+.|||||||++|.++|+.++..+|++|||||+.+|. ++|+++|+.++..+|++++|||+||||+++ ++++
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~--------~~qT~ehl~il~~lgi~~iIVVlNKiDlv~--~~~~ 122 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGV--------MAQTREHLAILQLTGNPMLTVALTKADRVD--EARI 122 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEECCccCC--HHHH
Confidence 999999999999999999999999999999999874 689999999999999997889999999984 5677
Q ss_pred hHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceEeEEec
Q 005478 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKS 505 (694)
Q Consensus 426 ~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~~v~~~ 505 (694)
+.+.+++..+++..++. ..++|++||++|+|+.+ |+++|..++.+.+..+.||+|+|+++|.+
T Consensus 123 ~~v~~ei~~~l~~~~~~--~~~ii~VSA~tG~gI~~---------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 123 AEVRRQVKAVLREYGFA--EAKLFVTAATEGRGIDA---------------LREHLLQLPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred HHHHHHHHHHHHhcCCC--CCcEEEEeCCCCCCCHH---------------HHHHHHHhhccccCcCCCceEEEEEEecc
Confidence 77888888888777763 46789999999999965 89999887777666789999999999999
Q ss_pred C-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEecc-ccccccccCceeecCCCCcc
Q 005478 506 Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQG-IDVSRVMSGGVLCHPDFPVA 583 (694)
Q Consensus 506 ~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~g-id~~~i~rG~VL~~~~~~~~ 583 (694)
+ .|+| |+|+|.+|+|++||+|.+.|.+..++|++||+++.++++|.|||+|+|+|+| ++..+|++|+||+.++. +.
T Consensus 186 ~G~GtV-vtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~-~~ 263 (614)
T PRK10512 186 KGAGLV-VTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAP-PE 263 (614)
T ss_pred CCCeEE-EEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCC-Cc
Confidence 8 9999 9999999999999999999999999999999999999999999999999997 89999999999998753 34
Q ss_pred eeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 005478 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 663 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~ 663 (694)
.+..+ +.++....||..|+++.||+|+.++.|+|..| +.+.++|.|++|+++...
T Consensus 264 ~~~~~---~~~l~~~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~~g 318 (614)
T PRK10512 264 PFTRV---IVELQTHTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLADN 318 (614)
T ss_pred cceeE---EEEEcCCccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCcccccCC
Confidence 44444 34455568999999999999999999999865 135789999999999876
Q ss_pred cccCCcceEEEEe--CCcEEEEEEEEeeccc
Q 005478 664 SNCRALGRAFLRS--SGRTIAVGIVTRIIED 692 (694)
Q Consensus 664 ~~~~~lgrfiLr~--~g~Tvg~G~V~~v~~~ 692 (694)
+ |||||+ ..+|||+|.|+.+.++
T Consensus 319 d------r~ilr~~s~~~tigGg~Vld~~~~ 343 (614)
T PRK10512 319 D------RLVLRDISARNTLAGARVVMLNPP 343 (614)
T ss_pred C------EEEEEeCCCCEEEEEEEEcccCCc
Confidence 5 999998 5589999999987654
No 23
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=4.8e-50 Score=443.19 Aligned_cols=342 Identities=29% Similarity=0.444 Sum_probs=286.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+++++|+++||+|||||||+++|++ ..+|.+.+|+++|+|++.++..+.+.
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~----------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~~ 57 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTG----------------------------VWTDRHSEELKRGITIRLGYADATIR 57 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhC----------------------------eecccCHhHHhcCcEEEecccccccc
Confidence 45789999999999999999999962 13678889999999999876543321
Q ss_pred --------------------------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHH
Q 005478 343 --------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (694)
Q Consensus 343 --------------------------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~ 396 (694)
.+.++|||||||.+|..+++.++..+|++|+|||+.++. ...++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~~ 130 (411)
T PRK04000 58 KCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-------PQPQTKEH 130 (411)
T ss_pred cccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHHH
Confidence 268999999999999999999999999999999999863 13688999
Q ss_pred HHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcc
Q 005478 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPC 476 (694)
Q Consensus 397 l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~ 476 (694)
+.++..++++++|+|+||+|+++. +......+++..+++... ...++++++||++|+|+.+
T Consensus 131 l~~l~~~~i~~iiVVlNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~--------------- 191 (411)
T PRK04000 131 LMALDIIGIKNIVIVQNKIDLVSK--ERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDA--------------- 191 (411)
T ss_pred HHHHHHcCCCcEEEEEEeeccccc--hhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHH---------------
Confidence 999999999779999999999853 222223344444443321 1346899999999999965
Q ss_pred hhhhhhc-cCCCCCCCCCCcccceEeEEecC---------CCeEeeEEEEeeeeecCCCEEEEecCCe------------
Q 005478 477 LLDAIDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------ 534 (694)
Q Consensus 477 LL~~L~~-l~~~~~~~~~pl~~~I~~v~~~~---------~G~V~v~GrV~sG~L~~Gd~v~i~P~~~------------ 534 (694)
|++.|.. ++++.+..++||+|+|+++|.+. .|+| ++|+|.+|+|++||.|.++|.+.
T Consensus 192 L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~ 270 (411)
T PRK04000 192 LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPI 270 (411)
T ss_pred HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceE-EEEEEEeCEEecCCEEEEcCCcceecccccccccc
Confidence 8888865 67677777899999999999764 3557 89999999999999999999863
Q ss_pred eeEEEeeeecccccceeccCCceeEEec---cccccccccCceeecCCCCcceeeEEEEEEEEecC---------CCCcc
Q 005478 535 VGTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPIL 602 (694)
Q Consensus 535 ~~~VksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~~---------~~pi~ 602 (694)
.++|++|++++.++++|.|||+|+|+|+ +++..++++|+|||+++.+++.++.|+|++.||.+ +.||.
T Consensus 271 ~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~ 350 (411)
T PRK04000 271 TTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIK 350 (411)
T ss_pred eEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCC
Confidence 5799999999999999999999999996 67778899999999998888888999999999987 68999
Q ss_pred CCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEE--EeCC--
Q 005478 603 IGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFL--RSSG-- 678 (694)
Q Consensus 603 ~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~~~~~~lgrfiL--r~~g-- 678 (694)
+|+++.+|+|+.+++|+|..|. ++ .++|+|++|+|+.+.+ ||+| |.++
T Consensus 351 ~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g~------r~~~~~~~~~~~ 402 (411)
T PRK04000 351 TGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEGD------RVAISRRVGGRW 402 (411)
T ss_pred CCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCCC------EEEEEEecCCcE
Confidence 9999999999999999998762 11 5778899999999876 9999 6677
Q ss_pred cEEEEEEEE
Q 005478 679 RTIAVGIVT 687 (694)
Q Consensus 679 ~Tvg~G~V~ 687 (694)
|++|.|.|.
T Consensus 403 ~~~~~~~~~ 411 (411)
T PRK04000 403 RLIGYGIIK 411 (411)
T ss_pred EEEEEEEeC
Confidence 899999873
No 24
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=6.5e-50 Score=442.15 Aligned_cols=340 Identities=29% Similarity=0.460 Sum_probs=284.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-- 341 (694)
++.++|+++||+|||||||+++|++. .+|.+.+|+++|+|+.+++..+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~----------------------------~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe----------------------------ecccCHhHHHcCceeEeccccccccc
Confidence 46789999999999999999999731 257788999999999988765431
Q ss_pred ------------------------CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH
Q 005478 342 ------------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (694)
Q Consensus 342 ------------------------~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l 397 (694)
.+..++|||||||++|.++|+.++..+|++||||||.++. ...|+++|+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l 126 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHL 126 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHH
Confidence 1467999999999999999999999999999999999873 146999999
Q ss_pred HHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcch
Q 005478 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 477 (694)
Q Consensus 398 ~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~L 477 (694)
.++..++++++|||+||+|+++. +......+++..+++... ...++++|+||++|+|+.+ |
T Consensus 127 ~~l~~~gi~~iIVvvNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~---------------L 187 (406)
T TIGR03680 127 MALEIIGIKNIVIVQNKIDLVSK--EKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDA---------------L 187 (406)
T ss_pred HHHHHcCCCeEEEEEEccccCCH--HHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHH---------------H
Confidence 99999999889999999999852 222223344444544322 1346899999999999965 8
Q ss_pred hhhhhc-cCCCCCCCCCCcccceEeEEecC---------CCeEeeEEEEeeeeecCCCEEEEecCCe------------e
Q 005478 478 LDAIDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------V 535 (694)
Q Consensus 478 L~~L~~-l~~~~~~~~~pl~~~I~~v~~~~---------~G~V~v~GrV~sG~L~~Gd~v~i~P~~~------------~ 535 (694)
+++|.. ++.|.+..++||+|+|+++|.+. +|+| ++|+|.+|+|++||.|.++|++. .
T Consensus 188 ~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 188 LEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeE-EEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 898876 67677778899999999999664 3567 89999999999999999999852 4
Q ss_pred eEEEeeeecccccceeccCCceeEEec---cccccccccCceeecCCCCcceeeEEEEEEEEecC---------CCCccC
Q 005478 536 GTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPILI 603 (694)
Q Consensus 536 ~~VksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~~---------~~pi~~ 603 (694)
++|++|++++.++++|.|||+|+|+|+ +++..++++|+||++++.+++.+..|+|++.||.+ +.||++
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 68888999999999998877788999999999975 379999
Q ss_pred CCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEE--EeCC--c
Q 005478 604 GSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFL--RSSG--R 679 (694)
Q Consensus 604 G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~~~~~~lgrfiL--r~~g--~ 679 (694)
|+++.+|+|+.+++|+|..|.. ..++|+|.+|+|+...+ ||+| |.++ +
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~~----------------------~~~~l~l~~p~~~~~g~------r~~~~~~~~~~~~ 398 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSARK----------------------DEIEVKLKRPVCAEEGD------RVAISRRVGGRWR 398 (406)
T ss_pred CCEEEEEEccceEEEEEEEcCC----------------------cEEEEEECCcEEcCCCC------EEEEEEecCCceE
Confidence 9999999999999999986620 13778899999999876 9999 4445 8
Q ss_pred EEEEEEE
Q 005478 680 TIAVGIV 686 (694)
Q Consensus 680 Tvg~G~V 686 (694)
++|.|.|
T Consensus 399 ~~g~g~~ 405 (406)
T TIGR03680 399 LIGYGII 405 (406)
T ss_pred EEEEEEe
Confidence 9999987
No 25
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=9.8e-51 Score=420.72 Aligned_cols=405 Identities=27% Similarity=0.386 Sum_probs=327.7
Q ss_pred CccccccccccccccCCCccccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhh
Q 005478 218 NLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQ 297 (694)
Q Consensus 218 ~~~~~~~~l~l~~~~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~ 297 (694)
.+.++++-|+...+....+...++.-.-...+..+-. .+.+.+....++.|+++||+|||||||++.|+ +|..+
T Consensus 70 ~l~esievL~~la~evgA~i~~v~~~eg~~g~Vaev~-vrr~~~~~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~D--- 143 (527)
T COG5258 70 KLVESIEVLRELAREVGASIYIVRVHEGTDGYVAEVL-VRRKTEEAPEHVLVGVAGHVDHGKSTLVGVLV--TGRLD--- 143 (527)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEEEeccCcEEEEEE-EEecccCCCceEEEEEeccccCCcceEEEEEE--ecCCC---
Confidence 3677777666655543222111111111112222222 23445557789999999999999999999997 33332
Q ss_pred hhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC-----------------------CeEEEEEeCCCc
Q 005478 298 MHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-----------------------NYHVVVLDSPGH 354 (694)
Q Consensus 298 ~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-----------------------~~~v~liDtPGh 354 (694)
+|+| ....++|.+++|.++|.|.++++.-+... ++.+.|+||.||
T Consensus 144 ----------DG~G--~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGH 211 (527)
T COG5258 144 ----------DGDG--ATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGH 211 (527)
T ss_pred ----------CCCc--chhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCc
Confidence 2333 23456789999999999988877755322 356889999999
Q ss_pred cchHHHHHhhcc--cCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhh
Q 005478 355 KDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (694)
Q Consensus 355 ~~f~~~~i~~~~--~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l 432 (694)
+.|.+++++|+- ..|+.+|||.|++|. +..|+||+.++.++++| +|||+||+|+++ .+++..+.+++
T Consensus 212 EpwLrTtirGL~gqk~dYglLvVaAddG~--------~~~tkEHLgi~~a~~lP-viVvvTK~D~~~--ddr~~~v~~ei 280 (527)
T COG5258 212 EPWLRTTIRGLLGQKVDYGLLVVAADDGV--------TKMTKEHLGIALAMELP-VIVVVTKIDMVP--DDRFQGVVEEI 280 (527)
T ss_pred cHHHHHHHHHHhccccceEEEEEEccCCc--------chhhhHhhhhhhhhcCC-EEEEEEecccCc--HHHHHHHHHHH
Confidence 999999999985 489999999999984 67999999999999999 999999999984 78888888888
Q ss_pred ccchhccccc--------------------CCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCC-CC
Q 005478 433 GTFLRSCGFK--------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPR-EF 491 (694)
Q Consensus 433 ~~~l~~~g~~--------------------~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~-~~ 491 (694)
..+|+..+-- ..-+|+|.+|+.+|+|++- |.+.+..+|...+ ..
T Consensus 281 ~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl---------------L~e~f~~Lp~rr~~~d 345 (527)
T COG5258 281 SALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL---------------LDEFFLLLPKRRRWDD 345 (527)
T ss_pred HHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH---------------HHHHHHhCCcccccCC
Confidence 8887643311 1246889999999999853 4444555655423 55
Q ss_pred CCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC----eeeEEEeeeecccccceeccCCceeEEeccccc
Q 005478 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDV 566 (694)
Q Consensus 492 ~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~ 566 (694)
..||+|.|+++|.+. +|+| +.|.|.+|.|+.||+++++|.. ..++|+||++|+..+++|.||.+++++|+|+..
T Consensus 346 ~g~flmYId~iYsVtGVGtV-vsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~ 424 (527)
T COG5258 346 EGPFLMYIDKIYSVTGVGTV-VSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEK 424 (527)
T ss_pred CCCeEEEEEeeEEEeeeEEE-EeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCH
Confidence 779999999999999 9999 9999999999999999999976 379999999999999999999999999999999
Q ss_pred cccccCceeecCCCCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCC
Q 005478 567 SRVMSGGVLCHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQ 646 (694)
Q Consensus 567 ~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~ 646 (694)
+.+++||||+.+ .+|.+.++|+|++++|.||+.|..||.+++|+-++++++++.+| | ..+|++||
T Consensus 425 e~lerGMVl~~~-~~pkaVref~AeV~vl~HPT~I~aGye~v~H~etI~e~~~f~~i----d----------~~~L~~GD 489 (527)
T COG5258 425 EELERGMVLSAG-ADPKAVREFDAEVLVLRHPTTIRAGYEPVFHYETIREAVYFEEI----D----------KGFLMPGD 489 (527)
T ss_pred HHHhcceEecCC-CCchhhheecceEEEEeCCcEEecCceeeeEeeEeeheeEEEEc----c----------cccccCCC
Confidence 999999999987 66888999999999999999999999999999999999999877 3 25799999
Q ss_pred eEEEEEEeC-ceEEeecccccCCcceEEEEeCCcEEEEEEEEee
Q 005478 647 SAIVEVALQ-EPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRI 689 (694)
Q Consensus 647 ~a~v~l~l~-~pi~~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v 689 (694)
...++++|. +|-.+++.. +||+| +|++.|+|.|+++
T Consensus 490 ~g~vr~~fkyrP~~v~eGQ------~fvFR-eGrskgvG~v~~~ 526 (527)
T COG5258 490 RGVVRMRFKYRPHHVEEGQ------KFVFR-EGRSKGVGRVIRV 526 (527)
T ss_pred cceEEEEEEeCchhhccCc------EEEEe-cCCCccceEEecc
Confidence 999999985 999998843 88888 9999999999986
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.5e-47 Score=439.06 Aligned_cols=336 Identities=28% Similarity=0.416 Sum_probs=281.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++||+|||||||+++|++. .++...+|+.+|+|++..+..+++++..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~----------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI----------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc----------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 47999999999999999999842 13556778889999999999999988999
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
+|||||||++|.++|+.++.++|++|||||+++|. ++|+.+|+.++..+|+|++|||+||||+++ .++++
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~--------~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~--~~~~~ 122 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV--------MTQTGEHLAVLDLLGIPHTIVVITKADRVN--EEEIK 122 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEECCCCCC--HHHHH
Confidence 99999999999999999999999999999999874 579999999999999998999999999984 55666
Q ss_pred HHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceEeEEecC
Q 005478 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKSQ 506 (694)
Q Consensus 427 ~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~~v~~~~ 506 (694)
.+.+++..+++..++.. .++++++||++|+|+.++.. .|.+.+..+..+ ..+.||+|+|+++|.++
T Consensus 123 ~~~~ei~~~l~~~~~~~-~~~ii~vSA~tG~GI~eL~~-----------~L~~l~~~~~~~--~~~~p~r~~Id~~f~v~ 188 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLK-NAKIFKTSAKTGQGIGELKK-----------ELKNLLESLDIK--RIQKPLRMAIDRAFKVK 188 (581)
T ss_pred HHHHHHHHHHHHhCCCC-CCcEEEEeCCCCCCchhHHH-----------HHHHHHHhCCCc--CcCCCcEEEEEEEEecC
Confidence 67777888877766532 47899999999999976221 122223333322 25789999999999998
Q ss_pred -CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCCCccee
Q 005478 507 -HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIA 585 (694)
Q Consensus 507 -~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~~~~~~ 585 (694)
.|+| ++|+|.+|+|++||+|.++|.+..++|++||.+++++++|.|||+|+|+|+|++..+|++|.+++.+..+.
T Consensus 189 G~GtV-v~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~~--- 264 (581)
T TIGR00475 189 GAGTV-VTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDPK--- 264 (581)
T ss_pred CcEEE-EEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCCC---
Confidence 9999 99999999999999999999999999999999999999999999999999999999999998887764321
Q ss_pred eEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecccc
Q 005478 586 THLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSN 665 (694)
Q Consensus 586 ~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~~~ 665 (694)
..+...+.. ..||..|+++.+|+|+.++.|+|..+ |. ..+++.|.+|+++...+
T Consensus 265 ~~~~~~~~~---~~~l~~~~~~~~~~gt~~~~~~i~~l----~~------------------~~~~l~l~~P~~~~~gd- 318 (581)
T TIGR00475 265 LRVVVKFIA---EVPLLELQPYHIAHGMSVTTGKISLL----DK------------------GIALLTLDAPLILAKGD- 318 (581)
T ss_pred ceEEEEEEc---CCccCCCCeEEEEEeceEEEEEEEEc----cC------------------cEEEEEECCceecCCCC-
Confidence 223333222 36899999999999999999998754 21 16788899999998876
Q ss_pred cCCcceEEEEeC-CcEEEEEEEEee
Q 005478 666 CRALGRAFLRSS-GRTIAVGIVTRI 689 (694)
Q Consensus 666 ~~~lgrfiLr~~-g~Tvg~G~V~~v 689 (694)
|||||++ .+|+|+|.|+..
T Consensus 319 -----~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 319 -----KLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred -----EEEEEeCCCEEEeeeEEecC
Confidence 9999984 489999999876
No 27
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-46 Score=395.42 Aligned_cols=326 Identities=24% Similarity=0.342 Sum_probs=278.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
.|+..||+++|||||+.+|++ ...|..++|.++|+|+|+++.+++..++.+.
T Consensus 2 ii~t~GhidHgkT~L~~altg----------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTG----------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhcc----------------------------cccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 589999999999999999984 2467889999999999999999999999999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~ 427 (694)
|+|+|||++|+++|+.++...|+++||||+++|. +.||.||+.++..+|+++.|||+||+|+++ +++.++
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl--------~~qtgEhL~iLdllgi~~giivltk~D~~d--~~r~e~ 123 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGL--------MAQTGEHLLILDLLGIKNGIIVLTKADRVD--EARIEQ 123 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCc--------chhhHHHHHHHHhcCCCceEEEEecccccc--HHHHHH
Confidence 9999999999999999999999999999999884 789999999999999999999999999985 556665
Q ss_pred HHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccC-CCCCCCCCCcccceEeEEecC
Q 005478 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR-PPPREFSKPLLMPICDVLKSQ 506 (694)
Q Consensus 428 i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~-~~~~~~~~pl~~~I~~v~~~~ 506 (694)
..+++...+. + ++.+++++|+.+|+||.+ |-+.|..++ .+.++.+.||+++|+.+|.++
T Consensus 124 ~i~~Il~~l~---l--~~~~i~~~s~~~g~GI~~---------------Lk~~l~~L~~~~e~d~~~~fri~IDraFtVK 183 (447)
T COG3276 124 KIKQILADLS---L--ANAKIFKTSAKTGRGIEE---------------LKNELIDLLEEIERDEQKPFRIAIDRAFTVK 183 (447)
T ss_pred HHHHHHhhcc---c--ccccccccccccCCCHHH---------------HHHHHHHhhhhhhhccCCceEEEEeeEEEec
Confidence 6555555554 4 346779999999999977 666676555 467788999999999999999
Q ss_pred -CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCCCccee
Q 005478 507 -HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIA 585 (694)
Q Consensus 507 -~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~~~~~~ 585 (694)
.|+| |+|++.+|++++||++++.|.++.++|||||.+++++++|.||++|+|+|+|++.++|.||++|++++.. .++
T Consensus 184 GvGTV-VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~-~v~ 261 (447)
T COG3276 184 GVGTV-VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPL-EVT 261 (447)
T ss_pred cccEE-EEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCC-Ccc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999998754 667
Q ss_pred eEEEEEEEEec-CCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005478 586 THLELKVLVLD-FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 660 (694)
Q Consensus 586 ~~f~a~v~vl~-~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~ 660 (694)
.+|.+.+.|.. ...++.+++.+.+|+|...++|+|..+... ......+++..++...+.+++..+...
T Consensus 262 ~~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-------~~l~~~k~i~~~~~~~l~lr~~~a~~~ 330 (447)
T COG3276 262 TRLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKN-------AELNLVKPIALGDNDRLVLRDNSAVIK 330 (447)
T ss_pred eEEEEEEEeccccccccCCCceEEEEEeccccceEeeecccc-------ceeeeecccccccCceEEEEcccceee
Confidence 88998888874 568999999999999999999999866321 000112344555555555555554443
No 28
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=8.9e-47 Score=389.24 Aligned_cols=379 Identities=26% Similarity=0.375 Sum_probs=309.9
Q ss_pred cCcccccCCCCc-CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhc
Q 005478 249 YKPEKWMLPDKK-GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327 (694)
Q Consensus 249 ~~~e~~~~~~~~-~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~ 327 (694)
-..+.|+..... ....-.++|+++|.+++|||||++.|++. .+ .+|+|-.+ .-+.++++|.+
T Consensus 115 G~~~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHg--eL-------------DnGRG~AR--qkLFRHKHEiE 177 (641)
T KOG0463|consen 115 GGTEVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHG--EL-------------DNGRGAAR--QKLFRHKHEIE 177 (641)
T ss_pred CCeeEEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeec--cc-------------ccCccHHH--HHHhhhhhhcc
Confidence 335667654433 34566789999999999999999999953 22 23333322 23456788888
Q ss_pred cCeEEEEEEE--EEec-----------------------CCeEEEEEeCCCccchHHHHHhhccc--CCEEEEEEecCCC
Q 005478 328 RGITMTVAVA--YFDS-----------------------KNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVG 380 (694)
Q Consensus 328 ~GiTi~~~~~--~~~~-----------------------~~~~v~liDtPGh~~f~~~~i~~~~~--aD~aILVVDa~~g 380 (694)
.|.|..++-- -|+. ....++|||.+||++|.++++.++.. +|+.+|+|.|+.|
T Consensus 178 SGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG 257 (641)
T KOG0463|consen 178 SGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG 257 (641)
T ss_pred cCccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc
Confidence 8888765422 2211 12468999999999999999998875 9999999999998
Q ss_pred ccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccC-----------------
Q 005478 381 SFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD----------------- 443 (694)
Q Consensus 381 ~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~----------------- 443 (694)
+ .+.|+||+.++.+|.+| ++||++|+|++. ...+++..+.+..+++..|+..
T Consensus 258 I--------iGmTKEHLgLALaL~VP-VfvVVTKIDMCP--ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~N 326 (641)
T KOG0463|consen 258 I--------IGMTKEHLGLALALHVP-VFVVVTKIDMCP--ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVN 326 (641)
T ss_pred c--------eeccHHhhhhhhhhcCc-EEEEEEeeccCc--HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeecc
Confidence 6 47999999999999999 999999999995 4566777777777887766542
Q ss_pred ----CCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCC--CCCCCcccceEeEEecC-CCeEeeEEEE
Q 005478 444 ----ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPR--EFSKPLLMPICDVLKSQ-HGQVSACGKL 516 (694)
Q Consensus 444 ----~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~--~~~~pl~~~I~~v~~~~-~G~V~v~GrV 516 (694)
.-.|+|.+|..+|+|+. ||..+.++.++.+ ..+.|..|.|+++|.++ +|+| +.|++
T Consensus 327 F~Ser~CPIFQvSNVtG~NL~----------------LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTv-vSGT~ 389 (641)
T KOG0463|consen 327 FPSERVCPIFQVSNVTGTNLP----------------LLKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTV-VSGTL 389 (641)
T ss_pred CccccccceEEeccccCCChH----------------HHHHHHhhcCcccccccCCCcceeecceEecCCcceE-eecce
Confidence 23466777888888773 6666656555443 45679999999999999 9999 99999
Q ss_pred eeeeecCCCEEEEecCC----eeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCCCcceeeEEEEEE
Q 005478 517 EAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIATHLELKV 592 (694)
Q Consensus 517 ~sG~L~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~~~~~~~~f~a~v 592 (694)
.+|+|+.+|.++++|.. .+..||||++.+-++..+++||.+.++|+.|...++++|||+++++..|.++|.|+|+|
T Consensus 390 L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEI 469 (641)
T KOG0463|consen 390 LSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEI 469 (641)
T ss_pred eeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeE
Confidence 99999999999999975 37899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCc-eEEeecccccCCcce
Q 005478 593 LVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQE-PVCVEEFSNCRALGR 671 (694)
Q Consensus 593 ~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~-pi~~e~~~~~~~lgr 671 (694)
++|+|++.|.+.||.++|+|+++++|.|..+- .+||+.||.+.|+|+|.+ |.++.+ ..|
T Consensus 470 LVLHHPTTIsprYQAMvHcGSiRQTAtivsM~--------------kdcLRTGDka~V~FrFIkqPEYir~------gqr 529 (641)
T KOG0463|consen 470 LVLHHPTTISPRYQAMVHCGSIRQTATIVSMG--------------KDCLRTGDKAKVQFRFIKQPEYIRP------GQR 529 (641)
T ss_pred EEEecCCccCcchhheeeeccccceeeeeecC--------------hhhhhcCCcceEEEEEecCcceecC------Cce
Confidence 99999999999999999999999999998662 268999999999999854 655554 347
Q ss_pred EEEEeCCcEEEEEEEEeecccC
Q 005478 672 AFLRSSGRTIAVGIVTRIIEDQ 693 (694)
Q Consensus 672 fiLr~~g~Tvg~G~V~~v~~~~ 693 (694)
+++| +|||.|+|.|+++++.+
T Consensus 530 lVFR-EGRTKAVGti~~~lp~~ 550 (641)
T KOG0463|consen 530 LVFR-EGRTKAVGTISSVLPQE 550 (641)
T ss_pred EEee-cccceeeeeeccccccc
Confidence 7777 99999999999998753
No 29
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-45 Score=375.74 Aligned_cols=370 Identities=28% Similarity=0.389 Sum_probs=308.8
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE
Q 005478 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (694)
Q Consensus 260 ~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~ 339 (694)
..++.-.++||++|..|+|||||++.|+.. . -++|+|..+ ..+.++.+|.+.|.|..+....+
T Consensus 161 d~QqfievRvAVlGg~D~GKSTLlGVLTQg--e-------------LDnG~GrAR--ln~FRh~HEiqsGrTSsis~evl 223 (591)
T KOG1143|consen 161 DSQQFIEVRVAVLGGCDVGKSTLLGVLTQG--E-------------LDNGNGRAR--LNIFRHPHEIQSGRTSSISNEVL 223 (591)
T ss_pred CcccceEEEEEEecCcccCcceeeeeeecc--c-------------ccCCCCeee--eehhcchhhhccCcccccchhcc
Confidence 345567789999999999999999999842 1 124444443 45678889999998877654322
Q ss_pred --e-------------------cCCeEEEEEeCCCccchHHHHHhhccc--CCEEEEEEecCCCccccccccchhHHHHH
Q 005478 340 --D-------------------SKNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREH 396 (694)
Q Consensus 340 --~-------------------~~~~~v~liDtPGh~~f~~~~i~~~~~--aD~aILVVDa~~g~~e~~~~~~~~qt~e~ 396 (694)
+ .....++|+|.+||.+|.++++.++.. +|+|+|||+|..|+ ...|+||
T Consensus 224 GFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi--------~~tTrEH 295 (591)
T KOG1143|consen 224 GFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI--------TWTTREH 295 (591)
T ss_pred cccccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC--------ccccHHH
Confidence 1 123569999999999999999999876 89999999999986 4689999
Q ss_pred HHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhccccc---------------------CCCceEEEeeccc
Q 005478 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK---------------------DASLTWIPLSALE 455 (694)
Q Consensus 397 l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~---------------------~~~v~~IpvSA~~ 455 (694)
+.++.+|++| ++|+++|||+++ ...++.+.+++..++++.|+. +.-+|++.+|..+
T Consensus 296 Lgl~~AL~iP-fFvlvtK~Dl~~--~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVs 372 (591)
T KOG1143|consen 296 LGLIAALNIP-FFVLVTKMDLVD--RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVS 372 (591)
T ss_pred HHHHHHhCCC-eEEEEEeecccc--chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecC
Confidence 9999999999 999999999995 556777888888888877765 2456788899999
Q ss_pred CCCcccCCCCccccccccCcchhhhhhccCCCCC-------CCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEE
Q 005478 456 NQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPR-------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKV 527 (694)
Q Consensus 456 G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~-------~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v 527 (694)
|+|+. |+..+.++.+|.. ....|..|.|+++|.++ +|+| |.|.+.+|.++.|+.+
T Consensus 373 Gegl~----------------ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~V-VGG~Ls~G~l~Eg~~~ 435 (591)
T KOG1143|consen 373 GEGLR----------------LLRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQV-VGGMLSEGQLHEGADV 435 (591)
T ss_pred ccchh----------------HHHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCccccc-ccceeeeceeccCcee
Confidence 99984 4444433333321 23568889999999999 9999 9999999999999999
Q ss_pred EEecCC----eeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCCCCcceeeEEEEEEEEecCCCCccC
Q 005478 528 LVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFAPPILI 603 (694)
Q Consensus 528 ~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~~~~pi~~ 603 (694)
.++|.. .+++|-+|+++++++..++|||.+.|+|...|...+++||||..++..|+.+..|+|++++|.|.+.|..
T Consensus 436 ~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHaT~i~~ 515 (591)
T KOG1143|consen 436 LVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHATYICE 515 (591)
T ss_pred EeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhhHhhee
Confidence 999986 3899999999999999999999999999877888899999999999889999999999999999999999
Q ss_pred CCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEe-CceEEeecccccCCcceEEEEeCCcEEE
Q 005478 604 GSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVAL-QEPVCVEEFSNCRALGRAFLRSSGRTIA 682 (694)
Q Consensus 604 G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l-~~pi~~e~~~~~~~lgrfiLr~~g~Tvg 682 (694)
|+|.++|+|+++++|.|.+|.. .++|++|++|.|.|.| .+|.++.+ |.-||+++|.|.|
T Consensus 516 GFQ~TVhiGsvrqTAvi~~I~~-------------~d~lrtg~~AvV~f~F~~hPEyir~-------G~~ilfReG~tKG 575 (591)
T KOG1143|consen 516 GFQATVHIGSVRQTAVITHIDD-------------ADCLRTGKWAVVKFCFAYHPEYIRE-------GSPILFREGKTKG 575 (591)
T ss_pred cceEEEEEcceeeeeeeeeecc-------------cccccCCceEEEEEEecCCchhccC-------CCeeeeecccccc
Confidence 9999999999999999998842 3689999999999997 56776665 3445555999999
Q ss_pred EEEEEeecccCC
Q 005478 683 VGIVTRIIEDQQ 694 (694)
Q Consensus 683 ~G~V~~v~~~~~ 694 (694)
+|.|++|.+-+|
T Consensus 576 iG~Vt~Vfp~t~ 587 (591)
T KOG1143|consen 576 IGEVTKVFPCTQ 587 (591)
T ss_pred cceEEEEEeccc
Confidence 999999987654
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-40 Score=336.24 Aligned_cols=341 Identities=28% Similarity=0.413 Sum_probs=288.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-- 341 (694)
.+.+||+++||++||||||+.+|++ ..+|.+.+|.+||+||.+++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG----------------------------vwT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG----------------------------VWTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc----------------------------eeeechhHHHhcCcEEEeccccCceEe
Confidence 4679999999999999999999984 3578999999999999988763211
Q ss_pred ------------------C------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH
Q 005478 342 ------------------K------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (694)
Q Consensus 342 ------------------~------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l 397 (694)
. -+++.|+|+|||+-++.+|++|++..|+|||||+|++.. +++||+||+
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl 132 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHL 132 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHH
Confidence 0 157889999999999999999999999999999999875 679999999
Q ss_pred HHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcch
Q 005478 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 477 (694)
Q Consensus 398 ~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~L 477 (694)
..+..+|++++|||-||+|++. .++..+-.+++.+|++..-. .+.|+||+||..+.||+. |
T Consensus 133 ~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk~FvkGt~A--e~aPIIPiSA~~~~NIDa---------------l 193 (415)
T COG5257 133 MALEIIGIKNIIIVQNKIDLVS--RERALENYEQIKEFVKGTVA--ENAPIIPISAQHKANIDA---------------L 193 (415)
T ss_pred HHHhhhccceEEEEecccceec--HHHHHHHHHHHHHHhccccc--CCCceeeehhhhccCHHH---------------H
Confidence 9999999999999999999994 66666666777888875543 457899999999999965 9
Q ss_pred hhhh-hccCCCCCCCCCCcccceEeEEecC---------CCeEeeEEEEeeeeecCCCEEEEecCCe------------e
Q 005478 478 LDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------V 535 (694)
Q Consensus 478 L~~L-~~l~~~~~~~~~pl~~~I~~v~~~~---------~G~V~v~GrV~sG~L~~Gd~v~i~P~~~------------~ 535 (694)
+++| ..++.|.++.++|.+|.|.+.|.++ .|.| +.|.+.+|.|++||+|.|.|.-. .
T Consensus 194 ~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGV-iGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 194 IEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGV-IGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCce-ecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 9999 5689999999999999999988764 5778 89999999999999999999742 3
Q ss_pred eEEEeeeecccccceeccCCceeEEecccc----ccccccCceeecCCCCcceeeEEEEEEEEec---------CCCCcc
Q 005478 536 GTVHSIERDSQSCSVARAGDNIAVSLQGID----VSRVMSGGVLCHPDFPVAIATHLELKVLVLD---------FAPPIL 602 (694)
Q Consensus 536 ~~VksI~~~~~~v~~A~aGd~V~l~L~gid----~~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~---------~~~pi~ 602 (694)
.+|.||+.....+++|++|-.|++.- .+| ..+-..|.|+..++..|++...|+.+..+|. .-.||+
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT-~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik 351 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGT-KLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIK 351 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEec-ccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCccccccccccc
Confidence 68999999999999999999999974 333 3456678888999998999999999999986 125999
Q ss_pred CCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEE-Ee---CC
Q 005478 603 IGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFL-RS---SG 678 (694)
Q Consensus 603 ~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~~~~~~lgrfiL-r~---~g 678 (694)
.|..++|.+|+....+.|+.... ..+++.|.+|+|.+... |+.| |+ ..
T Consensus 352 ~~E~Lml~VGtatT~GvV~~~k~----------------------d~~ev~Lk~Pvcae~g~------rvaisRri~~rW 403 (415)
T COG5257 352 TNEVLMLNVGTATTVGVVTSAKK----------------------DEIEVKLKRPVCAEIGE------RVAISRRIGNRW 403 (415)
T ss_pred CCCeEEEEeecceeEEEEEEecC----------------------ceEEEEeccceecCCCC------EEEEEeeecceE
Confidence 99999999999998888876521 25678888999999865 6666 33 24
Q ss_pred cEEEEEEEEe
Q 005478 679 RTIAVGIVTR 688 (694)
Q Consensus 679 ~Tvg~G~V~~ 688 (694)
|.||+|.|..
T Consensus 404 RLIG~G~ik~ 413 (415)
T COG5257 404 RLIGYGTIKE 413 (415)
T ss_pred EEEeEEEEec
Confidence 8999999874
No 31
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-40 Score=350.12 Aligned_cols=369 Identities=37% Similarity=0.662 Sum_probs=328.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+.+++|+++||+++||||+.+ +.++.++.+.++++++++.+.++|+|.|+|.+|....|+++|+||+.....|.+.
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccce
Confidence 4578999999999999999998 7789999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc--c
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--Y 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~--~ 420 (694)
.+.++++|.|||.+|.++|+.+..+||.++|+|.+..|.||++... .+|++||+.++..||+.++|+.+||||... +
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagisk-ngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccc-cchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 9999999999999999999999999999999999999999999987 489999999999999999999999999765 6
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCCCCCCcccceE
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~~~~pl~~~I~ 500 (694)
++.++.++.+..+...+..++++.. . ..
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~~~-------------------------------~---------------------~~ 187 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNPAA-------------------------------V---------------------LQ 187 (391)
T ss_pred cccchhhhheeeeeeeeccccCChh-------------------------------h---------------------hc
Confidence 6677777766555555444432110 0 22
Q ss_pred eEEecCCCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCceeecCC-
Q 005478 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD- 579 (694)
Q Consensus 501 ~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~- 579 (694)
+++... .+ | +..|.++.++.+...|.....++++..+++..-..+.+|++|++...++...++++|+|+.+..
T Consensus 188 ~~~~~~--g~---~-~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 188 DVYKIG--GI---G-VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred cceeec--ce---e-eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 444443 11 2 7888899999999888888889999999988777999999999999999999999999998754
Q ss_pred CCcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 005478 580 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 659 (694)
Q Consensus 580 ~~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~ 659 (694)
.|+.-...|++++.+|.|+..|..||.+.|-+|+.+++|++.+|..++|..+|+.+...|+++++++.+.+.+.+.+|+|
T Consensus 262 ~p~~~~~g~t~qviilnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ 341 (391)
T KOG0052|consen 262 DPPVEAAGFTAQVIILNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLC 341 (391)
T ss_pred CCccccccceeeEEEecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccc
Confidence 45556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEEEeecccC
Q 005478 660 VEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQ 693 (694)
Q Consensus 660 ~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~~~~ 693 (694)
++.|.+++.||||.+|+...|+|+|+|..+....
T Consensus 342 ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~ 375 (391)
T KOG0052|consen 342 VESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKD 375 (391)
T ss_pred cccccccccccchhhhhhhccccccceeeeeecc
Confidence 9999999999999999999999999999887543
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.4e-36 Score=347.95 Aligned_cols=278 Identities=26% Similarity=0.383 Sum_probs=229.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.||+|+||+|||||||+++|++..+.+...... -.+.+|..++|+++|+|+......+.++++.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v---------------~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAV---------------AERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccc---------------eeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 589999999999999999999988877543210 02579999999999999999999999999999
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
+|||||||.+|...+.+++..+|++||||||..|. ..|+++++..+..+++| +|||+||||+.. .+++
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~--------~~qT~~~l~~a~~~~ip-~IVviNKiD~~~---a~~~ 134 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP--------MPQTRFVLKKALELGLK-PIVVINKIDRPS---ARPD 134 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------cHHHHHHHHHHHHCCCC-EEEEEECCCCCC---cCHH
Confidence 99999999999999999999999999999999874 57999999999999999 799999999864 3455
Q ss_pred HHHHhhccchhcccccCC--CceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCCCCCCCcccceEeEE
Q 005478 427 SIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVL 503 (694)
Q Consensus 427 ~i~~~l~~~l~~~g~~~~--~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~~I~~v~ 503 (694)
++.+++..++..++.... .++++++||++|.+....... . ..-..||+.| +.+|+|..+.+.||+++|++++
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~----~-~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDP----S-DNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCccc----c-cCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 566677777765555432 468999999999865432110 0 0012477776 5677776777899999999999
Q ss_pred ecC-CCeEeeEEEEeeeeecCCCEEEEecCCe---eeEEEeeeec----ccccceeccCCceeEEeccccccccccCcee
Q 005478 504 KSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (694)
Q Consensus 504 ~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~---~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL 575 (694)
..+ .|++ ++|||.+|+|++||.|+++|.+. ..+|++|+.. +.+++.|.|||+|+|. |+ .++.+|++|
T Consensus 210 ~d~~~Grv-~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl 284 (594)
T TIGR01394 210 YDEYLGRI-AIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETI 284 (594)
T ss_pred eeCCCceE-EEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEE
Confidence 998 9999 89999999999999999999742 5789999874 6789999999999886 65 468899999
Q ss_pred ecCCCC
Q 005478 576 CHPDFP 581 (694)
Q Consensus 576 ~~~~~~ 581 (694)
|+++.+
T Consensus 285 ~~~~~~ 290 (594)
T TIGR01394 285 ADPEVP 290 (594)
T ss_pred eCCCcc
Confidence 987654
No 33
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-35 Score=299.45 Aligned_cols=347 Identities=25% Similarity=0.364 Sum_probs=274.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec---
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~--- 341 (694)
..+||+++||+|+|||||..+|..... ....|.++..++||+|.|+++..+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~S------------------------TaAFDk~pqS~eRgiTLDLGFS~~~v~~p 61 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGS------------------------TAAFDKHPQSTERGITLDLGFSTMTVLSP 61 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhcc------------------------chhhccCCcccccceeEeecceeeecccc
Confidence 358999999999999999999973211 13468888899999999999877643
Q ss_pred ------CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 342 ------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 342 ------~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
+..+++|+|+|||..+++..+.++...|+.|||||+..|. +.|+.|++.+...+--+ +|||+||+
T Consensus 62 arLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~--------QtQtAEcLiig~~~c~k-lvvvinki 132 (522)
T KOG0461|consen 62 ARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK--------QTQTAECLIIGELLCKK-LVVVINKI 132 (522)
T ss_pred cccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc--------ccccchhhhhhhhhccc-eEEEEecc
Confidence 3456899999999999999999999999999999999985 68999999777666555 89999999
Q ss_pred cccccc--hhhHhHHHHhhccchhcccccCCCceEEEeecccC----CCcccCCCCccccccccCcchhhhhh-ccCCCC
Q 005478 416 DAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN----QNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPP 488 (694)
Q Consensus 416 Dlv~~~--~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G----~nI~e~~~~~~~~~wy~G~~LL~~L~-~l~~~~ 488 (694)
|..... ...+++....++.-|+..+|.. +.|++++||..| ++|.+ |.++|. .+-.|.
T Consensus 133 d~lpE~qr~ski~k~~kk~~KtLe~t~f~g-~~PI~~vsa~~G~~~~~~i~e---------------L~e~l~s~if~P~ 196 (522)
T KOG0461|consen 133 DVLPENQRASKIEKSAKKVRKTLESTGFDG-NSPIVEVSAADGYFKEEMIQE---------------LKEALESRIFEPK 196 (522)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhcCcCC-CCceeEEecCCCccchhHHHH---------------HHHHHHHhhcCCC
Confidence 987532 2346777888889999999864 689999999999 55543 777774 567789
Q ss_pred CCCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEecccccc
Q 005478 489 REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVS 567 (694)
Q Consensus 489 ~~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~ 567 (694)
|+...||.|.|+.+|.++ .|+| .+|+|.+|.|+.|+.|.+...+..-+||+||++++++..|.+|+++++++...|..
T Consensus 197 Rd~~gpflm~vDHCF~IKGQGTV-~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~k 275 (522)
T KOG0461|consen 197 RDEEGPFLMAVDHCFAIKGQGTV-LTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEK 275 (522)
T ss_pred cCCCCCeEEEeeeeEEeccCceE-EeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHH
Confidence 999999999999999999 9999 89999999999999999988888899999999999999999999999999988888
Q ss_pred ccccCceeecCCCCcceeeEEEEEEEEe-cCCCCccCCCeeeEEEeeeeEEEEEEEEEe--------eeccc--cCcccc
Q 005478 568 RVMSGGVLCHPDFPVAIATHLELKVLVL-DFAPPILIGSQLECHIHHAKEAARIVKITS--------LLDTK--TGKVTK 636 (694)
Q Consensus 568 ~i~rG~VL~~~~~~~~~~~~f~a~v~vl-~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~--------~ld~~--tg~~~k 636 (694)
.+.|| +++.|+..-+ ....-+.+--+ ....+|..-..+.+-+|+.+++|+++-+.. .+|++ -++ ..
T Consensus 276 lleRg-i~~~pg~Lk~-~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E-~d 352 (522)
T KOG0461|consen 276 LLERG-ICGPPGTLKS-TKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGE-FD 352 (522)
T ss_pred HHhcc-ccCCCcccce-eeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccc-cc
Confidence 88888 4556655322 11111111100 024567666678888889999999886651 11110 011 12
Q ss_pred cCCcccCCCCeEEEEEEeCceEEeeccc
Q 005478 637 KSPRCLTAKQSAIVEVALQEPVCVEEFS 664 (694)
Q Consensus 637 ~~p~~L~~g~~a~v~l~l~~pi~~e~~~ 664 (694)
--|..+.+.+...+-|.+++||..++|+
T Consensus 353 ~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 353 MLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred cChhhcCCchheeeeeeecccccCcccc
Confidence 2466788888889999999999999876
No 34
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=7.9e-35 Score=296.25 Aligned_cols=216 Identities=55% Similarity=0.989 Sum_probs=193.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+++||+|||||||+++|++..+.+....+.++.+++...|++++.|+|.+|...+|+++|+|++.....|.+.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999999999999988888888888889999999999999999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc--ccchhhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QYSKDRF 425 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv--~~~~e~~ 425 (694)
|||||||.+|...++.++..+|++|+|||+..+.++.++.. ..++.+++.++..++++++|||+||||+. .+++..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEK-GGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcccccccc-ccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 99999999999999999999999999999998765544432 46888999888889987799999999998 3556778
Q ss_pred hHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCC
Q 005478 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (694)
Q Consensus 426 ~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~ 487 (694)
+.+.+++..+++.+++....++++|+||++|+|+.++. ..++||+|++|+++|+.+.++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~---~~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKS---ENMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCC---CCCCCccCCcHHHHHhCCCCC
Confidence 88999998888888887667899999999999998754 358999999999999988654
No 35
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.6e-34 Score=326.93 Aligned_cols=278 Identities=26% Similarity=0.382 Sum_probs=226.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
...||+|+||+|||||||+++|++..+.+...... -.+.+|...+|+++|+|+......+.+++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---------------QERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---------------ceeeeccccccccCceEEEEEEEEEecCCE
Confidence 46789999999999999999999877776543210 026899999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.++|||||||.+|...+..++..+|++|||||+..|. ..|++.++..+..+++| +|||+||||+.. .+
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~--------~~qt~~~l~~a~~~gip-~IVviNKiD~~~---a~ 136 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP--------MPQTRFVTKKAFAYGLK-PIVVINKVDRPG---AR 136 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc--------cHHHHHHHHHHHHcCCC-EEEEEECcCCCC---Cc
Confidence 9999999999999999999999999999999999874 57999999999999999 689999999874 34
Q ss_pred HhHHHHhhccchhcccccC--CCceEEEeecccCCCcccCCCC-ccccccccCcchhhhh-hccCCCCCCCCCCcccceE
Q 005478 425 FDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDD-GRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~--~~v~~IpvSA~~G~nI~e~~~~-~~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~~I~ 500 (694)
++.+.+++..++..++... ..+|++++||++|.|..+.... ..+ ..||++| +.+|+|.++.+.||+++|+
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i------~~Lld~Ii~~iP~P~~~~~~Pl~~~V~ 210 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDM------TPLYQAIVDHVPAPDVDLDGPFQMQIS 210 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccch------HHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 5555666666665444322 2478999999999975432110 001 2366776 5678787777899999999
Q ss_pred eEEecC-CCeEeeEEEEeeeeecCCCEEEEecC-Ce--eeEEEeeeec----ccccceeccCCceeEEeccccccccccC
Q 005478 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS-GE--VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (694)
Q Consensus 501 ~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~-~~--~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~rG 572 (694)
+++..+ .|++ ++|||.+|+|++||.|++.+. +. ..+|.+|... +.++++|.|||+|+|. |+ .++..|
T Consensus 211 k~~~d~~~G~i-~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~G 285 (607)
T PRK10218 211 QLDYNSYVGVI-GIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT--GL--GELNIS 285 (607)
T ss_pred eeEecCCCcEE-EEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE--Cc--cccccC
Confidence 999988 9999 899999999999999999887 43 5678888654 6789999999999976 54 457789
Q ss_pred ceeecCCC
Q 005478 573 GVLCHPDF 580 (694)
Q Consensus 573 ~VL~~~~~ 580 (694)
++||+++.
T Consensus 286 dTl~~~~~ 293 (607)
T PRK10218 286 DTVCDTQN 293 (607)
T ss_pred cEEecCCC
Confidence 99998764
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=6e-34 Score=327.07 Aligned_cols=266 Identities=29% Similarity=0.440 Sum_probs=219.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC---
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--- 342 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~--- 342 (694)
..||+|+||+|||||||+++|++..+.++.+.+. .+.+|..++|+++|+|+......+.+.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~----------------~~~~D~~~~ErerGiTi~~~~v~~~~~~~~ 66 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR----------------EQVLDSMDLERERGITIKAQAVRLNYKAKD 66 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc----------------ccccCCChHHHhcCCCeeeeEEEEEEEcCC
Confidence 5789999999999999999999988887654221 356889999999999999877766542
Q ss_pred --CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 343 --~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
.+.++|||||||.+|...+..++..+|++|||+|++++. ..|+.+++..+...++| +|+|+||+|+...
T Consensus 67 g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~--------~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 67 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI--------EAQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC--------CHhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 378999999999999999999999999999999999874 56888888888788988 8999999998753
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCCCCCCCcccce
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPI 499 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~~I 499 (694)
+. +.+.+++...+ ++. ...++++||++|.|+.+ |+++| ..+++|..+.+.||++.|
T Consensus 138 ~~---~~~~~el~~~l---g~~--~~~vi~vSAktG~GI~~---------------Lle~I~~~lp~p~~~~~~pl~~~V 194 (595)
T TIGR01393 138 DP---ERVKKEIEEVI---GLD--ASEAILASAKTGIGIEE---------------ILEAIVKRVPPPKGDPDAPLKALI 194 (595)
T ss_pred CH---HHHHHHHHHHh---CCC--cceEEEeeccCCCCHHH---------------HHHHHHHhCCCCCCCCCCCeEEEE
Confidence 32 22333443332 332 12479999999999976 88887 557777777889999999
Q ss_pred EeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecc---cccceeccCCceeEEeccc-cccccccCce
Q 005478 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS---QSCSVARAGDNIAVSLQGI-DVSRVMSGGV 574 (694)
Q Consensus 500 ~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~---~~v~~A~aGd~V~l~L~gi-d~~~i~rG~V 574 (694)
++++..+ .|.+ ++|||.+|+|++||+|+++|.+...+|.+|.... .++++|.||| |++.+.|+ +..+++.||+
T Consensus 195 ~~~~~d~~~G~v-~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 195 FDSHYDNYRGVV-ALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEeCCCcEE-EEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCE
Confidence 9999998 9998 8999999999999999999999989999998765 6789999999 66666676 4567999999
Q ss_pred eecCCCC
Q 005478 575 LCHPDFP 581 (694)
Q Consensus 575 L~~~~~~ 581 (694)
|++.+.+
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9986644
No 37
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=5.2e-34 Score=327.89 Aligned_cols=267 Identities=28% Similarity=0.428 Sum_probs=220.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-- 342 (694)
...||+|+||+|||||||+++|++..+.+..+.+. .+.+|..++|+++|+|+......+.+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~----------------~~~lD~~~~ErerGiTi~~~~v~~~~~~~ 69 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK----------------AQVLDSMDLERERGITIKAQAVRLNYKAK 69 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc----------------cccccCchHHhhcCCcccccEEEEEEEcc
Confidence 45799999999999999999999988887654321 367899999999999998777666543
Q ss_pred ---CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005478 343 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 343 ---~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~ 419 (694)
++.++|||||||.+|...+.+++..+|++|||||++.++ +.|+.+++.++...++| +|+|+||+|+..
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv--------~~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV--------EAQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 688999999999999999999999999999999999874 56888898888888998 899999999874
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCCCCCCCcccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 498 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~~ 498 (694)
.. ++.+.+++... +++. ...++++||++|.|+.+ |+++| ..+++|..+.+.||++.
T Consensus 141 a~---~~~v~~ei~~~---lg~~--~~~vi~iSAktG~GI~~---------------Ll~~I~~~lp~P~~~~~~pl~~~ 197 (600)
T PRK05433 141 AD---PERVKQEIEDV---IGID--ASDAVLVSAKTGIGIEE---------------VLEAIVERIPPPKGDPDAPLKAL 197 (600)
T ss_pred cc---HHHHHHHHHHH---hCCC--cceEEEEecCCCCCHHH---------------HHHHHHHhCccccCCCCCCceEE
Confidence 32 23333444333 2332 12479999999999976 88888 55777777788999999
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec---ccccceeccCCceeEEeccc-cccccccCc
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGG 573 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~rG~ 573 (694)
|++++..+ .|.+ ++|||.+|+|++||+|+++|.+...+|.+|... ..++++|.||| |++.+.++ +..+++.||
T Consensus 198 Vfd~~~d~~~G~v-~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gd 275 (600)
T PRK05433 198 IFDSWYDNYRGVV-VLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGD 275 (600)
T ss_pred EEEEEecCCCceE-EEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCC
Confidence 99999988 8998 899999999999999999999998999999864 47899999999 55555566 456789999
Q ss_pred eeecCCCC
Q 005478 574 VLCHPDFP 581 (694)
Q Consensus 574 VL~~~~~~ 581 (694)
+|++.+.+
T Consensus 276 tl~~~~~~ 283 (600)
T PRK05433 276 TITLAKNP 283 (600)
T ss_pred EEECCCCc
Confidence 99976543
No 38
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-33 Score=299.29 Aligned_cols=282 Identities=26% Similarity=0.395 Sum_probs=231.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+...||||+.|+|||||||+..|+.+.|.+..+.-. --..||....|+++||||-..-..+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v---------------~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV---------------AERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch---------------hhhhcCccchhhhcCcEEEeccceeecCC
Confidence 456799999999999999999999998887654311 12478999999999999988888889999
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
.+++|+|||||.||--+..+.+...|.++|||||.+| +++||+-.+.-+.++|++ .||||||+|+...
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG--------pMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~A--- 135 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALALGLK-PIVVINKIDRPDA--- 135 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC--------CCCchhhhHHHHHHcCCC-cEEEEeCCCCCCC---
Confidence 9999999999999999999999999999999999998 479999999999999999 5899999999854
Q ss_pred hHhHHHHhhccchhcccccCC--CceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCCCCCCCcccceE
Q 005478 424 RFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~--~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~~I~ 500 (694)
+-+++..++-.++-.++..+. .+|++..||+.|..-..+..... .-..|+++| +++|.|..+.++||+|.|.
T Consensus 136 rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~-----~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt 210 (603)
T COG1217 136 RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEAD-----DMAPLFETILDHVPAPKGDLDEPLQMQVT 210 (603)
T ss_pred CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccccc-----chhHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 444456666666666655433 35889999999985544322111 113488887 7889999889999999999
Q ss_pred eEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC---eeeEEEeeeec----ccccceeccCCceeEEeccccccccccC
Q 005478 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (694)
Q Consensus 501 ~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~---~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~rG 572 (694)
..-... .|.+ ..|||.+|++++|+.|.+.-.. ...+|..+..+ +.++++|.|||+|+|+ |+ +++..|
T Consensus 211 ~Ldyn~y~GrI-gigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G~--~~~~ig 285 (603)
T COG1217 211 QLDYNSYVGRI-GIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--GL--EDINIG 285 (603)
T ss_pred eecccccccee-EEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc--Cc--cccccc
Confidence 888888 9999 8999999999999999988644 35677777654 5789999999999987 77 457789
Q ss_pred ceeecCCCCc
Q 005478 573 GVLCHPDFPV 582 (694)
Q Consensus 573 ~VL~~~~~~~ 582 (694)
++||+++.+.
T Consensus 286 dTi~d~~~~~ 295 (603)
T COG1217 286 DTICDPDNPE 295 (603)
T ss_pred ccccCCCCcc
Confidence 9999987653
No 39
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-34 Score=306.17 Aligned_cols=265 Identities=31% Similarity=0.394 Sum_probs=219.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC-
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~- 343 (694)
+..|++|+.|+|||||||..+|+..+|.|+.+.+++ .++|..+.||+||||+......+-+.+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~----------------q~LDkl~vERERGITIkaQtasify~~~ 122 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE----------------QVLDKLQVERERGITIKAQTASIFYKDG 122 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh----------------hhhhhhhhhhhcCcEEEeeeeEEEEEcC
Confidence 467899999999999999999999999887765442 478999999999999987666665555
Q ss_pred --eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 344 --~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
+.++|||||||.||..+..+.+..||++||||||.+|+ ++||...+.++.+.|+. +|.|+||+|+...+
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv--------qAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV--------QAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD 193 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc--------hHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC
Confidence 99999999999999999999999999999999999995 79999999999999998 89999999998655
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCCCCCCCcccceE
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~~I~ 500 (694)
.++ +..++..++ ++.+ -+++.+||++|.|+.+ ||++| +.+|+|....+.|||+.|+
T Consensus 194 pe~---V~~q~~~lF---~~~~--~~~i~vSAK~G~~v~~---------------lL~AII~rVPpP~~~~d~plr~Lif 250 (650)
T KOG0462|consen 194 PER---VENQLFELF---DIPP--AEVIYVSAKTGLNVEE---------------LLEAIIRRVPPPKGIRDAPLRMLIF 250 (650)
T ss_pred HHH---HHHHHHHHh---cCCc--cceEEEEeccCccHHH---------------HHHHHHhhCCCCCCCCCcchHHHhh
Confidence 544 555555554 2222 3679999999999976 89987 7899999999999999999
Q ss_pred eEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec---ccccceeccCCceeEEeccc-cccccccCcee
Q 005478 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGGVL 575 (694)
Q Consensus 501 ~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~rG~VL 575 (694)
+.+... .|.+ +.++|..|.|++||+|...-+++...|+.+... ..++....|||.--| +.++ +..+.+.|++|
T Consensus 251 ds~yD~y~G~I-~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyI-i~~mr~~~ea~IGdTi 328 (650)
T KOG0462|consen 251 DSEYDEYRGVI-ALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYI-ICNMRNVKEAQIGDTI 328 (650)
T ss_pred hhhhhhhcceE-EEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeeccccccee-Eeccccccccccccee
Confidence 999999 9999 899999999999999999999876666655442 346666666663322 2333 35567889999
Q ss_pred ecCC
Q 005478 576 CHPD 579 (694)
Q Consensus 576 ~~~~ 579 (694)
++..
T Consensus 329 ~~~~ 332 (650)
T KOG0462|consen 329 AHKS 332 (650)
T ss_pred eecc
Confidence 8765
No 40
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=1.2e-33 Score=285.26 Aligned_cols=207 Identities=36% Similarity=0.641 Sum_probs=185.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+|+||+|||||||+++|++..+.+..+.+.+++++....+++.+.+.+.+|...+|+++|+|++.....+.+++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999999999988888888788888888889999999999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~ 427 (694)
|||||||.+|...+..++..+|++|+|||+..+. ..++.+++.++..++++++|+|+||||+..+..+.++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--------~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV--------LEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--------cHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHH
Confidence 9999999999999999999999999999999874 46788888888888988788899999998766667777
Q ss_pred HHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCC
Q 005478 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (694)
Q Consensus 428 i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~ 487 (694)
+..++..+++.+++. .+++|++||++|.|+.+.. ..++||+|+|||++|+.+++|
T Consensus 153 i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~---~~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 153 IVADYLAFAAKLGIE--DITFIPISALDGDNVVSRS---ENMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCC---CCCCCCCCCcHHHHHhcCCCC
Confidence 888888888888863 3578999999999998755 358999999999999999876
No 41
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-33 Score=299.92 Aligned_cols=267 Identities=28% Similarity=0.432 Sum_probs=230.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-- 341 (694)
....|+.|+.|.|||||||..||+..++.++.+.|. +.++|....||+|||||......+.+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Yk~ 70 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNYKA 70 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEEEe
Confidence 356789999999999999999999999999998875 35789999999999999766555433
Q ss_pred ---CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 342 ---~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
+.+.++|||||||.||..+..+.++.|.++||||||++|+ +.||.....++...+.. +|-|+||+|+.
T Consensus 71 ~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv--------eAQTlAN~YlAle~~Le-IiPViNKIDLP 141 (603)
T COG0481 71 KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV--------EAQTLANVYLALENNLE-IIPVLNKIDLP 141 (603)
T ss_pred CCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch--------HHHHHHHHHHHHHcCcE-EEEeeecccCC
Confidence 4588999999999999999999999999999999999995 78999999999999998 99999999999
Q ss_pred ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCCCCCCCccc
Q 005478 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLM 497 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~ 497 (694)
..+.++ ++.++...+ |++.. ..+.+||++|.|+.+ +|++| ..+|+|..+.+.|++.
T Consensus 142 ~Adper---vk~eIe~~i---Gid~~--dav~~SAKtG~gI~~---------------iLe~Iv~~iP~P~g~~~~pLkA 198 (603)
T COG0481 142 AADPER---VKQEIEDII---GIDAS--DAVLVSAKTGIGIED---------------VLEAIVEKIPPPKGDPDAPLKA 198 (603)
T ss_pred CCCHHH---HHHHHHHHh---CCCcc--hheeEecccCCCHHH---------------HHHHHHhhCCCCCCCCCCcceE
Confidence 766655 556666554 65443 458999999999976 88887 7799999999999999
Q ss_pred ceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec---ccccceeccCCceeEEeccc-cccccccC
Q 005478 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSG 572 (694)
Q Consensus 498 ~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~rG 572 (694)
.|+|.+... .|.| +..||..|+|++||+|.++..+....|..+-.+ ..+.+...||| |+.-..|+ +..+.+.|
T Consensus 199 LifDS~yD~Y~GVv-~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VG 276 (603)
T COG0481 199 LIFDSWYDNYLGVV-VLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVG 276 (603)
T ss_pred EEEeccccccceEE-EEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCccc
Confidence 999999999 9988 899999999999999999999999999888775 45778899999 55555666 56788999
Q ss_pred ceeecCCC
Q 005478 573 GVLCHPDF 580 (694)
Q Consensus 573 ~VL~~~~~ 580 (694)
|+|+..++
T Consensus 277 DTiT~~~~ 284 (603)
T COG0481 277 DTITLASN 284 (603)
T ss_pred ceEeccCC
Confidence 99996543
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.98 E-value=1.3e-31 Score=267.80 Aligned_cols=193 Identities=35% Similarity=0.544 Sum_probs=165.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
++++|+++||+|+|||||+++|++... ..|+....-.+.+|...+|+++|+|++.....|++++.
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~ 65 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANR 65 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCe
Confidence 358999999999999999999996431 12222211125689999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.++|+|||||.+|...+..++..+|++|+|||+..|. ..|+++++.++..+|+|++|+|+||||++. .++.
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~--------~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~ 136 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGP--------MPQTREHLLLARQVGVPYIVVFLNKADMVD-DEEL 136 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHH
Confidence 9999999999999999999999999999999999874 579999999999999987889999999974 4556
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCcccccccc-CcchhhhhhccCCC
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK-GPCLLDAIDSLRPP 487 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~-G~~LL~~L~~l~~~ 487 (694)
++.+.+++..+|+.+++++..++++|+||++|.|+.+ .++||+ |++|+++|+++.++
T Consensus 137 ~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~------~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 137 LELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD------PNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred HHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC------CCcchhcHhHHHHHHHhCCCC
Confidence 7778889999999999987789999999999999854 378997 79999999876543
No 43
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=7.7e-30 Score=298.11 Aligned_cols=247 Identities=25% Similarity=0.354 Sum_probs=196.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
..+.++|+|+||+|||||||+++|... .+. ....+|+|++.+...+.+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~--~v~-----------------------------~~e~~GIT~~iga~~v~~~ 335 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT--NVA-----------------------------AGEAGGITQHIGAYQVETN 335 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC--Ccc-----------------------------ccccCceeeeccEEEEEEC
Confidence 467899999999999999999999732 110 1123789999998889998
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
+..++|||||||.+|..++.+++..+|++|||||+.+|. +.||.+++..+...++| +|||+||||+..++.
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv--------~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~ 406 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV--------MPQTIEAINHAKAAGVP-IIVAINKIDKPGANP 406 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC--------CHhHHHHHHHHHhcCCc-EEEEEECccccccCH
Confidence 999999999999999999999999999999999999874 58999999999999999 999999999976543
Q ss_pred hhHhHHHHhhc---cchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc---cCCCCCCCCCCcc
Q 005478 423 DRFDSIKVQLG---TFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLL 496 (694)
Q Consensus 423 e~~~~i~~~l~---~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~---l~~~~~~~~~pl~ 496 (694)
++ +..++. .+...++ ..++++++||++|+|+.+ |++.|.. +.......+.|++
T Consensus 407 e~---V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~e---------------Lle~I~~~~e~~~l~~~~~~~~~ 465 (787)
T PRK05306 407 DR---VKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDE---------------LLEAILLQAEVLELKANPDRPAR 465 (787)
T ss_pred HH---HHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchH---------------HHHhhhhhhhhhhcccCCCCCcE
Confidence 33 333222 1222222 247899999999999976 4444421 1122344567899
Q ss_pred cceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec-ccccceeccCCceeEEecccccccc-ccCc
Q 005478 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRV-MSGG 573 (694)
Q Consensus 497 ~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid~~~i-~rG~ 573 (694)
..|.+++..+ .|.+ ++|+|.+|+|++||.|+++| ...+|++|+.. +.+++.|.||+.|.|. |++ .+ ..|+
T Consensus 466 g~V~es~~dkg~G~v-~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~--~~p~~Gd 538 (787)
T PRK05306 466 GTVIEAKLDKGRGPV-ATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLS--GVPQAGD 538 (787)
T ss_pred EEEEEEEEcCCCeEE-EEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCC--CCCCCCC
Confidence 9999999888 8998 89999999999999999985 47899999984 7799999999999886 543 23 5799
Q ss_pred eeec
Q 005478 574 VLCH 577 (694)
Q Consensus 574 VL~~ 577 (694)
+|+.
T Consensus 539 ~l~~ 542 (787)
T PRK05306 539 EFVV 542 (787)
T ss_pred EEEE
Confidence 9984
No 44
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=1.2e-29 Score=290.25 Aligned_cols=246 Identities=25% Similarity=0.348 Sum_probs=192.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.+.++|+++||+|||||||+++|.+.. + .....+|+|++.+...+.+.+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--v-----------------------------~~~e~~GIT~~ig~~~v~~~~ 133 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--V-----------------------------AQGEAGGITQHIGAYHVENED 133 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--c-----------------------------ccccCCceeecceEEEEEECC
Confidence 456789999999999999999998421 1 011236899998888888755
Q ss_pred e-EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 344 Y-HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 344 ~-~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
. .++|||||||++|...+.+++..+|++|||||+..+. .+|+.+++..++..++| +|||+||+|+.+.+.
T Consensus 134 ~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv--------~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~ 204 (587)
T TIGR00487 134 GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGV--------MPQTIEAISHAKAANVP-IIVAINKIDKPEANP 204 (587)
T ss_pred CcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCC--------CHhHHHHHHHHHHcCCC-EEEEEECcccccCCH
Confidence 4 8999999999999999999999999999999999874 57999999999999999 999999999975333
Q ss_pred hhHhHHHHhhcc---chhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc---cCCCCCCCCCCcc
Q 005478 423 DRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLL 496 (694)
Q Consensus 423 e~~~~i~~~l~~---~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~---l~~~~~~~~~pl~ 496 (694)
++ +...+.. ....++ ..++++|+||++|+|+.+ |++.|.. +.......+.|++
T Consensus 205 e~---v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~e---------------Ll~~I~~~~~~~~l~~~~~~~~~ 263 (587)
T TIGR00487 205 DR---VKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDE---------------LLDMILLQSEVEELKANPNGQAS 263 (587)
T ss_pred HH---HHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHH---------------HHHhhhhhhhhccccCCCCCCce
Confidence 22 3332221 111122 235789999999999976 5555422 2222334568999
Q ss_pred cceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee-cccccceeccCCceeEEeccccccccccCce
Q 005478 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (694)
Q Consensus 497 ~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gid~~~i~rG~V 574 (694)
++|.+++..+ .|++ ++|+|.+|+|++||.|.++|. ..+|++|+. +...++.|.||+.|.|. |++. --..|+.
T Consensus 264 ~~V~ev~~~~g~G~v-~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~~-~p~aGd~ 337 (587)
T TIGR00487 264 GVVIEAQLDKGRGPV-ATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLSD-VPAAGDE 337 (587)
T ss_pred eEEEEEEEeCCCcEE-EEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCCC-CCCCCCE
Confidence 9999999988 8998 899999999999999999986 578999998 67799999999999876 5531 1256888
Q ss_pred ee
Q 005478 575 LC 576 (694)
Q Consensus 575 L~ 576 (694)
|+
T Consensus 338 ~~ 339 (587)
T TIGR00487 338 FI 339 (587)
T ss_pred EE
Confidence 86
No 45
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.97 E-value=2e-29 Score=297.48 Aligned_cols=286 Identities=27% Similarity=0.351 Sum_probs=214.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec---
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~--- 341 (694)
...||+|+||+|||||||+++|++..+.+..+. .|. ++.+|..++|+++|+|++.+...+.+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AGE-----QLALDFDEEEQARGITIKAANVSMVHEYE 83 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cCc-----ceecCccHHHHHhhhhhhccceEEEEEec
Confidence 567999999999999999999999988876531 111 45789999999999999887665544
Q ss_pred -CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 342 -KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 342 -~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
.++.++|+|||||.+|...+.+++..+|++|+|||+..|+ ..|++.++..+...++| .||++||||+...
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~--------~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~ 154 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV--------MPQTETVLRQALRERVK-PVLFINKVDRLIK 154 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC--------CccHHHHHHHHHHcCCC-eEEEEECchhhcc
Confidence 5788999999999999999999999999999999999884 57999999998889998 6899999998632
Q ss_pred --------chhhHhHHHHhhccchhcc---------cccCCCceEEEeecccCCCcccCC------------------CC
Q 005478 421 --------SKDRFDSIKVQLGTFLRSC---------GFKDASLTWIPLSALENQNLVTAP------------------DD 465 (694)
Q Consensus 421 --------~~e~~~~i~~~l~~~l~~~---------g~~~~~v~~IpvSA~~G~nI~e~~------------------~~ 465 (694)
...++..+.+++..++..+ .+.+..-.+++.||+.+.++.... ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~ 234 (731)
T PRK07560 155 ELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQ 234 (731)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCH
Confidence 1334444445554444322 122222345678999887775100 00
Q ss_pred ccccccccC-cchhhhhh-ccCCCCC-------------------------CCCCCcccceEeEEecC-CCeEeeEEEEe
Q 005478 466 GRLLSWYKG-PCLLDAID-SLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLE 517 (694)
Q Consensus 466 ~~~~~wy~G-~~LL~~L~-~l~~~~~-------------------------~~~~pl~~~I~~v~~~~-~G~V~v~GrV~ 517 (694)
..+..|+-- ..||++|. .+|.|.. +.+.|+.+.|++++..+ .|.+ ++|||.
T Consensus 235 ~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~v-a~~RV~ 313 (731)
T PRK07560 235 KELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEV-ATGRVF 313 (731)
T ss_pred HHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeE-EEEEEE
Confidence 000111100 14778774 4565531 22457888899998888 8988 899999
Q ss_pred eeeecCCCEEEEecCCeeeEEEeeeec----ccccceeccCCceeEEeccccccccccCceeecCC
Q 005478 518 AGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 518 sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
+|+|++||.|++.+.+...+|..|... ..+++.|.||++|+|. |++ ++..|++|+.+.
T Consensus 314 sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--gl~--~~~~GdtL~~~~ 375 (731)
T PRK07560 314 SGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVT--GLK--DARAGETVVSVE 375 (731)
T ss_pred EeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEE--ccc--ccccCCEEeCCC
Confidence 999999999999998888889888754 5689999999999985 653 467899998754
No 46
>PRK00007 elongation factor G; Reviewed
Probab=99.96 E-value=1.7e-28 Score=288.10 Aligned_cols=270 Identities=27% Similarity=0.344 Sum_probs=203.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
...||+|+||+|+|||||+++|++..+.+..- |+- ..-.+.+|..++|+++|+|++.....+.+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v-~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~ 75 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFWKDH 75 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------ccc-cCCcccCCCCHHHHhCCCCEeccEEEEEECCe
Confidence 46799999999999999999999888776321 000 01146899999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.++|+|||||.+|...+.+++..+|++||||||..|. ..|+++++.++..+|+| +||++||||+...+
T Consensus 76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~--------~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~--- 143 (693)
T PRK00007 76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV--------EPQSETVWRQADKYKVP-RIAFVNKMDRTGAD--- 143 (693)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc--------chhhHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 9999999999999999999999999999999999884 68999999999999999 68999999998533
Q ss_pred HhHHHHhhccchhcccc---------------------------------------------------------------
Q 005478 425 FDSIKVQLGTFLRSCGF--------------------------------------------------------------- 441 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~--------------------------------------------------------------- 441 (694)
+..+.+++...+....+
T Consensus 144 ~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~d 223 (693)
T PRK00007 144 FYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEAD 223 (693)
T ss_pred HHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccC
Confidence 22233333322211100
Q ss_pred ---------------------------cCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhh-ccCCCCC----
Q 005478 442 ---------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR---- 489 (694)
Q Consensus 442 ---------------------------~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~-~l~~~~~---- 489 (694)
...-+|++..||+++.|+. .||++|. .+|.|..
T Consensus 224 d~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~---------------~LLd~I~~~lPsP~~~~~~ 288 (693)
T PRK00007 224 EELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDVPAI 288 (693)
T ss_pred HHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHH---------------HHHHHHHHHCCChhhcccc
Confidence 0011223333444444442 3888874 4555531
Q ss_pred ----------------CCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----cccc
Q 005478 490 ----------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSC 548 (694)
Q Consensus 490 ----------------~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v 548 (694)
+.+.|+.+.|+++...+ .|.+ +++||.+|+|+.||+|+..-.++..+|..|... ..++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i-a~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v 367 (693)
T PRK00007 289 KGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKL-TFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEI 367 (693)
T ss_pred cccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccc
Confidence 12457888898988877 7988 899999999999999986655556677777653 5789
Q ss_pred ceeccCCceeEEeccccccccccCceeecCC
Q 005478 549 SVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 549 ~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
++|.||++++|. |++ +++.|++|+++.
T Consensus 368 ~~~~aGdI~~i~--gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 368 KEVRAGDIAAAV--GLK--DTTTGDTLCDEK 394 (693)
T ss_pred cccCCCcEEEEe--CCc--cCCcCCEeeCCC
Confidence 999999999885 654 467899998754
No 47
>PRK12739 elongation factor G; Reviewed
Probab=99.96 E-value=2.3e-28 Score=287.11 Aligned_cols=270 Identities=27% Similarity=0.360 Sum_probs=205.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..+||+|+||+|+|||||+++|++..+.+.... . ...+ .+.+|..++|+++|+|++.....+.++++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~--~-------v~~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 73 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIG--E-------VHDG----AATMDWMEQEQERGITITSAATTCFWKGH 73 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccc--c-------ccCC----ccccCCChhHhhcCCCccceeEEEEECCE
Confidence 568999999999999999999998877653210 0 0011 46889999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.++|||||||.+|...+..++..+|++|+|||+..|. ..|+++++.++...++| +||++||||+...+
T Consensus 74 ~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~--------~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~--- 141 (691)
T PRK12739 74 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV--------EPQSETVWRQADKYGVP-RIVFVNKMDRIGAD--- 141 (691)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 9999999999999999999999999999999999874 57999999999999999 78999999998533
Q ss_pred HhHHHHhhccchhcccc---------------------------------------------------------------
Q 005478 425 FDSIKVQLGTFLRSCGF--------------------------------------------------------------- 441 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~--------------------------------------------------------------- 441 (694)
+..+.+++...+....+
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~d 221 (691)
T PRK12739 142 FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVD 221 (691)
T ss_pred HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 23333333333321100
Q ss_pred ---------------------------cCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhh-ccCCCCC----
Q 005478 442 ---------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR---- 489 (694)
Q Consensus 442 ---------------------------~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~-~l~~~~~---- 489 (694)
...-+|++..||+++.|+. .||++|. .+|.|..
T Consensus 222 d~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~---------------~LLd~I~~~lPsP~~~~~~ 286 (691)
T PRK12739 222 EELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDVPAI 286 (691)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHH---------------HHHHHHHHHCCChhhcccc
Confidence 0011233334444444443 3888874 4555421
Q ss_pred ---------------CCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee----cccccc
Q 005478 490 ---------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCS 549 (694)
Q Consensus 490 ---------------~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~ 549 (694)
+.+.||.+.|++++..+ .|.+ +++||.+|+|+.||.|+..-.++..+|..|.. ...+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 365 (691)
T PRK12739 287 KGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRL-TFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIK 365 (691)
T ss_pred ccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeE-EEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCccccc
Confidence 23558888899998887 7988 89999999999999998766666667777654 257899
Q ss_pred eeccCCceeEEeccccccccccCceeecCC
Q 005478 550 VARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 550 ~A~aGd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
.|.|||+++|. |++ .++.|++|++..
T Consensus 366 ~~~aGdI~~i~--gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 366 EVYAGDIAAAV--GLK--DTTTGDTLCDEK 391 (691)
T ss_pred ccCCCCEEEEe--CCC--cccCCCEEeCCC
Confidence 99999999887 654 368899998654
No 48
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.96 E-value=6.1e-28 Score=279.84 Aligned_cols=247 Identities=26% Similarity=0.333 Sum_probs=188.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~- 341 (694)
..+.++|+|+||+|||||||+++|+..... ....+|+|++.....+.+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEEE
Confidence 356789999999999999999999843221 122367887766655544
Q ss_pred ---CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 342 ---~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
.+..++|||||||..|..++.+++..+|++|||||+..|. +.||.+++..+...++| +|||+||||+.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv--------~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV--------KPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC--------ChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 3589999999999999999999999999999999999874 57999999999999999 99999999997
Q ss_pred ccchhhHhHHHHhhccc---hhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccC---CCCCCCC
Q 005478 419 QYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR---PPPREFS 492 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~---l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~---~~~~~~~ 492 (694)
..+ ++.+..++..+ ...++ ..++++++||++|.|+.+ |++.|..+. .......
T Consensus 361 ~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIde---------------Lle~I~~l~e~~~lk~~~~ 419 (742)
T CHL00189 361 NAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDK---------------LLETILLLAEIEDLKADPT 419 (742)
T ss_pred ccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHH---------------HHHhhhhhhhhhcccCCCC
Confidence 533 23333333221 22222 246899999999999976 555553321 2223345
Q ss_pred CCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee-cccccceeccCCceeEEeccccccccc
Q 005478 493 KPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRVM 570 (694)
Q Consensus 493 ~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (694)
.|+...|.++...+ .|++ ++|+|.+|+|++||.|+++| ...+|++|.. +..++..|.||+.|.|. |++ ....
T Consensus 420 ~~~~g~V~e~~iD~~~G~V-~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~ 493 (742)
T CHL00189 420 QLAQGIILEAHLDKTKGPV-ATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPA 493 (742)
T ss_pred CCceEEEEEEEEcCCCceE-EEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCC
Confidence 67888888887777 8999 89999999999999999998 4689999985 47899999999999874 552 2244
Q ss_pred cCceee
Q 005478 571 SGGVLC 576 (694)
Q Consensus 571 rG~VL~ 576 (694)
.|+.|.
T Consensus 494 ~Gd~l~ 499 (742)
T CHL00189 494 TGEHFQ 499 (742)
T ss_pred CCCEEE
Confidence 577775
No 49
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.96 E-value=1.4e-27 Score=270.73 Aligned_cols=278 Identities=24% Similarity=0.333 Sum_probs=208.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
....+|+|+||+|||||||+++|++..+.+...... .++. ......+|..+.|+++|+|+......|++++
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------eccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 356799999999999999999999887776433210 0111 0111236888999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch-
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK- 422 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~- 422 (694)
+.++|||||||.+|...+..++..+|++|+|||+..++ ..+++.++.++...++| +|+++||||+...+.
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv--------~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~ 149 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV--------EPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPL 149 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECCcccccCHH
Confidence 99999999999999999999999999999999999874 56888999999999999 899999999875332
Q ss_pred hhHhHHHHhhccc-----------------------------------------------------hh------------
Q 005478 423 DRFDSIKVQLGTF-----------------------------------------------------LR------------ 437 (694)
Q Consensus 423 e~~~~i~~~l~~~-----------------------------------------------------l~------------ 437 (694)
+.++++.+.+..- +.
T Consensus 150 ~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~le 229 (526)
T PRK00741 150 ELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELE 229 (526)
T ss_pred HHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHH
Confidence 1223333222110 00
Q ss_pred -----------cccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc-cCCCCCC---------CCCCcc
Q 005478 438 -----------SCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSKPLL 496 (694)
Q Consensus 438 -----------~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~~~~~~---------~~~pl~ 496 (694)
..-.....+|++..||+++.|+.. ||++|.. +|.|... ...+|.
T Consensus 230 l~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~---------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~ 294 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQE---------------FLDAFVEWAPAPQPRQTDEREVEPTEEKFS 294 (526)
T ss_pred hhhhcccchhHHHHhcCCeEEEEEeecccCcCHHH---------------HHHHHHHHCCCCCcccccceeecCCCCceE
Confidence 000001225788889999998865 9999855 5545311 134577
Q ss_pred cceEeEEe---cC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee----cccccceeccCCceeEEeccccccc
Q 005478 497 MPICDVLK---SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSR 568 (694)
Q Consensus 497 ~~I~~v~~---~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~ 568 (694)
..|+++.. .+ .|.+ ++.||.||+|+.|+.|+....++..+|..+.. .+.++++|.|||+++|. + ..+
T Consensus 295 ~~VFK~~~~m~~~~~grl-afvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~--~--l~~ 369 (526)
T PRK00741 295 GFVFKIQANMDPKHRDRI-AFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH--N--HGT 369 (526)
T ss_pred EEEEEEEecCCCCcCceE-EEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE--C--CCC
Confidence 77777763 33 7888 89999999999999999988888888877654 35789999999999887 3 456
Q ss_pred cccCceeecCC
Q 005478 569 VMSGGVLCHPD 579 (694)
Q Consensus 569 i~rG~VL~~~~ 579 (694)
++.||+|+..+
T Consensus 370 ~~~GDTL~~~~ 380 (526)
T PRK00741 370 IQIGDTFTQGE 380 (526)
T ss_pred CccCCCccCCC
Confidence 88999998754
No 50
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.96 E-value=9.8e-28 Score=281.85 Aligned_cols=281 Identities=27% Similarity=0.359 Sum_probs=202.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
...||+|+||+|+|||||+++|++..+.+.... + .....+.+|..+.|+++|+|++.....+.+++.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~------------~-~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~ 75 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIG------------E-VHDGAATMDWMEQEKERGITITSAATTVFWKGH 75 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccc------------c-ccCCccccCCCHHHHhcCCCEecceEEEEECCe
Confidence 467999999999999999999998877763211 0 011247889999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.++|||||||.+|...+..++..+|++|||||+..+. ..++.+++.++...++| +|+|+||||+...+
T Consensus 76 ~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~--------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~--- 143 (689)
T TIGR00484 76 RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV--------QPQSETVWRQANRYEVP-RIAFVNKMDKTGAN--- 143 (689)
T ss_pred EEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC--------ChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 9999999999999999999999999999999999874 56889999999999999 78999999998533
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCC-CcccCCC---------------------------------------
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAPD--------------------------------------- 464 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~-nI~e~~~--------------------------------------- 464 (694)
++.+.+++...+....+ ...+|+|+..+. ++.+...
T Consensus 144 ~~~~~~~i~~~l~~~~~----~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 219 (689)
T TIGR00484 144 FLRVVNQIKQRLGANAV----PIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVA 219 (689)
T ss_pred HHHHHHHHHHHhCCCce----eEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 23333333333321110 123444444332 0000000
Q ss_pred ------------------------------CccccccccC--------cchhhhhh-ccCCCCC----------------
Q 005478 465 ------------------------------DGRLLSWYKG--------PCLLDAID-SLRPPPR---------------- 489 (694)
Q Consensus 465 ------------------------------~~~~~~wy~G--------~~LL~~L~-~l~~~~~---------------- 489 (694)
...+.+-+-| ..||++|. .+|.|..
T Consensus 220 e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 299 (689)
T TIGR00484 220 EFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIE 299 (689)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceee
Confidence 0000011111 34888874 4555431
Q ss_pred ---CCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----ccccceeccCCceeEEe
Q 005478 490 ---EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSL 561 (694)
Q Consensus 490 ---~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L 561 (694)
+.+.||.+.|+++...+ .|.+ +++||.+|+|+.||+|+..-.+...+|..|... ..+++.|.|||+++|.
T Consensus 300 ~~~~~~~~l~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~- 377 (689)
T TIGR00484 300 RKASDDEPFSALAFKVATDPFVGQL-TFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAI- 377 (689)
T ss_pred ecCCCCCceEEEEEEeeecCCCCeE-EEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEc-
Confidence 12457888899998888 8888 899999999999999997655555666666542 4689999999999886
Q ss_pred ccccccccccCceeecCC
Q 005478 562 QGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 562 ~gid~~~i~rG~VL~~~~ 579 (694)
|++ .+..|++|+++.
T Consensus 378 -gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 378 -GLK--DTTTGDTLCDPK 392 (689)
T ss_pred -CCC--CCCCCCEEeCCC
Confidence 654 457899998754
No 51
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.96 E-value=1.5e-27 Score=270.48 Aligned_cols=278 Identities=23% Similarity=0.307 Sum_probs=207.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.+..+|+|+||+|+|||||+++|++..+.|..... ..++++... ..+|..+.|+++|+|+......+++++
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~~~~-t~~D~~~~E~~rgisi~~~~~~~~~~~ 79 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGSQRH-AKSDWMEMEKQRGISITTSVMQFPYRD 79 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------ecccccccc-ccCCCCHHHHhcCCcEEEEEEEEeeCC
Confidence 45689999999999999999999988777654321 112222222 247889999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
..++|||||||.+|...+..++..+|++|+|||+..++ ..++..++.+++..++| +|+++||||+...+..
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv--------~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~ 150 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV--------ETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPL 150 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECccccCCCHH
Confidence 99999999999999999999999999999999999874 46888888888888988 8999999998643322
Q ss_pred h-HhHHHHhhccc-------------------------------------------------------------------
Q 005478 424 R-FDSIKVQLGTF------------------------------------------------------------------- 435 (694)
Q Consensus 424 ~-~~~i~~~l~~~------------------------------------------------------------------- 435 (694)
. ++++...+...
T Consensus 151 ~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le 230 (527)
T TIGR00503 151 ELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELE 230 (527)
T ss_pred HHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHH
Confidence 2 22222221110
Q ss_pred -hhc--------ccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc-cCCCCCC---------CCCCcc
Q 005478 436 -LRS--------CGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSKPLL 496 (694)
Q Consensus 436 -l~~--------~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~~~~~~---------~~~pl~ 496 (694)
+.. .-....-+|++..||+++.|+.. ||++|.. +|.|... ...+|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~---------------LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~ 295 (527)
T TIGR00503 231 LVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH---------------FLDGLLQWAPKPEARQSDTRTVEPTEEKFS 295 (527)
T ss_pred HHhhhccccCHHHHhcCCeeEEEEeecccCccHHH---------------HHHHHHHHCCCCccccCCceecCCCCCCee
Confidence 000 00001234556667777777754 8998854 4545321 135677
Q ss_pred cceEeEEe--c-C-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee----cccccceeccCCceeEEeccccccc
Q 005478 497 MPICDVLK--S-Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSR 568 (694)
Q Consensus 497 ~~I~~v~~--~-~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~ 568 (694)
..|+++.. . + .|++ ++.||.||+|+.|++|+....++..+|..++. .+.++++|.|||+++|. + ...
T Consensus 296 ~~VFK~~~~mdp~~~gri-af~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~--~--~~~ 370 (527)
T TIGR00503 296 GFVFKIQANMDPKHRDRV-AFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH--N--HGT 370 (527)
T ss_pred EEEEEEEeccCcccCceE-EEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE--C--CCC
Confidence 77777766 4 4 8998 89999999999999999888888888887764 35789999999999886 3 456
Q ss_pred cccCceeecCC
Q 005478 569 VMSGGVLCHPD 579 (694)
Q Consensus 569 i~rG~VL~~~~ 579 (694)
++.||+||+..
T Consensus 371 ~~~GDtl~~~~ 381 (527)
T TIGR00503 371 IQIGDTFTQGE 381 (527)
T ss_pred cccCCEecCCC
Confidence 88899998743
No 52
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.96 E-value=2.2e-28 Score=242.83 Aligned_cols=181 Identities=39% Similarity=0.639 Sum_probs=155.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--c
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--S 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~--~ 341 (694)
++.++|+++||+|||||||+++|++..+.+......+ .....++..++|+++|+|++.....+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-------------TKNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-------------HHHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccc-------------cccccccccchhhhcccccccccccccccc
Confidence 3578999999999999999999999988876654322 012347888999999999999999998 8
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
.++.++|+|||||.+|.+++..++..+|++|+|||+..|. ..|+.+|+.++..+++| +|||+||||++
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~--------~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI--------QPQTEEHLKILRELGIP-IIVVLNKMDLI--- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS--------THHHHHHHHHHHHTT-S-EEEEEETCTSS---
T ss_pred cccceeecccccccceeecccceecccccceeeeeccccc--------ccccccccccccccccc-eEEeeeeccch---
Confidence 9999999999999999999999999999999999999884 68999999999999999 99999999998
Q ss_pred hhhHhHHHHhhc-cchhcccccC-CCceEEEeecccCCCcccCCCCccccccccCcchhhhhhcc
Q 005478 422 KDRFDSIKVQLG-TFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (694)
Q Consensus 422 ~e~~~~i~~~l~-~~l~~~g~~~-~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l 484 (694)
..++.++.+++. .+++..++.. ..++++|+||++|.|+.+ |+++|...
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~---------------Ll~~l~~~ 185 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDE---------------LLEALVEL 185 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHH---------------HHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHH---------------HHHHHHHh
Confidence 566777777777 6667777765 468999999999999976 88888543
No 53
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.7e-29 Score=252.09 Aligned_cols=345 Identities=24% Similarity=0.345 Sum_probs=266.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-- 341 (694)
...+||+.+||+.+||||++.++.+- .+-.++.|-++.||+.+++.....
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv----------------------------~TvrFK~ELERNITIKLGYANAKIYk 87 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGV----------------------------HTVRFKNELERNITIKLGYANAKIYK 87 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccc----------------------------eEEEehhhhhcceeEEeccccceEEe
Confidence 35799999999999999999999742 122345667788888877653210
Q ss_pred -C----------------------------------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCcccccc
Q 005478 342 -K----------------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGM 386 (694)
Q Consensus 342 -~----------------------------------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~ 386 (694)
. -+++.|+|+|||.-++.+|+.|++..|+++|+|.+++..
T Consensus 88 c~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC----- 162 (466)
T KOG0466|consen 88 CDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC----- 162 (466)
T ss_pred cCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-----
Confidence 0 146889999999999999999999999999999999865
Q ss_pred ccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCc
Q 005478 387 NTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (694)
Q Consensus 387 ~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~ 466 (694)
+++||.||+.....|.++++|++-||+|++. ++...+-.+++..|++.... ...|+||+||.-+.||+.
T Consensus 163 --PQPQTsEHLaaveiM~LkhiiilQNKiDli~--e~~A~eq~e~I~kFi~~t~a--e~aPiiPisAQlkyNId~----- 231 (466)
T KOG0466|consen 163 --PQPQTSEHLAAVEIMKLKHIIILQNKIDLIK--ESQALEQHEQIQKFIQGTVA--EGAPIIPISAQLKYNIDV----- 231 (466)
T ss_pred --CCCchhhHHHHHHHhhhceEEEEechhhhhh--HHHHHHHHHHHHHHHhcccc--CCCceeeehhhhccChHH-----
Confidence 5789999999999999999999999999996 33444455666677765544 346889999999999965
Q ss_pred cccccccCcchhhhh-hccCCCCCCCCCCcccceEeEEecC---------CCeEeeEEEEeeeeecCCCEEEEecCCe--
Q 005478 467 RLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE-- 534 (694)
Q Consensus 467 ~~~~wy~G~~LL~~L-~~l~~~~~~~~~pl~~~I~~v~~~~---------~G~V~v~GrV~sG~L~~Gd~v~i~P~~~-- 534 (694)
+.++| ..+|.|.|++..|.+|.|.+.|.+. .|.| +.|.+..|.|++||.|.+.|.-.
T Consensus 232 ----------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgv-aggsil~Gvlkvg~~IEiRPGiv~k 300 (466)
T KOG0466|consen 232 ----------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGV-AGGSILKGVLKVGQEIEIRPGIVTK 300 (466)
T ss_pred ----------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCcc-ccchhhhhhhhcCcEEEecCceeee
Confidence 88887 6789999999999999998888764 4677 89999999999999999999631
Q ss_pred ----e-------eEEEeeeecccccceeccCCceeEEeccccc----cccccCceeecCCCCcceeeEEEEEEEEecC--
Q 005478 535 ----V-------GTVHSIERDSQSCSVARAGDNIAVSLQGIDV----SRVMSGGVLCHPDFPVAIATHLELKVLVLDF-- 597 (694)
Q Consensus 535 ----~-------~~VksI~~~~~~v~~A~aGd~V~l~L~gid~----~~i~rG~VL~~~~~~~~~~~~f~a~v~vl~~-- 597 (694)
. .+|.++...+.+++.|.+|-.+++.-+ +|+ .+-..|.||...+..|....+++...++|..
T Consensus 301 d~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~-~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrll 379 (466)
T KOG0466|consen 301 DENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTK-MDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLL 379 (466)
T ss_pred cCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccc-cCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHh
Confidence 1 245555666788999999999998643 333 2345688888888888888888888777741
Q ss_pred ------------CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecccc
Q 005478 598 ------------APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSN 665 (694)
Q Consensus 598 ------------~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~~~ 665 (694)
...+..|.-..+.+|+....++|..+.. ..+++.|..|+|.+-.+.
T Consensus 380 gvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~----------------------d~~k~~Lt~P~CteigEk 437 (466)
T KOG0466|consen 380 GVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA----------------------DMAKIQLTSPVCTEIGEK 437 (466)
T ss_pred ccccccccccchhhhcccCcEEEEEecccccCceEEEEec----------------------ceeeeEecCchhcccchh
Confidence 1345667778888888888888876532 245777889999987652
Q ss_pred cCCcceEEEEeCCcEEEEEEEEe
Q 005478 666 CRALGRAFLRSSGRTIAVGIVTR 688 (694)
Q Consensus 666 ~~~lgrfiLr~~g~Tvg~G~V~~ 688 (694)
. +++|.+=+ ..|.||+|.|.+
T Consensus 438 i-AlSRrvek-hWRLIGwg~I~~ 458 (466)
T KOG0466|consen 438 I-ALSRRVEK-HWRLIGWGQIKA 458 (466)
T ss_pred h-hhhhhhhh-heEEecceeEeC
Confidence 2 44444433 568999999864
No 54
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.95 E-value=3e-27 Score=271.17 Aligned_cols=246 Identities=22% Similarity=0.316 Sum_probs=180.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
..+++.|+|+||+|||||||+++|.+....- ....|+|.+.+...+.+.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~-------------------------------~~~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAA-------------------------------KEAGGITQHIGATEVPID 51 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCccccc-------------------------------CCCCceEEeeceeecccc
Confidence 3467789999999999999999997432110 011334444333222211
Q ss_pred ------------------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC
Q 005478 343 ------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 404 (694)
Q Consensus 343 ------------------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg 404 (694)
-..++|||||||++|...+.+++..+|++|||||++.|. .+|+.+++.++...+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~--------~~qt~e~i~~~~~~~ 123 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGF--------QPQTIEAINILKRRK 123 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCC--------CHhHHHHHHHHHHcC
Confidence 012799999999999999999999999999999999873 579999999999999
Q ss_pred CCcEEEEEeccccc-ccc------------------hhhHhHHHHhhccchhcccccC----------CCceEEEeeccc
Q 005478 405 VDQLIVAVNKMDAV-QYS------------------KDRFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALE 455 (694)
Q Consensus 405 ip~iIVVVNK~Dlv-~~~------------------~e~~~~i~~~l~~~l~~~g~~~----------~~v~~IpvSA~~ 455 (694)
+| +|+|+||+|+. .|. ...|++...++...|...|+.. ..++++|+||++
T Consensus 124 vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 124 TP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred CC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 99 99999999985 343 2334444455555666666543 357899999999
Q ss_pred CCCcccCCCCccccccccCcchhhhhhc-----cCC-CCCCCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEE
Q 005478 456 NQNLVTAPDDGRLLSWYKGPCLLDAIDS-----LRP-PPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVL 528 (694)
Q Consensus 456 G~nI~e~~~~~~~~~wy~G~~LL~~L~~-----l~~-~~~~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~ 528 (694)
|+|+.+ |++.+.. ++. -..+.+.|++++|.+++..+ .|++ ++|+|.+|+|++||.|.
T Consensus 203 GeGi~d---------------Ll~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v-~~~~v~~GtL~~Gd~vv 266 (586)
T PRK04004 203 GEGIPD---------------LLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTT-IDVILYDGTLRKGDTIV 266 (586)
T ss_pred CCChHH---------------HHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceE-EEEEEEcCEEECCCEEE
Confidence 999976 4444321 211 12345789999999999988 9998 99999999999999999
Q ss_pred EecCCe--eeEEEeeeecc------------cccceeccCCceeEEeccc
Q 005478 529 VLPSGE--VGTVHSIERDS------------QSCSVARAGDNIAVSLQGI 564 (694)
Q Consensus 529 i~P~~~--~~~VksI~~~~------------~~v~~A~aGd~V~l~L~gi 564 (694)
++|... .++|++|..+. ..++.|.|...|.+...|+
T Consensus 267 ~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl 316 (586)
T PRK04004 267 VGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDL 316 (586)
T ss_pred ECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCc
Confidence 999874 46999998752 4566666766665543344
No 55
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-27 Score=257.96 Aligned_cols=237 Identities=24% Similarity=0.280 Sum_probs=192.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~- 341 (694)
..+++.|.|+||+|||||||+.+|......- .-..|||..++...+..
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-------------------------------~E~GGITQhIGAF~V~~p 198 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-------------------------------GEAGGITQHIGAFTVTLP 198 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceeh-------------------------------hhcCCccceeceEEEecC
Confidence 3467889999999999999999998432211 11278999988776654
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
.+..++|+|||||..|..+..+|+..+|.+||||.|.+|+ ++||.|.+..++..++| +||++||+|+.+.+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV--------mpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV--------MPQTLEAIKHAKSANVP-IVVAINKIDKPGAN 269 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc--------cHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC
Confidence 6789999999999999999999999999999999999985 79999999999999999 99999999998776
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhh---ccCCCCCCCCCCcccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID---SLRPPPREFSKPLLMP 498 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~---~l~~~~~~~~~pl~~~ 498 (694)
.++...-.-...-.++.+| ..+++||+||++|+|+.. |.+++. .+..-..+...|+.-.
T Consensus 270 pekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~---------------L~eaill~Ae~mdLkA~p~g~~eg~ 331 (683)
T KOG1145|consen 270 PEKVKRELLSQGIVVEDLG---GDVQVIPISALTGENLDL---------------LEEAILLLAEVMDLKADPKGPAEGW 331 (683)
T ss_pred HHHHHHHHHHcCccHHHcC---CceeEEEeecccCCChHH---------------HHHHHHHHHHHhhcccCCCCCceEE
Confidence 6664333333344456666 578999999999999965 555542 1222233457788888
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec-ccccceeccCCceeEE
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVS 560 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~ 560 (694)
|-+..-.+ +|.+ .+..|..|+|++|+.++.+ ...++|+++..+ ..++++|.|++.|.+.
T Consensus 332 VIES~vdkg~G~~-aT~iVkrGTLkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V~ 392 (683)
T KOG1145|consen 332 VIESSVDKGRGPV-ATVIVKRGTLKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEVL 392 (683)
T ss_pred EEEeeecCCccce-eEEEEeccccccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEee
Confidence 88888887 9999 8999999999999999987 558899999865 6899999999999775
No 56
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-27 Score=275.62 Aligned_cols=275 Identities=29% Similarity=0.401 Sum_probs=208.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.....||+|+||++||||||..+|++..|.+.... .-..| +..+|....|++||+||..+...+.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G---------~v~~g----~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG---------EVHDG----AATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc---------cccCC----CccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 34678999999999999999999999999886421 00111 346899999999999999999999999
Q ss_pred C-eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 343 ~-~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
+ +.|+|||||||.||...+.++++.+|+||+||||..|+ +.||...++.+...++| .|+++||||+...+
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV--------~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~ 144 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGV--------EPQTETVWRQADKYGVP-RILFVNKMDRLGAD 144 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCe--------eecHHHHHHHHhhcCCC-eEEEEECccccccC
Confidence 6 99999999999999999999999999999999999985 68999999999999999 68899999988533
Q ss_pred hhh-HhHHHHhhccchhcccc----------------------c------------------------------------
Q 005478 422 KDR-FDSIKVQLGTFLRSCGF----------------------K------------------------------------ 442 (694)
Q Consensus 422 ~e~-~~~i~~~l~~~l~~~g~----------------------~------------------------------------ 442 (694)
... .+++...+.......+. .
T Consensus 145 ~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l 224 (697)
T COG0480 145 FYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEEL 224 (697)
T ss_pred hhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHH
Confidence 211 12222222221100000 0
Q ss_pred -------------------------CCCceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCC-------
Q 005478 443 -------------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR------- 489 (694)
Q Consensus 443 -------------------------~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~------- 489 (694)
...++.+.-||..+.|+ ..||+++ +.+|.|..
T Consensus 225 ~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv---------------~~lLdav~~~lPsP~e~~~~~g~ 289 (697)
T COG0480 225 MEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGV---------------QPLLDAVVDYLPSPLDVPPIKGD 289 (697)
T ss_pred HHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcH---------------HHHHHHHHHHCCChhhccccccc
Confidence 00122222333333322 2478887 44555411
Q ss_pred -------------CCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----cccccee
Q 005478 490 -------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVA 551 (694)
Q Consensus 490 -------------~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A 551 (694)
+.+.|+.+.++++...+ .|.+ .++||.||+|+.||.++....++..+|..|... +.+++++
T Consensus 290 ~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l-~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~ 368 (697)
T COG0480 290 LDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKL-TFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEV 368 (697)
T ss_pred CCccccchhcccCCCCCceEEEEEEeEecCCCCeE-EEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccc
Confidence 23678999999999988 8998 679999999999999999888878888887653 4689999
Q ss_pred ccCCceeEEeccccccccccCceeecCC
Q 005478 552 RAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 552 ~aGd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
.||+++++. |++. ...|++||+.+
T Consensus 369 ~AG~I~a~~--Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 369 PAGDIVALV--GLKD--ATTGDTLCDEN 392 (697)
T ss_pred cCccEEEEE--cccc--cccCCeeecCC
Confidence 999999887 6643 46799999876
No 57
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=9.2e-27 Score=266.18 Aligned_cols=253 Identities=25% Similarity=0.367 Sum_probs=178.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-- 342 (694)
+.+.|+|+||+|||||||+++|++..... ....|+|.+++..++.+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~-------------------------------~e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK-------------------------------REAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc-------------------------------ccCCceecccCeeEeeeccc
Confidence 45679999999999999999998531110 111345555444433221
Q ss_pred ----------------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCC
Q 005478 343 ----------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (694)
Q Consensus 343 ----------------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip 406 (694)
...++|||||||+.|...+..++..+|++|||+|++.+. ..|+.+++.+++..++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~--------~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF--------KPQTQEALNILRMYKTP 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC--------CHhHHHHHHHHHHcCCC
Confidence 123899999999999999999999999999999999874 57999999999999998
Q ss_pred cEEEEEecccccc-cchh------------------hHhHHHHhhccchhcccccC----------CCceEEEeecccCC
Q 005478 407 QLIVAVNKMDAVQ-YSKD------------------RFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALENQ 457 (694)
Q Consensus 407 ~iIVVVNK~Dlv~-~~~e------------------~~~~i~~~l~~~l~~~g~~~----------~~v~~IpvSA~~G~ 457 (694)
+|+|+||+|+.. |... .+++....+...+...|+.. ..++++|+||++|+
T Consensus 124 -iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 -FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred -EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 999999999973 3110 01111111112233444432 35799999999999
Q ss_pred CcccCCCCccccccccCcchhhhhhc-----cC-CCCCCCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEe
Q 005478 458 NLVTAPDDGRLLSWYKGPCLLDAIDS-----LR-PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVL 530 (694)
Q Consensus 458 nI~e~~~~~~~~~wy~G~~LL~~L~~-----l~-~~~~~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~ 530 (694)
|+.+ |+++|.. ++ ......+.|++++|.+++... .|++ ++|+|.+|+|++||.|+++
T Consensus 203 Gide---------------Ll~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v-~t~~v~~G~l~~GD~iv~~ 266 (590)
T TIGR00491 203 GIPE---------------LLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMT-IDAVIYDGILRKGDTIAMA 266 (590)
T ss_pred ChhH---------------HHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceE-EEEEEEcCEEeCCCEEEEc
Confidence 9976 4444321 11 112345789999999999998 9999 8999999999999999999
Q ss_pred cCCe--eeEEEeeeecc------------cccceeccCCceeEEeccccccccccCcee
Q 005478 531 PSGE--VGTVHSIERDS------------QSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (694)
Q Consensus 531 P~~~--~~~VksI~~~~------------~~v~~A~aGd~V~l~L~gid~~~i~rG~VL 575 (694)
|... ..+|++|.... ..+.+|.|..-+-+...|++. ...|+.+
T Consensus 267 ~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 267 GSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred cCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 9874 67999998653 345566666555555445432 3446554
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-26 Score=254.31 Aligned_cols=235 Identities=24% Similarity=0.320 Sum_probs=183.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-- 342 (694)
+.+-|+++||+|||||||+..|-..... ..-..|||.+++...+.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va-------------------------------~~EaGGITQhIGA~~v~~~~~ 52 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA-------------------------------AGEAGGITQHIGAYQVPLDVI 52 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc-------------------------------cccCCceeeEeeeEEEEeccC
Confidence 5677999999999999999999742111 1112789999999999884
Q ss_pred -CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 343 -~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
...++|+|||||+-|..+..+|+..+|.+|||||+.+|. ++||.|.+..++..++| +||++||||+.+.+
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv--------~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n 123 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV--------MPQTIEAINHAKAAGVP-IVVAINKIDKPEAN 123 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc--------chhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence 468999999999999999999999999999999999984 89999999999999999 99999999999655
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc---cCCCCCCCCCCcccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLLMP 498 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~---l~~~~~~~~~pl~~~ 498 (694)
..+...-+.+..-..+.|+ ..+.|+|+||++|+|+.+ ||+.|.- ...-....+.+.+-.
T Consensus 124 p~~v~~el~~~gl~~E~~g---g~v~~VpvSA~tg~Gi~e---------------LL~~ill~aev~elka~~~~~a~gt 185 (509)
T COG0532 124 PDKVKQELQEYGLVPEEWG---GDVIFVPVSAKTGEGIDE---------------LLELILLLAEVLELKANPEGPARGT 185 (509)
T ss_pred HHHHHHHHHHcCCCHhhcC---CceEEEEeeccCCCCHHH---------------HHHHHHHHHHHHhhhcCCCCcceEE
Confidence 4443222222222223333 357899999999999977 7766522 222233446778888
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec-ccccceeccCCceeEE
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVS 560 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~ 560 (694)
|.++...+ .|.+ ++-.|..|+|++||.|.++. ...+|+.+... ..++..|.++..+.+.
T Consensus 186 viE~~~dkG~G~v-atviv~~GtL~~GD~iv~g~--~~g~I~t~v~~~~~~i~~a~ps~~v~i~ 246 (509)
T COG0532 186 VIEVKLDKGLGPV-ATVIVQDGTLKKGDIIVAGG--EYGRVRTMVDDLGKPIKEAGPSKPVEIL 246 (509)
T ss_pred EEEEEeccCCCce-EEEEEecCeEecCCEEEEcc--CCCceEEeehhcCCCccccCCCCCeEEe
Confidence 88888887 9999 89999999999999999984 45677777754 5678888877665543
No 59
>PRK13351 elongation factor G; Reviewed
Probab=99.95 E-value=1.3e-26 Score=272.62 Aligned_cols=273 Identities=29% Similarity=0.408 Sum_probs=207.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
...||+|+||+|+|||||+++|++..+.+..... ...+ .+.+|....|+++|+|+......+.+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~---------v~~~----~~~~d~~~~e~~r~~ti~~~~~~~~~~~~ 73 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE---------VEDG----TTVTDWMPQEQERGITIESAATSCDWDNH 73 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCcccccc---------ccCC----cccCCCCHHHHhcCCCcccceEEEEECCE
Confidence 4679999999999999999999987776543210 0011 24578888999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch-h
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK-D 423 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~-e 423 (694)
.++|||||||.+|...+..++..+|++|+|+|+..+. ..++..++..+...++| +|+|+||+|+...+. .
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~--------~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~ 144 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV--------QPQTETVWRQADRYGIP-RLIFINKMDRVGADLFK 144 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECCCCCCCCHHH
Confidence 9999999999999999999999999999999999874 46788888888889998 789999999875321 1
Q ss_pred hHhHHHHhhccchhc----------------------ccc----------------------------------------
Q 005478 424 RFDSIKVQLGTFLRS----------------------CGF---------------------------------------- 441 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~----------------------~g~---------------------------------------- 441 (694)
.++++.+.+...... ..|
T Consensus 145 ~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l 224 (687)
T PRK13351 145 VLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDEL 224 (687)
T ss_pred HHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 122222221110000 000
Q ss_pred ------------------------cCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhh-ccCCCCC-------
Q 005478 442 ------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR------- 489 (694)
Q Consensus 442 ------------------------~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~-~l~~~~~------- 489 (694)
...-+|++..||++|.|+.. ||++|. .+|.|..
T Consensus 225 le~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~---------------LLd~I~~~lPsP~~~~~~~~~ 289 (687)
T PRK13351 225 LELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEP---------------LLDAVVDYLPSPLEVPPPRGS 289 (687)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHH---------------HHHHHHHHCCChhhccccccc
Confidence 01134566678888888854 898884 4555531
Q ss_pred -----------CCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----ccccceecc
Q 005478 490 -----------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARA 553 (694)
Q Consensus 490 -----------~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~a 553 (694)
+.+.|+.+.|++++..+ .|.+ +++||.+|+|+.||+|++.+.+...+|..|... ..++++|.|
T Consensus 290 ~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~a 368 (687)
T PRK13351 290 KDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKL-TYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKA 368 (687)
T ss_pred CCCCCceeecCCCCCCeEEEEEEeeecCCCceE-EEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCC
Confidence 23568999999999888 7988 899999999999999999988777777776543 578999999
Q ss_pred CCceeEEeccccccccccCceeecCC
Q 005478 554 GDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 554 Gd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
||+++|. |++ ++..|++|+...
T Consensus 369 GdI~~i~--gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 369 GDIVAVA--GLK--ELETGDTLHDSA 390 (687)
T ss_pred CCEEEEE--Ccc--cCccCCEEeCCC
Confidence 9999775 654 456799998754
No 60
>PRK12740 elongation factor G; Reviewed
Probab=99.95 E-value=1.4e-26 Score=271.90 Aligned_cols=263 Identities=29% Similarity=0.395 Sum_probs=203.7
Q ss_pred EeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEEEeC
Q 005478 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (694)
Q Consensus 272 vG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~liDt 351 (694)
+||+|+|||||+++|++..+.+....- ...+ .+.+|....|+++|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~---------~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGE---------VEDG----TTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCcc---------ccCC----cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 699999999999999998887754210 0011 257899999999999999999999999999999999
Q ss_pred CCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHh
Q 005478 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQ 431 (694)
Q Consensus 352 PGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~ 431 (694)
|||.+|...+..++..+|++|+|+|+..+. ..++..++..+...++| +|+|+||+|+.... +..+.++
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~--------~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~---~~~~~~~ 135 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGV--------EPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD---FFRVLAQ 135 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCc--------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHHHHHH
Confidence 999999999999999999999999999874 46788888888889998 78899999987432 2222222
Q ss_pred hccchhc-------------------------------------------------------------------------
Q 005478 432 LGTFLRS------------------------------------------------------------------------- 438 (694)
Q Consensus 432 l~~~l~~------------------------------------------------------------------------- 438 (694)
+...+..
T Consensus 136 l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~ 215 (668)
T PRK12740 136 LQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEG 215 (668)
T ss_pred HHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC
Confidence 2221100
Q ss_pred cc--------------ccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhh-ccCCCCC--------------
Q 005478 439 CG--------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR-------------- 489 (694)
Q Consensus 439 ~g--------------~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~-~l~~~~~-------------- 489 (694)
.. ....-+|++..||++|.|+.. ||++|. .+|.|..
T Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsp~~~~~~~~~~~~~~~~ 280 (668)
T PRK12740 216 EELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQR---------------LLDAVVDYLPSPLEVPPVDGEDGEEGAE 280 (668)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH---------------HHHHHHHHCCChhhcccccCCCCccccc
Confidence 00 001235677789999999865 888884 4555531
Q ss_pred ---CCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee----cccccceeccCCceeEEe
Q 005478 490 ---EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSL 561 (694)
Q Consensus 490 ---~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L 561 (694)
+.+.|+.+.|++++..+ .|.+ +++||.+|+|++||+|++.+.++..+|..|.. ...++++|.|||+++|.
T Consensus 281 ~~~~~~~~l~a~v~k~~~~~~~G~i-~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~- 358 (668)
T PRK12740 281 LAPDPDGPLVALVFKTMDDPFVGKL-SLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA- 358 (668)
T ss_pred cccCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe-
Confidence 33568889999999888 7988 89999999999999999998776666655543 46799999999999987
Q ss_pred ccccccccccCceeecCC
Q 005478 562 QGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 562 ~gid~~~i~rG~VL~~~~ 579 (694)
|++ .++.|++|++..
T Consensus 359 -gl~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 359 -KLK--DAATGDTLCDKG 373 (668)
T ss_pred -ccC--ccCCCCEEeCCC
Confidence 664 588999998654
No 61
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.94 E-value=7.8e-27 Score=274.90 Aligned_cols=286 Identities=25% Similarity=0.365 Sum_probs=203.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEE----Ee
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY----FD 340 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~----~~ 340 (694)
...||+|+||+|+|||||+++|++..|.+.... .|. .+.+|..++|+++|+|+...... ++
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~ 82 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AGQ-----QLYLDFDEQEQERGITINAANVSMVHEYE 82 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CCc-----eeecCCCHHHHhhcchhhcccceeEEeec
Confidence 467999999999999999999999888775421 111 24678889999999999876543 67
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
+.++.++|||||||.+|...+..++..+|++|+|+|+..|+ ..++.+++..+...++| +|+|+||||+...
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~--------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 153 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV--------MPQTETVLRQALKENVK-PVLFINKVDRLIN 153 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC--------CccHHHHHHHHHHcCCC-EEEEEEChhcccc
Confidence 78899999999999999999999999999999999999874 56888999888888998 6899999998632
Q ss_pred c--------hhhHhHHHHhhccchhcc---------cccCCCceEEEeecccCCCcccC------CCCccc---------
Q 005478 421 S--------KDRFDSIKVQLGTFLRSC---------GFKDASLTWIPLSALENQNLVTA------PDDGRL--------- 468 (694)
Q Consensus 421 ~--------~e~~~~i~~~l~~~l~~~---------g~~~~~v~~IpvSA~~G~nI~e~------~~~~~~--------- 468 (694)
+ .++|..+...+..++... -+..........|++.+.++.-+ .....+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 233 (720)
T TIGR00490 154 ELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQ 233 (720)
T ss_pred hhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccH
Confidence 1 233333333333333221 01000111223344444222100 000000
Q ss_pred ---ccccc-Ccchhhhhh-ccCCCCC-------------------------CCCCCcccceEeEEecC-CCeEeeEEEEe
Q 005478 469 ---LSWYK-GPCLLDAID-SLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLE 517 (694)
Q Consensus 469 ---~~wy~-G~~LL~~L~-~l~~~~~-------------------------~~~~pl~~~I~~v~~~~-~G~V~v~GrV~ 517 (694)
..|+- -..||++|. .+|.|.. +.+.|+...|++++..+ .|.+ ++|||.
T Consensus 234 ~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i-a~~RV~ 312 (720)
T TIGR00490 234 KELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV-AVGRLY 312 (720)
T ss_pred HHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE-EEEEEE
Confidence 01210 124677763 3454421 12457888888888777 8998 899999
Q ss_pred eeeecCCCEEEEecCCeeeEEEeeeec----ccccceeccCCceeEEeccccccccccCceeecCC
Q 005478 518 AGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (694)
Q Consensus 518 sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~~~ 579 (694)
+|+|++||.|++.+.+...+|..|... ..+++.|.||++|+|. |++ ++.+|++||.++
T Consensus 313 sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 313 SGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVI--GLK--DAVAGETICTTV 374 (720)
T ss_pred eCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEE--Ccc--ccccCceeecCC
Confidence 999999999999999988999998764 4689999999999886 554 567899998765
No 62
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=8.1e-27 Score=247.27 Aligned_cols=276 Identities=27% Similarity=0.365 Sum_probs=205.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+....||+-|||||||||...|+..-|.|......+ ++++-.+ ...|...-|++|||++..+...|++.++
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~~~-a~SDWM~iEkqRGISVtsSVMqF~Y~~~ 81 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSGKH-AKSDWMEIEKQRGISVTSSVMQFDYADC 81 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCCcc-cccHHHHHHHhcCceEEeeEEEeccCCe
Confidence 456799999999999999999998777775433221 2222211 2357788999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch-h
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK-D 423 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~-e 423 (694)
.++|+|||||+||...+.+.+..+|.||.||||..|+ .+||+..+..++..++| ||-+|||||+...++ +
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi--------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~E 152 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI--------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLE 152 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccCc--------cHHHHHHHHHHhhcCCc-eEEEeeccccccCChHH
Confidence 9999999999999999999999999999999999995 68999999999999999 999999999875333 3
Q ss_pred hHhHHHHhhccchhccccc-------------------------------------------------------------
Q 005478 424 RFDSIKVQLGTFLRSCGFK------------------------------------------------------------- 442 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~------------------------------------------------------------- 442 (694)
-++++.+.|.-....+.|.
T Consensus 153 LLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL 232 (528)
T COG4108 153 LLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELEL 232 (528)
T ss_pred HHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHH
Confidence 3444444333222111111
Q ss_pred ---------------CCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCCCCCC--C--------CC---C
Q 005478 443 ---------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPRE--F--------SK---P 494 (694)
Q Consensus 443 ---------------~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~~~~~--~--------~~---p 494 (694)
....|+++-||+++.|+.. ||+++....|++.. . +. .
T Consensus 233 ~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~---------------~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsG 297 (528)
T COG4108 233 VQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDH---------------FLDALVDWAPSPRARQADTREVEPTEDKFSG 297 (528)
T ss_pred HHhhccccCHHHHhcCCccceEehhhhhccCHHH---------------HHHHHHhhCCCCCcccCCcCcccCCCCccce
Confidence 1233455555555555533 78887555433321 1 11 2
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee----cccccceeccCCceeEEecccccccc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRV 569 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i 569 (694)
|.|.|+--...+ ..++ ++-||.||.+..|+++.....|+.+++..-+. .++.++.|+|||+|+|.-.| .+
T Consensus 298 FVFKIQANMDp~HRDRI-AFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~ 372 (528)
T COG4108 298 FVFKIQANMDPKHRDRI-AFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TI 372 (528)
T ss_pred EEEEEEcCCCcccccce-eEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC----ce
Confidence 344444444444 7788 89999999999999999999999988887664 46889999999999997444 48
Q ss_pred ccCceeecC
Q 005478 570 MSGGVLCHP 578 (694)
Q Consensus 570 ~rG~VL~~~ 578 (694)
+.||+|+..
T Consensus 373 ~IGDT~t~G 381 (528)
T COG4108 373 QIGDTFTEG 381 (528)
T ss_pred eecceeecC
Confidence 889999864
No 63
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.93 E-value=4.1e-25 Score=263.98 Aligned_cols=289 Identities=23% Similarity=0.358 Sum_probs=198.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC-
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~- 342 (694)
....||+|+||+|||||||+++|++..+.|.... .+ ..+.+|...+|+++|+|+..+...+.+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~------------~g---~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 81 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------------AG---DVRMTDTRADEAERGITIKSTGISLYYEM 81 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc------------CC---ceeeccCcHHHHHhCCceecceeEEEeec
Confidence 3577999999999999999999999988876431 11 2456899999999999999776666552
Q ss_pred ---------------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCc
Q 005478 343 ---------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (694)
Q Consensus 343 ---------------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~ 407 (694)
++.++|+|||||.+|..++..+++.+|++|+||||..|+ ..||+.++..+...++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv--------~~~t~~~~~~~~~~~~p- 152 (843)
T PLN00116 82 TDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--------CVQTETVLRQALGERIR- 152 (843)
T ss_pred ccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCC--------cccHHHHHHHHHHCCCC-
Confidence 678999999999999999999999999999999999985 57999999999999999
Q ss_pred EEEEEecccccc----cch----hhHhHHHHhhccchhccc--------ccCCCceEEEeecccCCCcccC---------
Q 005478 408 LIVAVNKMDAVQ----YSK----DRFDSIKVQLGTFLRSCG--------FKDASLTWIPLSALENQNLVTA--------- 462 (694)
Q Consensus 408 iIVVVNK~Dlv~----~~~----e~~~~i~~~l~~~l~~~g--------~~~~~v~~IpvSA~~G~nI~e~--------- 462 (694)
+|+++||||+.- .+. ..++.+.++++.++..++ +.+..-.+++.|+..|..+.-+
T Consensus 153 ~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~ 232 (843)
T PLN00116 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 232 (843)
T ss_pred EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHH
Confidence 799999999872 111 456666677762222111 1111111233333222000000
Q ss_pred ----------------------------C-------------------------------------CC------------
Q 005478 463 ----------------------------P-------------------------------------DD------------ 465 (694)
Q Consensus 463 ----------------------------~-------------------------------------~~------------ 465 (694)
. ..
T Consensus 233 ~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~ 312 (843)
T PLN00116 233 FGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL 312 (843)
T ss_pred hCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh
Confidence 0 00
Q ss_pred -------ccccccccC-cchhhhhh-ccCCCCC-------------------------CCCCCcccceEeEEecC-CCeE
Q 005478 466 -------GRLLSWYKG-PCLLDAID-SLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQV 510 (694)
Q Consensus 466 -------~~~~~wy~G-~~LL~~L~-~l~~~~~-------------------------~~~~pl~~~I~~v~~~~-~G~V 510 (694)
..+.+||-| ..||++|. .+|.|.. +.+.|+...|+.++..+ .|..
T Consensus 313 ~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~ 392 (843)
T PLN00116 313 MGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRF 392 (843)
T ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeE
Confidence 002346655 45777773 3555420 11347777788877666 6773
Q ss_pred eeEEEEeeeeecCCCEEEEecCC----ee-----eEEEeeee----cccccceeccCCceeEEeccccccccccCceeec
Q 005478 511 SACGKLEAGALRSGLKVLVLPSG----EV-----GTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCH 577 (694)
Q Consensus 511 ~v~GrV~sG~L~~Gd~v~i~P~~----~~-----~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~~ 577 (694)
.+++||.+|+|+.||.|++...+ .. .+|..|.. ...++++|.||++++|. |++. .+..|++|++
T Consensus 393 l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--gl~~-~~~~gdTL~~ 469 (843)
T PLN00116 393 FAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--GLDQ-FITKNATLTN 469 (843)
T ss_pred EEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--eecc-cccCCceecC
Confidence 38999999999999999864322 11 24444443 24689999999999887 5532 2345889976
Q ss_pred CC
Q 005478 578 PD 579 (694)
Q Consensus 578 ~~ 579 (694)
..
T Consensus 470 ~~ 471 (843)
T PLN00116 470 EK 471 (843)
T ss_pred Cc
Confidence 54
No 64
>PTZ00416 elongation factor 2; Provisional
Probab=99.92 E-value=2.3e-24 Score=257.07 Aligned_cols=150 Identities=27% Similarity=0.391 Sum_probs=123.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC-
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~- 342 (694)
....||+|+||+|||||||+++|++..+.+.... .| . ++.+|..++|+++|+|++.+...+.+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~g--~---~~~~D~~~~E~~rgiti~~~~~~~~~~~ 81 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------AG--D---ARFTDTRADEQERGITIKSTGISLYYEH 81 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CC--c---eeecccchhhHhhcceeeccceEEEeec
Confidence 3466999999999999999999999888775431 12 1 356899999999999999876666654
Q ss_pred ---------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005478 343 ---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 343 ---------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN 413 (694)
++.++|+|||||.+|...+..++..+|++|+|||+..|+ ..|++.++..+...++| +|+++|
T Consensus 82 ~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~--------~~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 82 DLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV--------CVQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred ccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCc--------CccHHHHHHHHHHcCCC-EEEEEE
Confidence 678999999999999999999999999999999999885 57999999999999998 899999
Q ss_pred ccccc----ccc----hhhHhHHHHhhccchh
Q 005478 414 KMDAV----QYS----KDRFDSIKVQLGTFLR 437 (694)
Q Consensus 414 K~Dlv----~~~----~e~~~~i~~~l~~~l~ 437 (694)
|||+. ..+ ...++.+.++++..+.
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99987 211 1345666677766554
No 65
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-24 Score=237.12 Aligned_cols=271 Identities=30% Similarity=0.459 Sum_probs=211.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+..||+|+.|.++|||||..++++-.|.+..-.. ..++ ...+|....||++|||+..+..++.|.++
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~e--------v~~~-----~a~md~m~~er~rgITiqSAAt~~~w~~~ 104 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGE--------VRGG-----GATMDSMELERQRGITIQSAATYFTWRDY 104 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccc--------cccC-----ceeeehHHHHHhcCceeeeceeeeeeccc
Confidence 5678999999999999999999988776542210 1122 34689999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
+++|||||||.||.-...++++..|++|+|+|+..|+ +.||....+.++..++| .|..+||||+...+..+
T Consensus 105 ~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV--------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~ 175 (721)
T KOG0465|consen 105 RINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV--------ESQTETVWRQMKRYNVP-RICFINKMDRMGASPFR 175 (721)
T ss_pred eeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce--------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHH
Confidence 9999999999999999999999999999999999885 78999999999999999 58899999987543211
Q ss_pred -HhHHH--------------------------------------------------------------------------
Q 005478 425 -FDSIK-------------------------------------------------------------------------- 429 (694)
Q Consensus 425 -~~~i~-------------------------------------------------------------------------- 429 (694)
++.+.
T Consensus 176 ~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~ 255 (721)
T KOG0465|consen 176 TLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLA 255 (721)
T ss_pred HHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 11111
Q ss_pred -----------HhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh-hccCCCCC--------
Q 005478 430 -----------VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR-------- 489 (694)
Q Consensus 430 -----------~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L-~~l~~~~~-------- 489 (694)
++|...++..-+....+|++.-||+.+.|+.. ||+++ +.||.|..
T Consensus 256 e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQP---------------lLDAVvdYLPsP~Ev~n~a~~k 320 (721)
T KOG0465|consen 256 EMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQP---------------LLDAVVDYLPSPSEVENYALNK 320 (721)
T ss_pred HHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcch---------------HHHHHHHhCCChhhhccccccc
Confidence 11111112222333567788889999999843 88886 55654421
Q ss_pred ------------CCCC-CcccceEeEEecCCCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----ccccceec
Q 005478 490 ------------EFSK-PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVAR 552 (694)
Q Consensus 490 ------------~~~~-pl~~~I~~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~ 552 (694)
..++ ||....+.+.....|+. .+-||.+|+|+.||.|+....+++++|..+-+. .++++++.
T Consensus 321 e~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqL-TyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~ 399 (721)
T KOG0465|consen 321 ETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQL-TYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVL 399 (721)
T ss_pred CCCCccceEeccCCCCCceeeeEEEeeecCccce-EEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhh
Confidence 0122 77777777766668888 789999999999999999999999988776542 47999999
Q ss_pred cCCceeEEeccccccccccCceeecC
Q 005478 553 AGDNIAVSLQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 553 aGd~V~l~L~gid~~~i~rG~VL~~~ 578 (694)
|||++++. |++ ...||++.+.
T Consensus 400 AG~I~alf--Gid---casGDTftd~ 420 (721)
T KOG0465|consen 400 AGDICALF--GID---CASGDTFTDK 420 (721)
T ss_pred ccceeeee--ccc---cccCceeccC
Confidence 99999887 884 5569999986
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.91 E-value=4.6e-24 Score=217.15 Aligned_cols=190 Identities=28% Similarity=0.389 Sum_probs=146.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC----
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~---- 342 (694)
.||+|+||+++|||||+++|++..+.+..+. .+. ++.+|...+|+++|+|+..+...+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~------------~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL------------AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc------------CCc---eeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 3799999999999999999999888765442 111 357899999999999998775544433
Q ss_pred ------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 343 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 343 ------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
++.++|||||||.+|...+..++..+|++|||||+..|. ..++++++..+...++| +|+|+||||
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~--------~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGV--------CVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 788999999999999999999999999999999999874 57899999999888998 899999999
Q ss_pred cc--------ccchhhHhHHHHhhccchhccc-------------ccCCCceEEEeecccCCCcccCCCCccccccccCc
Q 005478 417 AV--------QYSKDRFDSIKVQLGTFLRSCG-------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGP 475 (694)
Q Consensus 417 lv--------~~~~e~~~~i~~~l~~~l~~~g-------------~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~ 475 (694)
+. .+...++.++.+++..+++.+. +.+..-.+++.||+.|..+.. . +|-.-.
T Consensus 137 ~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~-~------~f~~~~ 209 (222)
T cd01885 137 RLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI-I------KFARIY 209 (222)
T ss_pred cchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEecc-c------cccchH
Confidence 75 1234567788888888776652 111111268889999988743 1 222223
Q ss_pred chhhhh-hccCCC
Q 005478 476 CLLDAI-DSLRPP 487 (694)
Q Consensus 476 ~LL~~L-~~l~~~ 487 (694)
.||+.+ +.+|+|
T Consensus 210 ~~~~~~~~~~~~p 222 (222)
T cd01885 210 AVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHhhCCCC
Confidence 577776 556654
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=2.4e-23 Score=209.41 Aligned_cols=168 Identities=32% Similarity=0.416 Sum_probs=129.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC----
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~---- 342 (694)
++|+++||+|+|||||+.+|+. ..+|....|.++|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~----------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG----------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC----------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 4799999999999999999962 12466677888888888776665543
Q ss_pred -----------------------C------eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHH
Q 005478 343 -----------------------N------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT 393 (694)
Q Consensus 343 -----------------------~------~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt 393 (694)
+ ..++|||||||.+|...++.++..+|++|+|||+..+. ...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t 125 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC-------PQPQT 125 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC-------CCcch
Confidence 3 78999999999999999999999999999999998742 13578
Q ss_pred HHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCcccccccc
Q 005478 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK 473 (694)
Q Consensus 394 ~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~ 473 (694)
.+++..+...+++++|||+||+|+.. ...+....+.+..+++.... ..++++++||++|+|+.+
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~--~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~------------ 189 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVK--EEQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDV------------ 189 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccC--HHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHH------------
Confidence 88888888888877999999999974 33344444555555543322 246789999999999976
Q ss_pred Ccchhhhhhc-cCCCC
Q 005478 474 GPCLLDAIDS-LRPPP 488 (694)
Q Consensus 474 G~~LL~~L~~-l~~~~ 488 (694)
|++.|.. ++.|+
T Consensus 190 ---L~~~l~~~l~~~~ 202 (203)
T cd01888 190 ---LLEYIVKKIPTPP 202 (203)
T ss_pred ---HHHHHHHhCCCCC
Confidence 7787743 55544
No 68
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.90 E-value=3.5e-23 Score=211.35 Aligned_cols=177 Identities=27% Similarity=0.391 Sum_probs=137.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE-----------
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV----------- 336 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~----------- 336 (694)
+|+++|++++|||||+++|+.. ... .+++ .....++.+.+|.++|+|+.+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~--~~~-------------~~~~--~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~ 63 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG--ELD-------------NGRG--KARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV 63 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CcC-------------CCCC--eEEeehhhhhhhhhcCchhhhhhhhcccCCCCce
Confidence 4899999999999999999842 111 1111 11234677888888888875433
Q ss_pred -------------EEEecCCeEEEEEeCCCccchHHHHHhhcc--cCCEEEEEEecCCCccccccccchhHHHHHHHHHH
Q 005478 337 -------------AYFDSKNYHVVVLDSPGHKDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR 401 (694)
Q Consensus 337 -------------~~~~~~~~~v~liDtPGh~~f~~~~i~~~~--~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~ 401 (694)
..++..++.++|+|||||++|.+.++.++. .+|++++|||+..+. ..++++++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--------~~~d~~~l~~l~ 135 (224)
T cd04165 64 VNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--------IGMTKEHLGLAL 135 (224)
T ss_pred ecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--------cHHHHHHHHHHH
Confidence 123345678999999999999999999986 799999999999874 579999999999
Q ss_pred HcCCCcEEEEEecccccccchhhHhHHHHhhccchhccccc---------------------CCCceEEEeecccCCCcc
Q 005478 402 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK---------------------DASLTWIPLSALENQNLV 460 (694)
Q Consensus 402 ~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~---------------------~~~v~~IpvSA~~G~nI~ 460 (694)
.+++| +|+|+||+|+++ +.++....+++..+|+..|+. ...+|++++||++|+|+.
T Consensus 136 ~~~ip-~ivvvNK~D~~~--~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~ 212 (224)
T cd04165 136 ALNIP-VFVVVTKIDLAP--ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLD 212 (224)
T ss_pred HcCCC-EEEEEECccccC--HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHH
Confidence 99999 899999999874 566777777777777654433 124589999999999997
Q ss_pred cCCCCccccccccCcchhhhhhccCCC
Q 005478 461 TAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (694)
Q Consensus 461 e~~~~~~~~~wy~G~~LL~~L~~l~~~ 487 (694)
+ |++.|..+|++
T Consensus 213 ~---------------L~~~L~~lp~~ 224 (224)
T cd04165 213 L---------------LHAFLNLLPLR 224 (224)
T ss_pred H---------------HHHHHHhcCCC
Confidence 6 88888887753
No 69
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.90 E-value=1.7e-22 Score=241.15 Aligned_cols=223 Identities=22% Similarity=0.342 Sum_probs=167.8
Q ss_pred ccCeEEEEEEEEEecCC------------------eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCcccccccc
Q 005478 327 ERGITMTVAVAYFDSKN------------------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388 (694)
Q Consensus 327 ~~GiTi~~~~~~~~~~~------------------~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~ 388 (694)
..|||++++...+..+. ..++|||||||..|...+..++..+|++|||+|++.|.
T Consensus 491 aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi------- 563 (1049)
T PRK14845 491 AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF------- 563 (1049)
T ss_pred CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC-------
Confidence 48999999988877542 12899999999999988888899999999999999873
Q ss_pred chhHHHHHHHHHHHcCCCcEEEEEeccccc-ccch---------------hhHhHHHHh---hccchhcccccC------
Q 005478 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAV-QYSK---------------DRFDSIKVQ---LGTFLRSCGFKD------ 443 (694)
Q Consensus 389 ~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv-~~~~---------------e~~~~i~~~---l~~~l~~~g~~~------ 443 (694)
+.|+.+++.++...++| +|+|+||+|+. .|.. ..++++... +...|...|+..
T Consensus 564 -~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~ 641 (1049)
T PRK14845 564 -KPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRV 641 (1049)
T ss_pred -CHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhh
Confidence 57999999999999998 99999999996 4431 112222222 222245555542
Q ss_pred ----CCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCC------CCCCCCCCcccceEeEEecC-CCeEee
Q 005478 444 ----ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP------PPREFSKPLLMPICDVLKSQ-HGQVSA 512 (694)
Q Consensus 444 ----~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~------~~~~~~~pl~~~I~~v~~~~-~G~V~v 512 (694)
..+++||+||++|+|+.+ |+++|..+.. .....+.|++++|.+++..+ .|+| +
T Consensus 642 ~d~~~~v~iVpVSA~tGeGId~---------------Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~v-v 705 (1049)
T PRK14845 642 QDFTRTVAIVPVSAKTGEGIPE---------------LLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTT-I 705 (1049)
T ss_pred hhcCCCceEEEEEcCCCCCHHH---------------HHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeE-E
Confidence 367999999999999976 5555533221 22345679999999999998 9999 9
Q ss_pred EEEEeeeeecCCCEEEEecCCe--eeEEEeeeec------------ccccceeccCCceeEEeccccccccccCceee
Q 005478 513 CGKLEAGALRSGLKVLVLPSGE--VGTVHSIERD------------SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (694)
Q Consensus 513 ~GrV~sG~L~~Gd~v~i~P~~~--~~~VksI~~~------------~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~ 576 (694)
+|.|.+|+|++||.|+++|.+. ..+|++|... ...++.|.|+.-|.|...|++ .+..|+-+.
T Consensus 706 t~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~--~~~aG~~~~ 781 (1049)
T PRK14845 706 DAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLE--EVLAGSPIR 781 (1049)
T ss_pred EEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcc--ccCCCCeEE
Confidence 9999999999999999999865 6899999742 246778888877777544543 234565543
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.1e-22 Score=200.38 Aligned_cols=171 Identities=29% Similarity=0.473 Sum_probs=130.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC----
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~---- 342 (694)
+||+++|++|+|||||+++|+...+ .+.++...+++++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 5799999999999999999984311 124567778889999999887766654
Q ss_pred ----------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005478 343 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (694)
Q Consensus 343 ----------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVV 412 (694)
++.++|||||||..|.+.++.++..+|++|+|+|+..+. ..++.+++.++..+++| +|+|+
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~ 127 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI--------QTQTAECLVIGEILCKK-LIVVL 127 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEE
Confidence 778999999999999999988889999999999998763 35667777777778887 89999
Q ss_pred ecccccccc--hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc-cCCC
Q 005478 413 NKMDAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP 487 (694)
Q Consensus 413 NK~Dlv~~~--~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~~~ 487 (694)
||+|+.... +..++++.+.+...+...++ ..++++++||++|+|+.+ |++.|.. +++|
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~---------------L~~~l~~~~~~~ 188 (192)
T cd01889 128 NKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAE---------------LGKDLNNLIVLP 188 (192)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHH---------------HHHHHHhccccc
Confidence 999997421 12234444444444433333 347899999999999976 8888854 4444
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=6e-22 Score=197.45 Aligned_cols=170 Identities=27% Similarity=0.344 Sum_probs=131.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
..+|+++|++|+|||||+++|++..+.+...... -.+.++....|+.+|+|+......+...+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV---------------EERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc---------------cccccccchhHHhcccccccceeEEEECCEE
Confidence 3589999999999999999999765554332110 0144677778889999998888888889999
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhH
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~ 425 (694)
+.|||||||.+|...+..++..+|++|+|+|+..+. ..++.+++..+...++| +++|+||+|+.. .++
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~--------~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~---~~~ 134 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP--------MPQTRFVLKKALELGLK-PIVVINKIDRPD---ARP 134 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEEECCCCCC---CCH
Confidence 999999999999999999999999999999998763 34666777777778888 899999999974 233
Q ss_pred hHHHHhhccchhcccccC--CCceEEEeecccCCCcccC
Q 005478 426 DSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 426 ~~i~~~l~~~l~~~g~~~--~~v~~IpvSA~~G~nI~e~ 462 (694)
+...+++..++..++... ..++++++||++|.|+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 344555555554443321 2468899999999999763
No 72
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=2.7e-21 Score=185.36 Aligned_cols=154 Identities=31% Similarity=0.513 Sum_probs=118.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC-CeEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHV 346 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-~~~v 346 (694)
+|+++|++|+|||||+++|++.. .+....+..+++|++..+..+... +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcEE
Confidence 69999999999999999998421 112233455788888887777765 7899
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
.||||||+++|...+..++..+|++|+|+|++.+. ..++.+++.++...+.+++|+|+||+|+.. ...+.
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~--------~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~--~~~~~ 123 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI--------MPQTREHLEILELLGIKRGLVVLTKADLVD--EDWLE 123 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCc--------cHhHHHHHHHHHHhCCCcEEEEEECccccC--HHHHH
Confidence 99999999999988888899999999999998753 357777777777778745999999999974 22333
Q ss_pred HHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 427 ~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+++...++..++ ...+++++||++|+|+.+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 124 LVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred HHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHH
Confidence 444555555544332 236789999999999976
No 73
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.87 E-value=1.2e-21 Score=205.39 Aligned_cols=160 Identities=29% Similarity=0.404 Sum_probs=130.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+++||+|+|||||+++|++..|.+..... ...+ .+.+|..++|+++|+|++.....|.+++..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~---------v~~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGE---------VHGG----GATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccccc---------ccCC----ccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 6999999999999999999988887643210 0011 45789999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~ 427 (694)
|||||||.+|...+..++..+|++|+|||+..+. ..++.+++..+...++| +|+++||+|+...+ ++.
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~--------~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~---~~~ 135 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV--------EPQTETVWRQADRYNVP-RIAFVNKMDRTGAD---FFR 135 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHH
Confidence 9999999999999999999999999999999874 57899999999999999 78999999997533 334
Q ss_pred HHHhhccchhcccccCCCceEEEeecccC
Q 005478 428 IKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (694)
Q Consensus 428 i~~~l~~~l~~~g~~~~~v~~IpvSA~~G 456 (694)
+.+++...+....+ ..++|+|+..+
T Consensus 136 ~~~~l~~~l~~~~~----~~~~Pisa~~~ 160 (270)
T cd01886 136 VVEQIREKLGANPV----PLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHHhCCCce----EEEeccccCCC
Confidence 55555555533222 34689998754
No 74
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.87 E-value=1.2e-21 Score=177.49 Aligned_cols=106 Identities=36% Similarity=0.610 Sum_probs=101.2
Q ss_pred eeeEEEEEEEEecCC-CCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeec
Q 005478 584 IATHLELKVLVLDFA-PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEE 662 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~-~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~ 662 (694)
+++.|+|+|+||+++ .+|.+||++.||+|+.+++|+|.+|.+++|+++|+..+++|++|.+|+.|.|+|++.+|+|+|+
T Consensus 2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~ 81 (108)
T cd03704 2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK 81 (108)
T ss_pred cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence 367899999999999 8899999999999999999999999999999999888889999999999999999999999999
Q ss_pred ccccCCcceEEEEeCCcEEEEEEEEee
Q 005478 663 FSNCRALGRAFLRSSGRTIAVGIVTRI 689 (694)
Q Consensus 663 ~~~~~~lgrfiLr~~g~Tvg~G~V~~v 689 (694)
|+++++||||+||++|+|||+|+|+++
T Consensus 82 ~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 82 FEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred cccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 999999999999999999999999864
No 75
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=3.4e-21 Score=188.35 Aligned_cols=162 Identities=30% Similarity=0.467 Sum_probs=120.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE-----ec
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-----DS 341 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~-----~~ 341 (694)
.||+++|++++|||||+++|++..+.+..+.+. .+.++....++.+|+|.......+ +.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMK----------------EQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCc----------------eEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 379999999999999999999877766432211 245677778888999987655444 34
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
.+..++|||||||.+|...+..++..+|++|+|+|+..+. ..++.+++..+...++| +|+|+||+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~--------~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~- 134 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV--------EAQTLANFYLALENNLE-IIPVINKIDLPSA- 134 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc--------cHhhHHHHHHHHHcCCC-EEEEEECCCCCcC-
Confidence 5678999999999999999999999999999999998763 34566666666667888 8999999998642
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
......+++... +++. ...++++||++|+|+.+
T Consensus 135 --~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~ 167 (179)
T cd01890 135 --DPERVKQQIEDV---LGLD--PSEAILVSAKTGLGVED 167 (179)
T ss_pred --CHHHHHHHHHHH---hCCC--cccEEEeeccCCCCHHH
Confidence 122223333322 2331 13579999999999976
No 76
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.5e-21 Score=208.61 Aligned_cols=304 Identities=24% Similarity=0.350 Sum_probs=214.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE----
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---- 339 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~---- 339 (694)
....|+.++.|+++|||||...|....+.|.... .|. +.++|..+.|.+|||||......+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aGe-----~Rf~DtRkDEQeR~iTIKStAISl~~e~ 81 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AGE-----TRFTDTRKDEQERGITIKSTAISLFFEM 81 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecc----------cCC-----ccccccccchhhcceEeeeeeeeehhhh
Confidence 3567889999999999999999998888776332 222 246899999999999997665432
Q ss_pred ------------ecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCc
Q 005478 340 ------------DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (694)
Q Consensus 340 ------------~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~ 407 (694)
+.+++.++|||.|||.+|..+...+++..|++++|||+-.|+. -||...+..+..-.+++
T Consensus 82 ~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC--------VQTETVLrQA~~ERIkP 153 (842)
T KOG0469|consen 82 SDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC--------VQTETVLRQAIAERIKP 153 (842)
T ss_pred hHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE--------echHHHHHHHHHhhccc
Confidence 2346889999999999999999999999999999999999863 59999999888888884
Q ss_pred EEEEEeccccc----ccchh----hHhHHHHhhccchhcccccC-CCc-------eEEEeecccCCCcccCC--------
Q 005478 408 LIVAVNKMDAV----QYSKD----RFDSIKVQLGTFLRSCGFKD-ASL-------TWIPLSALENQNLVTAP-------- 463 (694)
Q Consensus 408 iIVVVNK~Dlv----~~~~e----~~~~i~~~l~~~l~~~g~~~-~~v-------~~IpvSA~~G~nI~e~~-------- 463 (694)
++++||||++ ..+++ .|+.+.+.+...+...+..+ ..+ .+-+.|.+.|+++..+.
T Consensus 154 -vlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~K 232 (842)
T KOG0469|consen 154 -VLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKK 232 (842)
T ss_pred -eEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHH
Confidence 7899999965 23333 24455555555555554411 111 23346777776653211
Q ss_pred -----------------CCccccc--------------------------------------------------------
Q 005478 464 -----------------DDGRLLS-------------------------------------------------------- 470 (694)
Q Consensus 464 -----------------~~~~~~~-------------------------------------------------------- 470 (694)
.+....+
T Consensus 233 F~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~k 312 (842)
T KOG0469|consen 233 FGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEK 312 (842)
T ss_pred hCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccc
Confidence 0000011
Q ss_pred --------------cc-cCcchhhhh-hccCCCC-------------------------CCCCCCcccceEeEEecC-CC
Q 005478 471 --------------WY-KGPCLLDAI-DSLRPPP-------------------------REFSKPLLMPICDVLKSQ-HG 508 (694)
Q Consensus 471 --------------wy-~G~~LL~~L-~~l~~~~-------------------------~~~~~pl~~~I~~v~~~~-~G 508 (694)
|. .+.+||+.| .++|.|- .+.+.|+.|.|....... .|
T Consensus 313 d~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkg 392 (842)
T KOG0469|consen 313 DLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKG 392 (842)
T ss_pred cccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCc
Confidence 21 134567766 4555442 245779999999998887 89
Q ss_pred eEeeEEEEeeeeecCCCEEEEecCC-----e-eeEEEeeee-------cccccceeccCCceeEEeccccccccccCcee
Q 005478 509 QVSACGKLEAGALRSGLKVLVLPSG-----E-VGTVHSIER-------DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (694)
Q Consensus 509 ~V~v~GrV~sG~L~~Gd~v~i~P~~-----~-~~~VksI~~-------~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL 575 (694)
+..++|||++|++..|++++|+.-+ + ..-+|+||+ .-++++-..||.+++|. |+|..-++.|.+-
T Consensus 393 RFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv--GvDqfLvKtGTiT 470 (842)
T KOG0469|consen 393 RFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV--GVDQFLVKTGTIT 470 (842)
T ss_pred eEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe--ehhHhhhccCcee
Confidence 9989999999999999999997432 1 234556554 45799999999999987 9988777777765
Q ss_pred ecCCCCcceeeEEEEEEE
Q 005478 576 CHPDFPVAIATHLELKVL 593 (694)
Q Consensus 576 ~~~~~~~~~~~~f~a~v~ 593 (694)
......-.....|....+
T Consensus 471 t~e~AHNmrvMKFSVSPV 488 (842)
T KOG0469|consen 471 TSEAAHNMRVMKFSVSPV 488 (842)
T ss_pred ehhhhccceEEEeeccce
Confidence 544333333455655443
No 77
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.86 E-value=4.9e-21 Score=193.99 Aligned_cols=170 Identities=24% Similarity=0.323 Sum_probs=131.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-----C
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-----K 342 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-----~ 342 (694)
+|+|+||+|+|||||+++|++..+.+..+ ++.....++.+|...+|+++|+|+......+.+ .
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~ 69 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGK 69 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCC
Confidence 69999999999999999999887766432 233444566789999999999999877666543 3
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc---
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--- 419 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~--- 419 (694)
...++|||||||.+|...+..++..+|++|+|+|+..+. ..++.+++..+...++| +|+|+||+|++.
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~--------~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV--------TSNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 478999999999999999999999999999999998763 34666777777777877 899999999861
Q ss_pred -----cchhhHhHHHHhhccchhcccccCCCceE-------EEeecccCCCc
Q 005478 420 -----YSKDRFDSIKVQLGTFLRSCGFKDASLTW-------IPLSALENQNL 459 (694)
Q Consensus 420 -----~~~e~~~~i~~~l~~~l~~~g~~~~~v~~-------IpvSA~~G~nI 459 (694)
....++.++.+++..+++.+++++ .+.| +..||+.++++
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~-~~~~~p~~~nv~~~s~~~~w~~ 191 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL-SFLFSPENGNVCFASSKFGFCF 191 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEeccCCCeEEEEecCCCeEE
Confidence 223567778888888888777643 2334 44565555554
No 78
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.86 E-value=5.5e-21 Score=172.72 Aligned_cols=106 Identities=46% Similarity=0.749 Sum_probs=101.7
Q ss_pred eeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 005478 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 663 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~ 663 (694)
.++.|+|+++||+++.||.+|+++.+|+|+..++|+|.+|.+.+|.+|++..+++|++|++|+.|.|+|.+++|+|+|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 81 (107)
T cd04093 2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF 81 (107)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 46789999999998999999999999999999999999999999999998877889999999999999999999999999
Q ss_pred cccCCcceEEEEeCCcEEEEEEEEee
Q 005478 664 SNCRALGRAFLRSSGRTIAVGIVTRI 689 (694)
Q Consensus 664 ~~~~~lgrfiLr~~g~Tvg~G~V~~v 689 (694)
.+++.+|||+||++|+|||+|+|++|
T Consensus 82 ~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 82 KDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred ccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99999999999999999999999875
No 79
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.86 E-value=6.5e-21 Score=196.30 Aligned_cols=143 Identities=37% Similarity=0.528 Sum_probs=117.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+++||+|+|||||+++|++..+.+..... .. .+ .+.+|...+|+++|+|+......+.+++..++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~-------v~--~~----~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGS-------VD--KG----TTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccc-------cc--CC----cccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 5899999999999999999998877653210 00 11 14578888999999999999999999999999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc-hhhHh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS-KDRFD 426 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~-~e~~~ 426 (694)
|||||||.+|...+..+++.+|++|+|+|+..+. ..++.+++.++...++| +|+++||+|+...+ ...++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~--------~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~~~~~~ 138 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV--------QAQTRILWRLLRKLNIP-TIIFVNKIDRAGADLEKVYQ 138 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccccCCCHHHHHH
Confidence 9999999999999999999999999999999874 46888999999999999 78999999987532 23344
Q ss_pred HHHHhh
Q 005478 427 SIKVQL 432 (694)
Q Consensus 427 ~i~~~l 432 (694)
++++.+
T Consensus 139 ~i~~~~ 144 (237)
T cd04168 139 EIKEKL 144 (237)
T ss_pred HHHHHH
Confidence 444433
No 80
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.84 E-value=6.1e-20 Score=180.05 Aligned_cols=168 Identities=39% Similarity=0.605 Sum_probs=130.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|.+|+|||||+++|++.......... .....++....+..+|+|+......++..+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGT---------------VEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCc---------------eecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 4899999999999999999976554332211 1113455666788889999888888888889999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~ 427 (694)
||||||+.+|...+..++..+|++++|+|+..+. ..+..+.+..+...+.| +++|+||+|+.. ++.+..
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~--~~~~~~ 134 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV--------QPQTREHLRIAREGGLP-IIVAINKIDRVG--EEDLEE 134 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC--------cHHHHHHHHHHHHCCCC-eEEEEECCCCcc--hhcHHH
Confidence 9999999999998989999999999999998763 34667777777777777 999999999985 344455
Q ss_pred HHHhhccchhcccc---------cCCCceEEEeecccCCCccc
Q 005478 428 IKVQLGTFLRSCGF---------KDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 428 i~~~l~~~l~~~g~---------~~~~v~~IpvSA~~G~nI~e 461 (694)
..+++...++..+. .....+++++||++|.|+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 55666666655443 23457899999999999976
No 81
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.83 E-value=1.9e-20 Score=168.26 Aligned_cols=103 Identities=37% Similarity=0.545 Sum_probs=98.8
Q ss_pred eeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 005478 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 663 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~ 663 (694)
.++.|+|+++||+++.||.+|+++.+|+|+.+++|+|.+|.+.+|.++++..+++|++|++|+.+.|+|.|.+|+|+|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~ 81 (104)
T cd03705 2 VAESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETF 81 (104)
T ss_pred cccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEc
Confidence 36789999999998899999999999999999999999999999999998877889999999999999999999999999
Q ss_pred cccCCcceEEEEeCCcEEEEEEE
Q 005478 664 SNCRALGRAFLRSSGRTIAVGIV 686 (694)
Q Consensus 664 ~~~~~lgrfiLr~~g~Tvg~G~V 686 (694)
.+++.+|||+||++|+|||+|+|
T Consensus 82 ~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 82 SEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred ccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999986
No 82
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.4e-20 Score=208.86 Aligned_cols=240 Identities=26% Similarity=0.363 Sum_probs=171.6
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
....+.+.++|+||+|.|||-|+..|.+.. ..+.-..|||..++..+|.
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tN-------------------------------VqegeaggitqqIgAt~fp 518 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTN-------------------------------VQEGEAGGITQQIGATYFP 518 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccc-------------------------------cccccccceeeeccccccc
Confidence 345678889999999999999999997431 1122236788888777775
Q ss_pred cC------------------CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 005478 341 SK------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (694)
Q Consensus 341 ~~------------------~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~ 402 (694)
.. --.+.+||||||+.|.....+|...||++|||||..+|. .+||.|.+.+|+.
T Consensus 519 ~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl--------epqtiESi~lLR~ 590 (1064)
T KOG1144|consen 519 AENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL--------EPQTIESINLLRM 590 (1064)
T ss_pred hHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC--------CcchhHHHHHHHh
Confidence 32 134889999999999999999999999999999999984 6899999999999
Q ss_pred cCCCcEEEEEeccccc-ccc----------------------hhhHhHHHHhhccchhccccc----------CCCceEE
Q 005478 403 FGVDQLIVAVNKMDAV-QYS----------------------KDRFDSIKVQLGTFLRSCGFK----------DASLTWI 449 (694)
Q Consensus 403 lgip~iIVVVNK~Dlv-~~~----------------------~e~~~~i~~~l~~~l~~~g~~----------~~~v~~I 449 (694)
.+.| +||++||+|++ +|- ..|+..|..++ ...|++ ...+.++
T Consensus 591 rktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~ef----aEQgLN~~LyykNk~~~~~vsiV 665 (1064)
T KOG1144|consen 591 RKTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEF----AEQGLNAELYYKNKEMGETVSIV 665 (1064)
T ss_pred cCCC-eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHcccchhheeecccccceEEee
Confidence 9999 99999999976 332 12222222222 222222 1356789
Q ss_pred EeecccCCCcccCCCCccccccccCcchhhhhhccC----CCCCCCCCCcccceEeEEecC-CCeEeeEEEEeeeeecCC
Q 005478 450 PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR----PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSG 524 (694)
Q Consensus 450 pvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~----~~~~~~~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~G 524 (694)
|+||.+|+||-. ||-.|.++. ...-.....+...|.+|-.+. .|+. +-..+..|.|+.|
T Consensus 666 PTSA~sGeGipd---------------Ll~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtT-IDViLvNG~L~eG 729 (1064)
T KOG1144|consen 666 PTSAISGEGIPD---------------LLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTT-IDVILVNGELHEG 729 (1064)
T ss_pred ecccccCCCcHH---------------HHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCce-EEEEEEcceeccC
Confidence 999999999954 444442221 111123445666777887777 8988 8899999999999
Q ss_pred CEEEEecCCe----------------eeEEEeeeecccc-------------cceeccCCceeEE
Q 005478 525 LKVLVLPSGE----------------VGTVHSIERDSQS-------------CSVARAGDNIAVS 560 (694)
Q Consensus 525 d~v~i~P~~~----------------~~~VksI~~~~~~-------------v~~A~aGd~V~l~ 560 (694)
|.|++...+- ..+|++-+.|+.. ++.|.||-++-|.
T Consensus 730 D~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 730 DQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred CEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 9999875432 3577776666543 4455666655443
No 83
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=7.7e-20 Score=175.38 Aligned_cols=143 Identities=24% Similarity=0.297 Sum_probs=101.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.||+|||||+|+|++....+. + -+|+|++.....+...+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~-----------------n--------------~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG-----------------N--------------WPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE-----------------E--------------STTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec-----------------C--------------CCCCCeeeeeEEEEecCceE
Confidence 5799999999999999999997653332 1 18999999999999999999
Q ss_pred EEEeCCCccchH----HH--HHhh--cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 347 VVLDSPGHKDFV----PN--MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 347 ~liDtPGh~~f~----~~--~i~~--~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
.|+|+||.-.+. .+ .... ...+|++|+|+||++- ......+..+..+|+| +|+|+||||++
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l----------~r~l~l~~ql~e~g~P-~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL----------ERNLYLTLQLLELGIP-VVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH----------HHHHHHHHHHHHTTSS-EEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH----------HHHHHHHHHHHHcCCC-EEEEEeCHHHH
Confidence 999999943321 11 1222 2569999999999862 3555677778889999 99999999988
Q ss_pred ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... .+..-.+.+.+.+ | +|++|+||++|+|+.+
T Consensus 119 ~~~--g~~id~~~Ls~~L---g-----~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 119 ERK--GIEIDAEKLSERL---G-----VPVIPVSARTGEGIDE 151 (156)
T ss_dssp HHT--TEEE-HHHHHHHH---T-----S-EEEEBTTTTBTHHH
T ss_pred HHc--CCEECHHHHHHHh---C-----CCEEEEEeCCCcCHHH
Confidence 522 1111123333333 3 5889999999999976
No 84
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=2.7e-19 Score=187.34 Aligned_cols=149 Identities=30% Similarity=0.426 Sum_probs=118.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.||+|+||+|+|||||+++|++..+.+...... .+++.... ..+|...+|+++|+|+......+++.+..+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v--------~~~~~~~~-t~~D~~~~e~~rg~si~~~~~~~~~~~~~i 73 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAV--------KARKSRKH-ATSDWMEIEKQRGISVTSSVMQFEYRDCVI 73 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCcee--------cccccCCC-ccCCCcHHHHhCCCCeEEEEEEEeeCCEEE
Confidence 689999999999999999999988887643211 01111111 247888999999999999999999999999
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
+|||||||.+|...+..++..+|++|+|+|+..+. ..++..++.++...++| +|+++||||+...+ +.
T Consensus 74 ~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~--------~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~---~~ 141 (267)
T cd04169 74 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV--------EPQTRKLFEVCRLRGIP-IITFINKLDREGRD---PL 141 (267)
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc--------cHHHHHHHHHHHhcCCC-EEEEEECCccCCCC---HH
Confidence 99999999999999999999999999999998764 45777888888888999 89999999987532 23
Q ss_pred HHHHhhccch
Q 005478 427 SIKVQLGTFL 436 (694)
Q Consensus 427 ~i~~~l~~~l 436 (694)
.+.++++..+
T Consensus 142 ~~~~~l~~~l 151 (267)
T cd04169 142 ELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 85
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=3.7e-19 Score=192.67 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=133.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++|||+|.||+|||||+|+|+++...|... ..|+|++.....|++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECC
Confidence 357999999999999999999999876666543 38999999999999999
Q ss_pred eEEEEEeCCCccc----------h-HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005478 344 YHVVVLDSPGHKD----------F-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (694)
Q Consensus 344 ~~v~liDtPGh~~----------f-~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVV 412 (694)
..+.|+||+|.++ | +..++.++..+|+++||+||.+|. ..|....+.++...|.+ +|||+
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~--------~~qD~~ia~~i~~~g~~-~vIvv 296 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI--------SEQDLRIAGLIEEAGRG-IVIVV 296 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc--------hHHHHHHHHHHHHcCCC-eEEEE
Confidence 9999999999443 3 334567788899999999999985 57999999999999999 89999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||+|+++.+...+++.++++...+..++| .+++++||++|.|+.+
T Consensus 297 NKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~ 341 (444)
T COG1160 297 NKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDK 341 (444)
T ss_pred EccccCCchhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHH
Confidence 99999976567788888999998887777 4789999999999976
No 86
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1e-18 Score=168.51 Aligned_cols=151 Identities=28% Similarity=0.369 Sum_probs=110.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC---Ce
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---NY 344 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~---~~ 344 (694)
.|+|+|++|+|||||+++|+..... ....+++|.+.....+... +.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 50 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-------------------------------AGEAGGITQHIGAFEVPAEVLKIP 50 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc-------------------------------cccCCCeEEeeccEEEecccCCcc
Confidence 5999999999999999999842111 1122466766655555553 78
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.+.||||||+..|...+..++..+|++++|+|++.+. ..++.+.+..+...++| +++|+||+|+.....+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~ 121 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV--------MPQTIEAIKLAKAANVP-FIVALNKIDKPNANPER 121 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEEEceecccccHHH
Confidence 8999999999999888888889999999999998763 35777888888888998 89999999987533333
Q ss_pred HhHHHHhhccch-hcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l-~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+......+.... +.++ ..++++++||++|+|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 122 VKNELSELGLQGEDEWG---GDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred HHHHHHHhhcccccccc---CcCcEEEeecccCCCHHH
Confidence 322222222111 0111 246889999999999976
No 87
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=3.7e-19 Score=183.36 Aligned_cols=181 Identities=23% Similarity=0.289 Sum_probs=127.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
++.--|+|+|.||+|||||+|+|+++...|.++. +.+|......-+..++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k------------------------------~QTTR~~I~GI~t~~~ 53 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRNRIRGIVTTDN 53 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC------------------------------cchhhhheeEEEEcCC
Confidence 4556799999999999999999999988887654 3445555555566678
Q ss_pred eEEEEEeCCCccc--------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 344 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 344 ~~v~liDtPGh~~--------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
.+++|+||||... ..+....++..+|++++|||+.++. .......+..++....| +|+++||+
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~--------~~~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGW--------GPGDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccC--------CccHHHHHHHHhhcCCC-eEEEEEcc
Confidence 9999999999322 3444566778899999999999864 45666777777776678 89999999
Q ss_pred cccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc-cCCCC------
Q 005478 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPP------ 488 (694)
Q Consensus 416 Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~~~~------ 488 (694)
|++.. +..+..+.+.+... +.| ..++|+||++|.|+.. |++.|.. ++..+
T Consensus 125 D~~~~-~~~l~~~~~~~~~~---~~f----~~ivpiSA~~g~n~~~---------------L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 125 DKVKP-KTVLLKLIAFLKKL---LPF----KEIVPISALKGDNVDT---------------LLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred ccCCc-HHHHHHHHHHHHhh---CCc----ceEEEeeccccCCHHH---------------HHHHHHHhCCCCCCcCChh
Confidence 99863 22122333333222 233 3679999999999965 7777743 43221
Q ss_pred CCCCCCcccceEeEEecC
Q 005478 489 REFSKPLLMPICDVLKSQ 506 (694)
Q Consensus 489 ~~~~~pl~~~I~~v~~~~ 506 (694)
.-.+.|.+|.+.++.+-+
T Consensus 182 ~itD~~~rf~~aEiiREk 199 (298)
T COG1159 182 QITDRPERFLAAEIIREK 199 (298)
T ss_pred hccCChHHHHHHHHHHHH
Confidence 123566677666665543
No 88
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.3e-20 Score=193.13 Aligned_cols=272 Identities=25% Similarity=0.351 Sum_probs=188.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+..||+|+.|+++||||...+|++-.|.+... ..-.+|. .++|....||++|||+..+...|+|+++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~---------g~vddgd----tvtdfla~erergitiqsaav~fdwkg~ 102 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSA---------GDVDDGD----TVTDFLAIERERGITIQSAAVNFDWKGH 102 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcc---------cccCCCc----hHHHHHHHHHhcCceeeeeeeecccccc
Confidence 45689999999999999999999987776432 1122232 3678889999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch-h
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK-D 423 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~-e 423 (694)
++++||||||.+|.-...+.++..|+++.|+|++.|+ ++||...++.+..+++| -++.+||||+...+. .
T Consensus 103 rinlidtpghvdf~leverclrvldgavav~dasagv--------e~qtltvwrqadk~~ip-~~~finkmdk~~anfe~ 173 (753)
T KOG0464|consen 103 RINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV--------EAQTLTVWRQADKFKIP-AHCFINKMDKLAANFEN 173 (753)
T ss_pred eEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc--------ccceeeeehhccccCCc-hhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999985 68999999999999999 588999999874321 1
Q ss_pred hHhHHHHhhccc--------------------------------------------------------------------
Q 005478 424 RFDSIKVQLGTF-------------------------------------------------------------------- 435 (694)
Q Consensus 424 ~~~~i~~~l~~~-------------------------------------------------------------------- 435 (694)
..+.+.+.+..-
T Consensus 174 avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qla 253 (753)
T KOG0464|consen 174 AVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLA 253 (753)
T ss_pred HHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHh
Confidence 122222222110
Q ss_pred -----------------------------hhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc-cC
Q 005478 436 -----------------------------LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LR 485 (694)
Q Consensus 436 -----------------------------l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~ 485 (694)
+..+.+.....++..-||.++.||. .||+++.. +|
T Consensus 254 d~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiq---------------plldavtmylp 318 (753)
T KOG0464|consen 254 DLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQ---------------PLLDAVTMYLP 318 (753)
T ss_pred hccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCcc---------------chhhhhhhccC
Confidence 0000111123344445566666653 38888754 44
Q ss_pred CCCCCC-------CCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee----cccccceecc
Q 005478 486 PPPREF-------SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARA 553 (694)
Q Consensus 486 ~~~~~~-------~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~a 553 (694)
.|.... ...+....+.+...+ .|.. ++-|+.+|+|+.+-.|........-.+..+.. .+..++...|
T Consensus 319 speernyeflqwykddlcalafkvlhdkqrg~l-~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsa 397 (753)
T KOG0464|consen 319 SPEERNYEFLQWYKDDLCALAFKVLHDKQRGPL-SFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSA 397 (753)
T ss_pred ChhhcchHHHhhhhhhHHHHhhhhhcccccCce-eEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhccc
Confidence 443221 122333344566666 8998 89999999999998888665544333333322 2457888999
Q ss_pred CCceeEEeccccccccccCceeecC
Q 005478 554 GDNIAVSLQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 554 Gd~V~l~L~gid~~~i~rG~VL~~~ 578 (694)
|.+.-.. |+. ....||+++..
T Consensus 398 gnialt~--glk--~tatgdtivas 418 (753)
T KOG0464|consen 398 GNIALTA--GLK--HTATGDTIVAS 418 (753)
T ss_pred ccEEEEe--cce--eeccCCeEEec
Confidence 9865332 543 24468887754
No 89
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.7e-18 Score=190.41 Aligned_cols=173 Identities=27% Similarity=0.379 Sum_probs=137.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
....||+++.|+|||||||...|+...|.|+++...+ . .++|...+|..||||+..+......++
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagk------------i---rfld~redeq~rgitmkss~is~~~~~ 71 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK------------I---RFLDTREDEQTRGITMKSSAISLLHKD 71 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccc------------e---eeccccchhhhhceeeeccccccccCc
Confidence 3567899999999999999999999999888775322 2 358999999999999998888877789
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc----
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ---- 419 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~---- 419 (694)
+.++|||+|||.||.....++.+.+|.++++||+.+|+ ..||...++.+-.-|.+ .|+|+||||+.-
T Consensus 72 ~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv--------~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el~ 142 (887)
T KOG0467|consen 72 YLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGV--------CSQTYAVLRQAWIEGLK-PILVINKIDRLITELK 142 (887)
T ss_pred eEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecccc--------chhHHHHHHHHHHccCc-eEEEEehhhhHHHHHh
Confidence 99999999999999999999999999999999999996 47999999988888888 799999999431
Q ss_pred -cchhhHhH---HHHhhccchh-------------------cccccCCCceEEEeecccCCCcc
Q 005478 420 -YSKDRFDS---IKVQLGTFLR-------------------SCGFKDASLTWIPLSALENQNLV 460 (694)
Q Consensus 420 -~~~e~~~~---i~~~l~~~l~-------------------~~g~~~~~v~~IpvSA~~G~nI~ 460 (694)
...+.+.. +.+++...+. ..-|.+..-.++..||..|.++.
T Consensus 143 lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 143 LSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFG 206 (887)
T ss_pred cChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccccccc
Confidence 12333332 2333333322 22344455567999999998873
No 90
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.78 E-value=2e-18 Score=153.84 Aligned_cols=99 Identities=48% Similarity=0.772 Sum_probs=89.2
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005478 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 660 (694)
Q Consensus 581 ~~~~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~ 660 (694)
|+..++.|+|++++|+++.||..||++.||+|+.+++|+|.+|.+.+| +|+.. |++|++||.|.|+|++++|+|+
T Consensus 1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi~v 75 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPICV 75 (99)
T ss_dssp SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccceee
Confidence 467889999999999999999999999999999999999999999998 55543 8999999999999999999999
Q ss_pred ecccccCCcceEEEEeCCcEEEEEEEEeec
Q 005478 661 EEFSNCRALGRAFLRSSGRTIAVGIVTRII 690 (694)
Q Consensus 661 e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v~ 690 (694)
++|+ ||+||++|+|+|+|+|++|.
T Consensus 76 e~~~------Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 76 EPFS------RFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp TTTT------EEEEEETTEEEEEEEEEEE-
T ss_pred ecCc------eEEEccCCeEEEEEEEEEeC
Confidence 9987 99999999999999999974
No 91
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.77 E-value=2.4e-18 Score=154.47 Aligned_cols=100 Identities=19% Similarity=0.344 Sum_probs=93.2
Q ss_pred eeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 005478 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 663 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~ 663 (694)
.+..|+|+++||+ +.||.+|+++.+|+|+.+++|+|.+|.+++|.+|++. .+|++|..|+.|.|+|++++|+|+|+|
T Consensus 2 ~~~~f~a~i~~l~-~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d~~ 78 (103)
T cd04095 2 VSDQFAATLVWMD-EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFDPY 78 (103)
T ss_pred ccceeeEEEEEec-CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEecch
Confidence 3578999999999 5699999999999999999999999999999999873 488999999999999999999999999
Q ss_pred cccCCcceEEE--EeCCcEEEEEEE
Q 005478 664 SNCRALGRAFL--RSSGRTIAVGIV 686 (694)
Q Consensus 664 ~~~~~lgrfiL--r~~g~Tvg~G~V 686 (694)
.+++++|||+| |++|.|+|+|+|
T Consensus 79 ~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 79 RENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred hhCCCcceEEEEECCCCcEEEEEeC
Confidence 99999999999 556999999986
No 92
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.76 E-value=4.4e-18 Score=164.27 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=102.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+++|++|+|||||+++|+....... +. .. .....|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~--------------~~-----------~~--~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK--------------GL-----------PP--SKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccccc--------------CC-----------cc--cccCCccccceEEEEECCEEEE
Confidence 589999999999999999985322100 00 00 0122244444445666789999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHH-HH---HcCCCcEEEEEecccccccchh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IR---SFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~l-l~---~lgip~iIVVVNK~Dlv~~~~e 423 (694)
|||||||.+|...+...+..+|++|+|+|+.... .+ ......+.. ++ ..++| +|+|+||+|+.. ..
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~---~~----~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~--~~ 123 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE---RF----EESKSALEKVLRNEALEGVP-LLILANKQDLPD--AL 123 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHH---HH----HHHHHHHHHHHhChhhcCCC-EEEEEEcccccc--CC
Confidence 9999999999988888899999999999997631 01 112222221 11 24677 999999999864 23
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+++.+.+.......+. ..++++++||++|+|+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 124 SVEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVRE 159 (167)
T ss_pred CHHHHHHHhccccccccC--CceEEEEeeCCCCcCHHH
Confidence 334444444444433332 346899999999999976
No 93
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.5e-17 Score=160.01 Aligned_cols=153 Identities=25% Similarity=0.275 Sum_probs=106.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.++|+++|++|+|||||+++|++....+. ...+++|.......+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV------------------------------SDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec------------------------------cCCCCCccCceeeEEEECCee
Confidence 57899999999999999999985422111 112455555555556667788
Q ss_pred EEEEeCCCccch----------H-HHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 346 VVVLDSPGHKDF----------V-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 346 v~liDtPGh~~f----------~-~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
+.+|||||+.+. . ..+...+..+|++|+|+|+..+. ..+....+..+...+.| +++++||
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~nK 122 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI--------TEQDLRIAGLILEEGKA-LVIVVNK 122 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc--------chhHHHHHHHHHhcCCC-EEEEEec
Confidence 999999996443 1 22345667899999999998763 23444555556666777 8999999
Q ss_pred ccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 415 ~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|+.+......+.+.+.+...+...+ ..+++++||++|+|+.+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 123 WDLVEKDSKTMKEFKKEIRRKLPFLD----YAPIVFISALTGQGVDK 165 (174)
T ss_pred cccCCccHHHHHHHHHHHHhhccccc----CCceEEEeccCCCCHHH
Confidence 99986433445555555555543322 35789999999999976
No 94
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=8.9e-18 Score=187.64 Aligned_cols=153 Identities=25% Similarity=0.280 Sum_probs=118.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+++|++....+. ...+|+|.+.....+...+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~~ 220 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV------------------------------SDIAGTTRDSIDIPFERNGK 220 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeec------------------------------CCCCCceECcEeEEEEECCc
Confidence 468999999999999999999995432221 12367888877777777888
Q ss_pred EEEEEeCCCccchH-----------HHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005478 345 HVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 345 ~v~liDtPGh~~f~-----------~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN 413 (694)
.+.||||||+.++. ..++.++..+|++|+|+|+..+. ..++.+.+..+...+.| +|+|+|
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~--------~~~~~~~~~~~~~~~~~-iiiv~N 291 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGI--------TEQDLRIAGLILEAGKA-LVIVVN 291 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999975532 12345778899999999999874 45777777778788888 999999
Q ss_pred cccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 414 K~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+|+++ +.+.++.+.+.+...+...+ .++++++||++|.|+.+
T Consensus 292 K~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 292 KWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDK 334 (429)
T ss_pred CcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHH
Confidence 999983 34556667777766654443 36889999999999976
No 95
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=7.9e-18 Score=182.40 Aligned_cols=151 Identities=27% Similarity=0.329 Sum_probs=120.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
+.|||+|.||+|||||+|||++..-+|.... +|+|.|..+...++.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------PGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------------------------------CCCccCCccceeEEcCceE
Confidence 6799999999999999999998766665443 9999999999999999999
Q ss_pred EEEeCCCccc-----hHHH----HHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005478 347 VVLDSPGHKD-----FVPN----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (694)
Q Consensus 347 ~liDtPGh~~-----f~~~----~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dl 417 (694)
.+|||+|... +... +..++..||++|||||+..|+ .++..+...+++..+.| +|+|+||+|-
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Gi--------t~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGI--------TPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 9999999653 3333 345677899999999999985 57888999999977788 9999999996
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhcc
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l 484 (694)
... + .....+.++|+. ..+|+||..|.|+.+ |++++...
T Consensus 125 ~~~-e--------~~~~efyslG~g----~~~~ISA~Hg~Gi~d---------------Lld~v~~~ 163 (444)
T COG1160 125 LKA-E--------ELAYEFYSLGFG----EPVPISAEHGRGIGD---------------LLDAVLEL 163 (444)
T ss_pred chh-h--------hhHHHHHhcCCC----CceEeehhhccCHHH---------------HHHHHHhh
Confidence 531 1 111223456764 349999999999966 88887443
No 96
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.7e-17 Score=185.68 Aligned_cols=153 Identities=25% Similarity=0.291 Sum_probs=118.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+|+|++|+|||||+++|++....+. ...+|+|.+.....+...+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~~ 221 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIV------------------------------SDIAGTTRDSIDTPFERDGQ 221 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCceEEEEEEEEEECCe
Confidence 468999999999999999999996432221 12378898887777888889
Q ss_pred EEEEEeCCCccch-----------HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005478 345 HVVVLDSPGHKDF-----------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 345 ~v~liDtPGh~~f-----------~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN 413 (694)
.+.||||||+.+. ...++.++..+|++|+|+|+..+. ..|+...+.++...+.| +|||+|
T Consensus 222 ~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~--------~~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 222 KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGI--------TEQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999996431 123456788899999999999874 46777888888888888 899999
Q ss_pred cccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 414 K~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
|+|+.+ .+..+++.+++...+.... .++++++||++|.|+.+.
T Consensus 293 K~Dl~~--~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 293 KWDLVD--EKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDKL 335 (435)
T ss_pred CccCCC--HHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHHH
Confidence 999983 4445666666666554433 368999999999999763
No 97
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.75 E-value=9.9e-18 Score=175.85 Aligned_cols=144 Identities=31% Similarity=0.429 Sum_probs=116.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+++||+|+|||||+++|++..+.+..... .. .+ .+.+|...+++.+++|+......+.++++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~-------v~--~g----~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGS-------VE--DG----TTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCe-------ec--CC----cccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 5899999999999999999987766532210 00 01 24578888999999999998889999999999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~ 427 (694)
|||||||.+|...+..++..+|++|+|+|+..+. ..++..++..+...++| +++++||+|+... .++.
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~--------~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~---~~~~ 135 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGV--------EVGTEKLWEFADEAGIP-RIIFINKMDRERA---DFDK 135 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCccCCC---CHHH
Confidence 9999999999999999999999999999999874 45778888888899999 7889999998753 3444
Q ss_pred HHHhhccch
Q 005478 428 IKVQLGTFL 436 (694)
Q Consensus 428 i~~~l~~~l 436 (694)
..++++..+
T Consensus 136 ~~~~l~~~~ 144 (268)
T cd04170 136 TLAALQEAF 144 (268)
T ss_pred HHHHHHHHh
Confidence 555555544
No 98
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.74 E-value=1.8e-17 Score=148.09 Aligned_cols=101 Identities=36% Similarity=0.526 Sum_probs=94.5
Q ss_pred eeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 005478 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 663 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~~e~~ 663 (694)
.+++|+|++.+|.++.||..|+++.+|+|+.+++|+|..|.+.+|.++ ..++++++|++|+.+.|+|.|.+|+|+++|
T Consensus 2 ~~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 79 (102)
T cd01513 2 AVDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALETF 79 (102)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEEEh
Confidence 357899999999999999999999999999999999999999999874 345678999999999999999999999999
Q ss_pred cccCCcceEEEEeCCcEEEEEEE
Q 005478 664 SNCRALGRAFLRSSGRTIAVGIV 686 (694)
Q Consensus 664 ~~~~~lgrfiLr~~g~Tvg~G~V 686 (694)
.+++.+|||+||+.|+|+|+|+|
T Consensus 80 ~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 80 SENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred hhCCCcccEEEEeCCCEEEEEEC
Confidence 99999999999999999999986
No 99
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.73 E-value=3.3e-17 Score=172.17 Aligned_cols=145 Identities=21% Similarity=0.251 Sum_probs=97.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|++|+|||||+|+|++....+... .+++|.+.........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~------------------------------~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP------------------------------KAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC------------------------------CCCcccCcEEEEEEcCCcEEE
Confidence 58999999999999999999654332211 144455433333344567899
Q ss_pred EEeCCCccch--------HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005478 348 VLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 348 liDtPGh~~f--------~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~ 419 (694)
|+||||+.+. .+.+..++..+|++++|+|++... ......+..+...+.| +|+|+||+|++.
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~---------~~~~~i~~~l~~~~~p-~ilV~NK~Dl~~ 121 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWN---------GDGEFVLTKLQNLKRP-VVLTRNKLDNKF 121 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC---------chHHHHHHHHHhcCCC-EEEEEECeeCCC
Confidence 9999996432 233456678899999999998752 1124455666777888 899999999973
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... ...+..+....++ .+++++||++|.|+.+
T Consensus 122 --~~~~---~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 122 --KDKL---LPLIDKYAILEDF----KDIVPISALTGDNTSF 154 (270)
T ss_pred --HHHH---HHHHHHHHhhcCC----CceEEEecCCCCCHHH
Confidence 2222 2222222222232 2679999999999976
No 100
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=1.6e-17 Score=179.87 Aligned_cols=178 Identities=24% Similarity=0.316 Sum_probs=116.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+.++|+++|++|+|||||+++|++....+.. ...++|.+.....+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs------------------------------~k~~tTr~~~~~~~~~~~~ 100 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT------------------------------PKVQTTRSIITGIITLKDT 100 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeecc------------------------------CCCCCccCcEEEEEEeCCe
Confidence 4578999999999999999999964332211 1244555554455667788
Q ss_pred EEEEEeCCCccc--------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 345 ~v~liDtPGh~~--------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
++.||||||+.+ +.+.....+..+|++|+|||+..+. .......+..++..+.| .|+|+||+|
T Consensus 101 qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~--------~~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 101 QVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSF--------DDITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred EEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCC--------CHHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 999999999743 2222334577899999999987642 23445566677777888 578999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc-cCCC------CC
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP------PR 489 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~-l~~~------~~ 489 (694)
+.+. ...++.+.+. ... ....++|+||++|.|+.+ |++.|.. +++. ..
T Consensus 172 l~~~---~~~~~~~~l~----~~~---~~~~i~~iSAktg~gv~e---------------L~~~L~~~l~~~~~~~~~~~ 226 (339)
T PRK15494 172 IESK---YLNDIKAFLT----ENH---PDSLLFPISALSGKNIDG---------------LLEYITSKAKISPWLYAEDD 226 (339)
T ss_pred Cccc---cHHHHHHHHH----hcC---CCcEEEEEeccCccCHHH---------------HHHHHHHhCCCCCCCCCCCC
Confidence 8642 2233333222 211 124689999999999976 6666643 3221 12
Q ss_pred CCCCCcccceEeEEecC
Q 005478 490 EFSKPLLMPICDVLKSQ 506 (694)
Q Consensus 490 ~~~~pl~~~I~~v~~~~ 506 (694)
..+.|.++.+.++++-+
T Consensus 227 ~td~~~~~~~~eiiRe~ 243 (339)
T PRK15494 227 ITDLPMRFIAAEITREQ 243 (339)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 33567777766665543
No 101
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=2.4e-16 Score=155.12 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=102.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++|+|+|++|+|||||+++|++.... . ......|.|.+...... +
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~--~- 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-A----------------------------RTSKTPGRTQLINFFEV--N- 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCcceEEEEEEe--C-
Confidence 35678999999999999999999853210 0 00112455665543332 2
Q ss_pred eEEEEEeCCCcc----------chHHHH---HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEE
Q 005478 344 YHVVVLDSPGHK----------DFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (694)
Q Consensus 344 ~~v~liDtPGh~----------~f~~~~---i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 410 (694)
..+.||||||+. +|...+ +.....+|++|+|+|++.+. ..+..+++.++...++| +++
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~--------~~~~~~~~~~~~~~~~p-vii 134 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPL--------KELDLEMLEWLRERGIP-VLI 134 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCC--------CHHHHHHHHHHHHcCCC-EEE
Confidence 369999999952 233332 23333578999999998763 34666677788888888 999
Q ss_pred EEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCc
Q 005478 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (694)
Q Consensus 411 VVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI 459 (694)
|+||+|+.. ....+...+++...++..+ ...+++++||++|+|+
T Consensus 135 v~nK~D~~~--~~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 135 VLTKADKLK--KSELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGI 178 (179)
T ss_pred EEECcccCC--HHHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCC
Confidence 999999974 3444555666666665543 2357899999999997
No 102
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.70 E-value=5e-17 Score=142.66 Aligned_cols=88 Identities=32% Similarity=0.538 Sum_probs=84.0
Q ss_pred CCCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccc
Q 005478 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (694)
Q Consensus 492 ~~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (694)
++||||+|+++|+.. .|++ ++|+|++|.|++||+|+++|.+..++|++|++++.++++|.|||+|+|.|++++..+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~v-v~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~ 80 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTV-PVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIK 80 (91)
T ss_pred CCCeEEEEEEEEEeCCceEE-EEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcC
Confidence 579999999999988 8888 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecCCC
Q 005478 571 SGGVLCHPDF 580 (694)
Q Consensus 571 rG~VL~~~~~ 580 (694)
+|+|||+++.
T Consensus 81 ~G~vl~~~~~ 90 (91)
T cd03693 81 RGDVAGDSKN 90 (91)
T ss_pred CcCEEccCCC
Confidence 9999999764
No 103
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=1e-16 Score=152.11 Aligned_cols=140 Identities=26% Similarity=0.280 Sum_probs=100.1
Q ss_pred EEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEEE
Q 005478 270 AIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVL 349 (694)
Q Consensus 270 aivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~li 349 (694)
+++|++|+|||||+++|+...... .+...++|.+.....+...+..+.||
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI------------------------------VEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe------------------------------ecCCCCceeCceeEEEEECCeEEEEE
Confidence 589999999999999998431110 11225667666666677778899999
Q ss_pred eCCCccchHH--------HHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 350 DSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 350 DtPGh~~f~~--------~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
||||+.++.. .....+..+|++++|+|+..+. .....+++.+++..+.| +|+|+||+|+....
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~ 121 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL--------TPADEEIAKYLRKSKKP-VILVVNKVDNIKEE 121 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC--------CccHHHHHHHHHhcCCC-EEEEEECcccCChH
Confidence 9999988543 3455678899999999998753 23445667777778888 99999999997532
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. . ..+..+++ .+++++||++|.|+.+
T Consensus 122 ~~-----~----~~~~~~~~----~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 122 DE-----A----AEFYSLGF----GEPIPISAEHGRGIGD 148 (157)
T ss_pred HH-----H----HHHHhcCC----CCeEEEecccCCCHHH
Confidence 11 1 11222333 2569999999999976
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=1.3e-16 Score=155.61 Aligned_cols=150 Identities=22% Similarity=0.263 Sum_probs=97.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++|+++|++++|||||+++|++.. +. ......|.. ...+...+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~--~~----------------------------~~~~t~g~~----~~~~~~~~ 57 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGED--ID----------------------------TISPTLGFQ----IKTLEYEG 57 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCC--CC----------------------------CcCCccccc----eEEEEECC
Confidence 345789999999999999999998431 00 000112211 22233457
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHH---HHcCCCcEEEEEecccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLI---RSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll---~~lgip~iIVVVNK~Dlv~ 419 (694)
..+.||||||+..|...+...+..+|++|+|+|+.... .+ ......+ .++ ...++| ++||+||+|+.+
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 129 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL---RL----DDCKRELKELLQEERLAGAT-LLILANKQDLPG 129 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH---HH----HHHHHHHHHHHhChhhcCCC-EEEEEECccccc
Confidence 88999999999988877777888999999999998741 11 1111122 222 224556 999999999874
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ...+++ ..+++...+....++++++||++|.|+.+
T Consensus 130 ~--~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 130 A--LSEEEI----REALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred C--CCHHHH----HHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 2 122222 22222222223456899999999999976
No 105
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=2.1e-16 Score=178.60 Aligned_cols=152 Identities=19% Similarity=0.237 Sum_probs=108.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+|+|++|+|||||+++|++....+ ....+|+|.+.....+..++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 35899999999999999999999542211 112367787776667777888
Q ss_pred EEEEEeCCCcc---------chHHHH--HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005478 345 HVVVLDSPGHK---------DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 345 ~v~liDtPGh~---------~f~~~~--i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN 413 (694)
.+.||||||.. ++...+ ...+..+|++|+|+|++.+. ..+....+..+...+.| +|||+|
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~--------s~~~~~~~~~~~~~~~p-iIiV~N 330 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPI--------SEQDQRVLSMVIEAGRA-LVLAFN 330 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 99999999953 232222 33567899999999999874 34555666666677888 999999
Q ss_pred cccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 414 K~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+|+.+ ......+..++...+.... ..+++++||++|.|+.+
T Consensus 331 K~Dl~~--~~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~ 372 (472)
T PRK03003 331 KWDLVD--EDRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDK 372 (472)
T ss_pred CcccCC--hhHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHH
Confidence 999974 2222333344444333322 24789999999999977
No 106
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=4.6e-16 Score=150.25 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=95.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~-- 343 (694)
.++|+++|++|+|||||+++|++.. .. .+..+.++.+.....+..++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT--FS-----------------------------ERQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC--Cc-----------------------------ccCCCccceEEEEEEEEECCEE
Confidence 4789999999999999999998421 10 00011122233333344444
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~ 420 (694)
..+.||||||+.+|...+...+..+|++|+|+|+.... .+ ......+..+.. .++| +|+|+||+|+...
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 123 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS---SF----ESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQ 123 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH---HH----HhHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 57899999999999888888888999999999998742 11 111222222222 3566 8999999998753
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+...+ +...+.+..+ ...++++||++|.|+.+
T Consensus 124 ~~~~~~----~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 124 REVLFE----EACTLAEKNG----MLAVLETSAKESQNVEE 156 (165)
T ss_pred cccCHH----HHHHHHHHcC----CcEEEEEECCCCCCHHH
Confidence 221112 2222332222 24679999999999976
No 107
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.68 E-value=3.3e-16 Score=151.40 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=91.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe-EE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-HV 346 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~-~v 346 (694)
+|+++|++|+|||||+++|++....+. ...+.|++.....+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-------------------------------DYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-------------------------------CCCccccCCcceEEEcCCCCeE
Confidence 599999999999999999985322111 0123344444444455555 89
Q ss_pred EEEeCCCcc-------chHHHHHhhcccCCEEEEEEecCCC-ccccccccchhHHHHHHHHHHHc-----CCCcEEEEEe
Q 005478 347 VVLDSPGHK-------DFVPNMISGATQSDAAILVIDASVG-SFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVN 413 (694)
Q Consensus 347 ~liDtPGh~-------~f~~~~i~~~~~aD~aILVVDa~~g-~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVVVN 413 (694)
.||||||+. .+...+++.+..+|++|+|+|++.. .. ..+....+..+... +.| +|+|+|
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~p-~ivv~N 122 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDP-------VEDYKTIRNELELYNPELLEKP-RIVVLN 122 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCH-------HHHHHHHHHHHHHhCccccccc-cEEEEE
Confidence 999999964 2344555666779999999999875 10 01222222333322 455 899999
Q ss_pred cccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 414 K~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+|+.+. ...... +..++... ...+++++||++|.|+.+
T Consensus 123 K~Dl~~~--~~~~~~---~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 123 KIDLLDE--EELFEL---LKELLKEL----WGKPVFPISALTGEGLDE 161 (170)
T ss_pred chhcCCc--hhhHHH---HHHHHhhC----CCCCEEEEecCCCCCHHH
Confidence 9998752 222211 22222221 134689999999999976
No 108
>PRK00089 era GTPase Era; Reviewed
Probab=99.68 E-value=4.9e-16 Score=164.95 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=100.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+...|+++|++|+|||||+|+|++....+... .+++|.+.....+...+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~------------------------------~~~tt~~~i~~i~~~~~~ 53 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRHRIRGIVTEDDA 53 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC------------------------------CCCcccccEEEEEEcCCc
Confidence 45679999999999999999999654332211 122333332233334567
Q ss_pred EEEEEeCCCccch--------HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 345 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 345 ~v~liDtPGh~~f--------~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
.++|+||||+.+. .......+..+|++++|+|+..+. .....+.+..+...+.| +++|+||+|
T Consensus 54 qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~--------~~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 54 QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI--------GPGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------ChhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 8999999996442 334455678899999999998742 23455666666666777 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+.. +........+.+... .+ ..+++++||++|.|+.+
T Consensus 125 l~~-~~~~l~~~~~~l~~~---~~----~~~i~~iSA~~~~gv~~ 161 (292)
T PRK00089 125 LVK-DKEELLPLLEELSEL---MD----FAEIVPISALKGDNVDE 161 (292)
T ss_pred CCC-CHHHHHHHHHHHHhh---CC----CCeEEEecCCCCCCHHH
Confidence 973 123333333333322 22 24679999999999976
No 109
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.9e-15 Score=166.93 Aligned_cols=132 Identities=25% Similarity=0.334 Sum_probs=105.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE----
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---- 339 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~---- 339 (694)
...++|+++||-.||||+|+..|..+..-- +.+ .-+. -...+|.+..|++||.+|...-..+
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~----~~~-------~~e~---~lrytD~l~~E~eRg~sIK~~p~Tl~l~D 191 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPD----FSK-------NTEA---DLRYTDTLFYEQERGCSIKSTPVTLVLSD 191 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceecccc----ccc-------cccc---cccccccchhhHhcCceEeecceEEEEec
Confidence 357899999999999999999998654311 100 0001 1245788999999999987554332
Q ss_pred -ecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 340 -DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 340 -~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
..+.+.++|+|||||.+|..++...++.+|+++||||+.+|+ +-++...+..+-+-..+ ++||+||+|++
T Consensus 192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGV--------mlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGV--------MLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCc--------eeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 235678999999999999999999999999999999999985 56888888888888888 99999999975
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.67 E-value=5.7e-16 Score=148.37 Aligned_cols=148 Identities=22% Similarity=0.229 Sum_probs=94.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|.+++|||||+++|+....... ......|.++ ..+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~----------------------------~~~~t~g~~~----~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ----------------------------IIVPTVGFNV----ESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc----------------------------eecCccccce----EEEEECCEEEE
Confidence 489999999999999999984211000 0001122222 22445678899
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-H-----HcCCCcEEEEEecccccccc
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-R-----SFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~-----~lgip~iIVVVNK~Dlv~~~ 421 (694)
||||||+.+|...+...+..+|++|+|+|++... .+ ......+..+ . ..++| +++|+||+|+.+.
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~- 119 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL---RL----VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDA- 119 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHH---HH----HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCC-
Confidence 9999999999888888889999999999998642 01 1112222222 2 13567 9999999998742
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....++...+.. .. +....++++++||++|.|+.+
T Consensus 120 -~~~~~~~~~l~~--~~--~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 120 -LTAVKITQLLGL--EN--IKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred -CCHHHHHHHhCC--cc--ccCceEEEEEeeCCCCCchHH
Confidence 122222222211 11 111235689999999999977
No 111
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=2.4e-16 Score=150.19 Aligned_cols=139 Identities=20% Similarity=0.260 Sum_probs=94.7
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEEEe
Q 005478 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (694)
Q Consensus 271 ivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~liD 350 (694)
++|++|+|||||+++|++.... ....+|+|++.....+.+.+..+.|||
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-------------------------------VGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-------------------------------ccCCCCcccccceEEEeeCCeEEEEEE
Confidence 5899999999999999843110 011257777776666777788999999
Q ss_pred CCCccchHHH------HHhhc--ccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 351 SPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 351 tPGh~~f~~~------~i~~~--~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
|||+.+|... +...+ ..+|++|+|+|+.... +....+..+...++| +|+|+||+|+.+..
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~- 117 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE----------RNLYLTLQLLELGLP-VVVALNMIDEAEKR- 117 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch----------hHHHHHHHHHHcCCC-EEEEEehhhhcccc-
Confidence 9999876532 22333 4899999999998631 223334455667888 89999999997532
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... .....+.+.++ .+++++||.+|.|+.+
T Consensus 118 -~~~---~~~~~~~~~~~-----~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 118 -GIK---IDLDKLSELLG-----VPVVPTSARKGEGIDE 147 (158)
T ss_pred -cch---hhHHHHHHhhC-----CCeEEEEccCCCCHHH
Confidence 111 11112222223 4689999999999976
No 112
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=4.4e-16 Score=173.99 Aligned_cols=142 Identities=25% Similarity=0.292 Sum_probs=108.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+|+|++|+|||||+++|++....+. ...+|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v------------------------------~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------SDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee------------------------------cCCCCcccCceEEEEEECCeEEE
Confidence 489999999999999999995432221 12368888887788888899999
Q ss_pred EEeCCCc--------cchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005478 348 VLDSPGH--------KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 348 liDtPGh--------~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~ 419 (694)
||||||+ ..+...+..++..+|++|+|+|+..+. .....+.+.+++..+.| +|+|+||+|+..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~--------~~~d~~i~~~l~~~~~p-iilVvNK~D~~~ 121 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGL--------TPEDEEIAKWLRKSGKP-VILVANKIDGKK 121 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHhCCC-EEEEEECccCCc
Confidence 9999997 345556677788999999999999864 45667788888888988 999999999874
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... ..+ +..+++ .+++++||.+|.|+.+
T Consensus 122 ~~~~-----~~~----~~~lg~----~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 122 EDAV-----AAE----FYSLGF----GEPIPISAEHGRGIGD 150 (429)
T ss_pred cccc-----HHH----HHhcCC----CCeEEEeCCcCCChHH
Confidence 2211 111 223444 2569999999999976
No 113
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.67 E-value=6.5e-16 Score=150.63 Aligned_cols=150 Identities=20% Similarity=0.211 Sum_probs=95.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+.++|+++|++++|||||+++|.... ... .....|.++ ..+.....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~--~~~----------------------------~~~t~g~~~----~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQ--SVT----------------------------TIPTVGFNV----ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCC--Ccc----------------------------ccCCcccce----EEEEECCE
Confidence 45899999999999999999997321 000 001122222 12334678
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+.+|...+...+..+|++|+|+|++... .+ .....+...++.. -++| +++|.||+|+.+.
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RI---DEARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---hH---HHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 8999999999999888778889999999999998631 11 1111222223321 2456 9999999998641
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+++...+. ...+....+.++++||++|.|+.+
T Consensus 126 -~~~~~i~~~~~----~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 126 -MKPHEIQEKLG----LTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred -CCHHHHHHHcC----CCccCCCcEEEEEeeCCCCCChHH
Confidence 12223333221 111112235689999999999976
No 114
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.66 E-value=9.1e-16 Score=147.28 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=93.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEE--EEEEEEecCC
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT--VAVAYFDSKN 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~--~~~~~~~~~~ 343 (694)
.++|+++|.+|+|||||++++++... .... ...+.+ .....+....
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~------------------------------~~t~~~~~~~~~~~~~~~ 49 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDY------------------------------DPTIEDSYTKQCEIDGQW 49 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--Cccc------------------------------CCCccceEEEEEEECCEE
Confidence 47899999999999999999985321 0000 001111 1111222333
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~ 420 (694)
..+.||||||+.+|...+...+..+|++|+|+|++... .+. ....+...+.+. .++| +|+|+||+|+...
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~ 122 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG---SFE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCCC-EEEEeeCcccccc
Confidence 57889999999999888888889999999999998642 111 111111122222 3566 8999999998642
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..... ++...+++..+ ++++++||++|.|+.+
T Consensus 123 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 123 RKVSR----EEGQELARKLK-----IPYIETSAKDRLNVDK 154 (164)
T ss_pred ceecH----HHHHHHHHHcC-----CcEEEeeCCCCCCHHH
Confidence 11111 12223333333 4689999999999976
No 115
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=1.2e-15 Score=147.20 Aligned_cols=146 Identities=23% Similarity=0.224 Sum_probs=94.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++++|||||+++|+...... ......+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-----------------------------QQLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CcCCceeeEEEEEEEEECCEEEEE
Confidence 579999999999999999998421100 000111222222222334445678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccchhh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~e~ 424 (694)
.||||||++.|...+..++..+|++|+|+|++.+.. + ....+.+..++.. ++| +|+|+||+|+... .
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~---~ 120 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---Y----KNLSKWYEELREYRPEIP-CIVVANKIDLDPS---V 120 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhCCCCc-EEEEEECccCchh---H
Confidence 899999999999888888999999999999986421 1 1223334444433 566 8999999998531 1
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. .+...+.+.. .++++++||++|.|+.+
T Consensus 121 ~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 121 T----QKKFNFAEKH-----NLPLYYVSAADGTNVVK 148 (161)
T ss_pred H----HHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Confidence 1 1111222222 24789999999999977
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.66 E-value=6e-16 Score=148.51 Aligned_cols=147 Identities=24% Similarity=0.234 Sum_probs=93.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|++++|||||+++|...... . .....|.+ ...++..+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~---------------------------~---~~~t~~~~----~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV---------------------------T---TIPTIGFN----VETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc---------------------------C---cCCccCcC----eEEEEECCEEEE
Confidence 5899999999999999999732100 0 00011111 123445678899
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccchhh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
||||||+.+|...+...+..+|++|+|+|++... . +.....+...++.. .+.| +++|+||+|+.+.. .
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~--~ 117 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD---R---LGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL--S 117 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH---H---HHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC--C
Confidence 9999999999888888899999999999998631 0 01111222222222 2556 99999999987421 1
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..++...+.. ..+.....+++++||++|.|+.+
T Consensus 118 ~~~i~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 118 EAEISEKLGL----SELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred HHHHHHHhCc----cccCCCcEEEEEeeccCCCCHHH
Confidence 2223332211 11112235789999999999976
No 117
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=9.3e-16 Score=145.39 Aligned_cols=137 Identities=26% Similarity=0.281 Sum_probs=95.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++|+|||||+++|++...... ...+++|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV------------------------------SDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec------------------------------cCCCCCccceEEEEEEeCCEEE
Confidence 4799999999999999999985321110 1125667666666677778899
Q ss_pred EEEeCCCccchHH--------HHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH-HcCCCcEEEEEecccc
Q 005478 347 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDA 417 (694)
Q Consensus 347 ~liDtPGh~~f~~--------~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lgip~iIVVVNK~Dl 417 (694)
++|||||+.++.. .+...+..+|++++|+|+.... +......+. ..+.| +|+|+||+|+
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~-----------~~~~~~~~~~~~~~~-vi~v~nK~D~ 119 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL-----------DEEDLEILELPADKP-IIVVLNKSDL 119 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC-----------CHHHHHHHHhhcCCC-EEEEEEchhc
Confidence 9999999876532 2445677899999999999642 122222233 34556 9999999998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..... . .. .....+++++||+++.|+.+
T Consensus 120 ~~~~~--~---------~~-----~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 120 LPDSE--L---------LS-----LLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CCccc--c---------cc-----ccCCCceEEEECCCCCCHHH
Confidence 75211 1 11 11235789999999999976
No 118
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=9.2e-16 Score=173.44 Aligned_cols=144 Identities=27% Similarity=0.326 Sum_probs=104.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.++|+|+|++|+|||||+++|++....+ ....+|+|.+.....+.+.+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~~ 87 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGRR 87 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCcE
Confidence 4789999999999999999999532211 1224788888877778888899
Q ss_pred EEEEeCCCccc--------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005478 346 VVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (694)
Q Consensus 346 v~liDtPGh~~--------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dl 417 (694)
+.||||||+.. +...+..++..||++|+|+|++.+. .....+.+.+++..+.| +|+|+||+|+
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~--------s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA--------TATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 99999999763 3344555778899999999999864 22345566777777888 9999999998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.....+ . .. +..+++. ..+++||++|.|+.+
T Consensus 159 ~~~~~~----~----~~-~~~~g~~----~~~~iSA~~g~gi~e 189 (472)
T PRK03003 159 ERGEAD----A----AA-LWSLGLG----EPHPVSALHGRGVGD 189 (472)
T ss_pred Cccchh----h----HH-HHhcCCC----CeEEEEcCCCCCcHH
Confidence 642111 1 11 1123442 237999999999976
No 119
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.66 E-value=2e-15 Score=144.62 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=97.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--eE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--YH 345 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~--~~ 345 (694)
+|+++|++++|||||+++|++..... +..++++.+.....+...+ ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-------------------------------QYQATIGIDFLSKTMYLEDKTVR 50 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-------------------------------cCCCceeeeEEEEEEEECCEEEE
Confidence 79999999999999999998532111 1224455555555454444 56
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHH-HHHHcC--CCcEEEEEecccccccch
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFG--VDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~lg--ip~iIVVVNK~Dlv~~~~ 422 (694)
+.||||||+..|...+...+..+|++|+|+|++... .+ .+....+. +....+ +| +|+|+||+|+.....
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~ 122 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ---SF----DNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQ 122 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCc
Confidence 899999999999888888899999999999998642 11 12222222 233333 66 999999999853222
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+ +...+.+.. .++++++||++|.|+.+
T Consensus 123 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 123 VSTE----EGEKKAKEL-----NAMFIETSAKAGHNVKE 152 (161)
T ss_pred cCHH----HHHHHHHHh-----CCEEEEEeCCCCCCHHH
Confidence 1211 122222222 25789999999999976
No 120
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.66 E-value=7.3e-16 Score=144.69 Aligned_cols=150 Identities=24% Similarity=0.289 Sum_probs=94.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--e
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~--~ 344 (694)
+||+++|++|+|||||+++|+... . ..+..+++|.+.....+..++ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F------------------------------ITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C------------------------------cCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999998532 1 112235666666665555666 7
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccc-hhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTA-KGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~-~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
.+.+||+||+.+|..........++.++.++|....+. ++... ..+.......+.. ++| ++||+||+|+....
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~--~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL--DVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh--hhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch--
Confidence 89999999999986555444455555555555443210 01101 1223333333322 667 89999999997532
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+...+...+...+. .+++++||.+|.|+.+
T Consensus 125 ----~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG----EPIIPLSAETGKNIDS 154 (161)
T ss_pred ----hhHHHHHHHhhccC----CceEEeecCCCCCHHH
Confidence 22333333433332 4589999999999976
No 121
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.66 E-value=1.6e-15 Score=146.57 Aligned_cols=147 Identities=21% Similarity=0.237 Sum_probs=91.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++|+|||||+++|++....+ ....+.|.+.....+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-------------------------------APYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-------------------------------CCCCCcccceeEEEEccCceEE
Confidence 479999999999999999998532110 1113455555555566677899
Q ss_pred EEEeCCCccch-------H-HHHHhh-cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecc
Q 005478 347 VVLDSPGHKDF-------V-PNMISG-ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKM 415 (694)
Q Consensus 347 ~liDtPGh~~f-------~-~~~i~~-~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~ 415 (694)
+||||||+.+. . ...+.. ...+|++|+|+|++.... + .. ....+.+..++.. ++| +|+|+||+
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~-~~-~~~~~~~~~l~~~~~~~p-vilv~NK~ 123 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---Y-SL-EEQLSLFEEIKPLFKNKP-VIVVLNKI 123 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---c-ch-HHHHHHHHHHHhhcCcCC-eEEEEEcc
Confidence 99999998421 1 111212 234689999999986421 1 01 1222334444443 566 99999999
Q ss_pred cccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 416 Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+... ..... ...+.+. ...+++++||++|.|+.+
T Consensus 124 Dl~~~--~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 124 DLLTF--EDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCch--hhHHH----HHHhhhh-----ccCceEEEEecccCCHHH
Confidence 99742 22222 1122211 235789999999999977
No 122
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.65 E-value=4.6e-16 Score=134.17 Aligned_cols=83 Identities=41% Similarity=0.682 Sum_probs=79.2
Q ss_pred CcccceEeEEecCCCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCc
Q 005478 494 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (694)
Q Consensus 494 pl~~~I~~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~ 573 (694)
||+|+|+++|+.+.|++ ++|+|++|+|++||+|.++|++..++|++|++++.++++|.|||+|+|.|++++..++++|+
T Consensus 1 p~r~~V~~v~~~~~g~v-v~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~ 79 (83)
T cd03698 1 PFRLPISDKYKDQGGTV-VSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGD 79 (83)
T ss_pred CeEEEEEeEEEcCCCcE-EEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCC
Confidence 79999999998777887 89999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeec
Q 005478 574 VLCH 577 (694)
Q Consensus 574 VL~~ 577 (694)
+|++
T Consensus 80 vl~~ 83 (83)
T cd03698 80 VLCS 83 (83)
T ss_pred EEeC
Confidence 9984
No 123
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=2.4e-15 Score=144.33 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=97.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++++|||||+++|++..-.. ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999999532110 011123333333333444455678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~~e 423 (694)
.|||+||+++|.......+..+|++|+|+|++... .+ .+....+..+... ++| +||++||+|+......
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~ 124 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE---SF----EKAKSWVKELQRNASPNII-IALVGNKADLESKRQV 124 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC
Confidence 99999999998887777888999999999998642 01 2233333444443 345 8999999998742111
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ ++..+....+ ++++++||++|.|+.+
T Consensus 125 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 125 STE----EAQEYADENG-----LLFFETSAKTGENVNE 153 (163)
T ss_pred CHH----HHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111 2222333333 4689999999999976
No 124
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.65 E-value=3.4e-15 Score=143.20 Aligned_cols=147 Identities=13% Similarity=0.202 Sum_probs=94.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE--e--cC
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--D--SK 342 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~--~--~~ 342 (694)
++|+++|.+++|||||+++|++.... .+..+.+..+.....+ . ..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-------------------------------KDYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCcEEEEEEEEEEEEcCCCC
Confidence 47999999999999999999842110 0001222223222222 2 23
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH--HcCCCcEEEEEeccccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVVVNK~Dlv~~ 420 (694)
...+.||||||+++|...+...++.+|++++|+|+.... .+. .....+..+. ..++| +|+|+||+|+...
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~----~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 121 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE---SFE----AIESWKEKVEAECGDIP-MVLVQTKIDLLDQ 121 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCC-EEEEEEChhcccc
Confidence 567999999999999888888899999999999998642 111 1111121122 13667 8999999998742
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..... ++...+.+.++ ++++++||++|.|+.+
T Consensus 122 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 122 AVITN----EEAEALAKRLQ-----LPLFRTSVKDDFNVTE 153 (162)
T ss_pred cCCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 22111 12223333333 4689999999999976
No 125
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.65 E-value=3.8e-15 Score=142.79 Aligned_cols=147 Identities=19% Similarity=0.204 Sum_probs=94.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--e
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~--~ 344 (694)
++|+++|++|+|||||+++|++.... ....+.++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-------------------------------EQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 47999999999999999999843210 01112233333333344444 5
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.|||+||+..|.......+..+|++|+|+|+.+... + ......+..+.. -++| +++|+||+|+....
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~----~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~ 121 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---F----ENLKNWLKELREYADPNVV-IMLVGNKSDLEDQR 121 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhCCCCCe-EEEEEEchhccccc
Confidence 78899999999999888888899999999999986420 1 011112222222 2466 99999999987421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+...+.+ ..+.+..+ ++++++||.+|.|+.+
T Consensus 122 ~~~~~~~----~~~~~~~~-----~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 122 QVSREEA----EAFAEEHG-----LPFFETSAKTNTNVEE 152 (164)
T ss_pred CCCHHHH----HHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 1111212 22233333 4689999999999976
No 126
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.65 E-value=1.7e-15 Score=146.19 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|..++|||||+++|... .... .....|..+ ..+......+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~--~~~~----------------------------~~pt~g~~~----~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG--EIVT----------------------------TIPTIGFNV----ETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCcc----------------------------cCCCCCcce----EEEEECCEEE
Confidence 47999999999999999999631 1100 000112221 2234467889
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHHH---cCCCcEEEEEecccccccch
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS---FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~---lgip~iIVVVNK~Dlv~~~~ 422 (694)
.||||||+.+|...+...+..+|++|+|+|++... .+ .+..+.+ .++.. ...| +++|+||+|+.+...
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~----~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RI----GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH----HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC
Confidence 99999999999888888899999999999998631 11 1222222 22221 1345 999999999864211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+++...+. ...+....+.++++||++|+|+.+
T Consensus 119 --~~~i~~~~~----~~~~~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 119 --AAEVTDKLG----LHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred --HHHHHHHhC----ccccCCCCEEEEEeeCCCCCCHHH
Confidence 122222221 111122345678999999999976
No 127
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.64 E-value=3.2e-15 Score=141.21 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=97.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++++|||||+++|++...... ..+..+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-----------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-----------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 4799999999999999999985322111 01112233333223333345788
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~~e 423 (694)
.|||+||+..|.......+..+|++|+|+|+.... .+ ......+..+... +.| ++|++||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~----~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~ 123 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE---SF----ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQV 123 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccc
Confidence 99999999999988888899999999999998632 11 1222333334333 356 9999999999621122
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. +++..+.... .++++.+||++|.|+.+
T Consensus 124 ~~----~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 124 ST----EEAQQFAKEN-----GLLFFETSAKTGENVEE 152 (159)
T ss_pred cH----HHHHHHHHHc-----CCeEEEEecCCCCCHHH
Confidence 22 2233333322 35789999999999976
No 128
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.64 E-value=1.8e-15 Score=145.18 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=95.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE--EEecCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFDSKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~--~~~~~~~ 344 (694)
+||+++|++++|||||+++|++..... +..+.++.+.... .+.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-------------------------------DSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-------------------------------CCCCceeeeEEEEEEEECCEEE
Confidence 479999999999999999998532111 0011222222222 2333346
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+.+|.......+..+|++|+|+|++.... + .+....+..+.. .++| +++|+||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~ 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---F----EALPTWLSDARALASPNIV-VILVGNKSDLADQR 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc
Confidence 78999999999998888888899999999999987531 1 112222222222 3566 89999999987421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 122 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 122 EVTF----LEASRFAQENG-----LLFLETSALTGENVEE 152 (161)
T ss_pred cCCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 1111 22223333333 4789999999999976
No 129
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.3e-15 Score=147.93 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=102.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.+-||++|+.|+|||||||+|+++.... .....+|.|..+.+..+...
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------------rtSktPGrTq~iNff~~~~~--- 71 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------------RTSKTPGRTQLINFFEVDDE--- 71 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCccee-----------------------------ecCCCCCccceeEEEEecCc---
Confidence 3459999999999999999999754321 11234888887765544332
Q ss_pred EEEEeCCC----------ccchHHHHHhhc---ccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005478 346 VVVLDSPG----------HKDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (694)
Q Consensus 346 v~liDtPG----------h~~f~~~~i~~~---~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVV 412 (694)
+.|+|.|| .+.+...+..++ .+..+++++||++++. ....++++.++...++| ++||+
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~--------~~~D~em~~~l~~~~i~-~~vv~ 142 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP--------KDLDREMIEFLLELGIP-VIVVL 142 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC--------cHHHHHHHHHHHHcCCC-eEEEE
Confidence 88999999 222333333333 3467899999999984 45788999999999999 89999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCC-CceEEEeecccCCCccc
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVT 461 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~-~v~~IpvSA~~G~nI~e 461 (694)
||+|++.. .........+...+ .+... ...++.+|+.++.|+++
T Consensus 143 tK~DKi~~--~~~~k~l~~v~~~l---~~~~~~~~~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 143 TKADKLKK--SERNKQLNKVAEEL---KKPPPDDQWVVLFSSLKKKGIDE 187 (200)
T ss_pred EccccCCh--hHHHHHHHHHHHHh---cCCCCccceEEEEecccccCHHH
Confidence 99999963 22222222333222 22111 11278899999999876
No 130
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=1.6e-15 Score=179.32 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=108.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+++|++....+. ....|+|.+.....+...+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV------------------------------NDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc------------------------------CCCCCCCcCcceeEEEECCC
Confidence 347999999999999999999996432211 11367777776666777888
Q ss_pred EEEEEeCCCcc---------chHHH--HHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005478 345 HVVVLDSPGHK---------DFVPN--MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 345 ~v~liDtPGh~---------~f~~~--~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN 413 (694)
.+.||||||+. +|... ...++..+|++|+|+|++.+. ..+....+..+...+.| +|||+|
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~--------s~~~~~i~~~~~~~~~p-iIiV~N 569 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPI--------SEQDLKVMSMAVDAGRA-LVLVFN 569 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 99999999964 23322 234567899999999999874 34666666667777888 999999
Q ss_pred cccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 414 K~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+|+.+ .+..+.+...+...+.... ..+++++||++|.|+.+
T Consensus 570 K~DL~~--~~~~~~~~~~~~~~l~~~~----~~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 570 KWDLMD--EFRRQRLERLWKTEFDRVT----WARRVNLSAKTGWHTNR 611 (712)
T ss_pred chhcCC--hhHHHHHHHHHHHhccCCC----CCCEEEEECCCCCCHHH
Confidence 999974 2223334444443332222 24679999999999976
No 131
>PRK04213 GTP-binding protein; Provisional
Probab=99.64 E-value=3.1e-15 Score=149.53 Aligned_cols=157 Identities=24% Similarity=0.293 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+++|++... .....+|+|...... ...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~~--~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-------------------------------RVGKRPGVTRKPNHY--DWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCceeeCceEE--eec--
Confidence 457899999999999999999984311 111235677654433 232
Q ss_pred EEEEEeCCCc-----------cchHHHHHh----hcccCCEEEEEEecCCCcc-ccccc--cchhHHHHHHHHHHHcCCC
Q 005478 345 HVVVLDSPGH-----------KDFVPNMIS----GATQSDAAILVIDASVGSF-EVGMN--TAKGLTREHAQLIRSFGVD 406 (694)
Q Consensus 345 ~v~liDtPGh-----------~~f~~~~i~----~~~~aD~aILVVDa~~g~~-e~~~~--~~~~qt~e~l~ll~~lgip 406 (694)
.++||||||+ +.|...+.. ++..+|++++|+|+..... ...+. ....++.+++..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 5899999994 334333222 4456789999999864210 00000 0123456667777778888
Q ss_pred cEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 407 ~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|+|+||+|+.+...+..+++.+.+... ..+.....+++++||++| |+.+
T Consensus 133 -~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~SA~~g-gi~~ 182 (201)
T PRK04213 133 -PIVAVNKMDKIKNRDEVLDEIAERLGLY---PPWRQWQDIIAPISAKKG-GIEE 182 (201)
T ss_pred -eEEEEECccccCcHHHHHHHHHHHhcCC---ccccccCCcEEEEecccC-CHHH
Confidence 8999999998753222223333222210 011111236799999999 9976
No 132
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.64 E-value=1.9e-15 Score=147.96 Aligned_cols=149 Identities=23% Similarity=0.204 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
..+|+++|++++|||||+++|+..... . ...|+......+...+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~---------------------------~-------~~~t~~~~~~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV---------------------------H-------TSPTIGSNVEEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC---------------------------C-------cCCccccceEEEEECCeE
Confidence 478999999999999999999842110 0 001222222344556789
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~ 422 (694)
+.||||||+..|...+...+..+|++|+|+|++... .+ .....+...++.. .++| ++|++||+|+.+.
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~---~~---~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~-- 131 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE---RL---PLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA-- 131 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC--
Confidence 999999999999888888889999999999998642 01 1111222233322 2456 9999999998642
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+++.+.+.. .......++++++||++|+|+.+
T Consensus 132 ~~~~~i~~~l~~----~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 132 MTPAEISESLGL----TSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred CCHHHHHHHhCc----ccccCCceEEEecccCCCCCHHH
Confidence 122233333321 01112245789999999999977
No 133
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.64 E-value=4.3e-15 Score=144.26 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=96.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.++|+++|++|+|||||+++|+....... .....|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceeEEEEEEEECCEEEE
Confidence 47899999999999999999984321110 0011233333333333334467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~ 422 (694)
+.||||||+++|.......+..+|++|+|+|++... .+ .....++..++. -++| +|||.||+|+.....
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~ 126 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF----NHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRRE 126 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCc-EEEEEECcccccccC
Confidence 899999999998888888889999999999998532 11 112222322332 2456 899999999874211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... ++...++...+ +.++++||++|+|+.+
T Consensus 127 ~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 127 VSY----EEGEAFAKEHG-----LIFMETSAKTASNVEE 156 (168)
T ss_pred CCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111 12222333333 4689999999999976
No 134
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.64 E-value=1.7e-15 Score=144.53 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=91.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+++|++... .... . ...+.+. .....+......+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~----------------------~-----~t~~~~~-~~~~~~~~~~~~~ 51 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEY----------------------D-----PTIEDSY-RKQVVIDGETCLL 51 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCc----------------------C-----CcchheE-EEEEEECCEEEEE
Confidence 5799999999999999999985311 0000 0 0001011 1111222233567
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~e 423 (694)
.||||||+++|...+...+..+|++++|+|..... .+ .........+.+. .++| +|||+||+|+... ..
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~-~~ 123 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---SF---EDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAAR-TV 123 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc-ee
Confidence 89999999999888888899999999999988632 11 1111122222222 3556 8999999998742 11
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ..++..+.+..+ ++++++||++|.|+.+
T Consensus 124 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 124 S----SRQGQDLAKSYG-----IPYIETSAKTRQGVEE 152 (162)
T ss_pred c----HHHHHHHHHHhC-----CeEEEecCCCCCCHHH
Confidence 1 112222333333 4689999999999977
No 135
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.2e-15 Score=152.89 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe---cCC
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---SKN 343 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~---~~~ 343 (694)
++|+++|.+++|||||+++|++.. .. ....+.+..+.....+. ...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~--~~-----------------------------~~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI--FS-----------------------------QHYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------CCCCCceeEEEEEEEEEECCCCE
Confidence 479999999999999999998421 10 00012122222222233 335
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH-------HcCCCcEEEEEeccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-------SFGVDQLIVAVNKMD 416 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-------~lgip~iIVVVNK~D 416 (694)
..+.||||||++.|...+...+..+|++|+|+|.+... .|. .....+..+. ..++| +|+|.||+|
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~---s~~----~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~D 121 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPS---TFE----AVLKWKADLDSKVTLPNGEPIP-CLLLANKCD 121 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhhcccCCCCCc-EEEEEECCC
Confidence 67899999999999888888889999999999998642 111 1111111111 13456 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+.+..... .+++..+.+..++ .+++++||++|.|+.+
T Consensus 122 l~~~~~~~----~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e 158 (201)
T cd04107 122 LKKRLAKD----GEQMDQFCKENGF----IGWFETSAKEGINIEE 158 (201)
T ss_pred cccccccC----HHHHHHHHHHcCC----ceEEEEeCCCCCCHHH
Confidence 86311111 2233344444332 4689999999999977
No 136
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.64 E-value=5.7e-15 Score=140.54 Aligned_cols=150 Identities=23% Similarity=0.251 Sum_probs=98.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
...+|+++|.+|+|||||+++|++....+... ....+.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccC------------------------------CCCceeceEEEEEEcCCe
Confidence 35789999999999999999998542211100 012233322333444567
Q ss_pred EEEEEeCCCccch--------HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 345 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 345 ~v~liDtPGh~~f--------~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
.+.||||||+... .......+..+|++++|+|+.... .......+..+...+.| +++|+||+|
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--------GEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--------CchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 8999999996543 223445677899999999998752 12344555666666788 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+... .....+....+.... ...+++++|++++.|+.+
T Consensus 123 l~~~-~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 123 LVKD-KEDLLPLLEKLKELG-------PFAEIFPISALKGENVDE 159 (168)
T ss_pred cccc-HHHHHHHHHHHHhcc-------CCCceEEEEeccCCChHH
Confidence 8731 233333333333221 134679999999999976
No 137
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.63 E-value=6.3e-15 Score=142.58 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=93.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--Ce
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~--~~ 344 (694)
++|+++|++|+|||||+++|++..... ...+.+..+.....+... ..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-------------------------------CcCCccceEEEEEEEEECCEEE
Confidence 479999999999999999998532100 000111112222223333 34
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc------CCCcEEEEEeccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQLIVAVNKMDAV 418 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l------gip~iIVVVNK~Dlv 418 (694)
.+.|||+||+..|.......++.+|++|+|+|+..... + .......-.++..+ ++| +++|+||+|+.
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---F---ESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 57799999999998888888999999999999986421 1 11111111223322 566 89999999997
Q ss_pred ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.......+ ++..+++..+ .++++++||++|.|+.+
T Consensus 123 ~~~~~~~~----~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 123 EKRQVSTK----KAQQWCQSNG----NIPYFETSAKEAINVEQ 157 (172)
T ss_pred cccccCHH----HHHHHHHHcC----CceEEEEECCCCCCHHH
Confidence 42111112 2223333333 25789999999999976
No 138
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.63 E-value=2.9e-15 Score=143.79 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEE--EEEEecCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFDSKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~--~~~~~~~~~ 344 (694)
++|+++|++++|||||+++|++..-. .+..+.++.+.. ...+.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-------------------------------SKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCccceeEEEEEEEECCeEE
Confidence 47999999999999999999843110 011122222222 233334457
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-------cCCCcEEEEEecccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-------FGVDQLIVAVNKMDA 417 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-------lgip~iIVVVNK~Dl 417 (694)
.+.||||||+..|...+...+..+|++|+|+|++... .+. ....+...+.+. .+.| +|+|+||+|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 122 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQ---SFE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDL 122 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHH---HHH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhc
Confidence 8899999999999887777888999999999998642 111 111112122222 2344 9999999998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+......+ +...+....+ ++++++||++|.|+.+
T Consensus 123 ~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 123 TKHRAVSED----EGRLWAESKG-----FKYFETSACTGEGVNE 157 (168)
T ss_pred ccccccCHH----HHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 731111111 1112222222 4689999999999976
No 139
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.63 E-value=2e-15 Score=178.21 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=103.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+.++|+++|++|+|||||+|+|++....+ + ..+|+|++.....+.+++.
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v-----------------g--------------n~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV-----------------G--------------NWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc-----------------C--------------CCCCceEeeEEEEEEcCce
Confidence 35789999999999999999998532211 1 1288999988888889999
Q ss_pred EEEEEeCCCccchHHH--------H--Hhh--cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005478 345 HVVVLDSPGHKDFVPN--------M--ISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~--------~--i~~--~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVV 412 (694)
.+.|+||||+.+|... . ... ...+|++|+|+|++... ........+..+|+| +|+|+
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le----------r~l~l~~ql~e~giP-vIvVl 119 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE----------RNLYLTLQLLELGIP-CIVAL 119 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch----------hhHHHHHHHHHcCCC-EEEEE
Confidence 9999999998876421 1 112 23699999999998742 223344556778999 89999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||+|+.+. ..+. ..+..+.+.+| ++++++||.+|+|+.+
T Consensus 120 NK~Dl~~~--~~i~---id~~~L~~~LG-----~pVvpiSA~~g~GIde 158 (772)
T PRK09554 120 NMLDIAEK--QNIR---IDIDALSARLG-----CPVIPLVSTRGRGIEA 158 (772)
T ss_pred Echhhhhc--cCcH---HHHHHHHHHhC-----CCEEEEEeecCCCHHH
Confidence 99998742 1221 12222223344 4789999999999976
No 140
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=4.1e-15 Score=146.93 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=95.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|..++|||||+.+|... .... .....|.+ ...++..+.
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~--~~~~----------------------------~~pt~g~~----~~~~~~~~~ 61 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLG--EIVT----------------------------TIPTIGFN----VETVEYKNI 61 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCcc----------------------------ccCCccee----EEEEEECCE
Confidence 4578999999999999999999731 1100 01112222 223455778
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHHH---cCCCcEEEEEeccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS---FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~---lgip~iIVVVNK~Dlv~~ 420 (694)
.+.|||+||+..|...+...+..+|++|+|+|++... .+ ......+ .++.. -++| ++||.||+|+.+.
T Consensus 62 ~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~---s~----~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV----VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH---HH----HHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 9999999999999888888899999999999998642 11 1111111 22211 2455 9999999998642
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+++.+.+. -..+....+.++++||++|+|+.+
T Consensus 134 --~~~~~~~~~l~----l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 134 --MNAAEITDKLG----LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred --CCHHHHHHHhC----ccccCCCceEEEeccCCCCCCHHH
Confidence 12222322221 111222334567899999999977
No 141
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.63 E-value=2.2e-15 Score=144.89 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=91.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.+|+|+|++|+|||||+++|++..... .. . ...+ +.......+......+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~----------------------~-----~t~~-~~~~~~~~~~~~~~~l 50 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DY----------------------D-----PTIE-DSYRKQIEIDGEVCLL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cc----------------------C-----Cchh-hhEEEEEEECCEEEEE
Confidence 379999999999999999998532110 00 0 0000 0001111223334678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~e 423 (694)
.||||||+++|.......+..+|++|+|+|+.... .+. ........+... ..+| +|+|+||+|+......
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~ 123 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ---SFE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVV 123 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccceE
Confidence 89999999999888888889999999999998642 111 111111122222 2456 8999999998742111
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. +....+.+..+ ++++++||++|.|+.+
T Consensus 124 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 124 ST----EEGKELARQWG-----CPFLETSAKERVNVDE 152 (164)
T ss_pred cH----HHHHHHHHHcC-----CEEEEeecCCCCCHHH
Confidence 11 11222222222 5789999999999976
No 142
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.63 E-value=4.6e-15 Score=143.27 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=95.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--cCC
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKN 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~--~~~ 343 (694)
.++|+++|++|+|||||+++|++..... .....++.+.....+. ...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-------------------------------SYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceeEEEEEEEECCEE
Confidence 3689999999999999999998421100 0112222232222333 334
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~ 420 (694)
..+.||||||+.+|.......+..+|++|+|+|++... .| ....+.+..+..+ ++| +|+|.||+|+...
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~----~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~ 122 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF----NNVKQWLQEIDRYASENVN-KLLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---HH----HhHHHHHHHHHHhCCCCCc-EEEEEEChhcccc
Confidence 57899999999999888888889999999999998642 11 1223333333332 456 8999999998642
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.....+ +...+.+.++ ++++++||++|+|+.+
T Consensus 123 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 123 RVVDYS----EAQEFADELG-----IPFLETSAKNATNVEQ 154 (166)
T ss_pred cCCCHH----HHHHHHHHcC-----CeEEEEECCCCcCHHH
Confidence 221111 1222222222 5789999999999976
No 143
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=2.8e-15 Score=161.71 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=98.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-C
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-~ 342 (694)
+....|+|||.+|||||||+++|+.....+.. .+++|+......+.+ .
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~-------------------------------ypfTT~~p~~G~v~~~~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIAD-------------------------------YPFTTLHPNLGVVRVDD 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCC-------------------------------CCCceeCceEEEEEeCC
Confidence 44567999999999999999999964333221 145577666666665 5
Q ss_pred CeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-----cCCCcEEE
Q 005478 343 NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIV 410 (694)
Q Consensus 343 ~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIV 410 (694)
...++|+|+||..+ +...+++.+..+|++|+|||++... .+ .+.......+.. .+.| +||
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~---s~----e~~~~~~~EL~~~~~~L~~kp-~II 276 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD---PV----EDYKTIRNELEKYSPELADKP-RIL 276 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC---CH----HHHHHHHHHHHHhhhhcccCC-eEE
Confidence 57899999999642 5556777888999999999998542 11 122222222322 2455 899
Q ss_pred EEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 411 VVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+||+|+.+... .... .+..+++.. ..+++++||++++|+.+
T Consensus 277 V~NKiDL~~~~~-~~~~---~~~~~~~~~-----~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 277 VLNKIDLLDEEE-EREK---RAALELAAL-----GGPVFLISAVTGEGLDE 318 (335)
T ss_pred EEECcccCCchh-HHHH---HHHHHHHhc-----CCCEEEEEcCCCCCHHH
Confidence 999999874221 1111 111122222 24689999999999977
No 144
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.63 E-value=5.5e-15 Score=142.98 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=94.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+++|++..-.. . .....|++..............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--A---------------------------FVSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--C---------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 689999999999999999998421100 0 00012222222222222334679
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~~e 423 (694)
.||||||+.+|.......+..+|++|+|+|++... .+ .+..+.+..+... ..| ++||+||+|+.+....
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 124 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SF----NAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVV 124 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCC-EEEEEECcccCccccc
Confidence 99999999999888888899999999999987531 11 1223333333332 344 9999999999742211
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ +...+.+.++ ++++++||++|.|+.+
T Consensus 125 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 125 SSE----RGRQLADQLG-----FEFFEASAKENINVKQ 153 (165)
T ss_pred CHH----HHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111 1222223333 3689999999999976
No 145
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.63 E-value=1.1e-15 Score=131.47 Aligned_cols=82 Identities=38% Similarity=0.634 Sum_probs=78.5
Q ss_pred CcccceEeEEecCCCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCc
Q 005478 494 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (694)
Q Consensus 494 pl~~~I~~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~ 573 (694)
||+|+|+++|+.. |++ ++|+|++|+|++||+|+++|++..++|++|+.++.++++|.|||+|+|.|++++..++++|+
T Consensus 1 plr~~I~~v~~~~-g~v-v~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~ 78 (82)
T cd04089 1 PLRLPIIDKYKDM-GTV-VLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGF 78 (82)
T ss_pred CeEEEEEeEEEcC-CEE-EEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCC
Confidence 7999999999875 888 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeec
Q 005478 574 VLCH 577 (694)
Q Consensus 574 VL~~ 577 (694)
+||+
T Consensus 79 vl~~ 82 (82)
T cd04089 79 VLCS 82 (82)
T ss_pred EEeC
Confidence 9984
No 146
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.63 E-value=6.2e-15 Score=142.88 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=94.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.++|+++|.+|+|||||+++|++..-. .. .....|++.......+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~--~~---------------------------~~~t~~~~~~~~~~~~~~~~~~ 53 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN--PS---------------------------FISTIGIDFKIRTIELDGKKIK 53 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC--cc---------------------------cccCccceEEEEEEEECCEEEE
Confidence 478999999999999999999842110 00 0011122222222223333467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~ 422 (694)
+.||||||+++|.......+..+|++|+|+|++.+. .|. ...+.+..+.. .++| +|+|.||+|+.+...
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~ 125 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK---SFE----NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRV 125 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH---HHH----hHHHHHHHHHHhCCCCCc-EEEEEECcccccccC
Confidence 899999999998887777889999999999997642 111 12222222222 2456 899999999974221
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...++ ...+.+.++ .+++++||++|.|+.+
T Consensus 126 ~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 126 VSKEE----GEALADEYG-----IKFLETSAKANINVEE 155 (167)
T ss_pred CCHHH----HHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 12122 222232222 4689999999999976
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.63 E-value=2.7e-15 Score=161.70 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=96.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+....|+|+|.+|||||||+++|+.....+... +++|.......+...+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y-------------------------------~fTT~~p~ig~v~~~~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADY-------------------------------PFTTLVPNLGVVRVDD 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCC-------------------------------CCCccCCEEEEEEeCC
Confidence 456679999999999999999999543322111 2344444444445555
Q ss_pred -eEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-----cCCCcEEE
Q 005478 344 -YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIV 410 (694)
Q Consensus 344 -~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIV 410 (694)
..++|+||||+.+ +...+++.+..+|++|+|+|++.......+ .+.......+.. .+.| +||
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~----e~l~~l~~EL~~~~~~l~~kp-~II 278 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI----EDYEIIRNELKKYSPELAEKP-RIV 278 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH----HHHHHHHHHHHHhhhhhccCC-EEE
Confidence 8899999999742 445567778889999999999863111111 111222222222 2455 899
Q ss_pred EEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 411 VVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+||+|+... ...+++.+++.. .++ .+++++||++++|+.+
T Consensus 279 V~NK~DL~~~--~~~~~~~~~l~~---~~~-----~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 279 VLNKIDLLDE--EELAELLKELKK---ALG-----KPVFPISALTGEGLDE 319 (329)
T ss_pred EEeCccCCCh--HHHHHHHHHHHH---HcC-----CcEEEEEccCCcCHHH
Confidence 9999999742 223333333322 222 4689999999999976
No 148
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=164.78 Aligned_cols=144 Identities=22% Similarity=0.208 Sum_probs=108.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
..-++|+|+|.||+|||||+|+|++....|..+. +|+|.|+-..++..++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI------------------------------~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI------------------------------AGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCC------------------------------CCCccceEEEEEEECC
Confidence 4578999999999999999999998877776543 8999999999999999
Q ss_pred eEEEEEeCCCccc---h-----HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 344 YHVVVLDSPGHKD---F-----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 344 ~~v~liDtPGh~~---f-----~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
..+.|+||+|.++ . +......+..||.+++|+|++++. ..+....+. +...+.| +++|+||+
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~--------~~~d~~~~~-~~~~~~~-~i~v~NK~ 334 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPL--------DKEDLALIE-LLPKKKP-IIVVLNKA 334 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------chhhHHHHH-hcccCCC-EEEEEech
Confidence 9999999999654 2 333455678899999999999853 123334433 2334455 89999999
Q ss_pred cccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 416 Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+...... ..+ ... ...+++.+||++|+|+..
T Consensus 335 DL~~~~~~------~~~-~~~-------~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 335 DLVSKIEL------ESE-KLA-------NGDAIISISAKTGEGLDA 366 (454)
T ss_pred hccccccc------chh-hcc-------CCCceEEEEecCccCHHH
Confidence 99853220 001 111 123679999999999976
No 149
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.63 E-value=1.7e-15 Score=146.81 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=94.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+++|+... .... .....|.........+.....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FDTQ---------------------------LFHTIGVEFLNKDLEVDGHFV 54 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CCcC---------------------------cCCceeeEEEEEEEEECCeEE
Confidence 45899999999999999999998421 0000 001112221112222333456
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+++|...+...+..+|++|+|+|.+... .+..+.....+.+.... ..++| +|+|.||+|+...
T Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 129 (170)
T cd04116 55 TLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQ---SFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPER- 129 (170)
T ss_pred EEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccc-
Confidence 7889999999999888888889999999999988642 11111111111111111 12456 8999999998631
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... .+++.++++.+++ .+++++||++|.|+.+
T Consensus 130 ~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 130 QVS----TEEAQAWCRENGD----YPYFETSAKDATNVAA 161 (170)
T ss_pred ccC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHH
Confidence 111 1223333333332 4689999999999976
No 150
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.63 E-value=4.2e-15 Score=146.85 Aligned_cols=157 Identities=20% Similarity=0.215 Sum_probs=94.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE-ecCCe
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKNY 344 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~-~~~~~ 344 (694)
.++|+++|++|+|||||+++|++.... . .....|.+........ ...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~---------------------------~---~~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV---------------------------N---TVPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC---------------------------C---cCCccccceeEEEeeccCCCce
Confidence 478999999999999999999842110 0 0011222222111111 23567
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.+.||||||++.|...+...+..+|++|+|+|++... .+........+........+.| +|||+||+|+... ..
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~--~~ 126 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVE---RMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA--LS 126 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc--CC
Confidence 8999999999999887777788999999999998641 0100001112222223335677 9999999998631 11
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+++...+ .+ ...+. ...++++++||++|+|+.+
T Consensus 127 ~~~~~~~~-~~-~~~~~-~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 127 VSEVEKLL-AL-HELSA-STPWHVQPACAIIGEGLQE 160 (183)
T ss_pred HHHHHHHh-Cc-cccCC-CCceEEEEeecccCCCHHH
Confidence 11121111 11 11111 1135689999999999976
No 151
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=2.6e-15 Score=168.25 Aligned_cols=143 Identities=24% Similarity=0.278 Sum_probs=104.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++|+|||||+++|++....+. ....|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v------------------------------~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------ADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------------CCCCCCcccceEEEEEECCcEE
Confidence 5799999999999999999985432211 1136778777777777888999
Q ss_pred EEEeCCCccc----h----HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 347 VVLDSPGHKD----F----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 347 ~liDtPGh~~----f----~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
.||||||+.+ + ......++..+|++|+|+|+..+. .....+...+++..+.| +|+|+||+|+.
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~--------~~~~~~~~~~l~~~~~p-iilv~NK~D~~ 122 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL--------TPADEEIAKILRKSNKP-VILVVNKVDGP 122 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCc-EEEEEECccCc
Confidence 9999999987 3 333455678899999999998763 34455667778888888 99999999975
Q ss_pred ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+. .... .++ ..+++. .++++||++|.|+.+
T Consensus 123 ~~-~~~~----~~~----~~lg~~----~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 123 DE-EADA----YEF----YSLGLG----EPYPISAEHGRGIGD 152 (435)
T ss_pred cc-hhhH----HHH----HhcCCC----CCEEEEeeCCCCHHH
Confidence 31 1111 111 123432 358999999999976
No 152
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=4.9e-15 Score=147.30 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=93.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+++|+......... ....+.+.......+......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~----------------------------~~t~~~~~~~~~~~~~~~~~~~ 52 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF----------------------------IATVGIDFRNKVVTVDGVKVKL 52 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCc----------------------------CCcccceeEEEEEEECCEEEEE
Confidence 479999999999999999998432111000 0001112111122233334678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~~e 423 (694)
.||||||+.+|.......+..+|++|+|+|++... .+ ......+..+..+ ++| +|+|+||+|+......
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~----~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~ 124 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA---SF----DNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVV 124 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCc-EEEEEEcccchhcccc
Confidence 99999999999887777888999999999998642 11 1222233333333 456 8999999998631111
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. .+...+.+..+ ++++++||++|.|+.+
T Consensus 125 ~~----~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 125 KR----EDGERLAKEYG-----VPFMETSAKTGLNVEL 153 (191)
T ss_pred CH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 11 12222222333 4789999999999976
No 153
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=2.5e-15 Score=143.78 Aligned_cols=146 Identities=21% Similarity=0.199 Sum_probs=95.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|++++|||||+++|++... . . .....|++. ..+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~-~---------------------------~~~t~~~~~----~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V-T---------------------------TIPTIGFNV----ETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C-C---------------------------CCCCcCcce----EEEEECCEEEE
Confidence 589999999999999999995420 0 0 000112222 23444578899
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHH-HH---HcCCCcEEEEEecccccccchh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IR---SFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~l-l~---~lgip~iIVVVNK~Dlv~~~~e 423 (694)
|||+||+..|.......+..+|++++|+|+..+. .+ .....++.. .. ..+.| +++|+||+|+... .
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~----~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~--~ 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE---RI----EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGA--L 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHH---HH----HHHHHHHHHHHhCcccCCCc-EEEEeeccCCccc--c
Confidence 9999999998877777788999999999998641 01 122222221 12 23556 9999999998752 2
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+++.+.+... ......++++++||++|.|+.+
T Consensus 117 ~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 117 SVSELIEKLGLE----KILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred CHHHHHHhhChh----hccCCcEEEEEeeCCCCCCHHH
Confidence 233333333222 1122356899999999999976
No 154
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.62 E-value=9.1e-15 Score=140.92 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=94.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--C
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~--~ 343 (694)
.++|+++|.+++|||||+++|+...-.. +..+.++.+.....+... .
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------DSKSTIGVEFATRSIQIDGKT 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceEEEEEEEEECCEE
Confidence 3689999999999999999998432110 001222223333333333 3
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~ 420 (694)
..+.||||||+..|.......+..++++|+|+|++... .+ ....+.+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~ 123 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ---TF----ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 123 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhCCCCCe-EEEEEECcccccc
Confidence 57889999999998888888888999999999998532 11 111222232322 2455 8999999998742
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.....+ +...+.... .++++++||++|.|+.+
T Consensus 124 ~~~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 124 RAVPTE----EAKAFAEKN-----GLSFIETSALDGTNVEE 155 (165)
T ss_pred ccCCHH----HHHHHHHHc-----CCEEEEEECCCCCCHHH
Confidence 211111 222222222 25789999999999976
No 155
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.62 E-value=4.1e-15 Score=142.44 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=92.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|.+|+|||||+++|+...... .....|.++. ...+ .....+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~------------------------------~~~t~~~~~~--~~~~-~~~~~l~ 47 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT------------------------------TIPTVGFNVE--MLQL-EKHLSLT 47 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc------------------------------ccCccCcceE--EEEe-CCceEEE
Confidence 48999999999999999998431100 0001222221 1111 1357899
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccchhh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
||||||+..|...+...+..+|++|+|+|+.... .+ .....+...+++. .++| +++|+||+|+... ..
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--~~ 118 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA---RL---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGA--LT 118 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH---HH---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccC--cC
Confidence 9999999998888888889999999999998742 01 1111122222221 3566 9999999998642 11
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+++...+.. ..+.. ...++++++||++|+|+.+
T Consensus 119 ~~~i~~~~~~--~~~~~-~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 119 AEEITRRFKL--KKYCS-DRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred HHHHHHHcCC--cccCC-CCcEEEEecccccCCChHH
Confidence 2233332211 11111 1245789999999999976
No 156
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=3.8e-15 Score=166.79 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=100.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+....|+|||.+|||||||+++|+.....|.. .+++|+......+...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIad-------------------------------ypfTTl~P~lGvv~~~~ 205 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIAD-------------------------------YPFTTLVPNLGVVQAGD 205 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccc-------------------------------cCcccccceEEEEEECC
Confidence 45678999999999999999999964333211 15677777777777788
Q ss_pred eEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCcc-ccccccchhHHHHHHHHH----------HHcCC
Q 005478 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSF-EVGMNTAKGLTREHAQLI----------RSFGV 405 (694)
Q Consensus 344 ~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~-e~~~~~~~~qt~e~l~ll----------~~lgi 405 (694)
..|+|+||||..+ .....++.+..+|++|+|||++...- ...+..+.....+...+. ...+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 8999999999532 23445677888999999999974210 000100000111222222 12355
Q ss_pred CcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 406 p~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
| +|||+||+|+.+. .+..+. +...++..+ ++++++||++++|+.+
T Consensus 286 P-~IVVlNKiDL~da-~el~e~----l~~~l~~~g-----~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 286 P-RLVVLNKIDVPDA-RELAEF----VRPELEARG-----WPVFEVSAASREGLRE 330 (500)
T ss_pred C-EEEEEECccchhh-HHHHHH----HHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 6 8999999998742 112222 222233323 4789999999999977
No 157
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.61 E-value=4.4e-15 Score=143.11 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--Ce
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~--~~ 344 (694)
++|+++|.+|+|||||+++++.. ...... ..++.+.....+... ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEKY------------------------------DPTIEDSYRKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCccc------------------------------CCcchheEEEEEEECCEEE
Confidence 57999999999999999999832 111000 001111111223333 45
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+..|...+...+..+|++|+|+|.+... .+. ........+... .++| +|+|+||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS---TFN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 122 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhcc
Confidence 6789999999999988888899999999999987532 111 111112222222 3466 99999999987421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....+ +...+.+.++ ++++++||++|.|+.+
T Consensus 123 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 123 VVGKE----QGQNLARQWG-----CAFLETSAKAKINVNE 153 (164)
T ss_pred EEcHH----HHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 11111 1122222222 4789999999999976
No 158
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.61 E-value=1.1e-14 Score=142.41 Aligned_cols=148 Identities=13% Similarity=0.130 Sum_probs=93.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-----
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----- 340 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~----- 340 (694)
.++|+++|.+|+|||||+++|+.... .. +..+.+..+.....+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 52 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF--NP-----------------------------KFITTVGIDFREKRVVYNSSG 52 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------------------------cCCCccceEEEEEEEEEcCcc
Confidence 48899999999999999999984211 00 0001111122111111
Q ss_pred -------cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc----CCCcEE
Q 005478 341 -------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLI 409 (694)
Q Consensus 341 -------~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~iI 409 (694)
.....+.||||||+++|...+...+..+|++|+|+|++... .+. .....+..+... +.| ++
T Consensus 53 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 53 PGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ---SFL----NVRNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred ccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCc-EE
Confidence 12467899999999999888888899999999999998631 111 112222223222 344 99
Q ss_pred EEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 410 VVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|.||+|+.+...... ++...+.+.++ ++++++||++|.|+.+
T Consensus 125 iv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 125 LCGNKADLEDQRQVSE----EQAKALADKYG-----IPYFETSAATGTNVEK 167 (180)
T ss_pred EEEeCccchhcCccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 9999999874211111 12233333333 4689999999999976
No 159
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.61 E-value=1.8e-15 Score=131.59 Aligned_cols=82 Identities=30% Similarity=0.415 Sum_probs=77.9
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC----eeeEEEeeeecccccceeccCCceeEEecccccccc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRV 569 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i 569 (694)
|+|+|+++|+++ .|+| ++|+|++|.|++||+++++|.+ ..++|++|++++.++++|.|||+|+|.|++++..++
T Consensus 1 ~~~~I~~vf~v~g~GtV-v~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i 79 (87)
T cd03694 1 AEFQIDEIYSVPGVGTV-VGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLL 79 (87)
T ss_pred CEEEEEeEEEcCCcceE-EEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHc
Confidence 579999999998 9998 8999999999999999999984 689999999999999999999999999999999999
Q ss_pred ccCceeec
Q 005478 570 MSGGVLCH 577 (694)
Q Consensus 570 ~rG~VL~~ 577 (694)
++|+|||+
T Consensus 80 ~~G~vl~~ 87 (87)
T cd03694 80 RKGMVLVS 87 (87)
T ss_pred CCccEEeC
Confidence 99999984
No 160
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.61 E-value=4.1e-15 Score=147.15 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=95.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+..+|+++|+.|+|||||+++|.+..... ...|+......+...+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~----------------------------------~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ----------------------------------HVPTLHPTSEELTIGNI 63 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc----------------------------------cCCccCcceEEEEECCE
Confidence 45789999999999999999998421100 00011112233445678
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHH---HcCCCcEEEEEeccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIR---SFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~---~lgip~iIVVVNK~Dlv~~ 420 (694)
.+.++|+||+..+...+...+..+|++|+|+|+.... .+ ....+.+ .++. ..+.| +||++||+|+..
T Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~---s~----~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~- 134 (190)
T cd00879 64 KFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE---RF----QESKEELDSLLSDEELANVP-FLILGNKIDLPG- 134 (190)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH---HH----HHHHHHHHHHHcCccccCCC-EEEEEeCCCCCC-
Confidence 8999999999998877777889999999999998531 11 1112222 2222 23466 999999999864
Q ss_pred chhhHhHHHHhhccchhc-------ccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRS-------CGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~-------~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....+++.+.+...-.. ..-....+.++++||++|+|+.+
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e 181 (190)
T cd00879 135 -AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGE 181 (190)
T ss_pred -CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHH
Confidence 11223333333211000 00001235789999999999977
No 161
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.61 E-value=1.7e-15 Score=142.56 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=82.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|++|+|||||+++|++... . ...|+.. ++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~----------------------~-------------~~~t~~~-----~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI----------------------L-------------YKKTQAV-----EYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc----------------------c-------------cccceeE-----EEcC---e
Confidence 699999999999999999984210 0 0012211 1112 6
Q ss_pred EEeCCCc----cchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 348 VLDSPGH----KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 348 liDtPGh----~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
+|||||+ ..+.+.+...+..+|++|+|+|++.+.. .+..+ +...++.| +|+|+||+|+.+. ..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s--------~~~~~---~~~~~~~p-~ilv~NK~Dl~~~-~~ 105 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES--------RFPPG---FASIFVKP-VIGLVTKIDLAEA-DV 105 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc--------CCChh---HHHhccCC-eEEEEEeeccCCc-cc
Confidence 8999997 3455555566889999999999987631 11112 22233445 8999999998742 11
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ ++..+++..++ .+++++||++|.|+.+
T Consensus 106 ~~~----~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 106 DIE----RAKELLETAGA----EPIFEISSVDEQGLEA 135 (142)
T ss_pred CHH----HHHHHHHHcCC----CcEEEEecCCCCCHHH
Confidence 212 22233333332 3679999999999976
No 162
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.61 E-value=1.2e-14 Score=146.23 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=95.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--e
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~--~ 344 (694)
+.|+++|..++|||||+.+++... . ..+....++.+.....+..++ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~--f-----------------------------~~~~~~Ti~~~~~~~~i~~~~~~v 49 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT--F-----------------------------CEACKSGVGVDFKIKTVELRGKKI 49 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC--C-----------------------------CCcCCCcceeEEEEEEEEECCEEE
Confidence 358999999999999999998421 1 011112223333333344444 7
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||+|+++|...+..+++.+|++|||+|++... .|+ .....+..+... ++| +|+|.||+|+....
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~---Sf~----~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~ 121 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFD----DLPKWMKMIDKYASEDAE-LLLVGNKLDCETDR 121 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 7899999999999988888999999999999998742 121 122223333332 456 99999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
+... .+...+.+.. ..+.|+.+||++|.|+.+.
T Consensus 122 ~v~~----~~~~~~a~~~----~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 122 EISR----QQGEKFAQQI----TGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred ccCH----HHHHHHHHhc----CCCEEEEecCCCCCCHHHH
Confidence 1111 1111222221 1246899999999999873
No 163
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.61 E-value=4.7e-15 Score=142.17 Aligned_cols=148 Identities=17% Similarity=0.143 Sum_probs=90.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+++|+... ..... . ...+-. ......+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~----------------------~-----~t~~~~-~~~~~~~~~~~~~l 51 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKY----------------------D-----PTIEDS-YRKQIEVDGQQCML 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCccc----------------------C-----Cchhhh-EEEEEEECCEEEEE
Confidence 589999999999999999998431 10000 0 000000 01111222334567
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccch
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~~~ 422 (694)
.||||||+++|...+...+..+|++|||+|.+... .+ ......+..+.. .++| +|+|+||+|+.+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~----~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 123 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS---SF----NDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERV 123 (163)
T ss_pred EEEECCCccccchHHHHHhhcCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCCC-EEEEEECccccccce
Confidence 89999999999888777888999999999997632 11 112222222222 2456 899999999864211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... ++...+.+.++ .+++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 124 VSR----EEGQALARQWG-----CPFYETSAKSKINVDE 153 (163)
T ss_pred ecH----HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 111 11112222222 5789999999999976
No 164
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.61 E-value=6.7e-15 Score=146.08 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+|+|++++|||||+++|++...... ......|.+.......+......+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~~~~l 52 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG----------------------------PYQNTIGAAFVAKRMVVGERVVTL 52 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc----------------------------CcccceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999985311100 000011222222222222233567
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccchhh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~e~ 424 (694)
.||||||+.+|.......+..+|++|||+|++... .+ ......+..+... ++| +|+|+||+|+.......
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~----~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~ 124 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS---SF----ERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSL 124 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH---HH----HHHHHHHHHHHhcCCCCC-EEEEEEccccccccccc
Confidence 79999999888777766778999999999997641 01 1122333333333 566 99999999986422111
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
......++..+....+ ++++++||++|.|+.+
T Consensus 125 ~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 125 RQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDE 156 (193)
T ss_pred CccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 0000122233333222 4689999999999976
No 165
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.61 E-value=6.8e-15 Score=144.31 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|..++|||||+.+|... ... . .....|.. ...+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~--~~~-------------------------~---~~~t~~~~----~~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLG--ESV-------------------------T---TIPTIGFN----VETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------C---cCCccccc----eEEEEECCE
Confidence 4588999999999999999999621 100 0 00111211 122334678
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-HH---cCCCcEEEEEeccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RS---FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~---lgip~iIVVVNK~Dlv~~ 420 (694)
.+.||||||+..|...+...+..+|++|+|+|++... .+ ....+.+..+ .. -++| ++||.||+|+.+.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~---s~----~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 129 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD---RI----DEAREELHRMLNEDELRDAV-ILVFANKQDLPDA 129 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH---HH----HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC
Confidence 8999999999999888888889999999999998632 01 1223333222 21 2455 9999999998642
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ..+++...+... ......+.++++||++|.|+.+
T Consensus 130 ~--~~~~i~~~~~~~----~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 130 M--KAAEITEKLGLH----SIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred C--CHHHHHHHhCcc----ccCCCcEEEEEeeCCCCCCHHH
Confidence 1 122233322211 1112345678999999999977
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.61 E-value=2.5e-15 Score=145.30 Aligned_cols=131 Identities=23% Similarity=0.264 Sum_probs=86.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|++|+|||||+++|.+... + ...|..+ .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~----------------------------------~~~~~~v---~~~~~----~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L----------------------------------ARKTQAV---EFNDK----G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c----------------------------------CccceEE---EECCC----C
Confidence 699999999999999999873210 0 0012111 11111 2
Q ss_pred EEeCCCc----cchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 348 VLDSPGH----KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 348 liDtPGh----~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
+|||||. .++...++.++..+|++|+|+|++.+.. ....+.+.+ ..+.| +++++||+|+.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s--------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~-- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES--------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD-- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc--------ccCHHHHhc--cCCCC-eEEEEEccccCccc--
Confidence 6999995 5677777888899999999999987631 111222221 23456 89999999986422
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+ .+..+++..++ ..+++++||++|+|+.+
T Consensus 108 -~~----~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 108 -VA----ATRKLLLETGF---EEPIFELNSHDPQSVQQ 137 (158)
T ss_pred -HH----HHHHHHHHcCC---CCCEEEEECCCccCHHH
Confidence 22 23334444454 25889999999999977
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=5.7e-16 Score=172.09 Aligned_cols=144 Identities=18% Similarity=0.157 Sum_probs=92.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe-
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY- 344 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~- 344 (694)
.++|+|+|.+|+|||||+|+|++....+ ....+.|++.....+.+.+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v-------------------------------~~~~~tTld~~~~~i~l~~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYA-------------------------------ADQLFATLDPTLRRIDVADVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee-------------------------------ccCCCCCcCCceEEEEeCCCC
Confidence 3579999999999999999998532211 11245666666656665543
Q ss_pred EEEEEeCCCccch--------HHHHHhhcccCCEEEEEEecCCCccccccccchhHH---HHHHHHHHHcCCCcEEEEEe
Q 005478 345 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT---REHAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 345 ~v~liDtPGh~~f--------~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt---~e~l~ll~~lgip~iIVVVN 413 (694)
.+.|+||||..+. +..++..+..||++|+|+|++++.+. .+. ...+..+...++| +|+|+|
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~-------e~l~~v~~iL~el~~~~~p-vIiV~N 317 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQ-------ENIEAVNTVLEEIDAHEIP-TLLVMN 317 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHH-------HHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 8899999997331 23345667889999999999875321 121 2223333233566 899999
Q ss_pred cccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 414 K~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+|+....... +.. ...++ ..++++||++|.|+.+
T Consensus 318 KiDL~~~~~~~---~~~------~~~~~----~~~v~ISAktG~GIde 352 (426)
T PRK11058 318 KIDMLDDFEPR---IDR------DEENK----PIRVWLSAQTGAGIPL 352 (426)
T ss_pred cccCCCchhHH---HHH------HhcCC----CceEEEeCCCCCCHHH
Confidence 99987421111 110 01121 1248899999999976
No 168
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=6.1e-15 Score=143.28 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=96.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+++|.+..... .....|.++ ..+...+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~------------------------------~~~t~g~~~----~~i~~~~~ 58 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH------------------------------ITPTQGFNI----KTVQSDGF 58 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc------------------------------cCCCCCcce----EEEEECCE
Confidence 46889999999999999999998421100 001123222 23344578
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.+.+||+||+..|...+...+..+|++++|+|+.... .+..........+......++| +++++||+|+... ..
T Consensus 59 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~--~~ 132 (173)
T cd04155 59 KLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK---RLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA--AP 132 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC--CC
Confidence 8999999999988887777888999999999998531 0100001111111112234677 8999999998742 22
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+++.+.+. ...+....++++++||++|+|+.+
T Consensus 133 ~~~i~~~l~----~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 133 AEEIAEALN----LHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred HHHHHHHcC----CcccCCCeEEEEEeECCCCCCHHH
Confidence 233333322 112222334678999999999976
No 169
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.61 E-value=8.1e-15 Score=138.62 Aligned_cols=146 Identities=20% Similarity=0.179 Sum_probs=93.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEE
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~l 348 (694)
|+++|++|+|||||+++|.+..... +..+.+..+. ..+...+..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-------------------------------~~~~t~~~~~--~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-------------------------------DTIPTVGFNM--RKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-------------------------------CccCCCCcce--EEEEECCEEEEE
Confidence 8999999999999999998431110 0001111111 223345678999
Q ss_pred EeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH----HcCCCcEEEEEecccccccchhh
Q 005478 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 349 iDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
||+||+..|...+...+..+|++++|+|+.... . ..+..+.+..+. ..++| +++|+||+|+.+. ..
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~----~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~--~~ 118 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT---A----LEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGA--LS 118 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH---H----HHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC--cC
Confidence 999999999988888899999999999998631 0 112222222221 23566 8999999998752 22
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+.+...+.. .. .....++++++||++|.|+.+
T Consensus 119 ~~~~~~~~~~--~~--~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 119 VDELIEQMNL--KS--ITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred HHHHHHHhCc--cc--ccCCceEEEEEEeccCCChHH
Confidence 2222222211 11 111346789999999999976
No 170
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.61 E-value=1e-14 Score=141.07 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=92.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+++++... ...... ...+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~~~---------------------------~t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRESYI---------------------------PTIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCcC---------------------------CcchheE-EEEEEECCEEEEE
Confidence 679999999999999999998421 100000 0001011 1112233345678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEeccccccc
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVVNK~Dlv~~ 420 (694)
.||||||+.+|......++..+|++|+|+|.+.... + ......+..++. .++| +|+|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~----~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---L----EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHK 123 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---H----HHHHHHHHHHHHHhcCCCCCCC-EEEEEECcccccc
Confidence 999999999998877777889999999999986421 1 122333333333 2466 8999999998642
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+-..+ +...+.... .++++++||++|+|+.+
T Consensus 124 ~~v~~~----~~~~~~~~~-----~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 124 REVSSN----EGAACATEW-----NCAFMETSAKTNHNVQE 155 (165)
T ss_pred CeecHH----HHHHHHHHh-----CCcEEEeecCCCCCHHH
Confidence 111111 111111121 24689999999999976
No 171
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=6e-15 Score=145.93 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=97.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+.++|+++|.+|+|||||+++|++...... ....+.+ ...+...+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~------------------------------~~t~~~~----~~~~~~~~~ 61 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH------------------------------QPTQHPT----SEELAIGNI 61 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc------------------------------CCccccc----eEEEEECCE
Confidence 348899999999999999999984311000 0011111 223344678
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHH-HHH---HcCCCcEEEEEeccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIR---SFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~-ll~---~lgip~iIVVVNK~Dlv~~ 420 (694)
.+.++||||+..+...+..++..+|++|+|+|++... .+ ....+.+. ++. ..++| +++|+||+|+...
T Consensus 62 ~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~---~~----~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 62 KFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE---RF----AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH---HH----HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 8999999999998888888899999999999998641 01 12222222 221 24666 9999999998631
Q ss_pred chhhHhHHHHhhccchhc--c-cccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRS--C-GFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~--~-g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+++.+.+.-.-.. . ........++++||++|+|+.+
T Consensus 134 --~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 175 (184)
T smart00178 134 --ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGE 175 (184)
T ss_pred --CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHH
Confidence 1223344444211100 0 0011345789999999999976
No 172
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.61 E-value=7.2e-15 Score=142.19 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=94.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|+.++|||||+++|+... .... .....|.+.......+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMAD---------------------------CPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCcccceeEEEEEEEECCEEEEE
Confidence 689999999999999999998421 1000 00011222222222333334678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~~e 423 (694)
.||||||+..|...+...+..+|++|+|+|++... .| ....+.+..+..+ +.| +|+|.||+|+......
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~ 125 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TY----NHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV 125 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc
Confidence 99999999999988888899999999999998642 11 1222233323222 344 8999999998742211
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ +...+.+.. .++++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~-----~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 126 TYE----EAKQFADEN-----GLLFLECSAKTGENVED 154 (166)
T ss_pred CHH----HHHHHHHHc-----CCEEEEEECCCCCCHHH
Confidence 112 222233332 24789999999999977
No 173
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.61 E-value=7.6e-15 Score=173.64 Aligned_cols=145 Identities=23% Similarity=0.310 Sum_probs=107.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+|+|++|+|||||+++|++....+. +..+|+|.+.....+++.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv------------------------------~~~pGvT~d~~~~~~~~~~~ 323 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVV------------------------------EDTPGVTRDRVSYDAEWAGT 323 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCeeEEEEEEEEEECCE
Confidence 457899999999999999999995432221 22378898888777888899
Q ss_pred EEEEEeCCCccc--------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 345 ~v~liDtPGh~~--------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
.+.||||||+.. +...+..++..+|++|+|+|++.+. .....+.+.+++..+.| +|+|+||+|
T Consensus 324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~--------~~~d~~i~~~Lr~~~~p-vIlV~NK~D 394 (712)
T PRK09518 324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL--------TSTDERIVRMLRRAGKP-VVLAVNKID 394 (712)
T ss_pred EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 999999999653 4555666788999999999998763 34555667778888888 999999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+... ... . ..+ ..+++. ..+++||++|.|+.+
T Consensus 395 ~~~~-~~~---~----~~~-~~lg~~----~~~~iSA~~g~GI~e 426 (712)
T PRK09518 395 DQAS-EYD---A----AEF-WKLGLG----EPYPISAMHGRGVGD 426 (712)
T ss_pred cccc-hhh---H----HHH-HHcCCC----CeEEEECCCCCCchH
Confidence 8642 111 1 111 123432 237999999999976
No 174
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=9.5e-15 Score=141.21 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC-
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~- 343 (694)
...+|+++|++|+|||||+++|+...-. ......++.+.....+...+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 54 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-------------------------------PGQGATIGVDFMIKTVEIKGE 54 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCceeeEEEEEEEEECCE
Confidence 4588999999999999999999842110 00012222333333344444
Q ss_pred -eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 005478 344 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 344 -~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~ 419 (694)
..+.|||+||+..|...+...+..+|++|+|+|+..+. .+. .....+..++. .++| +|+|+||+|+..
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~ 126 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFR----CLPEWLREIEQYANNKVI-TILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 56889999999999988888899999999999998642 111 11122222232 3566 789999999864
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ ....+...+.... ..+++++||++|.|+.+
T Consensus 127 ~~~-i~~~~~~~~~~~~--------~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 127 RRE-VSQQRAEEFSDAQ--------DMYYLETSAKESDNVEK 159 (169)
T ss_pred ccc-cCHHHHHHHHHHc--------CCeEEEeeCCCCCCHHH
Confidence 221 1112222222211 24689999999999976
No 175
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.61 E-value=5.1e-15 Score=144.08 Aligned_cols=148 Identities=19% Similarity=0.156 Sum_probs=93.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|..++|||||+++|++.. ... ...|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~--------------------------------~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQ--------------------------------PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCC--------------------------------cCCcCceeEEEEEECCEEEE
Confidence 58999999999999999998421 000 00122222233455788999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--c-CCCcEEEEEecccccccchhh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--F-GVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--l-gip~iIVVVNK~Dlv~~~~e~ 424 (694)
||||||+.+|...+...+..+|++|+|+|++... .+ .....+...++.. . +.| ++||.||+|+... ..
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~--~~ 117 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD---RV---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA--LS 117 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHH---HH---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC--CC
Confidence 9999999999888888889999999999998631 11 1111222223322 2 245 9999999998631 12
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+++.+.+ .+. ..+. ...+.++++||++|.|+.+
T Consensus 118 ~~~~~~~~-~~~-~~~~-~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 118 VEEMTELL-SLH-KLCC-GRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred HHHHHHHh-CCc-cccC-CCcEEEEeCcCCCCCCHHH
Confidence 22222222 111 1111 1235688999999999977
No 176
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=3.9e-15 Score=163.64 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=98.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC-
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~- 343 (694)
....|+|||.+|||||||+|+|+.....+.. .+++|+......+...+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~-------------------------------~p~TT~~p~~Giv~~~~~ 206 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVAD-------------------------------YPFTTLVPNLGVVRVDDE 206 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccC-------------------------------CCCCccCcEEEEEEeCCC
Confidence 4456999999999999999999965432221 15567666666666554
Q ss_pred eEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEE
Q 005478 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVA 411 (694)
Q Consensus 344 ~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVV 411 (694)
..++|+||||..+ +...++..+..+|++|+|||++..... ....+....+..+.. .+.| +|+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~----d~~e~~~~l~~eL~~~~~~L~~kP-~IlV 281 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS----DPVENARIIINELEKYSPKLAEKP-RWLV 281 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc----ChHHHHHHHHHHHHhhhhhhcCCC-EEEE
Confidence 5699999999643 455677788999999999998721000 011222333333333 2456 8999
Q ss_pred EecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 412 VNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+||+|+.. ...+.+. +..+.+.+++ ..+++++||+++.|+.+
T Consensus 282 lNKiDl~~--~~el~~~---l~~l~~~~~~---~~~Vi~ISA~tg~GIde 323 (390)
T PRK12298 282 FNKIDLLD--EEEAEER---AKAIVEALGW---EGPVYLISAASGLGVKE 323 (390)
T ss_pred EeCCccCC--hHHHHHH---HHHHHHHhCC---CCCEEEEECCCCcCHHH
Confidence 99999874 2222222 2222222232 13579999999999976
No 177
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=8.4e-15 Score=146.89 Aligned_cols=145 Identities=18% Similarity=0.201 Sum_probs=91.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++|+|+|++|+|||||+++|++....+. ...+.|++.....+...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE-------------------------------DQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC-------------------------------CccceeccceeEEEEecC
Confidence 3468999999999999999999995321110 012234443334444444
Q ss_pred -eEEEEEeCCCccch--------HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEE
Q 005478 344 -YHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVA 411 (694)
Q Consensus 344 -~~v~liDtPGh~~f--------~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVV 411 (694)
..+.||||||+.+. ...++..+..+|++++|+|++.+.. ..+...+..++..+ ++| +|+|
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~-------~~~~~~~~~~l~~~~~~~~~-viiV 159 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDY-------EEQIETVEKVLKELGAEDIP-MILV 159 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCCh-------hhHHHHHHHHHHHcCcCCCC-EEEE
Confidence 38999999997331 1122334567999999999987531 12233334444444 345 9999
Q ss_pred EecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 412 VNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+||+|+.... ... ..+.. ...+++++||++|.|+.+
T Consensus 160 ~NK~Dl~~~~--~~~-------~~~~~-----~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 160 LNKIDLLDDE--ELE-------ERLEA-----GRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEccccCChH--HHH-------HHhhc-----CCCceEEEEcCCCCCHHH
Confidence 9999997521 111 11111 235789999999999976
No 178
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=9.9e-15 Score=147.49 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=95.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++|+|+|++|+|||||+++|++... . ......|.+.......+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~--~----------------------------~~~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--E----------------------------DLAPTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC--C----------------------------CcCCCceeEEEEEEEEECCEE
Confidence 3468999999999999999999984311 0 000112333333333333344
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHH-HHHHHHH----cCCCcEEEEEeccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE-HAQLIRS----FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e-~l~ll~~----lgip~iIVVVNK~Dlv 418 (694)
..+.||||||+++|......++..+|++|||+|+.... .|. ...+ ....+.. .++| +|+|+||+|+.
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~---sf~----~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 133 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE---TFT----NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRE 133 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 67899999999999888888899999999999998642 111 1111 1112221 2445 88999999987
Q ss_pred ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....... ++...+.... .++++++||++|.|+.+
T Consensus 134 ~~~~i~~----~~~~~~~~~~-----~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 134 SERDVSR----EEGMALAKEH-----GCLFLECSAKTRENVEQ 167 (211)
T ss_pred ccCccCH----HHHHHHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 4211111 1112222222 24689999999999977
No 179
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=7.4e-15 Score=159.62 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=95.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-CC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 343 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-~~ 343 (694)
..++|+++|++|+|||||+|+|++....+ ....+.|++.....+.. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v-------------------------------~~~~~tT~d~~~~~i~~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYA-------------------------------ADQLFATLDPTTRRLDLPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceee-------------------------------ccCCccccCCEEEEEEeCCC
Confidence 44789999999999999999999542111 11145566666666666 56
Q ss_pred eEEEEEeCCCc-cc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEE
Q 005478 344 YHVVVLDSPGH-KD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAV 412 (694)
Q Consensus 344 ~~v~liDtPGh-~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVV 412 (694)
..+.||||||. .+ -+..++..+..||++|+|+|++.+.. ..+......++..+ +.| +|+|+
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~-------~~~~~~~~~~L~~l~~~~~p-iIlV~ 308 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDR-------EEQIEAVEKVLEELGAEDIP-QLLVY 308 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCch-------HHHHHHHHHHHHHhccCCCC-EEEEE
Confidence 78999999997 22 12334556788999999999987531 12222233445554 455 89999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||+|+.+ ...... ... . ..+++++||++|.|+.+
T Consensus 309 NK~Dl~~--~~~v~~-------~~~--~----~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 309 NKIDLLD--EPRIER-------LEE--G----YPEAVFVSAKTGEGLDL 342 (351)
T ss_pred EeecCCC--hHhHHH-------HHh--C----CCCEEEEEccCCCCHHH
Confidence 9999974 222111 110 1 12579999999999976
No 180
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.60 E-value=5.6e-15 Score=141.66 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=95.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++|+|||||+++|++..... ......|.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 479999999999999999998432111 011223333333333333344678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccch
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~~~ 422 (694)
.||||||+..|.......+..+|++|+|+|+..... + . ....++..+.. .++| +++|+||+|+.....
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~-~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~ 123 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---F---T-NLETWLNELETYSTNNDIV-KMLVGNKIDKENREV 123 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---H---H-hHHHHHHHHHHhCCCCCCc-EEEEEECCccccccc
Confidence 999999999998877778889999999999986421 1 1 11122232322 3455 899999999873221
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ +...+.+.. .++++++||++|.|+.+
T Consensus 124 -~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 124 -TRE----EGLKFARKH-----NMLFIETSAKTRDGVQQ 152 (161)
T ss_pred -CHH----HHHHHHHHc-----CCEEEEEecCCCCCHHH
Confidence 111 222222222 35789999999999976
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.60 E-value=1.4e-14 Score=143.79 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=97.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+++|++..... ......|.|..+....+ +.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~---~~ 70 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLA-----------------------------RTSKTPGRTQLINFFEV---ND 70 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------cccCCCCceeEEEEEec---CC
Confidence 45789999999999999999999531000 01112455655444332 46
Q ss_pred EEEEEeCCCcc----------chHHHHH---hhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEE
Q 005478 345 HVVVLDSPGHK----------DFVPNMI---SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (694)
Q Consensus 345 ~v~liDtPGh~----------~f~~~~i---~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 411 (694)
.+.||||||+. .|..... .....++++++|+|+..+. .....+.+.++...++| ++++
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL--------KELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCC--------CHHHHHHHHHHHHcCCc-EEEE
Confidence 89999999952 3333323 3334457899999987653 23334556667778888 8999
Q ss_pred EecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 412 VNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+||+|+.. ....+.+...+...+... ..+++++||++|.|+.+
T Consensus 142 ~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 142 LTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDE 184 (196)
T ss_pred EECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHH
Confidence 99999874 233334444455554332 25779999999999976
No 182
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.60 E-value=5.8e-15 Score=165.62 Aligned_cols=139 Identities=22% Similarity=0.201 Sum_probs=97.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+|+|++....+. ...+|+|.+.....+..++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIV------------------------------TDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCcccccEEEEEEECCe
Confidence 457899999999999999999995322111 12367788877777888889
Q ss_pred EEEEEeCCCccchH--------HHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 345 ~v~liDtPGh~~f~--------~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
.+.||||||+.++. ......+..+|++|+|+|++.+.. ....+.+. ...+.| +|+|+||+|
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s--------~~~~~~l~--~~~~~p-iiiV~NK~D 332 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT--------EEDDEILE--ELKDKP-VIVVLNKAD 332 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC--------hhHHHHHH--hcCCCC-cEEEEEhhh
Confidence 99999999987643 224456788999999999987531 12222221 133556 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+..... .. .. ...+++++||++|.|+.+
T Consensus 333 L~~~~~--~~----------~~-----~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 333 LTGEID--LE----------EE-----NGKPVIRISAKTGEGIDE 360 (449)
T ss_pred ccccch--hh----------hc-----cCCceEEEEeeCCCCHHH
Confidence 974211 10 01 124679999999999976
No 183
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.60 E-value=1.2e-14 Score=145.88 Aligned_cols=148 Identities=20% Similarity=0.164 Sum_probs=86.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--e
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~--~ 344 (694)
++|+|+|.+|+|||||+++|++..- . .+..+.++.+.....+..++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f--~-----------------------------~~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF--P-----------------------------EEYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC--C-----------------------------cccCCccccccceeEEEECCEEE
Confidence 4799999999999999999984211 0 00011122122111222233 6
Q ss_pred EEEEEeCCCccchH--------HHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH------cCCCcEEE
Q 005478 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIV 410 (694)
Q Consensus 345 ~v~liDtPGh~~f~--------~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIV 410 (694)
.+.||||||+.+|. ......+..+|++|+|+|++... .| ......+..+.. -++| +|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S~----~~~~~~~~~i~~~~~~~~~~~p-iii 121 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---SF----HYVKLLRQQILETRPAGNKEPP-IVV 121 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcccCCCCCC-EEE
Confidence 78899999976542 11334567899999999998642 11 111122222221 3456 899
Q ss_pred EEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 411 VVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|.||+|+........ +++..+.+.. ..++|+++||++|.|+.+
T Consensus 122 vgNK~Dl~~~~~~~~----~~~~~~~~~~----~~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 122 VGNKRDQQRHRFAPR----HVLSVLVRKS----WKCGYLECSAKYNWHILL 164 (198)
T ss_pred EEECccccccccccH----HHHHHHHHHh----cCCcEEEecCCCCCCHHH
Confidence 999999964211111 1122222111 135789999999999977
No 184
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=2.2e-14 Score=137.98 Aligned_cols=151 Identities=18% Similarity=0.158 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-cCCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~-~~~~~ 345 (694)
++|+++|.+++|||||+++|.......... .....|.........+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---------------------------YLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---------------------------CCCceEEEEEEEEEEeCCCCEEE
Confidence 479999999999999999998421111000 00012222222222222 34578
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchh
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e 423 (694)
+.+|||||+..|...+...+..+|++|+|+|.+.... + ......+..+.. .++| +|+|+||+|+.+..+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 125 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---F----ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEV 125 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhCCCCC-EEEEEECcccccccCC
Confidence 9999999999988878888899999999999986421 1 111222233332 2566 8999999998642211
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... ... +.... ..+++++||++|.|+.+
T Consensus 126 ~~~~-~~~---~~~~~-----~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 126 TDAQ-AQA---FAQAN-----QLKFFKTSALRGVGYEE 154 (164)
T ss_pred CHHH-HHH---HHHHc-----CCeEEEEeCCCCCChHH
Confidence 1111 111 11112 24689999999999976
No 185
>PTZ00369 Ras-like protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=144.52 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=94.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+..++|+|+|++|+|||||++++++.... ... ....|.+. .....++...
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~---------------------------~~t~~~~~-~~~~~~~~~~ 52 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFI--DEY---------------------------DPTIEDSY-RKQCVIDEET 52 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC--cCc---------------------------CCchhhEE-EEEEEECCEE
Confidence 34689999999999999999999843110 000 00011111 1112233344
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-HH---cCCCcEEEEEecccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RS---FGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~---lgip~iIVVVNK~Dlv~ 419 (694)
..+.||||||+.+|...+..++..+|++|+|+|++... .|. ...+.+..+ .. -++| +|+|+||+|+.+
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~---s~~----~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~ 124 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS---SFE----EIASFREQILRVKDKDRVP-MILVGNKCDLDS 124 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 67889999999999988888889999999999998742 111 122222222 22 2556 899999999864
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...-... +...+.+.++ ++++++||++|.|+.+
T Consensus 125 ~~~i~~~----~~~~~~~~~~-----~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 125 ERQVSTG----EGQELAKSFG-----IPFLETSAKQRVNVDE 157 (189)
T ss_pred ccccCHH----HHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 2111111 1112222222 4789999999999976
No 186
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.59 E-value=3.8e-15 Score=129.59 Aligned_cols=84 Identities=36% Similarity=0.512 Sum_probs=78.7
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecC--CeeeEEEeeeecccccceeccCCceeEEecccccccccc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~r 571 (694)
|+|+|+++|+.+ .|++ ++|+|++|+|++||+|.++|. +..++|++|++++.++++|.|||+|+|.|++++..++.+
T Consensus 1 ~r~~V~~v~~~~g~G~v-v~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~r 79 (87)
T cd03697 1 FLMPIEDVFSIPGRGTV-VTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVER 79 (87)
T ss_pred CEeeEEEEEeCCCcEEE-EEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCC
Confidence 689999999988 8988 899999999999999999996 568899999999999999999999999999999899999
Q ss_pred CceeecCC
Q 005478 572 GGVLCHPD 579 (694)
Q Consensus 572 G~VL~~~~ 579 (694)
|+||++++
T Consensus 80 G~vl~~~~ 87 (87)
T cd03697 80 GMVLAKPG 87 (87)
T ss_pred ccEEecCC
Confidence 99999863
No 187
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=9.5e-15 Score=146.16 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=89.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--eE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--YH 345 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~--~~ 345 (694)
+|+++|+.|+|||||+++|++... .... ..++.+.....+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~------------------------------~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKY------------------------------RRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccC------------------------------CCchhhheeEEEEECCEEEE
Confidence 589999999999999999984311 0000 0011111112233333 67
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH----HcCCCcEEEEEeccccccc-
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQY- 420 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVVNK~Dlv~~- 420 (694)
+.||||||+.+|......++..+|++|+|+|+.... .+. .....+..+. ..++| +|||+||+|+...
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~ 120 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFE----EVERLREEILEVKEDKFVP-IVVVGNKADSLEEE 120 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc
Confidence 899999999999877777888999999999998642 111 1111111111 23567 9999999998742
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.....+... .... .. ...+++++||++|.|+.+
T Consensus 121 ~~v~~~~~~----~~~~-~~---~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 121 RQVPAKDAL----STVE-LD---WNCGFVETSAKDNENVLE 153 (198)
T ss_pred ccccHHHHH----HHHH-hh---cCCcEEEecCCCCCCHHH
Confidence 111111111 1111 11 124679999999999976
No 188
>COG2262 HflX GTPases [General function prediction only]
Probab=99.59 E-value=1.8e-15 Score=161.87 Aligned_cols=180 Identities=17% Similarity=0.142 Sum_probs=118.6
Q ss_pred ccccccCCCccccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHh
Q 005478 227 SSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAK 306 (694)
Q Consensus 227 ~l~~~~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~ 306 (694)
+.+++..+.+...++++++.....++ ..++.+.+...+.|+++|++|||||||+|+|++......+.
T Consensus 156 E~drR~ir~rI~~i~~eLe~v~~~R~---~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~---------- 222 (411)
T COG2262 156 ETDRRRIRRRIAKLKRELENVEKARE---PRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQ---------- 222 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecccc----------
Confidence 33344333333444444444443333 22334445678899999999999999999999543332222
Q ss_pred hhCCCccchhhccccchhhhccCeEEEEEEEEEecC-CeEEEEEeCCCccc--------hHHHHHhhcccCCEEEEEEec
Q 005478 307 LQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDA 377 (694)
Q Consensus 307 ~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-~~~v~liDtPGh~~--------f~~~~i~~~~~aD~aILVVDa 377 (694)
--.|.+...+.+... +..+.|-||-|+.+ -++.++..+..||++++|||+
T Consensus 223 ---------------------LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDa 281 (411)
T COG2262 223 ---------------------LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDA 281 (411)
T ss_pred ---------------------ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeec
Confidence 223667777777765 68999999999554 355667778889999999999
Q ss_pred CCCccccccccchhHHHHHHHHHHHcCC--CcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeeccc
Q 005478 378 SVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (694)
Q Consensus 378 ~~g~~e~~~~~~~~qt~e~l~ll~~lgi--p~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~ 455 (694)
+++. ...+......++..+|+ +++|+|+||+|++... .... .+... . + ..|++||++
T Consensus 282 Sdp~-------~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~-~~~~----~~~~~-----~--~--~~v~iSA~~ 340 (411)
T COG2262 282 SDPE-------ILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE-EILA----ELERG-----S--P--NPVFISAKT 340 (411)
T ss_pred CChh-------HHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch-hhhh----hhhhc-----C--C--CeEEEEecc
Confidence 9864 23555666677777755 3499999999988532 1111 11111 0 1 359999999
Q ss_pred CCCccc
Q 005478 456 NQNLVT 461 (694)
Q Consensus 456 G~nI~e 461 (694)
|+|+..
T Consensus 341 ~~gl~~ 346 (411)
T COG2262 341 GEGLDL 346 (411)
T ss_pred CcCHHH
Confidence 999965
No 189
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.59 E-value=1.4e-14 Score=140.05 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|++|+|||||+++|++..-... . .............+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE--Y----------------------------VPTVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--C----------------------------CCceeeeeEEEEEECCEEEEE
Confidence 5799999999999999999985321000 0 000000111111222345679
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccchhh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~e~ 424 (694)
.||||||+.+|.......+..+|++++|+|++... .+ .....+.+..+... ++| +|+|+||+|+......
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~- 122 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS---SF---ENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENT- 122 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhh-
Confidence 99999999988766666678899999999998631 11 11222233333332 366 9999999998753211
Q ss_pred Hh-------H-HHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FD-------S-IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~-------~-i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. . ...+...+....++ .+++++||++|.|+.+
T Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 123 LKKLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKE 163 (171)
T ss_pred hhhcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHH
Confidence 00 0 12222333333332 3789999999999976
No 190
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.59 E-value=2.1e-14 Score=140.27 Aligned_cols=149 Identities=16% Similarity=0.205 Sum_probs=92.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--CCeE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNYH 345 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~--~~~~ 345 (694)
+|+++|..++|||||+++++... .. .+-.+.+..+.....+.. ....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FD-----------------------------KNYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCceeeEEEEEEEEECCEEEE
Confidence 69999999999999999998421 10 000121222222223333 3467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-HHc--CCCcEEEEEecccccccch
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSF--GVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~l--gip~iIVVVNK~Dlv~~~~ 422 (694)
+.||||||+.+|.......++.+|++|||+|+.... .+ ....+++..+ +.. +.+++|+|.||+|+.+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA---SL----EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ 123 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence 899999999999988888899999999999997631 01 1222333322 222 1133899999999864211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
......+...+.+.++ .+++.+||++|.|+.+
T Consensus 124 --~~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 124 --YALMEQDAIKLAAEMQ-----AEYWSVSALSGENVRE 155 (170)
T ss_pred --ccccHHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 1111222222333322 4679999999999976
No 191
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.58 E-value=1.3e-14 Score=138.87 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=92.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEE--EEEEEEecCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT--VAVAYFDSKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~--~~~~~~~~~~~ 344 (694)
++|+++|.+|+|||||+++|++..-. ... .+.+.+ .....++....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~------------------------------~~~~~~~~~~~~~~~~~~~ 48 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDY------------------------------EPTKADSYRKKVVLDGEDV 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--ccc------------------------------CCcchhhEEEEEEECCEEE
Confidence 47999999999999999999943211 000 000000 01112233456
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+.+|.......+..+|++++|+|..... .+.. .......+.+. .++| +|+|+||+|+....
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~ 121 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---SFTA---TAEFREQILRVKDDDNVP-LLLVGNKCDLEDKR 121 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---HHHH---HHHHHHHHHHhcCCCCCC-EEEEEEcccccccc
Confidence 7999999999999988888899999999999987531 1111 11122222222 4677 89999999987521
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..... +...+.+.++ ++++++||++|.|+.+
T Consensus 122 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 122 QVSSE----EAANLARQWG-----VPYVETSAKTRQNVEK 152 (164)
T ss_pred ccCHH----HHHHHHHHhC-----CeEEEeeCCCCCCHHH
Confidence 11111 1112222223 4789999999999977
No 192
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.58 E-value=1.7e-14 Score=142.64 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|+.++|||||+.+|... ... . .....|..+ ..++..+.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~--~~~-------------------------~---~~~T~~~~~----~~~~~~~~ 61 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG--EVV-------------------------T---TIPTIGFNV----ETVEYKNL 61 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------------c---cCCccccce----EEEEECCE
Confidence 3578999999999999999999621 100 0 011122222 23345678
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--c-CCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--F-GVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--l-gip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+..|...+...+..+|++|+|+|++... .+ .....++..++.. + ..| +|||+||.|+.+..
T Consensus 62 ~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~---s~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 134 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE---RI---GDAREELERMLSEDELRDAV-LLVFANKQDLPNAM 134 (182)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCC
Confidence 9999999999999888888899999999999997531 11 1111122222222 2 344 99999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+++...+.. ..+....+.++++||++|.|+.+
T Consensus 135 --~~~~i~~~l~~----~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 135 --STTEVTEKLGL----HSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred --CHHHHHHHhCC----CcccCCcEEEEeeeCCCCCCHHH
Confidence 12223332221 11222345677999999999977
No 193
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.58 E-value=3.1e-14 Score=144.40 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=94.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec---CC
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KN 343 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~---~~ 343 (694)
++|+++|.+|+|||||+++|++.. +. .+..+-++.+.....+.. ..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~--~~-----------------------------~~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG--FG-----------------------------KSYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCceeEEEEEEEEEeCCCCE
Confidence 479999999999999999998421 10 011122333433333333 24
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc-----CCCcEEEEEeccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMDAV 418 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVVVNK~Dlv 418 (694)
..+.||||||+..|.......+..+|++|||+|++... .| ....+.+..+... ..+++|+|.||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~---s~----~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ---SF----ENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 68899999999988888778889999999999998642 11 1222233333322 113388999999986
Q ss_pred ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...... .++...+.+..+ ++++++||++|+|+.+
T Consensus 123 ~~~~v~----~~~~~~~~~~~~-----~~~~~iSAktg~gv~~ 156 (215)
T cd04109 123 HNRTVK----DDKHARFAQANG-----MESCLVSAKTGDRVNL 156 (215)
T ss_pred cccccC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 321111 112222333333 4679999999999977
No 194
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.58 E-value=3.8e-14 Score=142.02 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-- 342 (694)
..++|+|+|+.|+|||||+++|++..- . .+..+.+..+.....+...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF--S-----------------------------GSYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCcCccccceeEEEEEEECCE
Confidence 358999999999999999999984210 0 0001112222223333333
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEecccccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVVNK~Dlv~~~ 421 (694)
...+.||||||++.|...+...+..+|++|+|+|++... .| ......+..+.. ....+++||+||+|+.+..
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~---s~----~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SF----VNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 357889999999999888888889999999999998642 11 122223333332 2223389999999987421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... ..+...+.+.++ ++++++||++|.|+.+
T Consensus 127 ~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 127 VVE----TEDAYKFAGQMG-----ISLFETSAKENINVEE 157 (199)
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEEECCCCcCHHH
Confidence 111 112222332222 4789999999999977
No 195
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.58 E-value=4.1e-14 Score=137.67 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=90.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--CC
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~--~~ 343 (694)
.++|+++|++|+|||||+++|+... . ..+....+..+.....+.. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--F-----------------------------PERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCccccceeEEEEEEEEEECCeE
Confidence 4789999999999999999998321 0 0011122222222233333 34
Q ss_pred eEEEEEeCCCccchHH-HHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccc
Q 005478 344 YHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~-~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv 418 (694)
..+.||||||+.+|.. .....+..+|++|+|+|++.... + ......+..+.. -++| +|+|+||+|+.
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~ 122 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---F----HSLPSWIEECEQHSLPNEVP-RILVGNKCDLR 122 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---H----HhHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 7899999999998874 34556788999999999986431 1 122233333332 2466 89999999986
Q ss_pred ccchhhHhHHHHhhccchhcccccCCCceEEEeeccc---CCCccc
Q 005478 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVT 461 (694)
Q Consensus 419 ~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~---G~nI~e 461 (694)
...+.. .....+ +.+.. .++++++||++ +.|+.+
T Consensus 123 ~~~~~~-~~~~~~---~~~~~-----~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 123 EQIQVP-TDLAQR---FADAH-----SMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred hhcCCC-HHHHHH---HHHHc-----CCcEEEEeccCCcCCCCHHH
Confidence 421111 111112 22222 25789999999 666654
No 196
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=2.1e-14 Score=158.86 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=97.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC-
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~- 342 (694)
+....|+|+|.+|||||||+++|+.....|.. .+++|+......+...
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~-------------------------------ypfTTl~PnlG~v~~~~ 204 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIAN-------------------------------YHFTTLVPNLGVVETDD 204 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCcccc-------------------------------CCcceeceEEEEEEEeC
Confidence 34557999999999999999999965433321 1456666666656655
Q ss_pred CeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-----cCCCcEEE
Q 005478 343 NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIV 410 (694)
Q Consensus 343 ~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIV 410 (694)
+..++|+|+||... +...+++.+..+|++|+|||++...... +..+.......+.. .+.| +||
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~d----p~e~~~~i~~EL~~y~~~L~~kP-~IV 279 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRD----PIEDYEKINKELKLYNPRLLERP-QIV 279 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCC----hHHHHHHHHHHHhhhchhccCCc-EEE
Confidence 67899999999642 3455677788899999999997421000 01122222233332 3556 899
Q ss_pred EEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 411 VVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+||+|+.. ..+.++.+.+ .++ .+++++||++++|+.+
T Consensus 280 V~NK~DL~~-~~e~l~~l~~-------~l~-----~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 280 VANKMDLPE-AEENLEEFKE-------KLG-----PKVFPISALTGQGLDE 317 (424)
T ss_pred EEeCCCCcC-CHHHHHHHHH-------HhC-----CcEEEEeCCCCCCHHH
Confidence 999999743 2222222222 222 3679999999999977
No 197
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.9e-14 Score=139.20 Aligned_cols=153 Identities=17% Similarity=0.250 Sum_probs=102.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++|+++|..++|||||+-|+... .+.. ..|..-|...-.....+....
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~--~F~e---------------------------~~e~TIGaaF~tktv~~~~~~ 53 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKD--QFHE---------------------------NIEPTIGAAFLTKTVTVDDNT 53 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhC--cccc---------------------------ccccccccEEEEEEEEeCCcE
Confidence 45789999999999999999998721 1110 012222222222222333345
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEE--EEecccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV--AVNKMDAVQYS 421 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV--VVNK~Dlv~~~ 421 (694)
..+.||||+|+++|-...-.++++|++||+|+|.++.. .| ...+..+.-|....-|.+++ |.||+|+.+..
T Consensus 54 ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~---SF----~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEE---SF----EKAKNWVKELQRQASPNIVIALVGNKADLLERR 126 (200)
T ss_pred EEEEEEEcCCcccccccccceecCCcEEEEEEecccHH---HH----HHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence 78889999999999888888999999999999998742 12 23444555555544465655 89999998633
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+..+++ ...+....| ..|+.+||++|.|+.+
T Consensus 127 ~V~~~e----a~~yAe~~g-----ll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 127 EVEFEE----AQAYAESQG-----LLFFETSAKTGENVNE 157 (200)
T ss_pred cccHHH----HHHHHHhcC-----CEEEEEecccccCHHH
Confidence 333333 333443333 5789999999999977
No 198
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=3.2e-14 Score=137.90 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=92.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|+.|+|||||+++|+.... ... .. ......++.. .+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~--~~~-------------------------~~-~~~~~~~~~~---~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF--PEN-------------------------VP-RVLPEITIPA---DVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--Ccc-------------------------CC-CcccceEeee---eecCCeEEE
Confidence 3799999999999999999985311 000 00 0001122211 223456789
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHH-HHHHHHHHH--cCCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt-~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e 423 (694)
.||||||+..+...+...+..+|++|||+|+..+.. + .+. ..++..++. .++| +++|+||+|+.+....
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~----~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~ 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---L----ERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQ 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccch
Confidence 999999999888777778899999999999986421 1 111 122233333 2556 9999999999752211
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ....++..+.+.+. ...+++++||++|.|+.+
T Consensus 122 ~--~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 122 A--GLEEEMLPIMNEFR---EIETCVECSAKTLINVSE 154 (166)
T ss_pred h--HHHHHHHHHHHHHh---cccEEEEeccccccCHHH
Confidence 0 11122222222211 012689999999999976
No 199
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.58 E-value=2.2e-14 Score=139.47 Aligned_cols=147 Identities=22% Similarity=0.232 Sum_probs=94.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|..++|||||+++|++. .... .....|.+ ...+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~~---------------------------~~~t~g~~----~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPKK---------------------------VAPTVGFT----PTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCcc---------------------------ccCcccce----EEEEEECCEEEE
Confidence 4899999999999999999842 1000 00112222 234555788999
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccchh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~~~e 423 (694)
|+|+||+..|...+..++..+|++|+|+|++... .+ ......+..+.. .++| +++|+||+|+.+..
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s~----~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-- 116 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---RV----QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-- 116 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---HH----HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC--
Confidence 9999999999888888999999999999998641 11 122222222221 3556 99999999987522
Q ss_pred hHhHHHHhh--ccchhcccccCCCceEEEeecccC------CCccc
Q 005478 424 RFDSIKVQL--GTFLRSCGFKDASLTWIPLSALEN------QNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l--~~~l~~~g~~~~~v~~IpvSA~~G------~nI~e 461 (694)
...++.+.+ ..+.+..+ ..+.++++||++| .|+.+
T Consensus 117 ~~~~i~~~~~l~~~~~~~~---~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 117 LGADVIEYLSLEKLVNENK---SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred CHHHHHHhcCcccccCCCC---ceEEEEEeEceeCCCCccccCHHH
Confidence 122233222 22221111 2357899999998 67755
No 200
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.58 E-value=2.6e-14 Score=138.92 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=90.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|..|+|||||+++|+... .... .....|+.+.............+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l 51 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YVATLGVEVHPLDFHTNRGKIRF 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCC---------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999998321 1000 00111222211111222345678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-c-CCCcEEEEEecccccccchhh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVVVNK~Dlv~~~~e~ 424 (694)
.+|||||+++|.......+..+|++|+|+|++.+. .+ ......+..+.. . ++| +|+|+||+|+..... .
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~-~ 122 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV---TY----KNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKV-K 122 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCc-EEEEEEchhcccccC-C
Confidence 99999999988766666778899999999998642 11 111112222222 2 567 999999999873211 1
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. +...+.+. ...+++++||++|+|+.+
T Consensus 123 -~----~~~~~~~~-----~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 123 -A----KQITFHRK-----KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred -H----HHHHHHHH-----cCCEEEEEeCCCCCChHH
Confidence 1 11112211 235789999999999977
No 201
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.58 E-value=1.5e-14 Score=139.20 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=90.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||++++++. ...... ... .+ ........+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~--~~~~~~----------------------~~t-----~~-~~~~~~~~~~~~~~~l 51 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSG--TFIEKY----------------------DPT-----IE-DFYRKEIEVDSSPSVL 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCCCC----------------------CCc-----hh-heEEEEEEECCEEEEE
Confidence 58999999999999999999842 111000 000 00 0111112222233467
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccch
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~~~ 422 (694)
.||||||+++|...+..++..+|++|+|+|..... .+ ....+.+..+.. .++| +++|+||+|+.....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~ 123 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ---TF----QDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESERE 123 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCc
Confidence 89999999999888888889999999999998642 11 122222222222 3566 899999999864211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... +...+.+.++ ++++++||++|.|+.+
T Consensus 124 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 124 VSSA----EGRALAEEWG-----CPFMETSAKSKTMVNE 153 (163)
T ss_pred cCHH----HHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 1111 1112222222 4789999999999976
No 202
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=2.9e-14 Score=140.70 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=91.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEe-cCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFD-SKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~-~~~~~-~~~~ 344 (694)
++|+|+|..++|||||+++|++..-. .+..+.+..+.. ..... ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~i~~~~~~~~ 49 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-------------------------------EEYVPTVFENYVTNIQGPNGKII 49 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-------------------------------CCCCCeeeeeeEEEEEecCCcEE
Confidence 47999999999999999999842110 000011111111 11111 2345
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccch
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~ 422 (694)
.+.||||||+++|.......+..+|++|+|+|++... .|+ .....++..+.. -++| +|+|.||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 122 (187)
T cd04132 50 ELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT---SLD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKN 122 (187)
T ss_pred EEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCcc
Confidence 7899999999999887777889999999999998642 111 111112222221 2466 999999999864211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
........+...+....++ .+++++||++|.|+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 123 LDRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEE 157 (187)
T ss_pred ccCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHH
Confidence 0000011222333333332 2689999999999977
No 203
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.57 E-value=1.5e-14 Score=140.73 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEE--EEEEecCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFDSKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~--~~~~~~~~~ 344 (694)
++|+++|++++|||||+++|++..- ... ..+ ...+.. ...+.....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~-----------------------------~~~-t~~~~~~~~~~~~~~~~ 48 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEE-----------------------------YVP-TVFDHYAVSVTVGGKQY 48 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCC-----------------------------CCC-ceeeeeEEEEEECCEEE
Confidence 4799999999999999999984311 000 000 001111 112222345
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccch
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~ 422 (694)
.+.||||||+.+|.......+..+|++|+|+|..... .|.. .....+..++. .++| +|||+||+|+.+...
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s~~~---~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~ 121 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQN---VKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPK 121 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH---HHHH---HHHHHHHHHHhhCCCCC-EEEEeEchhhhcChh
Confidence 6789999999998877767788899999999998642 1111 11112223332 3566 899999999864221
Q ss_pred hhHhHH---------HHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i---------~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....+ .++...+.+.++. .+++.+||++|.|+.+
T Consensus 122 -~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~ 164 (174)
T cd04135 122 -TLARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKT 164 (174)
T ss_pred -hHHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHH
Confidence 11101 1122233333332 3689999999999976
No 204
>PLN03110 Rab GTPase; Provisional
Probab=99.57 E-value=5.6e-14 Score=142.78 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=95.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--cC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SK 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~--~~ 342 (694)
..++|+++|+.++|||||+++|++..... +..+.+..+.....+. ..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-------------------------------~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------------------------ESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCceeEEEEEEEEEECCE
Confidence 45899999999999999999998421100 1112222233333333 33
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~ 419 (694)
...+.||||||+++|.......+..+|++|+|+|.+... .| ......+..+.. .++| +|+|.||+|+..
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~ 131 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TF----DNVQRWLRELRDHADSNIV-IMMAGNKSDLNH 131 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH---HH----HHHHHHHHHHHHhCCCCCe-EEEEEEChhccc
Confidence 468899999999999888888889999999999998642 11 122223333333 2566 899999999864
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..... .+....+ .... .++++++||++|.|+.+
T Consensus 132 ~~~~~-~~~~~~l---~~~~-----~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 132 LRSVA-EEDGQAL---AEKE-----GLSFLETSALEATNVEK 164 (216)
T ss_pred ccCCC-HHHHHHH---HHHc-----CCEEEEEeCCCCCCHHH
Confidence 21111 1111111 1122 35789999999999977
No 205
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.57 E-value=6.6e-14 Score=139.46 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=97.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE--EEecC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFDSK 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~--~~~~~ 342 (694)
..++|+++|..++|||||+.+|... .. ..+....++.+.... .+...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~--~~-----------------------------~~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG--ST-----------------------------ESPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CC-----------------------------CCCCCCcceeEEEEEEEEECCE
Confidence 4589999999999999999999842 11 001111222222222 23334
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~ 420 (694)
...+.||||||+.+|...+...+..+|++|||+|.+... .|. .....+..+.. -++| +|||.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~---Sf~----~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~ 125 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRW---SFD----GIDRWIKEIDEHAPGVP-KILVGNRLHLAFK 125 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCC-EEEEEECccchhc
Confidence 477899999999999988888889999999999998642 222 22222333332 2456 8999999998642
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... .++...+.+..+ ++++.+||++|.|+.+
T Consensus 126 ~~v~----~~~~~~~a~~~~-----~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 126 RQVA----TEQAQAYAERNG-----MTFFEVSPLCNFNITE 157 (189)
T ss_pred cCCC----HHHHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 1111 222333333333 4789999999999977
No 206
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.56 E-value=3.5e-14 Score=135.47 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--cCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~--~~~~ 344 (694)
++|+++|++++|||||+++|++...... ..+.++.......+. ....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK-------------------------------HESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-------------------------------cCCccceeEEEEEEEECCEEE
Confidence 4799999999999999999995321100 001111222222222 2335
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-c--CCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F--GVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-l--gip~iIVVVNK~Dlv~~~ 421 (694)
.+.+|||||+..|.......+..+|++|+|+|++++.. + ......+..+.. . ++| +|+|+||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~ 121 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---F----QKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 78999999998888777777788999999999987521 1 112222222222 2 456 89999999987422
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+...+.+ ..+.+..+ .+++++||++|.|+.+
T Consensus 122 ~~~~~~~----~~~~~~~~-----~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 122 VVSKSEA----EEYAKSVG-----AKHFETSAKTGKGIEE 152 (162)
T ss_pred CCCHHHH----HHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 2111222 22222222 4679999999999976
No 207
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.56 E-value=3.1e-14 Score=138.15 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=92.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+++|++.... .. .+ ...+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~----------------------~~-----~t~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ES----------------------YD-----PTIEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cc----------------------cC-----CcchheE-EEEEEECCEEEEE
Confidence 57999999999999999999843210 00 00 0011010 1111222334678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
.+|||||+.+|...+...+..+|++|||+|..... .+........+........++| +|+|+||+|+........+
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~~~~ 127 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQVSRE 127 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCccCHH
Confidence 89999999999888888889999999999998642 1111111111111111223567 8999999998642111111
Q ss_pred HHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 427 ~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+...+.+.++ .++++++||++|.|+.+
T Consensus 128 ----~~~~~~~~~~----~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 128 ----DGVSLSQQWG----NVPFYETSARKRTNVDE 154 (168)
T ss_pred ----HHHHHHHHcC----CceEEEeeCCCCCCHHH
Confidence 1122222222 25789999999999976
No 208
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.56 E-value=3.1e-14 Score=138.16 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=93.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEE
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~l 348 (694)
|+++|..++|||||+++|+..... .. .....|.. ...+...+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~---------------------------~~pt~g~~----~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ES---------------------------VVPTTGFN----SVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--cc---------------------------ccccCCcc----eEEEeeCCeEEEE
Confidence 789999999999999999843110 00 00011211 2234567789999
Q ss_pred EeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHH-HHHH-cCCCcEEEEEecccccccchhhHh
Q 005478 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS-FGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 349 iDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~-lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
|||||+.+|...+..++..+|++|+|+|++... .+ ...++.+. ++.. -++| +++|+||+|+... ....
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~---s~----~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~--~~~~ 118 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE---RL----PLARQELHQLLQHPPDLP-LVVLANKQDLPAA--RSVQ 118 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HH----HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCC--CCHH
Confidence 999999999888888899999999999998642 01 12222222 2222 3566 9999999998642 2223
Q ss_pred HHHHh--hccchhcccccCCCceEEEeeccc------CCCccc
Q 005478 427 SIKVQ--LGTFLRSCGFKDASLTWIPLSALE------NQNLVT 461 (694)
Q Consensus 427 ~i~~~--l~~~l~~~g~~~~~v~~IpvSA~~------G~nI~e 461 (694)
++... +..+.++ ..+.++++||++ ++|+.+
T Consensus 119 ~i~~~~~~~~~~~~-----~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 119 EIHKELELEPIARG-----RRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHhCChhhcCC-----CceEEEEeeecCCCChhHHHHHHH
Confidence 33222 2222222 245788999888 888865
No 209
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.56 E-value=6.5e-14 Score=145.27 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCe-EEEEEEEEEecCCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI-TMTVAVAYFDSKNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~Gi-Ti~~~~~~~~~~~~~ 345 (694)
.+|+++|..|+|||||+++|++.. .... -.+.+ ........+....+.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~--f~~~-----------------------------y~pTi~d~~~k~~~i~~~~~~ 49 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR--FEEQ-----------------------------YTPTIEDFHRKLYSIRGEVYQ 49 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCC--CCCC-----------------------------CCCChhHhEEEEEEECCEEEE
Confidence 379999999999999999998421 1000 00000 011111222233467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---------cCCCcEEEEEeccc
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---------FGVDQLIVAVNKMD 416 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---------lgip~iIVVVNK~D 416 (694)
+.||||+|+.+|......++..+|++|||+|++... .|+.. ....+.+...+. .++| +|+|+||+|
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~D 124 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFEEV-CRLREQILETKSCLKNKTKENVKIP-MVICGNKAD 124 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHHHH-HHHHHHHHHhhcccccccccCCCCc-EEEEEECcc
Confidence 889999999998776666778899999999998642 12111 111111111111 2456 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+....+...+++ .+++... ..+.++++||++|.|+.+
T Consensus 125 l~~~~~v~~~ei----~~~~~~~----~~~~~~evSAktg~gI~e 161 (247)
T cd04143 125 RDFPREVQRDEV----EQLVGGD----ENCAYFEVSAKKNSNLDE 161 (247)
T ss_pred chhccccCHHHH----HHHHHhc----CCCEEEEEeCCCCCCHHH
Confidence 874222222222 2222111 135789999999999977
No 210
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=3.7e-14 Score=140.86 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=90.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|.+|+|||||+++|+... ..... ....|... .....+......+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~---------------------------~~t~~~~~-~~~~~~~~~~~~l~ 50 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETY---------------------------DPTIEDSY-RKQVVVDGQPCMLE 50 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccC---------------------------CCchHhhE-EEEEEECCEEEEEE
Confidence 48999999999999999998421 11000 00000000 01111222335688
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEecccccccc
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVVNK~Dlv~~~ 421 (694)
||||||+.+|......++..+|++|+|+|.+... .| ......+..+.. .++| +|+|.||+|+....
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~----~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~ 122 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRS---TF----ERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYER 122 (190)
T ss_pred EEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH---HH----HHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccC
Confidence 9999999999988888899999999999997642 11 111222222222 2456 89999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..... +...+...++ ++++++||++|.|+.+
T Consensus 123 ~v~~~----~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 123 EVSTE----EGAALARRLG-----CEFIEASAKTNVNVER 153 (190)
T ss_pred ccCHH----HHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 11111 1122222222 4689999999999977
No 211
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.56 E-value=2.8e-14 Score=161.25 Aligned_cols=144 Identities=21% Similarity=0.316 Sum_probs=104.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
..+||++|.||+|||||+|+|++....+ |+| +|+|++.....+...++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~V-----------------gNw--------------pGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKV-----------------GNW--------------PGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCcee-----------------cCC--------------CCeeEEEEEEEEEecCce
Confidence 4569999999999999999999754433 444 999999999999999999
Q ss_pred EEEEeCCCccchHHH------HHhhc--ccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005478 346 VVVLDSPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (694)
Q Consensus 346 v~liDtPGh~~f~~~------~i~~~--~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dl 417 (694)
+.++|+||.-.+... ....+ ..+|++|.|+||+.- . ........+.++|+| +|+++|++|.
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------e-RnLyltlQLlE~g~p-~ilaLNm~D~ 120 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------E-RNLYLTLQLLELGIP-MILALNMIDE 120 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------H-HHHHHHHHHHHcCCC-eEEEeccHhh
Confidence 999999994332111 11122 348999999999862 2 223334456789999 9999999998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+. .. +.-+..++-+.+| +|++|+||++|.|+++
T Consensus 121 A~~--~G---i~ID~~~L~~~LG-----vPVv~tvA~~g~G~~~ 154 (653)
T COG0370 121 AKK--RG---IRIDIEKLSKLLG-----VPVVPTVAKRGEGLEE 154 (653)
T ss_pred HHh--cC---CcccHHHHHHHhC-----CCEEEEEeecCCCHHH
Confidence 742 11 1222222333334 6899999999999876
No 212
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.55 E-value=3.4e-14 Score=137.81 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=89.4
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC-CeEEEEE
Q 005478 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (694)
Q Consensus 271 ivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-~~~v~li 349 (694)
|+|++|+|||||+++|++....+ ....++|++.....+... +..+.||
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-------------------------------ANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc-------------------------------cCCCceeecCcceEEEcCCCCeEEEE
Confidence 58999999999999999532111 111445555544555566 8899999
Q ss_pred eCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH----------HcCCCcEEEEE
Q 005478 350 DSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----------SFGVDQLIVAV 412 (694)
Q Consensus 350 DtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~----------~lgip~iIVVV 412 (694)
||||+.+ +...+...+..+|++++|+|+.....+ +..........+...+. ..+.| +++|+
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~ 127 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI-GGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVL 127 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc-cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEE
Confidence 9999743 233455667889999999999865100 00000011111221221 13566 89999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||+|+... ....... ....... ...+++++||++|.|+.+
T Consensus 128 NK~Dl~~~--~~~~~~~--~~~~~~~-----~~~~~~~~Sa~~~~gl~~ 167 (176)
T cd01881 128 NKIDLDDA--EELEEEL--VRELALE-----EGAEVVPISAKTEEGLDE 167 (176)
T ss_pred EchhcCch--hHHHHHH--HHHHhcC-----CCCCEEEEehhhhcCHHH
Confidence 99999742 2211111 1111111 234689999999999976
No 213
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.55 E-value=4.6e-14 Score=157.71 Aligned_cols=141 Identities=26% Similarity=0.256 Sum_probs=98.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|++|+|||||+++|++....+.. ..+|+|.+.....+..++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs------------------------------~~pgtTrd~~~~~i~~~g~ 251 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVS------------------------------DIKGTTRDVVEGDFELNGI 251 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccC------------------------------CCCCcEEEEEEEEEEECCE
Confidence 4678999999999999999999954322211 1278888888778888899
Q ss_pred EEEEEeCCCccchHH--------HHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 345 ~v~liDtPGh~~f~~--------~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
.+.||||||+.++.. ....++..+|++|+|+|++.+. ..... .+..+...+.| +|+|+||+|
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~--------s~~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPL--------TKDDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCC--------ChhHH-HHHHHhhCCCC-EEEEEECcc
Confidence 999999999865432 2345678899999999998753 11222 33334445777 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+... ..+ .+.+.++ .+++++||++ .|+.+
T Consensus 322 l~~~---~~~-------~~~~~~~-----~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 322 LKIN---SLE-------FFVSSKV-----LNSSNLSAKQ-LKIKA 350 (442)
T ss_pred CCCc---chh-------hhhhhcC-----CceEEEEEec-CCHHH
Confidence 8642 111 1111222 3578999998 57755
No 214
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.55 E-value=1.7e-14 Score=124.33 Aligned_cols=82 Identities=34% Similarity=0.577 Sum_probs=78.1
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~ 573 (694)
|||+|+++|+.+ .|++ +.|+|++|++++||++.++|++...+|++|+.++.++++|.|||.|+|.|++++..++.+|+
T Consensus 1 lr~~i~~~~~~~~~g~v-v~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~ 79 (83)
T cd03696 1 FRLPIDRVFTVKGQGTV-VTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGD 79 (83)
T ss_pred CEEEEEEEEEcCCcEEE-EEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCcc
Confidence 689999999988 8888 89999999999999999999999999999999999999999999999999999888999999
Q ss_pred eeec
Q 005478 574 VLCH 577 (694)
Q Consensus 574 VL~~ 577 (694)
+|+.
T Consensus 80 vl~~ 83 (83)
T cd03696 80 VLSS 83 (83)
T ss_pred EEcC
Confidence 9973
No 215
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.55 E-value=4.1e-14 Score=138.93 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEecCCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~-~~~~~~~~~~ 345 (694)
++|+++|..++|||||+.+|++.. ... +..+.+..... ...+......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~-----------------------------~~~pt~~~~~~~~~~~~~~~~~ 50 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS-----------------------------EYVPTVFDNYAVTVMIGGEPYT 50 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC-----------------------------CCCCceeeeeEEEEEECCEEEE
Confidence 689999999999999999998421 100 00011111111 1112223367
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchh
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e 423 (694)
+.||||||+++|...+...+..+|++|||+|.+... .|.. ....++..++. -++| +|+|.||+|+.+. .+
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~~~---~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~-~~ 122 (175)
T cd01874 51 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFEN---VKEKWVPEITHHCPKTP-FLLVGTQIDLRDD-PS 122 (175)
T ss_pred EEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHhCCCCC-EEEEEECHhhhhC-hh
Confidence 889999999999877777888999999999998642 1111 11112222322 2456 9999999998642 11
Q ss_pred hHhHHH---------HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~---------~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+.+. ++...+.+..+ .+.++++||++|.|+.+
T Consensus 123 ~~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~ 165 (175)
T cd01874 123 TIEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKN 165 (175)
T ss_pred hHHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHH
Confidence 111110 11111222222 35789999999999977
No 216
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.55 E-value=6.3e-14 Score=133.42 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=92.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--CCeE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNYH 345 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~--~~~~ 345 (694)
+|+|+|++++|||||+++|+... ..... ...+.+.....+.. ....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEY------------------------------DPTIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCc------------------------------CCChhHeEEEEEEECCEEEE
Confidence 58999999999999999998532 11000 00011111112222 2467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHHHc---CCCcEEEEEecccccccc
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSF---GVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~l---gip~iIVVVNK~Dlv~~~ 421 (694)
+.+||+||+.++.......+..+|++|+|+|...... + ......+ .+.... +.| +++|+||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---F----EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc
Confidence 8999999999988888888889999999999876421 0 1222222 222222 455 99999999987521
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... +++..+.+..+ .+++++||++|.|+.+
T Consensus 121 ~~~~----~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 121 QVSK----EEGKALAKEWG-----CPFIETSAKDNINIDE 151 (160)
T ss_pred eecH----HHHHHHHHHcC-----CcEEEeccCCCCCHHH
Confidence 1111 22333333333 4789999999999976
No 217
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.54 E-value=6.3e-14 Score=137.12 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=92.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.++|+++|..|+|||||+.+++... ..... ....|... .....+......
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~--f~~~~---------------------------~~t~~~~~-~~~~~~~~~~~~ 51 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHS--FPDYH---------------------------DPTIEDAY-KQQARIDNEPAL 51 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCCCc---------------------------CCcccceE-EEEEEECCEEEE
Confidence 3689999999999999999998421 10000 00001000 011122233467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~~ 421 (694)
+.||||||..+|...+..++..+|++|+|+|.+... .| ....+....+.. -++| +|+|.||+|+....
T Consensus 52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~---Sf----~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~ 123 (172)
T cd04141 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH---SF----QEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQR 123 (172)
T ss_pred EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh---HH----HHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcC
Confidence 889999999999888888889999999999998642 11 112222222322 2466 99999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.-.. ++...+.+..+ ++++++||++|.|+.+
T Consensus 124 ~v~~----~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 124 QVTT----EEGRNLAREFN-----CPFFETSAALRHYIDD 154 (172)
T ss_pred ccCH----HHHHHHHHHhC-----CEEEEEecCCCCCHHH
Confidence 1111 11222233333 5789999999999977
No 218
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.54 E-value=1.3e-13 Score=136.35 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|..++|||||+.+|+... .... .....|.........+......+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~--f~~~---------------------------~~~T~g~~~~~~~i~~~~~~~~l 51 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE--FDED---------------------------YIQTLGVNFMEKTISIRGTEITF 51 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCC---------------------------CCCccceEEEEEEEEECCEEEEE
Confidence 479999999999999999998421 0000 00112222211122222234678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccc-hh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS-KD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~-~e 423 (694)
.||||+|++.|...+...+..+|++|+|+|++... .| ....+.+..++.. ... .|+|.||+|+.... ..
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~---s~----~~i~~~~~~~~~~~~~~~-pilVgnK~Dl~~~~~~~ 123 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS---TL----NSIKEWYRQARGFNKTAI-PILVGTKYDLFADLPPE 123 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhCCCCC-EEEEEEchhccccccch
Confidence 99999999999887777889999999999998642 11 1222333333332 223 36789999986311 11
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+.+.++...+.+.++ .+++++||++|.|+.+
T Consensus 124 ~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 124 EQEEITKQARKYAKAMK-----APLIFCSTSHSINVQK 156 (182)
T ss_pred hhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11112233333333333 4789999999999977
No 219
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.54 E-value=5.7e-14 Score=143.20 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+|+|.+++|||||+++|+...- . . .-.|+...+....+....+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f--~-------------------------~-------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF--K-------------------------D-------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC--C-------------------------C-------CCCccceEEEEEEeeEEEE
Confidence 4799999999999999999984210 0 0 0012221222223356789
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccc
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~ 419 (694)
.||||||++.|.......+..+|++|+|+|++... .|. ....+...+... .++| +|+|.||+|+.+
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~---Sf~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~ 114 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ---SLE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTE 114 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 99999999999888888889999999999998642 111 111111122221 2355 899999999874
No 220
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.53 E-value=5.9e-14 Score=137.50 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE--ecCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~--~~~~~ 344 (694)
.+|+++|++|+|||||+++|+...... .. ...+.......+ ....+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--SY------------------------------YPTIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc--cc------------------------------CcchhhhEEEEEEECCEEE
Confidence 579999999999999999999432100 00 000000001112 22345
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+.+|.......+..+|++|+|+|+.... .++ ........++.. .+.| +|+|+||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK---SFE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 6889999999998877777888999999999998642 111 111111223332 3456 89999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....+ ++..+...++ .+++++||++|.|+.+
T Consensus 123 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 123 QVSTE----EGKELAESWG-----AAFLESSARENENVEE 153 (180)
T ss_pred ccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 11111 1222222222 4689999999999976
No 221
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=1.3e-13 Score=136.42 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=93.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|..++|||||+++|+...-. . ......|.+.......+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS--E---------------------------STKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC--C---------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 47999999999999999999832110 0 001112222222223333344678
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~~e 423 (694)
.||||||+.+|...+...+..+|++|+|+|++... .| .....++..+..+ .+| +|+|+||+|+.+....
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~----~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v 123 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE---SF----ENLKFWINEINRYARENVI-KVIVANKSDLVNNKVV 123 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccC
Confidence 89999999999888888899999999999998642 11 1112223333322 344 8999999998742111
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ .. ..+....+ ++++++||++|.|+.+
T Consensus 124 ~~~-~~---~~~~~~~~-----~~~~evSa~~~~~i~~ 152 (188)
T cd04125 124 DSN-IA---KSFCDSLN-----IPFFETSAKQSINVEE 152 (188)
T ss_pred CHH-HH---HHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111 11 11222222 4689999999999976
No 222
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.53 E-value=7.1e-14 Score=135.87 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=90.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEE-EEEEEEecCCeEEE
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSKNYHVV 347 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~-~~~~~~~~~~~~v~ 347 (694)
|+|+|..++|||||+++|++..- ... ..+.+... .....+......+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PED-----------------------------YVPTVFENYSADVEVDGKPVELG 49 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CCC-----------------------------CCCcEEeeeeEEEEECCEEEEEE
Confidence 58999999999999999984211 000 00101000 11112222345689
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchhhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRF 425 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e~~ 425 (694)
||||||+++|.......+..+|++|+|+|++... .|+ ......+..+.. -++| +|+|.||+|+... ....
T Consensus 50 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~-~~~~ 121 (174)
T smart00174 50 LWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---SFE---NVKEKWYPEVKHFCPNTP-IILVGTKLDLRED-KSTL 121 (174)
T ss_pred EEECCCCcccchhchhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEecChhhhhC-hhhh
Confidence 9999999998877777788999999999998631 111 111112222222 2566 9999999998741 1111
Q ss_pred hHH---------HHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 426 DSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 426 ~~i---------~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+.+ .++...+.+.+++ .+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 122 RELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVRE 162 (174)
T ss_pred hhhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHH
Confidence 111 1222233333332 3789999999999977
No 223
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.53 E-value=7.4e-14 Score=131.06 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=93.6
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC-CeEEEEE
Q 005478 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (694)
Q Consensus 271 ivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-~~~v~li 349 (694)
++|++|+|||||+++|++..... .....+.|.......+... ...+.||
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999998532211 1112344544444444433 6789999
Q ss_pred eCCCccchH-------HHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 350 DSPGHKDFV-------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 350 DtPGh~~f~-------~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
||||+.++. ..+...+..+|++++|+|+..... .............+.| +++|+||+|+....
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~--------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD--------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC--------HHHHHHHHHHHhcCCe-EEEEEEccccCChh-
Confidence 999977654 334456788999999999998641 2222235555567777 89999999998532
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
......... ... .......+++++||.++.|+.+
T Consensus 121 -~~~~~~~~~-~~~---~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 121 -EEEELLELR-LLI---LLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred -hHHHHHHHH-Hhh---cccccCCceEEEeeeccCCHHH
Confidence 211111100 011 1111356889999999999965
No 224
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=6e-14 Score=136.80 Aligned_cols=154 Identities=15% Similarity=0.041 Sum_probs=92.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.+.++|+++|..|+|||||+++|+...-.+ .. .....|.........+....
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~-~~---------------------------~~~T~~~~~~~~~~~~~~~~ 53 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL-NA---------------------------YSPTIKPRYAVNTVEVYGQE 53 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCc-cc---------------------------CCCccCcceEEEEEEECCeE
Confidence 357899999999999999999998421100 00 00001111111122223333
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEecccccccch
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVVNK~Dlv~~~~ 422 (694)
..+.+||++|...|......++..+|++|+|+|++... .+ ....+.+..+.. .++| +|+|+||+|+.+...
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~----~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~ 125 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK---SF----SYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQ 125 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH---HH----HHHHHHHHHhccCCCCe-EEEEEEccccccccc
Confidence 67889999999988777777788999999999997631 00 011122222211 2566 999999999864211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. ..+...+.+.+++. .++++||++|.|+.+
T Consensus 126 ~~----~~~~~~~~~~~~~~----~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 126 RY----EVQPDEFCRKLGLP----PPLHFSSKLGDSSNE 156 (169)
T ss_pred cc----ccCHHHHHHHcCCC----CCEEEEeccCccHHH
Confidence 10 11112222333431 348999999999976
No 225
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=9.1e-14 Score=140.78 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=93.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec---C
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---K 342 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~---~ 342 (694)
.++|+|+|..|+|||||+++|++..... ...+.++.+.....+.. .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~-------------------------------~~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE-------------------------------VSDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-------------------------------CCCceeceEEEEEEEEECCCC
Confidence 3789999999999999999998421100 00012222322222322 2
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHH-HHHHcC--CCcEEEEEecccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFG--VDQLIVAVNKMDAVQ 419 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~lg--ip~iIVVVNK~Dlv~ 419 (694)
...+.||||||++.|.......+..+|++|+|+|.+... .|. ...+.+. +...+. .+++|||.||+|+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---Sf~----~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE---SFE----HVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 467899999999999888888889999999999998642 111 1122222 222222 233788999999874
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...... ++...+.+.++ ++++++||++|.|+.+
T Consensus 124 ~~~v~~----~~~~~~~~~~~-----~~~~e~Sak~g~~v~e 156 (211)
T cd04111 124 QRQVTR----EEAEKLAKDLG-----MKYIETSARTGDNVEE 156 (211)
T ss_pred ccccCH----HHHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 211111 11222333333 5789999999999977
No 226
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.53 E-value=3.9e-14 Score=121.52 Aligned_cols=80 Identities=30% Similarity=0.479 Sum_probs=74.4
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEeccccccccccCc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~ 573 (694)
|||+|.++|+.. .|+. ++|+|++|.|++||+|+++|.+..++|++|+.++.++++|.|||+|+|.|+ +..++++|+
T Consensus 1 lr~~V~dv~k~~~~~~~-v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~ 77 (81)
T cd03695 1 FRFPVQYVIRPNADFRG-YAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGD 77 (81)
T ss_pred CEeeEEEEEeeCCCcEE-EEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCC
Confidence 689999999976 6677 899999999999999999999999999999999999999999999999998 467899999
Q ss_pred eeec
Q 005478 574 VLCH 577 (694)
Q Consensus 574 VL~~ 577 (694)
|||.
T Consensus 78 vl~~ 81 (81)
T cd03695 78 VIVA 81 (81)
T ss_pred EEeC
Confidence 9984
No 227
>PLN03108 Rab family protein; Provisional
Probab=99.53 E-value=1.6e-13 Score=138.76 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=94.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.++|+|+|++++|||||+++|+....... .....|.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-----------------------------~~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCccceEEEEEEEECCEEEE
Confidence 47899999999999999999984311100 0011222222222333333456
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccch
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~~~ 422 (694)
+.||||||+..|...+...+..+|++|+|+|+.... .+ ......+..+.. -.+| +|+|+||+|+.....
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~---s~----~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF----NHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 128 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH---HH----HHHHHHHHHHHHhcCCCCc-EEEEEECccCccccC
Confidence 889999999999888888888999999999998642 11 111122222222 2455 899999999864211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... ++...+++..+ ++++++||++|.|+.+
T Consensus 129 ~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 129 VST----EEGEQFAKEHG-----LIFMEASAKTAQNVEE 158 (210)
T ss_pred CCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111 12223333333 4789999999999977
No 228
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.53 E-value=1.1e-13 Score=135.80 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=92.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeE-EEEEEEEEecCCe
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT-MTVAVAYFDSKNY 344 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiT-i~~~~~~~~~~~~ 344 (694)
+++|+++|..++|||||+.+++.. ..... ..+.+. .......++....
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~--~f~~~-----------------------------~~~t~~~~~~~~~~~~~~~~ 49 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTN--AFPGE-----------------------------YIPTVFDNYSANVMVDGKPV 49 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcC--CCCCc-----------------------------CCCcceeeeEEEEEECCEEE
Confidence 368999999999999999999842 11000 000000 0001112233446
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccch
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~ 422 (694)
.+.||||||+.+|...+...+..+|++|||+|.+... .|. .....++..+... ++| +|||.||+|+.+. .
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---sf~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~-~ 121 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD-K 121 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccC-h
Confidence 7889999999999887777888999999999998642 111 1111222222222 456 9999999998641 1
Q ss_pred hhHhHHH---------HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~---------~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+.+. ++...+.+.++ .++|+++||++|+|+.+
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGLKT 165 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCHHH
Confidence 1111111 11122222222 24789999999999976
No 229
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.52 E-value=1.6e-13 Score=136.69 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=93.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEE---EEEEec
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA---VAYFDS 341 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~---~~~~~~ 341 (694)
..++|+++|..++|||||+.+++.. .... +..+ |+... ...++.
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~--~f~~-----------------------------~~~~--t~~~~~~~~~~~~~ 48 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTN--AFPK-----------------------------EYIP--TVFDNYSAQTAVDG 48 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhC--CCCc-----------------------------CCCC--ceEeeeEEEEEECC
Confidence 4589999999999999999999842 1100 0001 11111 112233
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~ 419 (694)
....+.||||||+++|......++..+|++|+|+|.+... .|+.+ ....+..+.. -++| +|+|.||.|+.+
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~~~---~~~w~~~i~~~~~~~p-iilvgNK~DL~~ 121 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYENV---RHKWHPEVCHHCPNVP-ILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHHHH---HHHHHHHHHhhCCCCC-EEEEEeChhhhc
Confidence 4467889999999999987777889999999999998642 12111 0111111221 2566 999999999864
Q ss_pred cchhhHhHHH---------HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~---------~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... ..+.+. ++...+.+.++ .++++++||++|+|+.+
T Consensus 122 ~~~-~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e 167 (191)
T cd01875 122 DAD-TLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKE 167 (191)
T ss_pred Chh-hHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHH
Confidence 211 111111 11122222222 25789999999999977
No 230
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.52 E-value=8.3e-14 Score=135.89 Aligned_cols=152 Identities=17% Similarity=0.156 Sum_probs=91.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEE--EEEEEecCCe
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV--AVAYFDSKNY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~--~~~~~~~~~~ 344 (694)
++|+++|..++|||||+.+++... .... . ..++.+. ....++....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~-----------------------------~-~~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTE-----------------------------Y-VPTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCC-----------------------------C-CCceeeeeeEEEEECCEEE
Confidence 479999999999999999997421 1000 0 1111111 1122233346
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccch
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~ 422 (694)
.+.||||||+.+|.......+..+|++|+|+|+.... .| .......+..+.. -++| +|+|.||+|+.....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~---sf---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 121 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS---SF---QNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVN 121 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHH---HH---HHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChh
Confidence 7889999999998877777788999999999998642 11 1111122222322 2456 899999999864211
Q ss_pred h--------hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 D--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e--------~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ...-..++...+.+..+ ..+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~Sa~~~~~v~~ 164 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIG----ACEYIECSALTQKNLKE 164 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhC----CCeEEEEeCCCCCCHHH
Confidence 0 00000112222333222 13789999999999976
No 231
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.52 E-value=3.1e-13 Score=130.51 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=92.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--Ce
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 344 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~--~~ 344 (694)
++|+++|..++|||||+.+++.. .+. .+..+.+..+.....+... ..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDN--EFH-----------------------------SSHISTIGVDFKMKTIEVDGIKV 49 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 37999999999999999999832 110 0011222223322333333 35
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~Dlv~~~ 421 (694)
.+.||||||+.+|...+...+..+|++++|+|.+... .|. .....+..+... ++| +++|.||+|+.+..
T Consensus 50 ~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---sf~----~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~ 121 (161)
T cd04117 50 RIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSER---SYQ----HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKR 121 (161)
T ss_pred EEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 7889999999999888888889999999999988631 121 111222222222 345 89999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... . ++...+.+.++ .+++++||++|.|+.+
T Consensus 122 ~v~-~---~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 122 QVG-D---EQGNKLAKEYG-----MDFFETSACTNSNIKE 152 (161)
T ss_pred CCC-H---HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111 1 11122222222 4689999999999976
No 232
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.51 E-value=2.3e-13 Score=138.66 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=95.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++|+++|..|+|||||+++++... ... ......|+++...........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~--f~~---------------------------~~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC--CCC---------------------------ccCCccceeEEEEEEEECCeE
Confidence 567899999999999999999987421 000 001112333322222223345
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~ 421 (694)
..+.||||||+++|...+..++..+|++|+|+|.+... .+. .....+..+.. -++| +|+|.||+|+...
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~---s~~----~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~- 132 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK----NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR- 132 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH---HHH----HHHHHHHHHHHhCCCCc-EEEEEEchhhhhc-
Confidence 78999999999999877777789999999999998742 111 11222222221 2456 9999999998631
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....+ ++ .+.+. ..++++++||++|.|+.+
T Consensus 133 ~v~~~----~~-~~~~~-----~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 133 QVKAK----QV-TFHRK-----KNLQYYEISAKSNYNFEK 162 (219)
T ss_pred cCCHH----HH-HHHHh-----cCCEEEEcCCCCCCCHHH
Confidence 11111 11 22222 235789999999999977
No 233
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2.2e-13 Score=131.19 Aligned_cols=159 Identities=21% Similarity=0.241 Sum_probs=113.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+...+|+|+|+.++||||++++|......+...... ..+ ....+.+|+...+..+...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----------~~s-----------~k~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----------SVS-----------GKGKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeecccc----------ccc-----------cccccceeEeecccceEEc
Confidence 3456789999999999999999999665433211100 000 0002346776666666665
Q ss_pred C-eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC-CCcEEEEEeccccccc
Q 005478 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQY 420 (694)
Q Consensus 343 ~-~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVVVNK~Dlv~~ 420 (694)
+ ..+.|+|||||++|-.++.-.++.++++|++||++.+. ....++.+.++.... +| ++|++||.|+.+.
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~--------~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPI--------TFHAEEIIDFLTSRNPIP-VVVAINKQDLFDA 136 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCc--------chHHHHHHHHHhhccCCC-EEEEeeccccCCC
Confidence 5 88999999999999999998999999999999999863 124466777777777 66 9999999999862
Q ss_pred -chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 -SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 -~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+.+. +++.+..-+ ..+++|+++|..+++..+
T Consensus 137 ~ppe~---i~e~l~~~~-------~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 137 LPPEK---IREALKLEL-------LSVPVIEIDATEGEGARD 168 (187)
T ss_pred CCHHH---HHHHHHhcc-------CCCceeeeecccchhHHH
Confidence 3333 332222221 257889999999999865
No 234
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.51 E-value=2e-13 Score=134.26 Aligned_cols=151 Identities=23% Similarity=0.255 Sum_probs=102.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.+..+|+++|..|||||||+++|... .+. .... |.......+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~--~~~----------------------------~~~p----T~g~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG--EIS----------------------------ETIP----TIGFNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS--SEE----------------------------EEEE----ESSEEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc--ccc----------------------------ccCc----ccccccceeeeCc
Confidence 46789999999999999999999731 110 0111 2223344566689
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~ 419 (694)
..+.|+|.+|+..+...+..++..+|++|+|||++... . ....++.+..+.. .++| ++|++||+|+.+
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~---~----l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~ 129 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE---R----LQEAKEELKELLNDPELKDIP-ILILANKQDLPD 129 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG---G----HHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTT
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEecccce---e----ecccccchhhhcchhhcccce-EEEEeccccccC
Confidence 99999999999998888888899999999999998642 1 1233443332222 2455 999999999875
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ...+++...+. +..+. ....+.++++||.+|+|+.+
T Consensus 130 ~--~~~~~i~~~l~--l~~l~-~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 130 A--MSEEEIKEYLG--LEKLK-NKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp S--STHHHHHHHTT--GGGTT-SSSCEEEEEEBTTTTBTHHH
T ss_pred c--chhhHHHhhhh--hhhcc-cCCceEEEeeeccCCcCHHH
Confidence 2 22233333222 11121 23567889999999999977
No 235
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.51 E-value=2.6e-13 Score=129.55 Aligned_cols=147 Identities=18% Similarity=0.254 Sum_probs=94.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEE
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~l 348 (694)
|+++|++|+|||||++.|++..... ......+.|....... ... .+.|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~--~~~-~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGKTQLINFFN--VND-KFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-----------------------------eecCCCCcceeEEEEE--ccC-eEEE
Confidence 8999999999999999998421110 0111234444443332 222 8999
Q ss_pred EeCCCccch----------HHHH---HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 349 LDSPGHKDF----------VPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 349 iDtPGh~~f----------~~~~---i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
+||||+... ...+ +......+++++|+|+.... .....+.+.++...+.| +++|+||+
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~~~~~-vi~v~nK~ 120 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEELGIP-FLVVLTKA 120 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHHcCCC-EEEEEEch
Confidence 999996442 2222 23334568899999998652 23455667778888888 89999999
Q ss_pred cccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 416 Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+.. ..........+...++... ...+++++||+++.|+.+
T Consensus 121 D~~~--~~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 121 DKLK--KSELAKALKEIKKELKLFE---IDPPIILFSSLKGQGIDE 161 (170)
T ss_pred hcCC--hHHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCHHH
Confidence 9864 2333333444444443211 235789999999999976
No 236
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.51 E-value=4.9e-13 Score=136.84 Aligned_cols=166 Identities=20% Similarity=0.223 Sum_probs=111.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
..+...|+++|++|+|||||++.|+...... ......|. +.+ +...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~i----~~~~ 81 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-ITV----VTGK 81 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EEE----EecC
Confidence 4566789999999999999999998532110 00011331 111 2236
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
+.+++|+||||+. ..++..+..+|++++|+|+..+. ..++.+.+..+...|+|.+|+|+||+|+++. .
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~--------~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~ 149 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGF--------EMETFEFLNILQVHGFPRVMGVLTHLDLFKK-N 149 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCC--------CHHHHHHHHHHHHcCCCeEEEEEeccccCCc-H
Confidence 7889999999964 56677788899999999998764 3577778888888899866679999999852 3
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhccCC
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP 486 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~l~~ 486 (694)
..++.+.+++...+...-+ ...+++++||++.-.+. |-.+..|+..|+.+.+
T Consensus 150 ~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~~----------~~e~~~~~r~i~~~~~ 201 (225)
T cd01882 150 KTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRYP----------KTEIHNLARFISVMKF 201 (225)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCCC----------HHHHHHHHHHHHhCCC
Confidence 4455666666653321112 23578999999875542 2223346666655543
No 237
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.50 E-value=1.4e-13 Score=132.94 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=86.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|++++|||||+.+|+... ..... ... .+ +.......++.....+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~----------------------~~t-----~~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEY----------------------DPN-----LE-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--ccccc----------------------CCC-----hH-HhceEEEEECCEEEEEE
Confidence 48999999999999999998421 10000 000 00 01111122233345688
Q ss_pred EEeCCCccch-HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEEecccccccc
Q 005478 348 VLDSPGHKDF-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 348 liDtPGh~~f-~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVVNK~Dlv~~~ 421 (694)
||||||+..+ ...+...+..+|++|+|+|++... .| ......+..+.. .++| +|+|+||+|+....
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS---SF----DEISQLKQLIREIKKRDREIP-VILVGNKADLLHYR 122 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHH---HH----HHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhC
Confidence 9999999853 445566788899999999998742 11 111222222332 2566 89999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCC-Cccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~-nI~e 461 (694)
.... ++...+.+..+ .+++++||++|. |+.+
T Consensus 123 ~v~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 123 QVST----EEGEKLASELG-----CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEeCCCCCchhHHH
Confidence 1111 11122222222 468999999995 8876
No 238
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.49 E-value=2.1e-13 Score=135.50 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=90.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEE-EEEEEEecCCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSKNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~-~~~~~~~~~~~~ 345 (694)
.+|+++|..++|||||+++|++..- .. +..+.+... .....++.....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~i~~~~~~~~ 49 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF--PQ-----------------------------VYEPTVFENYVHDIFVDGLHIE 49 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CC-----------------------------ccCCcceeeeEEEEEECCEEEE
Confidence 3799999999999999999984211 00 000101001 111122233467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchh
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e 423 (694)
+.||||||+++|......++..+|++|||+|.+... .|. ......+..+.. .++| +|+|.||+|+......
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~---sf~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~ 122 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD---SLE---NVESKWLGEIREHCPGVK-LVLVALKCDLREARNE 122 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhh
Confidence 899999999998776666778899999999988642 111 111112223332 2556 9999999999752211
Q ss_pred hH--hH------HHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RF--DS------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~--~~------i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.- .. ..++...+.+..+ .++++++||++|.|+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e 164 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNE 164 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHH
Confidence 10 00 0111112222222 25789999999999977
No 239
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.49 E-value=7.4e-13 Score=136.16 Aligned_cols=120 Identities=21% Similarity=0.310 Sum_probs=85.4
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
.+..+.++||++|.||+|||||.|.|++......++. ..+|.......+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K------------------------------~~TTr~~ilgi~t 116 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRK------------------------------VHTTRHRILGIIT 116 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcccccccc------------------------------ccceeeeeeEEEe
Confidence 4556789999999999999999999998766555443 3356677777778
Q ss_pred cCCeEEEEEeCCCc------cc------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCc
Q 005478 341 SKNYHVVVLDSPGH------KD------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQ 407 (694)
Q Consensus 341 ~~~~~v~liDtPGh------~~------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~ 407 (694)
....++.|+||||. +. +..+...++..||++++|+||+..- .. +.++ .+..+.. ..+|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr--~~---l~p~---vl~~l~~ys~ip- 187 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR--TP---LHPR---VLHMLEEYSKIP- 187 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc--Cc---cChH---HHHHHHHHhcCC-
Confidence 88999999999992 22 2334456777899999999998521 00 1122 2223333 3566
Q ss_pred EEEEEecccccc
Q 005478 408 LIVAVNKMDAVQ 419 (694)
Q Consensus 408 iIVVVNK~Dlv~ 419 (694)
-|+|+||+|...
T Consensus 188 s~lvmnkid~~k 199 (379)
T KOG1423|consen 188 SILVMNKIDKLK 199 (379)
T ss_pred ceeeccchhcch
Confidence 689999999874
No 240
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.5e-13 Score=129.73 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.+..+|+++|..++|||+||.++.+..-.-+ -...-|+.......+++...
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~-----------------------------YqATIGiDFlskt~~l~d~~ 70 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNT-----------------------------YQATIGIDFLSKTMYLEDRT 70 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccc-----------------------------ccceeeeEEEEEEEEEcCcE
Confidence 4458899999999999999999996421100 00113343334444556667
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHHHcCC--CcEEEEEeccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGV--DQLIVAVNKMDAVQY 420 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~lgi--p~iIVVVNK~Dlv~~ 420 (694)
.++.||||+|+++|....-++++.+.++|+|+|.+..- .+ .++...+ .+.+.-|- .-+++|.||.||++.
T Consensus 71 vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~------Sf-e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 71 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRN------SF-ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred EEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccc------hH-HHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 88999999999999999999999999999999987531 11 2444444 33444443 236788999999953
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.++.. ++-....++++ +.|+.+||+.|.|+..
T Consensus 144 --rqvs~--eEg~~kAkel~-----a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 144 --RQVSI--EEGERKAKELN-----AEFIETSAKAGENVKQ 175 (221)
T ss_pred --hhhhH--HHHHHHHHHhC-----cEEEEecccCCCCHHH
Confidence 22211 11112222333 4789999999999975
No 241
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.49 E-value=2.6e-13 Score=132.00 Aligned_cols=153 Identities=15% Similarity=0.124 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.+|+|+|+.++|||||+++|++.... ... ....+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~---------------------------~~t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVY---------------------------VPTVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCC---------------------------CCccccce-EEEEEECCEEEEE
Confidence 47999999999999999999842110 000 00001011 1112233344578
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchhh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.||||||+++|.......+..+|++++|+|++... .+.. .....+..++. -++| +|+|+||+|+.... ..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s~~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~ 123 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLEN---IPEKWTPEVKHFCPNVP-IILVGNKKDLRNDE-HT 123 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---HHHH---HHHHHHHHHHhhCCCCC-EEEEeeChhcccCh-hh
Confidence 99999999998776666778999999999988531 1111 10111222222 2566 99999999986421 11
Q ss_pred HhHHH---------HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~---------~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+.+. .+...+.+.++ ..+++++||++|.|+.+
T Consensus 124 ~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 124 RRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVRE 165 (175)
T ss_pred hhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHH
Confidence 11110 11122222222 24789999999999976
No 242
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.49 E-value=1.8e-13 Score=158.17 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=95.2
Q ss_pred eCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEEEeCC
Q 005478 273 GHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSP 352 (694)
Q Consensus 273 G~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~liDtP 352 (694)
|.+|+|||||+|+|++....+ ...+|+|++.....++.++..+.+||||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v-------------------------------~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTV-------------------------------GNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCee-------------------------------cCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 899999999999998532111 1137899998888888888899999999
Q ss_pred CccchHHH-----HHh---hcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 353 GHKDFVPN-----MIS---GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 353 Gh~~f~~~-----~i~---~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
|+.+|... +.+ ....+|++++|+|++... ...+....+...++| +|+|+||+|+.+...
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le----------r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~-- 116 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE----------RNLYLTLQLLELGIP-MILALNLVDEAEKKG-- 116 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch----------hhHHHHHHHHhcCCC-EEEEEehhHHHHhCC--
Confidence 98876432 111 224689999999998631 223333445567888 899999999864211
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. .+...+.+.++ ++++++||++|+|+.+
T Consensus 117 i~---~d~~~L~~~lg-----~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 117 IR---IDEEKLEERLG-----VPVVPTSATEGRGIER 145 (591)
T ss_pred Ch---hhHHHHHHHcC-----CCEEEEECCCCCCHHH
Confidence 11 11222222333 4789999999999977
No 243
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.48 E-value=1.5e-13 Score=135.44 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=93.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|..++|||+|+.+++... .... ....-|.+.. ....++.....+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~--f~~~---------------------------~~~Ti~~~~~-~~~~~~~~~v~l 51 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK--FPTD---------------------------YIPTVFDNFS-ANVSVDGNTVNL 51 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC--CCCC---------------------------CCCcceeeeE-EEEEECCEEEEE
Confidence 689999999999999999998421 1000 0000111111 111223344778
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchh-
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD- 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e- 423 (694)
.||||+|+++|...+..+++.+|++|||+|.+... .|.. ....++..++. -++| +|+|.||+|+.+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~---Sf~~---~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~ 124 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRA---SYEN---VLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYL 124 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCHH---HHHH---HHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhh
Confidence 99999999999888878899999999999998642 1211 11122233332 2456 9999999999642100
Q ss_pred -----hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 -----RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 -----~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...-..++...+.+..+. .+|+.+||++|.|+.+
T Consensus 125 ~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 125 ADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKA 163 (176)
T ss_pred hhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHH
Confidence 000112223333333332 2589999999999977
No 244
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.48 E-value=2.6e-13 Score=117.93 Aligned_cols=85 Identities=33% Similarity=0.453 Sum_probs=76.1
Q ss_pred eeeEEEEEEEEecCCCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEe-CceEEeec
Q 005478 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVAL-QEPVCVEE 662 (694)
Q Consensus 584 ~~~~f~a~v~vl~~~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l-~~pi~~e~ 662 (694)
.++.|+|++.||+++.||.+||++.+|+|+..++|+|.+|.. ++|++|+.+.|+|.| .+|+|+++
T Consensus 2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~e~ 67 (87)
T cd03708 2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYLRE 67 (87)
T ss_pred ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEEcc
Confidence 367899999999999999999999999999999999987742 579999999999994 89998876
Q ss_pred ccccCCcceEEEEeCCcEEEEEEEEee
Q 005478 663 FSNCRALGRAFLRSSGRTIAVGIVTRI 689 (694)
Q Consensus 663 ~~~~~~lgrfiLr~~g~Tvg~G~V~~v 689 (694)
+|||+|| +|+|||+|+|+++
T Consensus 68 ------~grf~lr-~g~tva~G~I~~~ 87 (87)
T cd03708 68 ------GQRLIFR-EGRTKGVGEVTKV 87 (87)
T ss_pred ------CCeEEEE-CCCcEEEEEEEEC
Confidence 6899997 5599999999875
No 245
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=141.72 Aligned_cols=156 Identities=18% Similarity=0.258 Sum_probs=96.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+....|++||.||||||||+++|+.....|....+ +|+........+++
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaF-------------------------------TTL~P~iG~v~ydd 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF-------------------------------TTLRPHIGTVNYDD 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccce-------------------------------eeeccccceeeccc
Confidence 45567999999999999999999987776643322 23333322333333
Q ss_pred e-EEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 344 Y-HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 344 ~-~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
. .+++-|.||..+ .-...++.+..|+.+++|||.+.+-....++.+.....|.-.+-+.+.-++.+||+|||
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 3 399999999443 45566778889999999999987621111111111111111112223444589999999
Q ss_pred cccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 416 Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+.+..+. ..+++...|. +..++|+||++++|+.+
T Consensus 323 D~~eae~~----~l~~L~~~lq-------~~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 323 DLPEAEKN----LLSSLAKRLQ-------NPHVVPVSAKSGEGLEE 357 (366)
T ss_pred CchhHHHH----HHHHHHHHcC-------CCcEEEeeeccccchHH
Confidence 98632122 2233333331 23579999999999976
No 246
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.47 E-value=5.8e-13 Score=137.03 Aligned_cols=82 Identities=27% Similarity=0.323 Sum_probs=60.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|.+|+|||||+++|++....+. ...+.|.+.....+...+..++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~-------------------------------~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA-------------------------------AYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-------------------------------CCCCccccceEEEEEECCeEEE
Confidence 689999999999999999995422110 0134455554555566788999
Q ss_pred EEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCC
Q 005478 348 VLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (694)
Q Consensus 348 liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g 380 (694)
+|||||+.+ +...++..+..+|++++|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999753 334567788899999999998764
No 247
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.47 E-value=6.9e-13 Score=131.34 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=94.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|..++|||||+.+++... ..... ...-+.... ....++....
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~--f~~~~---------------------------~pT~~~~~~-~~~~~~~~~~ 53 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC--FPENY---------------------------VPTVFENYT-ASFEIDTQRI 53 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCcc---------------------------CCceeeeeE-EEEEECCEEE
Confidence 46789999999999999999998421 10000 000011110 1112233456
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccch
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~ 422 (694)
.+.||||+|.++|......++..+|++|||+|.+... .|.. .....+..++.. ++| +|+|.||+|+.+...
T Consensus 54 ~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~---Sf~~---~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~ 126 (182)
T cd04172 54 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDS---VLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLT 126 (182)
T ss_pred EEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHHCCCCC-EEEEeEChhhhcChh
Confidence 7899999999999887777889999999999998641 1111 111222222222 455 899999999853110
Q ss_pred h-------h-HhHHHHhhccchhcccccCCCceEEEeecccCCC-ccc
Q 005478 423 D-------R-FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (694)
Q Consensus 423 e-------~-~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~n-I~e 461 (694)
. + ..-..++..++.+.+++ .+|+.+||++|.| +.+
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 170 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHH
Confidence 0 0 00012233344444442 4789999999998 976
No 248
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.46 E-value=2.2e-13 Score=128.36 Aligned_cols=130 Identities=22% Similarity=0.299 Sum_probs=91.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|.++|++++|||||+++|.+.... ...|..+.+ . =.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----------------------------------~~KTq~i~~-----~---~~ 39 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----------------------------------YKKTQAIEY-----Y---DN 39 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----------------------------------cCccceeEe-----c---cc
Confidence 6999999999999999999842111 112332221 1 14
Q ss_pred EEeCCC----ccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 348 VLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 348 liDtPG----h~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
+||||| +..|.+.++..+..||++++|.||+... ...--.++..+..| +|=||||+|+.. +.+
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~-----------~~~pP~fa~~f~~p-vIGVITK~Dl~~-~~~ 106 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR-----------SVFPPGFASMFNKP-VIGVITKIDLPS-DDA 106 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC-----------ccCCchhhcccCCC-EEEEEECccCcc-chh
Confidence 599999 6678888888889999999999999742 11111344556666 999999999983 233
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+ ...++|+..|+. .++++|+.+|+|+.+
T Consensus 107 ~i~----~a~~~L~~aG~~----~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 107 NIE----RAKKWLKNAGVK----EIFEVSAVTGEGIEE 136 (143)
T ss_pred hHH----HHHHHHHHcCCC----CeEEEECCCCcCHHH
Confidence 333 334556666774 349999999999977
No 249
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.46 E-value=7.1e-13 Score=135.28 Aligned_cols=148 Identities=17% Similarity=0.100 Sum_probs=87.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+++|+...... . ..+...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-~---------------------------~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-H---------------------------AYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-c---------------------------CcCCCccccceEEEEEECCEEEEE
Confidence 479999999999999999997321100 0 000001111111222333455779
Q ss_pred EEEeCCCccchHHHHHhhcc-cCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 005478 347 VVLDSPGHKDFVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~-~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~~ 421 (694)
.||||||+..+.... .+. .+|++|+|+|++... .| ....+.+..+.. .++| +|+|.||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~---S~----~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~ 122 (221)
T cd04148 53 VVIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRS---SF----ERASELRIQLRRNRQLEDRP-IILVGNKSDLARSR 122 (221)
T ss_pred EEEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc
Confidence 999999998444332 334 899999999998742 11 112233333333 2466 99999999986421
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....++ ...+...++ .+++++||++|.|+.+
T Consensus 123 ~v~~~~----~~~~a~~~~-----~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 123 EVSVQE----GRACAVVFD-----CKFIETSAGLQHNVDE 153 (221)
T ss_pred eecHHH----HHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 111111 112222222 4689999999999976
No 250
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.7e-13 Score=129.47 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=102.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec--C
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~--~ 342 (694)
-.++|+++|..|+|||-|+-|+.. +...+....-|-+|.....++. +
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~-------------------------------~~f~e~~~sTIGVDf~~rt~e~~gk 56 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKD-------------------------------DTFTESYISTIGVDFKIRTVELDGK 56 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhcc-------------------------------CCcchhhcceeeeEEEEEEeeecce
Confidence 468999999999999999999972 1122222233334555555544 4
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
...++||||+|+++|...+.++++.|+++|+|+|.+.. ..|+.+ .+...-+.....-+++ .++|.||+|+.+...
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~---~SF~~v-~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ---ESFNNV-KRWIQEIDRYASENVP-KLLVGNKCDLTEKRV 131 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH---HHhhhH-HHHHHHhhhhccCCCC-eEEEeeccccHhhee
Confidence 56799999999999999999999999999999999873 344433 2222222222233566 689999999875222
Q ss_pred hhHhHHHHhhccchhcccccCCCce-EEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLT-WIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~-~IpvSA~~G~nI~e 461 (694)
-..++ ...+...++ ++ |+++||+.+.|+++
T Consensus 132 v~~~~----a~~fa~~~~-----~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 132 VSTEE----AQEFADELG-----IPIFLETSAKDSTNVED 162 (205)
T ss_pred cCHHH----HHHHHHhcC-----CcceeecccCCccCHHH
Confidence 11221 223333334 34 89999999999976
No 251
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=9.9e-13 Score=129.68 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=92.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEE-EEEEEecCCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~-~~~~~~~~~~~ 345 (694)
++|+++|..++|||||+.+++... ... +..+.+.... ....++.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~--f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC--YPE-----------------------------TYVPTVFENYTASFEIDEQRIE 50 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc--CCC-----------------------------CcCCceEEEEEEEEEECCEEEE
Confidence 579999999999999999998421 000 0001111111 11122334467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccchh
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~e 423 (694)
+.||||||++.|.......+..+|++|||+|.+... .|. .....++..++.. .+| +|+|.||+|+.+....
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~---Sf~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~ 123 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE---TLD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLST 123 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh---hHH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhH
Confidence 889999999999877777888999999999997642 111 1112222233322 445 8999999998631000
Q ss_pred -------hH-hHHHHhhccchhcccccCCCceEEEeecccCCC-ccc
Q 005478 424 -------RF-DSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (694)
Q Consensus 424 -------~~-~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~n-I~e 461 (694)
+. .-..++..++.+.+++ .+|+.+||++|+| +.+
T Consensus 124 ~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~ 166 (178)
T cd04131 124 LMELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRD 166 (178)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHH
Confidence 00 0011223333334432 3689999999995 876
No 252
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.45 E-value=7e-13 Score=120.96 Aligned_cols=107 Identities=25% Similarity=0.302 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+|+|.+|+|||||+++|++...... ...++.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~------------------------------~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKV------------------------------SNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEE------------------------------SSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccc------------------------------cccccceeeeeeeeeeeceeeEE
Confidence 589999999999999999995321111 11245566665566677889999
Q ss_pred EEeCCCccc---------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 348 VLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 348 liDtPGh~~---------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
|+||||..+ ........+..+|++|+|+|+.... ..+..+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~--------~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI--------TEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS--------HHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC--------CHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999533 3444666678899999999987631 234455556665 5555 9999998
No 253
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.45 E-value=8.4e-13 Score=116.30 Aligned_cols=86 Identities=26% Similarity=0.279 Sum_probs=77.4
Q ss_pred eeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 005478 585 ATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 659 (694)
Q Consensus 585 ~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~ 659 (694)
+.+|+|++.||++ +.||..||++.+|+++.++.|+|..| + .+++|++|+.+.|+|.|.+|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 5789999999996 58999999999999999999999865 2 2568999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEEEee
Q 005478 660 VEEFSNCRALGRAFLRSSGRTIAVGIVTRI 689 (694)
Q Consensus 660 ~e~~~~~~~lgrfiLr~~g~Tvg~G~V~~v 689 (694)
+++ +|||+||+.++|||+|+|+++
T Consensus 70 ~~~------g~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEK------GQRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred Eee------CCEEEEEECCEEEEEEEEEeC
Confidence 887 479999999999999999874
No 254
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=1e-12 Score=135.02 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=94.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|..++|||+|+.+|+... ..... ...-|..... ...+.....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~--F~~~y---------------------------~pTi~~~~~~-~i~~~~~~v 61 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC--YPETY---------------------------VPTVFENYTA-GLETEEQRV 61 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC--CCCCc---------------------------CCceeeeeEE-EEEECCEEE
Confidence 46899999999999999999998421 10000 0000111111 112233456
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-c-CCCcEEEEEecccccccch
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVVVNK~Dlv~~~~ 422 (694)
.+.||||+|++.|......++..+|++|||+|.+... .| ......++..+.. . ++| +|+|.||+|+.....
T Consensus 62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~---Sf---~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~ 134 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TV---DSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLS 134 (232)
T ss_pred EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH---HH---HHHHHHHHHHHHHhCCCCC-EEEEEECcccccccc
Confidence 7899999999999887777889999999999998642 11 1111122222332 2 455 899999999853110
Q ss_pred h--------hHhHHHHhhccchhcccccCCCceEEEeecccCC-Cccc
Q 005478 423 D--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (694)
Q Consensus 423 e--------~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~-nI~e 461 (694)
. ...-..++...+.+.+++ ..|+.+||++|+ |+.+
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e 178 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHS 178 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHH
Confidence 0 000012233444444443 258999999998 7977
No 255
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=7.7e-13 Score=130.25 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=102.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|.+++|||.|+-++...... ..+ -..-||........++....
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~----------------------~~~-------~sTiGIDFk~kti~l~g~~i 61 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFN----------------------TSF-------ISTIGIDFKIKTIELDGKKI 61 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCc----------------------CCc-------cceEEEEEEEEEEEeCCeEE
Confidence 5689999999999999999999832111 000 01123333333333444556
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
.+.+|||+|+++|...+-++++.|++++||+|.+.. ..|..+. ...+.+..-..-+++ +++|.||+|+......
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne---~Sfeni~-~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R~V- 135 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE---KSFENIR-NWIKNIDEHASDDVV-KILVGNKCDLEEKRQV- 135 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch---HHHHHHH-HHHHHHHhhCCCCCc-EEEeeccccccccccc-
Confidence 788999999999999999999999999999999863 2332221 122222222233677 7999999998741111
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
-.++-.++..++| +.|+.+||++|.||.+
T Consensus 136 ---~~e~ge~lA~e~G-----~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 136 ---SKERGEALAREYG-----IKFFETSAKTNFNIEE 164 (207)
T ss_pred ---cHHHHHHHHHHhC-----CeEEEccccCCCCHHH
Confidence 1223333444445 5889999999999987
No 256
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.43 E-value=9e-13 Score=132.50 Aligned_cols=142 Identities=21% Similarity=0.220 Sum_probs=89.5
Q ss_pred EeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEEEeC
Q 005478 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (694)
Q Consensus 272 vG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~liDt 351 (694)
+|..++|||||+.++++. ..... ....-|++.......++.....+.||||
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~~~---------------------------~~~Tig~~~~~~~~~~~~~~~~l~iwDt 51 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFEKK---------------------------YVATLGVEVHPLVFHTNRGPIRFNVWDT 51 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCCCC---------------------------CCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 699999999999999832 11000 0001222222222223334578999999
Q ss_pred CCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchhhHhHHH
Q 005478 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (694)
Q Consensus 352 PGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e~~~~i~ 429 (694)
||+++|...+..+++.+|++|+|+|++... .|. .....+..+.. -++| +|+|.||+|+... ....+
T Consensus 52 ~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~---S~~----~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~-~v~~~--- 119 (200)
T smart00176 52 AGQEKFGGLRDGYYIQGQCAIIMFDVTARV---TYK----NVPNWHRDLVRVCENIP-IVLCGNKVDVKDR-KVKAK--- 119 (200)
T ss_pred CCchhhhhhhHHHhcCCCEEEEEEECCChH---HHH----HHHHHHHHHHHhCCCCC-EEEEEECcccccc-cCCHH---
Confidence 999999888888899999999999998752 111 11222232332 2566 8999999998531 11111
Q ss_pred HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 430 ~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+ .+.+. ..+.++++||++|+|+.+
T Consensus 120 -~~-~~~~~-----~~~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 120 -SI-TFHRK-----KNLQYYDISAKSNYNFEK 144 (200)
T ss_pred -HH-HHHHH-----cCCEEEEEeCCCCCCHHH
Confidence 11 12222 235789999999999977
No 257
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.43 E-value=9.4e-13 Score=121.74 Aligned_cols=144 Identities=19% Similarity=0.150 Sum_probs=90.3
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeE-EEEEEEEEe--cCCeEEE
Q 005478 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT-MTVAVAYFD--SKNYHVV 347 (694)
Q Consensus 271 ivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiT-i~~~~~~~~--~~~~~v~ 347 (694)
|+|++++|||||+++|++...... + ...| .+.....+. .....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~------------------------------~--~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE------------------------------E--YETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc------------------------------c--cccchhheeeEEEEECCEEEEEE
Confidence 589999999999999995432100 0 0111 122222222 2367899
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHH---HHHHHHHHcCCCcEEEEEecccccccchhh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR---EHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~---e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~ 424 (694)
|||+||+..+.......+..+|++|+|+|+..+... ..... ..+......++| +++++||+|+.......
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVS 121 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchH
Confidence 999999999888888888999999999999975311 01111 122233345666 99999999987532222
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... ....... ...++++++|+.++.|+.+
T Consensus 122 ~~~----~~~~~~~----~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 122 EEE----LAEQLAK----ELGVPYFETSAKTGENVEE 150 (157)
T ss_pred HHH----HHHHHHh----hcCCcEEEEecCCCCChHH
Confidence 111 0111111 1246789999999999966
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.7e-13 Score=145.41 Aligned_cols=154 Identities=21% Similarity=0.233 Sum_probs=106.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...+.|||+|+||+|||||+|+|++....|... ++|+|.|.....|+.++
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp------------------------------v~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP------------------------------VPGTTRDAIEAQVTVNG 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC------------------------------CCCcchhhheeEeecCC
Confidence 456899999999999999999999876666544 48999999999999999
Q ss_pred eEEEEEeCCCccc---------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCC---------
Q 005478 344 YHVVVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--------- 405 (694)
Q Consensus 344 ~~v~liDtPGh~~---------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi--------- 405 (694)
+.+.|+||+|.++ =+......+.+||++++||||....++. .......+...+.
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s--------d~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES--------DLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc--------chHHHHHHHHhccceEEEeccc
Confidence 9999999999766 1222344567899999999998765442 2223333333221
Q ss_pred --CcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceE-EEeecccCCCccc
Q 005478 406 --DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTW-IPLSALENQNLVT 461 (694)
Q Consensus 406 --p~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~-IpvSA~~G~nI~e 461 (694)
.++|+++||+|+...-. ++......++...+. ...++ +.+|+++++|+..
T Consensus 388 ~~~~~i~~~nk~D~~s~~~----~~~~~~~~~~~~~~~--~~~~i~~~vs~~tkeg~~~ 440 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSKIP----EMTKIPVVYPSAEGR--SVFPIVVEVSCTTKEGCER 440 (531)
T ss_pred cccceEEEechhhccCccc----cccCCceeccccccC--cccceEEEeeechhhhHHH
Confidence 45889999999874211 111111122222121 12344 4499999999976
No 259
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.41 E-value=2.4e-12 Score=131.39 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=91.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEE-EEEEEecCCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~-~~~~~~~~~~~ 345 (694)
++|+|+|..++|||+|+.+|+... .. ++-.+.+..+. ....++.....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~-----------------------------~~y~pTi~~~~~~~~~~~~~~v~ 50 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YP-----------------------------GSYVPTVFENYTASFEIDKRRIE 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------CccCCccccceEEEEEECCEEEE
Confidence 589999999999999999998421 00 00001110011 11122334467
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccchh
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~~e 423 (694)
+.||||+|++.|.......+..+|++|||+|.+... .|+. ........++. -++| +|+|.||+|+... ..
T Consensus 51 L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~---Sf~~---i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~-~~ 122 (222)
T cd04173 51 LNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE---TLDS---VLKKWQGETQEFCPNAK-VVLVGCKLDMRTD-LA 122 (222)
T ss_pred EEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH---HHHH---HHHHHHHHHHhhCCCCC-EEEEEECcccccc-hh
Confidence 889999999999888888889999999999998642 1111 10111112222 2456 9999999998642 11
Q ss_pred hHhH--------H-HHhhccchhcccccCCCceEEEeecccCCC-ccc
Q 005478 424 RFDS--------I-KVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (694)
Q Consensus 424 ~~~~--------i-~~~l~~~l~~~g~~~~~v~~IpvSA~~G~n-I~e 461 (694)
..+. + .++...+.+..+ .++|+.+||++++| +.+
T Consensus 123 ~~~~~~~~~~~pIs~e~g~~~ak~~~----~~~y~E~SAk~~~~~V~~ 166 (222)
T cd04173 123 TLRELSKQRLIPVTHEQGTVLAKQVG----AVSYVECSSRSSERSVRD 166 (222)
T ss_pred hhhhhhhccCCccCHHHHHHHHHHcC----CCEEEEcCCCcCCcCHHH
Confidence 1111 1 112222222333 24789999999985 876
No 260
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.40 E-value=3.4e-12 Score=122.45 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=95.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+++|+.++|||||+++|.+.. .... .....|.........++.....+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPEN---------------------------YIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTSS---------------------------SETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--cccc---------------------------cccccccccccccccccccccccc
Confidence 69999999999999999998431 1000 011123333333333344556799
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH-HcC-CCcEEEEEecccccccchhhH
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFG-VDQLIVAVNKMDAVQYSKDRF 425 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lg-ip~iIVVVNK~Dlv~~~~e~~ 425 (694)
|||++|+.+|.......+..+|++|+|+|.+.. ..+.. ....+..+. ... -+++|||.||.|+.+..+-..
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~---~S~~~----~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~ 124 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE---ESFEN----LKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV 124 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBH---HHHHT----HHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH
T ss_pred ccccccccccccccccccccccccccccccccc---ccccc----cccccccccccccccccceeeeccccccccccchh
Confidence 999999999987777778899999999998863 22221 122222222 233 234999999999875222111
Q ss_pred hHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 426 ~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
++...+.+.++ .+++.+||+++.|+.+
T Consensus 125 ----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 125 ----EEAQEFAKELG-----VPYFEVSAKNGENVKE 151 (162)
T ss_dssp ----HHHHHHHHHTT-----SEEEEEBTTTTTTHHH
T ss_pred ----hHHHHHHHHhC-----CEEEEEECCCCCCHHH
Confidence 22333333333 5889999999999976
No 261
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.40 E-value=2.2e-12 Score=112.84 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=75.3
Q ss_pred eeEEEEEEEEecC-----CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 005478 585 ATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 659 (694)
Q Consensus 585 ~~~f~a~v~vl~~-----~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~pi~ 659 (694)
+..|+|++.+|++ +.||+.||++.+|+|+..+.|+|..|. ++++|++|+.+.|+|.|++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 5789999999986 479999999999999999999998663 4578999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEE
Q 005478 660 VEEFSNCRALGRAFLRSSGRTIAVGIV 686 (694)
Q Consensus 660 ~e~~~~~~~lgrfiLr~~g~Tvg~G~V 686 (694)
+++ +|||+||+.++|||+|+|
T Consensus 70 ~~~------~~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEK------GLRFAIREGGRTVGAGVI 90 (90)
T ss_pred Eec------CCEEEEecCCcEEEEEEC
Confidence 887 479999999999999986
No 262
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.39 E-value=2.2e-12 Score=121.55 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=101.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+.++|.|+|.-|||||||+++|.+.... ......|. ....+..+++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~------------------------------~i~pt~gf----~Iktl~~~~~ 60 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD------------------------------TISPTLGF----QIKTLEYKGY 60 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc------------------------------ccCCccce----eeEEEEecce
Confidence 4789999999999999999999853211 01111222 2234556889
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH----HHHHHcCCCcEEEEEeccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA----QLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l----~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
.+++||..|+..+..-+-.++..+|++|+|||.+... . ...+..++ .--+..|.+ ++|+.||.|+...
T Consensus 61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~---r----~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM---R----MQECKQELTELLVEERLAGAP-LLVLANKQDLPGA 132 (185)
T ss_pred EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH---H----HHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc
Confidence 9999999999999999999999999999999997632 1 11222222 222235666 8999999998742
Q ss_pred chhhHhHHH--HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIK--VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~--~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
-..+++. ..+..+++. ..++++.+||.+|+++.+
T Consensus 133 --l~~~~i~~~~~L~~l~ks-----~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 133 --LSLEEISKALDLEELAKS-----HHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred --cCHHHHHHhhCHHHhccc-----cCceEEEEeccccccHHH
Confidence 2222232 334444433 346889999999999865
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.39 E-value=3.2e-12 Score=144.08 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=75.6
Q ss_pred CeEEEEEeCCCccc-----hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCC--CcEEEEEecc
Q 005478 343 NYHVVVLDSPGHKD-----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKM 415 (694)
Q Consensus 343 ~~~v~liDtPGh~~-----f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi--p~iIVVVNK~ 415 (694)
..+++|+||||... +.+.|...+..+|++|+|||+..+. .....+.+..++..+. | +|+|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~--------s~~DeeIlk~Lkk~~K~~P-VILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLK--------SISDEEVREAILAVGQSVP-LYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCC--------ChhHHHHHHHHHhcCCCCC-EEEEEEcc
Confidence 46799999999432 4556778889999999999998752 2355666777777774 6 99999999
Q ss_pred cccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 416 Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+.+......+.+.+.+...+....+ ....++|+||++|.|+..
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANR 343 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHH
Confidence 98742222234444444444333333 234679999999999976
No 264
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.3e-12 Score=125.50 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=103.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE--ecC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSK 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~--~~~ 342 (694)
..++++++|..++|||.|+.+++...-.. .+. .-+-++.+...+ +..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~-----------------------------~hd--~TiGvefg~r~~~id~k 53 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQP-----------------------------VHD--LTIGVEFGARMVTIDGK 53 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccc-----------------------------ccc--ceeeeeeceeEEEEcCc
Confidence 35789999999999999999998321110 000 112223333333 445
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCc--EEEEEeccccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQY 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~--iIVVVNK~Dlv~~ 420 (694)
...++||||+||+.|...+.++++.|-+||||+|.+... .|. ....+|.-+++.+.+. ++++.||+|+...
T Consensus 54 ~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~---sF~----hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 54 QIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRE---SFN----HLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred eEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchh---hHH----HHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 677999999999999999999999999999999998642 222 2233444455544322 6788899999742
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
. +--.++-..+.++.|+ .|+.+||++++|+++.
T Consensus 127 R----~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 127 R----EVSKEEGEAFAREHGL-----IFMETSAKTAENVEEA 159 (216)
T ss_pred c----cccHHHHHHHHHHcCc-----eeehhhhhhhhhHHHH
Confidence 1 2234555666667664 6789999999999874
No 265
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.38 E-value=4.4e-12 Score=127.75 Aligned_cols=113 Identities=22% Similarity=0.290 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--cCCeE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNYH 345 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~--~~~~~ 345 (694)
+|+++|++++|||||+.+|+.....-+ ...++.......+. ..+..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--------------------------------~~s~~~~~~~~~~~~~~~~~~ 49 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--------------------------------VTSIEPNVATFILNSEGKGKK 49 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--------------------------------cCcEeecceEEEeecCCCCce
Confidence 699999999999999999984311000 01111112222222 34678
Q ss_pred EEEEeCCCccchHHHHHhhcccC-CEEEEEEecCCCccccccccchhHHHHHHH-HHH---H--cCCCcEEEEEeccccc
Q 005478 346 VVVLDSPGHKDFVPNMISGATQS-DAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIR---S--FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~a-D~aILVVDa~~g~~e~~~~~~~~qt~e~l~-ll~---~--lgip~iIVVVNK~Dlv 418 (694)
+.|||||||.+|...+...+..+ +++|+|||+.... .. ...+.+.+. ++. . -++| ++||+||+|+.
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~--~~----~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~ 122 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ--KN----LKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLF 122 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch--hH----HHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhc
Confidence 99999999999988888888888 9999999998641 00 112223221 111 1 2666 99999999987
Q ss_pred c
Q 005478 419 Q 419 (694)
Q Consensus 419 ~ 419 (694)
.
T Consensus 123 ~ 123 (203)
T cd04105 123 T 123 (203)
T ss_pred c
Confidence 5
No 266
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.38 E-value=2.5e-12 Score=123.46 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=101.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
+...++|+|+|.+|+|||+|++++.+..-. ... + ..-|...-.....++..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~----------~qy----k---------------aTIgadFltKev~Vd~~ 56 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------QQY----K---------------ATIGADFLTKEVQVDDR 56 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHH----------HHh----c---------------cccchhheeeEEEEcCe
Confidence 346799999999999999999999853210 000 0 00111111222233434
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC------CCcEEEEEeccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG------VDQLIVAVNKMD 416 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg------ip~iIVVVNK~D 416 (694)
-..++||||+|+++|...-..-++.||.++||.|..... .|+. ...++-.++.... .| +||+.||+|
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~---Sfe~---L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD 129 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPK---SFEN---LENWRKEFLIQASPQDPETFP-FVILGNKID 129 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCChh---hhcc---HHHHHHHHHHhcCCCCCCccc-EEEEccccc
Confidence 456789999999999998888899999999999988642 2332 3344445555543 25 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+-+. ..+.. -.......++.- .++|++.+||+.+.|+..
T Consensus 130 ~~~~-~~r~V-S~~~Aq~WC~s~----gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 130 VDGG-KSRQV-SEKKAQTWCKSK----GNIPYFETSAKEATNVDE 168 (210)
T ss_pred CCCC-cccee-eHHHHHHHHHhc----CCceeEEecccccccHHH
Confidence 8541 11211 111222333322 478999999999999976
No 267
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.37 E-value=3.2e-12 Score=123.51 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=83.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|+.++|||||+.+++... .... . ....+. . .....++.....+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~--f~~~-------------------------~--~~~~~~-~-~~~i~~~~~~~~l 49 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS--YVQL-------------------------E--SPEGGR-F-KKEVLVDGQSHLL 49 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC--CCCC-------------------------C--CCCccc-e-EEEEEECCEEEEE
Confidence 479999999999999999987421 1000 0 000010 0 0111222223568
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccch
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~~~ 422 (694)
.||||+|.+.. ..+..+|++|+|+|.+... .|+ ....++..+.. -++| +++|.||+|+...+.
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~---sf~----~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~ 116 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEA---SFQ----TVYNLYHQLSSYRNISEIP-LILVGTQDAISESNP 116 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCC
Confidence 89999999753 2346799999999998642 221 11222223332 2345 899999999853111
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.... .++..++.+.. ..+.|+++||++|.||.+
T Consensus 117 ~~v~--~~~~~~~~~~~----~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 117 RVID--DARARQLCADM----KRCSYYETCATYGLNVER 149 (158)
T ss_pred cccC--HHHHHHHHHHh----CCCcEEEEecCCCCCHHH
Confidence 1111 11112222221 135789999999999977
No 268
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.36 E-value=4e-12 Score=125.93 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=87.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEE-EEEEEEecCCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSKNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~-~~~~~~~~~~~~ 345 (694)
.+|+|+|+.++|||||+++|+... .... ..+.+... .....+......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~ 50 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPEE-----------------------------YHPTVFENYVTDCRVDGKPVQ 50 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc-----------------------------cCCcccceEEEEEEECCEEEE
Confidence 479999999999999999997321 1000 00000000 011112222356
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccch-
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK- 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~- 422 (694)
+.+|||||+..|.......+..+|++|+|+|.+... .+. .....++..++.. .+| +|+|.||+|+.....
T Consensus 51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~ 123 (187)
T cd04129 51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---SLE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVA 123 (187)
T ss_pred EEEEECCCChhccccchhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCccc
Confidence 889999999887654444668899999999987532 111 1111122333222 455 999999999854110
Q ss_pred ------hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 ------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 ------e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.++.. .++...+.+.++. .+++++||++|.|+.+
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 124 KEEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGVDD 163 (187)
T ss_pred ccccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCHHH
Confidence 11110 1122223333332 4689999999999977
No 269
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=7.8e-12 Score=130.55 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=100.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec
Q 005478 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 262 ~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~ 341 (694)
-....+.|+|+|+||+|||||++.|+.....|... +-+|-.+...+|+.
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y-------------------------------PFTTK~i~vGhfe~ 212 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY-------------------------------PFTTKGIHVGHFER 212 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC-------------------------------CccccceeEeeeec
Confidence 33456789999999999999999999877666433 23455667778888
Q ss_pred CCeEEEEEeCCCccc--------hHHHHHhhcc-cCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005478 342 KNYHVVVLDSPGHKD--------FVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (694)
Q Consensus 342 ~~~~v~liDtPGh~~--------f~~~~i~~~~-~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVV 412 (694)
...++++|||||.-| --...+.+++ ..+++|+++|.+.- +|+. +..|..-.-.+-..+..| +++|+
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy~-lE~Q~~L~~eIk~~f~~p-~v~V~ 287 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGYS-LEEQISLLEEIKELFKAP-IVVVI 287 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCCC-HHHHHHHHHHHHHhcCCC-eEEEE
Confidence 889999999999433 1222333443 37899999999863 3332 233432222333345545 99999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||+|..+ .+.++++...+.. .|. ..+..+++..+.+++.
T Consensus 288 nK~D~~~--~e~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 288 NKIDIAD--EEKLEEIEASVLE----EGG----EEPLKISATKGCGLDK 326 (346)
T ss_pred ecccccc--hhHHHHHHHHHHh----hcc----ccccceeeeehhhHHH
Confidence 9999884 4555555443322 221 1235677777777654
No 270
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.35 E-value=5.8e-12 Score=126.18 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=90.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-CCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-~~~~ 345 (694)
++|+++|.+|+|||||+|+|++..... .+.. ... ...+|.... .+.. ....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~----------------~~~~----~~~------~~~~t~~~~--~~~~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE----------------EGAA----PTG------VVETTMKRT--PYPHPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC----------------CCcc----ccC------ccccccCce--eeecCCCCC
Confidence 689999999999999999998531100 0000 000 001121111 1111 2346
Q ss_pred EEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 346 v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
+.+|||||..+ |... ..+..+|++|+|.+.. +......++..++..+.+ +++|+||+|+.
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~ 120 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGKK-FYFVRTKVDRD 120 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCCC-EEEEEecccch
Confidence 89999999643 3322 2356789988886543 123455666777778877 99999999985
Q ss_pred ccch-----------hhHhHHHHhhccchhcccccCCCceEEEeecc--cCCCcc
Q 005478 419 QYSK-----------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL--ENQNLV 460 (694)
Q Consensus 419 ~~~~-----------e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~--~G~nI~ 460 (694)
...+ .-++++++.+...++..+.. ..+++.+|+. .+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~--~p~v~~vS~~~~~~~~~~ 173 (197)
T cd04104 121 LSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS--EPPVFLVSNFDPSDYDFP 173 (197)
T ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC--CCCEEEEeCCChhhcChH
Confidence 3222 12445555555555544442 3478999998 455653
No 271
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=1.8e-11 Score=123.95 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=92.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+..++|+++|+.|+|||||+++++.. ..... .....|..+..........
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~--~~~~~---------------------------~~~t~~~~~~~~~~~~~~~ 56 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTG--EFEKK---------------------------YIPTLGVEVHPLKFYTNCG 56 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhC--CCCCC---------------------------CCCccceEEEEEEEEECCe
Confidence 445689999999999999999887631 11000 0011222222222222345
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH-H-cCCCcEEEEEeccccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-S-FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~-lgip~iIVVVNK~Dlv~~ 420 (694)
...+.+|||||+.+|.......+..++++|+|+|.+.... + ......+..+. . -.+| ++++.||+|+.+.
T Consensus 57 ~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 57 PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---Y----KNVPNWHRDIVRVCENIP-IVLVGNKVDVKDR 128 (215)
T ss_pred EEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhCCCCC-EEEEEECccCccc
Confidence 5789999999999987777777788999999999986421 1 11111222221 2 2455 8889999998631
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... .+. ..+.+.. .+.++++||++|.|+.+
T Consensus 129 -~~~-~~~----~~~~~~~-----~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 129 -QVK-ARQ----ITFHRKK-----NLQYYDISAKSNYNFEK 158 (215)
T ss_pred -cCC-HHH----HHHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 111 111 1222222 24689999999999966
No 272
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.33 E-value=7.7e-12 Score=125.07 Aligned_cols=134 Identities=22% Similarity=0.286 Sum_probs=88.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|.+|+|||||+|.|++....... ...++.|.......+.+.+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK-----------------------------LSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc-----------------------------cCCCCcccccceeeEEECCeEE
Confidence 47999999999999999999965332111 0124667776666677789999
Q ss_pred EEEeCCCccch-------HHHHHh----hcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cC---CCcEEEE
Q 005478 347 VVLDSPGHKDF-------VPNMIS----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLIVA 411 (694)
Q Consensus 347 ~liDtPGh~~f-------~~~~i~----~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lg---ip~iIVV 411 (694)
+||||||..+. ...+.. ....+|++|+|+++.+ . .......+..+.. +| .+++||+
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~--------t~~d~~~l~~l~~~fg~~~~~~~ivv 122 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-F--------TEEEEQAVETLQELFGEKVLDHTIVL 122 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-c--------CHHHHHHHHHHHHHhChHhHhcEEEE
Confidence 99999996543 222222 2356899999999976 2 2345555655554 34 2458999
Q ss_pred EecccccccchhhHhH----HHHhhccchhccc
Q 005478 412 VNKMDAVQYSKDRFDS----IKVQLGTFLRSCG 440 (694)
Q Consensus 412 VNK~Dlv~~~~e~~~~----i~~~l~~~l~~~g 440 (694)
+|+.|.... ..+++ ....+..+++.++
T Consensus 123 ~T~~d~l~~--~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 123 FTRGDDLEG--GTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred EECccccCC--CcHHHHHHhccHHHHHHHHHhC
Confidence 999997752 22222 2345556665554
No 273
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=6.7e-12 Score=123.22 Aligned_cols=148 Identities=19% Similarity=0.239 Sum_probs=99.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
-.++|+++|.+++|||-|+.|++...-.+.++ ..-|+........++.+-.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~Sk-----------------------------sTIGvef~t~t~~vd~k~v 63 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESK-----------------------------STIGVEFATRTVNVDGKTV 63 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccc-----------------------------cceeEEEEeeceeecCcEE
Confidence 45789999999999999999998433222211 1133333333334445566
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHHHc------CCCcEEEEEecccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSF------GVDQLIVAVNKMDA 417 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~l------gip~iIVVVNK~Dl 417 (694)
..+||||+|+++|..-+-++.+.|-+|+||.|.+.. +|.+++ ++|++| +++ +++|.||+||
T Consensus 64 kaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~-----------~Tfenv~rWL~ELRdhad~niv-imLvGNK~DL 131 (222)
T KOG0087|consen 64 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR-----------QTFENVERWLKELRDHADSNIV-IMLVGNKSDL 131 (222)
T ss_pred EEeeecccchhhhccccchhhcccceeEEEEechhH-----------HHHHHHHHHHHHHHhcCCCCeE-EEEeecchhh
Confidence 788999999999998888999999999999999753 444332 333333 455 7899999998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
..-..-. .++-..+.+. ..+.|+.+||+.+.|+.+.
T Consensus 132 ~~lraV~----te~~k~~Ae~-----~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 132 NHLRAVP----TEDGKAFAEK-----EGLFFLETSALDATNVEKA 167 (222)
T ss_pred hhccccc----hhhhHhHHHh-----cCceEEEecccccccHHHH
Confidence 7411111 1122222222 2357899999999999764
No 274
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.32 E-value=1.5e-11 Score=123.25 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=64.9
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHH-HHHHHHHH--cCCCcEEEEEecccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRS--FGVDQLIVAVNKMDA 417 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~-e~l~ll~~--lgip~iIVVVNK~Dl 417 (694)
.....+.||||+|++++.. ..++..+|++|||+|.+... .|+ ... .++..++. -++| +|+|.||+|+
T Consensus 63 ~~~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~---Sf~----~~~~~w~~~i~~~~~~~p-iilvgNK~DL 132 (195)
T cd01873 63 GVSVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPN---SLR----NVKTMWYPEIRHFCPRVP-VILVGCKLDL 132 (195)
T ss_pred CEEEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChh---HHH----HHHHHHHHHHHHhCCCCC-EEEEEEchhc
Confidence 3457899999999876432 23578899999999998642 111 111 12222322 2456 8999999998
Q ss_pred cccchh---------------hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 418 VQYSKD---------------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 418 v~~~~e---------------~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+.... ...-..++...+.+.++ ++|+.+||++|.|+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V~e 186 (195)
T cd01873 133 RYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGVKD 186 (195)
T ss_pred cccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCHHH
Confidence 631100 00001223334444444 4789999999999976
No 275
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.31 E-value=3.3e-12 Score=119.71 Aligned_cols=151 Identities=21% Similarity=0.257 Sum_probs=99.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|.++|..|+|||+|+-+++... + |. .+...-|+...+....++.+..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~--f--------------------------d~-~~~~tIGvDFkvk~m~vdg~~~ 60 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT--F--------------------------DD-LHPTTIGVDFKVKVMQVDGKRL 60 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc--c--------------------------Cc-cCCceeeeeEEEEEEEEcCceE
Confidence 46899999999999999999998321 1 10 0111134444455556677788
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc----CCCcEEEEEeccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~iIVVVNK~Dlv~~ 420 (694)
.+.||||+|+++|...+-++++.|.++|+|+|.+... .|.. . ...+..+... .+- .++|.||+|...
T Consensus 61 KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rd---tf~k---L-d~W~~Eld~Ystn~dii-kmlVgNKiDkes- 131 (209)
T KOG0080|consen 61 KLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRD---TFVK---L-DIWLKELDLYSTNPDII-KMLVGNKIDKES- 131 (209)
T ss_pred EEEEEeccchHhhhccCHhHhccCceeEEEEEccchh---hHHh---H-HHHHHHHHhhcCCccHh-Hhhhcccccchh-
Confidence 9999999999999999999999999999999998642 1111 1 1112222222 222 367899999752
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|.- -+++-..|.+.+. .-|+.+||++.+|+..
T Consensus 132 --~R~V-~reEG~kfAr~h~-----~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 132 --ERVV-DREEGLKFARKHR-----CLFIECSAKTRENVQC 164 (209)
T ss_pred --cccc-cHHHHHHHHHhhC-----cEEEEcchhhhccHHH
Confidence 1211 1233333444433 4689999999999965
No 276
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=129.87 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=99.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEE--EEEEEEec
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT--VAVAYFDS 341 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~--~~~~~~~~ 341 (694)
+-..-|++||.||+|||||+++++.....|....+ +|+. ++.... .
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~AkPKIadYpF-------------------------------TTL~PnLGvV~~-~ 204 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPF-------------------------------TTLVPNLGVVRV-D 204 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhcCCcccCCcc-------------------------------ccccCcccEEEe-c
Confidence 34456899999999999999999988777754432 2333 333333 3
Q ss_pred CCeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
....|++-|.||..+ +-...++.+..+-++++|||.+...-......+.....|.-.+-..|--++.+||+||
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NK 284 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNK 284 (369)
T ss_pred CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEec
Confidence 566799999999544 4445667778899999999998542100011111111222222122222337899999
Q ss_pred ccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 415 ~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||++. +++.++...+.+.... ++ ..++++||++++|+.+
T Consensus 285 iD~~~-~~e~~~~~~~~l~~~~---~~----~~~~~ISa~t~~g~~~ 323 (369)
T COG0536 285 IDLPL-DEEELEELKKALAEAL---GW----EVFYLISALTREGLDE 323 (369)
T ss_pred cCCCc-CHHHHHHHHHHHHHhc---CC----CcceeeehhcccCHHH
Confidence 99664 4666666666655543 22 1223499999999976
No 277
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=128.98 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=66.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.....|+++|.|++|||||++.|++....+.... -+|....-..+++++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~-------------------------------FTTl~~VPG~l~Y~g 109 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYP-------------------------------FTTLEPVPGMLEYKG 109 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccC-------------------------------ceecccccceEeecC
Confidence 3457899999999999999999997655543222 235555556678899
Q ss_pred eEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCC
Q 005478 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (694)
Q Consensus 344 ~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g 380 (694)
..++|+|+||... --+..++.++.||++|+|+|+...
T Consensus 110 a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 110 AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 9999999999543 124567788899999999999864
No 278
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.28 E-value=8.1e-11 Score=118.50 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=90.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-----c
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-----S 341 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~-----~ 341 (694)
++|+++|..++|||||+++|++..- .. .....-|.++......+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f--~~---------------------------~~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV--LG---------------------------RPSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CCCcceeeeEEEEEEEEcCCCCCC
Confidence 4799999999999999999984210 00 001112222322222221 1
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-------------------
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------------------- 402 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------------------- 402 (694)
....+.||||+|+++|.......+..+|++|||+|.+... .|. ....++..+..
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~---Sf~----~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~ 124 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK---SSQ----NLQRWSLEALNKDTFPTGLLVTNGDYDSEQ 124 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH---HHH----HHHHHHHHHHHhhccccccccccccccccc
Confidence 3467899999999999888778889999999999998752 111 11122222211
Q ss_pred ---cCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 403 ---FGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 403 ---lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.++| +|||.||+|+.+......+.....-..+.++++. +.|.+++.....+..
T Consensus 125 ~~~~~~P-iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~~~~~~~ 180 (202)
T cd04102 125 FGGNQIP-LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA-----EEINLNCTNGRLLAA 180 (202)
T ss_pred cCCCCce-EEEEEECccchhhcccchHHHhhHhhhHHHhcCC-----ceEEEecCCcccccC
Confidence 1456 9999999998742111111112222223334454 457778777666644
No 279
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3e-11 Score=111.89 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=99.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE----EEEe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV----AYFD 340 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~----~~~~ 340 (694)
-.++|+++|..|+|||.|+.+++.. ... ...|-||-+.+ ..+.
T Consensus 6 flfkivlvgnagvgktclvrrftqg--lfp-------------------------------pgqgatigvdfmiktvev~ 52 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG--LFP-------------------------------PGQGATIGVDFMIKTVEVN 52 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc--CCC-------------------------------CCCCceeeeeEEEEEEEEC
Confidence 3578999999999999999999842 111 12444554433 3344
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
.++..+.||||+|+++|..-+.++.+.|+++|||.|.+.. ..|+-+....+|.-.++ ...+- -|+|.||+|+.+.
T Consensus 53 gekiklqiwdtagqerfrsitqsyyrsahalilvydiscq---psfdclpewlreie~ya-n~kvl-kilvgnk~d~~dr 127 (213)
T KOG0095|consen 53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ---PSFDCLPEWLREIEQYA-NNKVL-KILVGNKIDLADR 127 (213)
T ss_pred CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccC---cchhhhHHHHHHHHHHh-hcceE-EEeeccccchhhh
Confidence 5677899999999999999999999999999999998753 23332222223322222 23333 3789999998742
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+.-+.+-+++... ...-|+.+||+..+|++.
T Consensus 128 -revp~qigeefs~~--------qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 128 -REVPQQIGEEFSEA--------QDMYFLETSAKEADNVEK 159 (213)
T ss_pred -hhhhHHHHHHHHHh--------hhhhhhhhcccchhhHHH
Confidence 12222333333322 123468899999999976
No 280
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.24 E-value=2.2e-11 Score=110.96 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=72.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
||+|+|..++|||||+++|++.... +........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6999999999999999999954322 0001111133344444444444555699
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc-----CCCcEEEEEeccc
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMD 416 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVVVNK~D 416 (694)
|||++|+..+.......+..+|++|+|+|++... .+ .+..+.+..+..+ .+| +|||.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~----~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SL----EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HH----HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChH---HH----HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 9999999887765444488899999999998642 11 1222233333333 366 999999998
No 281
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.4e-11 Score=111.24 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=97.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE--EEecCC
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFDSKN 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~--~~~~~~ 343 (694)
.++++++|+.|.|||.|+.+++...- -|.. . .-+-++.+.. .+..+.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf---------------------------kDds--s--HTiGveFgSrIinVGgK~ 57 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF---------------------------KDDS--S--HTIGVEFGSRIVNVGGKT 57 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh---------------------------cccc--c--ceeeeeecceeeeecCcE
Confidence 46899999999999999999983210 0100 0 1122233333 333456
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCc--EEEEEecccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYS 421 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~--iIVVVNK~Dlv~~~ 421 (694)
..+.||||+|+++|..-+..+++.|-+++||+|++... .| ...+ ..+.-++.|.-+. +|++.||-|+-...
T Consensus 58 vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrd---sf---naLt-nWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 58 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRD---SF---NALT-NWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceEEEEeccchh---hH---HHHH-HHHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 78899999999999999999999999999999998642 11 1222 2333445554443 56678999986432
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+..+. +...|.. ...+.|..+||++|+|+++
T Consensus 131 ~Vtfl----EAs~Faq-----Enel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 131 EVTFL----EASRFAQ-----ENELMFLETSALTGENVEE 161 (214)
T ss_pred hhhHH----HHHhhhc-----ccceeeeeecccccccHHH
Confidence 22222 2223322 2345789999999999987
No 282
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.23 E-value=5.3e-11 Score=120.87 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=109.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCc----------------------cchhhhhhHHHHHhhhCCCccchhhcccc
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGR----------------------ITQKQMHKYEKEAKLQGKGSFAYAWALDE 321 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~----------------------i~~~~~~~~~~~~~~~g~gs~~~~~~~d~ 321 (694)
..++.|.++|..|+||||++.+|..+... |+-|...+|...++.++-|.-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN-------- 88 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN-------- 88 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC--------
Confidence 34577999999999999999999877522 455566667777777665432
Q ss_pred chhhhccCeEEEEEEE--EE---------ecCCeEEEEEeCCCccchHHHHHhhc--------ccCCEEEEEEecCCCcc
Q 005478 322 SAEERERGITMTVAVA--YF---------DSKNYHVVVLDSPGHKDFVPNMISGA--------TQSDAAILVIDASVGSF 382 (694)
Q Consensus 322 ~~~Er~~GiTi~~~~~--~~---------~~~~~~v~liDtPGh~~f~~~~i~~~--------~~aD~aILVVDa~~g~~ 382 (694)
.||+..+... .| ..+...+.||||||+.+.+.+..+|. ..+-++++|||.....-
T Consensus 89 ------GgI~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~ 162 (366)
T KOG1532|consen 89 ------GGIVTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS 162 (366)
T ss_pred ------cchhhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC
Confidence 2332211100 00 01345689999999877544433332 23668899999876432
Q ss_pred ccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc-----hhhHhHHHHhhcc--------chhccccc----CCC
Q 005478 383 EVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS-----KDRFDSIKVQLGT--------FLRSCGFK----DAS 445 (694)
Q Consensus 383 e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~-----~e~~~~i~~~l~~--------~l~~~g~~----~~~ 445 (694)
..- ++........++....+| +|||+||.|+.+.. -..|+.+.+.+.. +...+.+. -.+
T Consensus 163 p~t---FMSNMlYAcSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~ 238 (366)
T KOG1532|consen 163 PTT---FMSNMLYACSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRS 238 (366)
T ss_pred chh---HHHHHHHHHHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhh
Confidence 211 234445556677778899 99999999987521 1122333333221 11111000 035
Q ss_pred ceEEEeecccCCCccc
Q 005478 446 LTWIPLSALENQNLVT 461 (694)
Q Consensus 446 v~~IpvSA~~G~nI~e 461 (694)
+..+.+|+.+|.|+.+
T Consensus 239 lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 239 LRTVGVSSVTGEGFDD 254 (366)
T ss_pred CceEEEecccCCcHHH
Confidence 6789999999999976
No 283
>PLN00023 GTP-binding protein; Provisional
Probab=99.22 E-value=1.2e-10 Score=123.81 Aligned_cols=142 Identities=20% Similarity=0.195 Sum_probs=87.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~- 341 (694)
....++|+|+|..++|||||+.+|+...- .. .....-|.+.......+..
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F--~~---------------------------~~~pTIG~d~~ik~I~~~~~ 68 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSS--IA---------------------------RPPQTIGCTVGVKHITYGSP 68 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCc--cc---------------------------ccCCceeeeEEEEEEEECCc
Confidence 45678999999999999999999984210 00 0011123333222233321
Q ss_pred ------------CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc------
Q 005478 342 ------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------ 403 (694)
Q Consensus 342 ------------~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l------ 403 (694)
....+.||||+|++.|...+-..+..+|++|+|+|.+... .+ ......+..+...
T Consensus 69 ~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~---SF----enL~kWl~eI~~~~~~s~p 141 (334)
T PLN00023 69 GSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR---TK----TSLQKWASEVAATGTFSAP 141 (334)
T ss_pred ccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH---HH----HHHHHHHHHHHHhcccccc
Confidence 2466999999999999988888899999999999998632 11 1222233333332
Q ss_pred ---------CCCcEEEEEecccccccchhhH--hHHHHhhccchhcccc
Q 005478 404 ---------GVDQLIVAVNKMDAVQYSKDRF--DSIKVQLGTFLRSCGF 441 (694)
Q Consensus 404 ---------gip~iIVVVNK~Dlv~~~~e~~--~~i~~~l~~~l~~~g~ 441 (694)
.+| +|||.||+|+......+. ....++..++.++.++
T Consensus 142 ~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 142 LGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 255 999999999964211011 0123445555555555
No 284
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=4.4e-11 Score=110.72 Aligned_cols=152 Identities=20% Similarity=0.188 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.++.|+|...+|||+|+-+.+...-. -++ -+.-|+...+...+-.-....+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt----------------------~af-------vsTvGidFKvKTvyr~~kRikl 72 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFT----------------------SAF-------VSTVGIDFKVKTVYRSDKRIKL 72 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccc----------------------cce-------eeeeeeeEEEeEeeecccEEEE
Confidence 48999999999999999888743211 111 1224555444444434456789
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
++|||+|++.|...+-.++++|++.||+.|.+... .|..++ .....+.-....+++ +|+|.||+|+-+ +|.-
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNee---Sf~svq-dw~tqIktysw~naq-vilvgnKCDmd~---eRvi 144 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNSVQ-DWITQIKTYSWDNAQ-VILVGNKCDMDS---ERVI 144 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHH---HHHHHH-HHHHHheeeeccCce-EEEEecccCCcc---ceee
Confidence 99999999999998999999999999999998642 232221 111112222345667 999999999863 2211
Q ss_pred HHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 427 ~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
-.+..+.+..++|| .|+.+||+.+.|+..
T Consensus 145 -s~e~g~~l~~~LGf-----efFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 145 -SHERGRQLADQLGF-----EFFETSAKENINVKQ 173 (193)
T ss_pred -eHHHHHHHHHHhCh-----HHhhhcccccccHHH
Confidence 12334455566776 679999999999966
No 285
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.18 E-value=3.2e-10 Score=114.62 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=96.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--C
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~--~ 343 (694)
.++|+++|..|+|||||+++|.+.... .+..+.+........+... .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFP-------------------------------EGYPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCc-------------------------------ccCCCceeeeeEEEEEEeCCCE
Confidence 489999999999999999999953211 1111222222222222222 5
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC---CCcEEEEEeccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAVQY 420 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg---ip~iIVVVNK~Dlv~~ 420 (694)
..+.+|||+|+.+|...+-.+...++++++|+|..... .....+.+....+..+. .+ +|+|.||+|+...
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~------~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRE------SSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccch------hhhHHHHHHHHHHHHhCCCCce-EEEEecccccccc
Confidence 67899999999999999999999999999999988521 11234444444555544 56 9999999999864
Q ss_pred chhhHhHHHHhhc---cchhcccc---c-CCCceEEEeecc--cCCCccc
Q 005478 421 SKDRFDSIKVQLG---TFLRSCGF---K-DASLTWIPLSAL--ENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~---~~l~~~g~---~-~~~v~~IpvSA~--~G~nI~e 461 (694)
.... ..+...+. .+...... . .....++.+|++ ++.++.+
T Consensus 127 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~ 175 (219)
T COG1100 127 QSSS-EEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNE 175 (219)
T ss_pred hhHH-HHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHH
Confidence 3221 11111110 00000000 0 012237899999 8888865
No 286
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.17 E-value=4.6e-10 Score=118.43 Aligned_cols=143 Identities=19% Similarity=0.276 Sum_probs=87.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~-- 343 (694)
.++|+++|+.|+|||||+++|++..-...... .+.......+.+++......++.++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~---------------------~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP---------------------PDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC---------------------CCccccccCCceEEEEEEEEEEECCEE
Confidence 57899999999999999999985422111000 0000111223333444444455555
Q ss_pred eEEEEEeCCCccchHH---------------------HHH-----hhcc--cCCEEEEEEecCCCccccccccchhHHHH
Q 005478 344 YHVVVLDSPGHKDFVP---------------------NMI-----SGAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~---------------------~~i-----~~~~--~aD~aILVVDa~~g~~e~~~~~~~~qt~e 395 (694)
..++||||||..++.. ... ..+. .+|++++++++.... +.....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-------l~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-------LKPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-------CCHHHHH
Confidence 5799999999654322 111 1111 378999999877421 2345566
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhccc
Q 005478 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 440 (694)
Q Consensus 396 ~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g 440 (694)
.+..+.. +++ +|+|+||+|++. .......++.+.+.+...+
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTLT--PEELKEFKQRIMEDIEEHN 176 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcCC--HHHHHHHHHHHHHHHHHcC
Confidence 6776664 677 999999999974 4445566777777776655
No 287
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.14 E-value=5.9e-10 Score=98.97 Aligned_cols=94 Identities=29% Similarity=0.396 Sum_probs=80.6
Q ss_pred CceeecCCCCcceeeEEEEEEEEecCC-CCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEE
Q 005478 572 GGVLCHPDFPVAIATHLELKVLVLDFA-PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (694)
Q Consensus 572 G~VL~~~~~~~~~~~~f~a~v~vl~~~-~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v 650 (694)
|+||+.++...+ ...|.+++.++... .|++.++++.||+|+..++|+|.-+ + .+.+.+|+.+++
T Consensus 1 G~vl~~~~~~~~-~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~ll----~----------~~~~~pg~~~~a 65 (97)
T cd04094 1 GDVLADPGSLLP-TRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVLL----D----------RDELAPGEEALA 65 (97)
T ss_pred CCEEecCCCcCC-ceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEeC----C----------ccccCCCCEEEE
Confidence 789998876544 68999999888743 6899999999999999999999722 2 145899999999
Q ss_pred EEEeCceEEeecccccCCcceEEEEeCC--cEEEEEEE
Q 005478 651 EVALQEPVCVEEFSNCRALGRAFLRSSG--RTIAVGIV 686 (694)
Q Consensus 651 ~l~l~~pi~~e~~~~~~~lgrfiLr~~g--~Tvg~G~V 686 (694)
+|+|++|+++...+ ||+||+.+ +|||+|+|
T Consensus 66 ~l~l~~pl~~~~gd------rfilR~~~~~~tiggG~V 97 (97)
T cd04094 66 QLRLEEPLVALRGD------RFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEECCcEeecCCC------eEEEeeCCCCeEEEeEEC
Confidence 99999999998765 99999988 99999986
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.13 E-value=1.1e-10 Score=120.32 Aligned_cols=171 Identities=18% Similarity=0.275 Sum_probs=85.3
Q ss_pred EEeCCCCCHHHHHHHHHHhhCcc----------------------chhhhhhHHHHHhhhCCCcc---chh--hcc---c
Q 005478 271 IVGHVDSGKSTLSGRLLFLLGRI----------------------TQKQMHKYEKEAKLQGKGSF---AYA--WAL---D 320 (694)
Q Consensus 271 ivG~vnaGKSTLi~~L~~~~g~i----------------------~~~~~~~~~~~~~~~g~gs~---~~~--~~~---d 320 (694)
|+|++||||||++++|....... +-+.+-..+..+++.+-|.- -++ ++. |
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999998765332 23444445555555544321 111 111 1
Q ss_pred cchhhhccCeEEEEEEEEEecCCeEEEEEeCCCccchHHHH------Hhhcc--cCCEEEEEEecCCCccccccccchhH
Q 005478 321 ESAEERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNM------ISGAT--QSDAAILVIDASVGSFEVGMNTAKGL 392 (694)
Q Consensus 321 ~~~~Er~~GiTi~~~~~~~~~~~~~v~liDtPGh~~f~~~~------i~~~~--~aD~aILVVDa~~g~~e~~~~~~~~q 392 (694)
...++-+ .. ...+.|+||||+.++...+ +..+. ..=++|+++|+..-.... .+...
T Consensus 81 ~l~~~i~------------~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~---~f~s~ 144 (238)
T PF03029_consen 81 WLDEEIE------------KY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPS---KFVSS 144 (238)
T ss_dssp HHHHHHH------------HH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHH---HHHHH
T ss_pred HHHHHHh------------hc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChh---hHHHH
Confidence 1111111 01 2268999999988764433 33333 355889999987532110 01112
Q ss_pred HHHHHHHHHHcCCCcEEEEEecccccccch----------hh--------HhHHHHhhccchhcccccCCCceEEEeecc
Q 005478 393 TREHAQLIRSFGVDQLIVAVNKMDAVQYSK----------DR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (694)
Q Consensus 393 t~e~l~ll~~lgip~iIVVVNK~Dlv~~~~----------e~--------~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~ 454 (694)
..-.+.....+++| .|.|+||+|+++... +. +..+...+..++...+. ...|+|+|+.
T Consensus 145 ~L~s~s~~~~~~lP-~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~ 220 (238)
T PF03029_consen 145 LLLSLSIMLRLELP-HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSK 220 (238)
T ss_dssp HHHHHHHHHHHTSE-EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTT
T ss_pred HHHHHHHHhhCCCC-EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECC
Confidence 22233344458999 799999999985110 00 23334455555555553 1278999999
Q ss_pred cCCCccc
Q 005478 455 ENQNLVT 461 (694)
Q Consensus 455 ~G~nI~e 461 (694)
+++|+.+
T Consensus 221 ~~~~~~~ 227 (238)
T PF03029_consen 221 DGEGMEE 227 (238)
T ss_dssp TTTTHHH
T ss_pred ChHHHHH
Confidence 9999976
No 289
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=1.7e-10 Score=118.15 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=97.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE-EEec
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA-YFDS 341 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~-~~~~ 341 (694)
..+++||.++|.+|+|||+|||+|.......... -|++.+.... ....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-------------------------------vg~~t~~~~~~~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-------------------------------VGVGTDITTRLRLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeee-------------------------------cccCCCchhhHHhhc
Confidence 4578999999999999999999999432211110 1111111111 1123
Q ss_pred CCeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCC-CcEEEEEe
Q 005478 342 KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVN 413 (694)
Q Consensus 342 ~~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi-p~iIVVVN 413 (694)
.+..++||||||..+ |....+..+...|++++++++.... .+.....++-+...+. .++|++||
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra--------L~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA--------LGTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc--------ccCCHHHHHHHHHhccCceeEEEEe
Confidence 557899999999665 7777888889999999999998763 1222233333333444 55999999
Q ss_pred cccccc----cch----------hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 414 KMDAVQ----YSK----------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 414 K~Dlv~----~~~----------e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..|+.. |+. +..++-.+.+.+++.. --|++.+++..+.|+..
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl~~ 212 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGLKE 212 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccHHH
Confidence 999864 221 1112222333344322 23678888889999866
No 290
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.4e-10 Score=112.12 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=103.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+...+|+++|--+|||||++..|-. +.+... - + |+-.....+++.+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~--~E~vtt----------------------------v--P--TiGfnVE~v~ykn 60 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVTT----------------------------V--P--TIGFNVETVEYKN 60 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeecc--CCcccC----------------------------C--C--ccccceeEEEEcc
Confidence 3457899999999999999988852 221100 0 1 4444455667789
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVVNK~Dlv~~~ 421 (694)
..+++||..|+.++.+.+..+....+++|+|||+++... +...-.|...++.. ++.-+++|..||.|+.+.-
T Consensus 61 ~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 61 ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------IEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred eEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 999999999999999999999999999999999987531 11111222223332 2333389999999987532
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ..++...|.-..+......+-.++|.+|+|+.+
T Consensus 135 s------~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 135 S------AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred C------HHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 1 223334443344444566788999999999976
No 291
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.3e-09 Score=119.31 Aligned_cols=250 Identities=24% Similarity=0.312 Sum_probs=152.3
Q ss_pred cccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEE
Q 005478 253 KWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 332 (694)
Q Consensus 253 ~~~~~~~~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi 332 (694)
..|..+...+..+++.||++|++|.|||||+..|.... +..+-.+...-||+
T Consensus 56 VPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~----------------------------tk~ti~~i~GPiTv 107 (1077)
T COG5192 56 VPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF----------------------------TKQTIDEIRGPITV 107 (1077)
T ss_pred cccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHH----------------------------HHhhhhccCCceEE
Confidence 34555666777788999999999999999999998321 11111122222444
Q ss_pred EEEEEEEecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005478 333 TVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (694)
Q Consensus 333 ~~~~~~~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVV 412 (694)
- ....++++|+.+| +-+..|+.-+..||++||+||++-|. ...|.|.|.++...|.|+++-|+
T Consensus 108 v------sgK~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGf--------EMETmEFLnil~~HGmPrvlgV~ 170 (1077)
T COG5192 108 V------SGKTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGF--------EMETMEFLNILISHGMPRVLGVV 170 (1077)
T ss_pred e------ecceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCc--------eehHHHHHHHHhhcCCCceEEEE
Confidence 2 3467899999999 34677888899999999999998762 46899999999999999999999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhhhc--cCCCCCC
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS--LRPPPRE 490 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L~~--l~~~~~~ 490 (694)
+..|+.. ++..+..+++.|..-+..--|+ ...++.+|...+--...+. . ..|-.+|.- +.|-...
T Consensus 171 ThlDlfk-~~stLr~~KKrlkhRfWtEiyq--GaKlFylsgV~nGRYpDre-i---------lnLsRfisVMKfRPl~Wr 237 (1077)
T COG5192 171 THLDLFK-NPSTLRSIKKRLKHRFWTEIYQ--GAKLFYLSGVENGRYPDRE-I---------LNLSRFISVMKFRPLEWR 237 (1077)
T ss_pred eeccccc-ChHHHHHHHHHHhhhHHHHHcC--CceEEEecccccCCCCCHH-H---------HHHHHHHhhhcccccccc
Confidence 9999986 3556666776665544333332 3456788876543332210 0 001111211 1111111
Q ss_pred CCCC---------cccceEeEEecC-CC-eEeeEEEEee-eeecCCCEEEEecCCeeeEEEeeeecccccc--eeccCCc
Q 005478 491 FSKP---------LLMPICDVLKSQ-HG-QVSACGKLEA-GALRSGLKVLVLPSGEVGTVHSIERDSQSCS--VARAGDN 556 (694)
Q Consensus 491 ~~~p---------l~~~I~~v~~~~-~G-~V~v~GrV~s-G~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~--~A~aGd~ 556 (694)
...| +.+|+ +++..+ +| .+.++|++.. |-.+....|.|...|. ..+..|+....||. .|.-|.+
T Consensus 238 n~HPy~laDR~~Dlt~p~-~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGD-f~~adve~L~DPcPp~~a~~~rr 315 (1077)
T COG5192 238 NMHPYVLADRVDDLTLPV-DIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGD-FRMADVEVLIDPCPPPDADHGRR 315 (1077)
T ss_pred cCCceeehhhhccccchh-hhhhccccCceEEEEEEecCCCCCCCCceEeccCccc-cchhhhhhcCCCCCCCcccchhh
Confidence 1122 22233 122222 33 3558999987 6777777777754443 44555555444444 2333444
Q ss_pred eeEEec
Q 005478 557 IAVSLQ 562 (694)
Q Consensus 557 V~l~L~ 562 (694)
-.|.++
T Consensus 316 RrLs~k 321 (1077)
T COG5192 316 RRLSLK 321 (1077)
T ss_pred cccchh
Confidence 444443
No 292
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.10 E-value=9e-10 Score=118.18 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=29.1
Q ss_pred CeEEEEEeCCCc----cch---HHHHHhhcccCCEEEEEEecCC
Q 005478 343 NYHVVVLDSPGH----KDF---VPNMISGATQSDAAILVIDASV 379 (694)
Q Consensus 343 ~~~v~liDtPGh----~~f---~~~~i~~~~~aD~aILVVDa~~ 379 (694)
...+.||||||. .++ ....+..++.||++|+|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 357999999996 222 3456777899999999999974
No 293
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.10 E-value=2.4e-10 Score=112.36 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE---ecCC
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---DSKN 343 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~---~~~~ 343 (694)
..|.++|+.|+|||+|+.+|.+....-+ -+.+.. ...+ ...+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T----------------------------------~tS~e~-n~~~~~~~~~~ 48 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPT----------------------------------VTSMEN-NIAYNVNNSKG 48 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B-------------------------------------SSE-EEECCGSSTCG
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCe----------------------------------eccccC-CceEEeecCCC
Confidence 4699999999999999999996411100 001101 1111 1245
Q ss_pred eEEEEEeCCCccchHHHHHhh---cccCCEEEEEEecCCCccccccccchhHHHHHHH-HHHH----cCCCcEEEEEecc
Q 005478 344 YHVVVLDSPGHKDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS----FGVDQLIVAVNKM 415 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~---~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~----lgip~iIVVVNK~ 415 (694)
..+.|||+|||.++....+.. +..+-++|+|||+..- ...+ ..+.|+|. ++.. .+.++++|+.||.
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~--~~~~----~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD--QKEL----RDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH--HHHH----HHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc--hhhH----HHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 679999999999987777665 7889999999999741 1111 22233321 1111 1334599999999
Q ss_pred cccc
Q 005478 416 DAVQ 419 (694)
Q Consensus 416 Dlv~ 419 (694)
|+..
T Consensus 123 Dl~~ 126 (181)
T PF09439_consen 123 DLFT 126 (181)
T ss_dssp TSTT
T ss_pred cccc
Confidence 9875
No 294
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=3.1e-10 Score=105.16 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=99.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++..|+|.+++|||+|+-++.... . .++ +.+ ..|+...+....+......+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt--F----------------s~s----Yit-------TiGvDfkirTv~i~G~~VkL 59 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT--F----------------SGS----YIT-------TIGVDFKIRTVDINGDRVKL 59 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc--c----------------ccc----eEE-------EeeeeEEEEEeecCCcEEEE
Confidence 467899999999999998887321 0 011 111 12222223333334455778
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccchhh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~e~ 424 (694)
.||||+|++.|...+..+.+..+++|+|+|.+.++ .| ...+..++.++.- .+| -|+|.||.|..+ |
T Consensus 60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E---SF----~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~----R 127 (198)
T KOG0079|consen 60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SF----NNVKRWLEEIRNNCDSVP-KVLVGNKNDDPE----R 127 (198)
T ss_pred EEeecccHHHHHHHHHHHccCCceEEEEEECcchh---hh----HhHHHHHHHHHhcCcccc-ceecccCCCCcc----c
Confidence 99999999999999999999999999999999874 22 3344445444432 346 488999999764 2
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..-..++.+.+...+| +.++.+||+..+|++.
T Consensus 128 rvV~t~dAr~~A~~mg-----ie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 128 RVVDTEDARAFALQMG-----IELFETSAKENENVEA 159 (198)
T ss_pred eeeehHHHHHHHHhcC-----chheehhhhhcccchH
Confidence 1112333444444444 4679999999999976
No 295
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.7e-10 Score=108.66 Aligned_cols=163 Identities=16% Similarity=0.131 Sum_probs=106.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+....|.|+|.-+||||||+.++-...... .......+ --.|.-.....++..+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~-------------------------~~~l~~~k-i~~tvgLnig~i~v~~ 68 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKA-------------------------YGGLNPSK-ITPTVGLNIGTIEVCN 68 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhh-------------------------hcCCCHHH-eecccceeecceeecc
Confidence 445679999999999999999986432110 00000000 0012233334455567
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
..+.|||..|++.....+..++..++++|+||||.... .|.....+.+..+.--..-|+| +++.+||-|+.+. .
T Consensus 69 ~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~e---R~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~--~ 142 (197)
T KOG0076|consen 69 APLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRE---RFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNA--M 142 (197)
T ss_pred ceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHH---HHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhh--h
Confidence 88999999999999999999999999999999999742 2222223344444444557889 8899999998752 2
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...++..-+.. .+.. ..+..+|.|+||++|+|+.+
T Consensus 143 ~~~El~~~~~~-~e~~--~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 143 EAAELDGVFGL-AELI--PRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hHHHHHHHhhh-hhhc--CCccCccccchhhhcccHHH
Confidence 23333333332 1122 22456889999999999976
No 296
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.05 E-value=4.6e-10 Score=104.09 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=99.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
+.+.++|--++|||||++.+... .-... -+-|+-...+.++-....+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g--~~~ed-------------------------------miptvGfnmrk~tkgnvti 67 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARG--QYLED-------------------------------MIPTVGFNMRKVTKGNVTI 67 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeec--cchhh-------------------------------hcccccceeEEeccCceEE
Confidence 56899999999999999887621 10000 1112223334455567789
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH---HHcCCCcEEEEEecccccccchh
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI---RSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll---~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
.+||.||+..|...+.++.+.++++++||||.+.. ++...-.|.-.++ ...|+| ++|..||.|+.+.-..
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~------k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~ 140 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD------KLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSK 140 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc------cchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccH
Confidence 99999999999999999999999999999998742 2222222322333 235788 8999999998753211
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..+..++ .-..+.+..+..+.+|+++..|++.
T Consensus 141 --~~li~rm----gL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 141 --IALIERM----GLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred --HHHHHHh----CccccccceEEEEEEEEcCCccHHH
Confidence 1122222 1123445667789999999999965
No 297
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.03 E-value=6.1e-10 Score=115.66 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=96.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~- 341 (694)
..+.+.|++||+.|+|||||+++|+...-....+.+ -|.|........
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLF-------------------------------ATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLF-------------------------------ATLDPTLHSAHLP 223 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhh-------------------------------eeccchhhhccCC
Confidence 345678999999999999999999943222222211 133333222222
Q ss_pred CCeEEEEEeCCCccc--------hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCC------c
Q 005478 342 KNYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD------Q 407 (694)
Q Consensus 342 ~~~~v~liDtPGh~~--------f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip------~ 407 (694)
.+..+.|.||-|+.. -+..++..+..+|++|+|+|.+++.. ..|-...+..++.+|++ .
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~a-------e~q~e~Vl~vL~~igv~~~pkl~~ 296 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNA-------EEQRETVLHVLNQIGVPSEPKLQN 296 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccH-------HHHHHHHHHHHHhcCCCcHHHHhH
Confidence 567789999999533 24445666778999999999999863 36777788999999996 2
Q ss_pred EEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 408 iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|=|=||+|..+.- ... .++ ..+++||++|+|+.+
T Consensus 297 mieVdnkiD~e~~~--------------~e~----E~n-~~v~isaltgdgl~e 331 (410)
T KOG0410|consen 297 MIEVDNKIDYEEDE--------------VEE----EKN-LDVGISALTGDGLEE 331 (410)
T ss_pred HHhhcccccccccc--------------Ccc----ccC-CccccccccCccHHH
Confidence 56677888865310 000 011 148999999999976
No 298
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.03 E-value=1.6e-09 Score=93.65 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=69.7
Q ss_pred cceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC---eeeEEEeeeecccccceeccCCceeEEeccccccccccC
Q 005478 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (694)
Q Consensus 497 ~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~---~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG 572 (694)
..|.++|++. .|++ +.|+|.+|.|++|+.+.++|.+ ...+|++|+++++.+++|.+|+.|+|.|++++ ++++|
T Consensus 3 ~~V~~vf~~~~~g~v-ag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~G 79 (84)
T cd03692 3 AEVRAVFKISKVGNI-AGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVG 79 (84)
T ss_pred EEEEEEEECCCCcEE-EEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCC
Confidence 3577889877 7888 8999999999999999999999 57799999999999999999999999999887 89999
Q ss_pred cee
Q 005478 573 GVL 575 (694)
Q Consensus 573 ~VL 575 (694)
|+|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 987
No 299
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.3e-09 Score=98.59 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=98.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE--ecCC
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKN 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~--~~~~ 343 (694)
.++-.|+|..++|||.|+.+++...-.. |. + ..|-+..+.+.+ ...+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfma--------------------------dc-p----htigvefgtriievsgqk 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMA--------------------------DC-P----HTIGVEFGTRIIEVSGQK 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhh--------------------------cC-C----cccceecceeEEEecCcE
Confidence 4678999999999999999998432111 10 0 112223333333 3456
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH----HHHHHcCCCc--EEEEEecccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA----QLIRSFGVDQ--LIVAVNKMDA 417 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l----~ll~~lgip~--iIVVVNK~Dl 417 (694)
..+.||||+|+++|..-+.++.+.+-+++.|.|.+.. .|..|+ .-++.+-.|. ++++.||.|+
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrr-----------stynhlsswl~dar~ltnpnt~i~lignkadl 128 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR-----------STYNHLSSWLTDARNLTNPNTVIFLIGNKADL 128 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh-----------hhhhhHHHHHhhhhccCCCceEEEEecchhhh
Confidence 7789999999999999999999999999999999864 333343 3344444443 5777899998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.......++ +.+++.++-| +.|+..||++|+|++.
T Consensus 129 e~qrdv~ye----eak~faeeng-----l~fle~saktg~nved 163 (215)
T KOG0097|consen 129 ESQRDVTYE----EAKEFAEENG-----LMFLEASAKTGQNVED 163 (215)
T ss_pred hhcccCcHH----HHHHHHhhcC-----eEEEEecccccCcHHH
Confidence 643223333 3344444434 5789999999999976
No 300
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.00 E-value=5e-09 Score=108.82 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=75.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec
Q 005478 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 262 ~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~ 341 (694)
+....++|+++|.+|+|||||+|+|++....... ...+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~------------------------------~~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS------------------------------AFQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC------------------------------CCCCceEEEEEEEEEE
Confidence 3446789999999999999999999964321110 0123455555555566
Q ss_pred CCeEEEEEeCCCccchH------HH----HHhhc--ccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCC---
Q 005478 342 KNYHVVVLDSPGHKDFV------PN----MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV--- 405 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~------~~----~i~~~--~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgi--- 405 (694)
.+..++||||||..+.. .. +...+ ...|++++|...+... ........+..+.. +|.
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r-------~~~~d~~llk~I~e~fG~~i~ 149 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR-------RDYLDLPLLRAITDSFGPSIW 149 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhChhhH
Confidence 78899999999976541 11 11122 2478888886554321 11233344444443 553
Q ss_pred CcEEEEEecccccc
Q 005478 406 DQLIVAVNKMDAVQ 419 (694)
Q Consensus 406 p~iIVVVNK~Dlv~ 419 (694)
.++|||+||+|...
T Consensus 150 ~~~ivV~T~~d~~~ 163 (249)
T cd01853 150 RNAIVVLTHAASSP 163 (249)
T ss_pred hCEEEEEeCCccCC
Confidence 35999999999874
No 301
>PRK13768 GTPase; Provisional
Probab=98.99 E-value=2.5e-09 Score=111.48 Aligned_cols=105 Identities=20% Similarity=0.324 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCccchH------HHHHhhccc--CCEEEEEEecCCCccccccccchhHHHHHHHHHH-----HcCCCcEE
Q 005478 343 NYHVVVLDSPGHKDFV------PNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-----SFGVDQLI 409 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~------~~~i~~~~~--aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-----~lgip~iI 409 (694)
+..+.||||||+.++. +.+...+.. ++++++|+|+..+. .....+...++. ..++| +|
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~--------~~~d~~~~~~l~~~~~~~~~~~-~i 166 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAK--------TPSDFVSLLLLALSVQLRLGLP-QI 166 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhC--------CHHHHHHHHHHHHHHHHHcCCC-EE
Confidence 3479999999976642 223333433 89999999997653 123322222222 56778 89
Q ss_pred EEEecccccccchhhHhHHHHhhc------------------------cchhcccccCCCceEEEeecccCCCccc
Q 005478 410 VAVNKMDAVQYSKDRFDSIKVQLG------------------------TFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 410 VVVNK~Dlv~~~~e~~~~i~~~l~------------------------~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|+||+|+....+ .+.+.+.+. +.++..+ ...+++++|+++++|+.+
T Consensus 167 ~v~nK~D~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~~gl~~ 237 (253)
T PRK13768 167 PVLNKADLLSEEE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTGEGFDE 237 (253)
T ss_pred EEEEhHhhcCchh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCCcCHHH
Confidence 9999999985322 222222121 1222223 234789999999999976
No 302
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.98 E-value=3.9e-09 Score=116.54 Aligned_cols=81 Identities=27% Similarity=0.326 Sum_probs=54.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE--EEE-----
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYF----- 339 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~--~~~----- 339 (694)
++|+|+|.+|+|||||+++|+.....+... ++.|++... ..+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y-------------------------------~f~t~~p~~g~~~v~~~~~ 50 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANY-------------------------------PFTTIDPNVGVAYVRVECP 50 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCC-------------------------------CCcceeeeeeeeeeccCCc
Confidence 579999999999999999999643222111 222322211 111
Q ss_pred -----------------ecCCeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecC
Q 005478 340 -----------------DSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (694)
Q Consensus 340 -----------------~~~~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~ 378 (694)
......+.|+||||..+ .....+..++.+|++++|||+.
T Consensus 51 ~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 51 CKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 01225688999999532 4446677789999999999997
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.98 E-value=1.3e-09 Score=117.12 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=61.3
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
..++.++|+||+|...-... .+..+|++|+|++...|. ....+. ...+.+. -|+|+||+|+.+.
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd----------~iq~~k--~gi~E~a-DIiVVNKaDl~~~ 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGD----------ELQGIK--KGIMELA-DLIVINKADGDNK 209 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchH----------HHHHHH--hhhhhhh-heEEeehhcccch
Confidence 35788999999997632211 355699999998744331 111111 1122333 2789999998852
Q ss_pred chhhHhHHHHhhccchhccc--ccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g--~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+....++...+.... ......+++++||++|.|+.+
T Consensus 210 --~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 210 --TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred --hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 233344445554443211 001124789999999999977
No 304
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.97 E-value=7.4e-09 Score=106.09 Aligned_cols=151 Identities=18% Similarity=0.319 Sum_probs=94.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-cCCeEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYHV 346 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~-~~~~~v 346 (694)
||+++|+.++||||+.+.+.+....- +-+.-|.|+++....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~------------------------------dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR------------------------------DTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG------------------------------GGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch------------------------------hccccCCcCCceEEEEecCCCcEE
Confidence 68999999999999999998432211 01124567776666665 355699
Q ss_pred EEEeCCCccchHHHH-----HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 005478 347 VVLDSPGHKDFVPNM-----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 347 ~liDtPGh~~f~~~~-----i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~ 419 (694)
.|||+||+..|..+. ..-++.++++|+|+|+....+...+ ......+..+... +++ +.|.+.|||++.
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l----~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~ 125 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDL----AYLSDCIEALRQYSPNIK-VFVFIHKMDLLS 125 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHH----HHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHH----HHHHHHHHHHHHhCCCCe-EEEEEeecccCC
Confidence 999999998887663 3346789999999999844333222 2334444444443 344 899999999985
Q ss_pred c--chhhHhHHHHhhccchhcccccCCCceEEEeeccc
Q 005478 420 Y--SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (694)
Q Consensus 420 ~--~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~ 455 (694)
. ..+.++.+.+.+...+...++. .+.++.+|...
T Consensus 126 ~~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D 161 (232)
T PF04670_consen 126 EDEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcC
Confidence 2 2344666777777777766653 47788888765
No 305
>PTZ00099 rab6; Provisional
Probab=98.94 E-value=5.5e-09 Score=102.97 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=69.6
Q ss_pred EecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccc
Q 005478 339 FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMD 416 (694)
Q Consensus 339 ~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~D 416 (694)
+......+.||||||+++|...+...+..+|++|||+|++... .| .....++..++... ++| +|+|.||+|
T Consensus 24 ~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~---sf---~~~~~w~~~i~~~~~~~~p-iilVgNK~D 96 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ---SF---ENTTKWIQDILNERGKDVI-IALVGNKTD 96 (176)
T ss_pred ECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCe-EEEEEECcc
Confidence 3344578899999999999988888899999999999998742 11 11122222333332 345 899999999
Q ss_pred ccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 417 lv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+........++. ..+....+ ..++++||++|.|+.+
T Consensus 97 L~~~~~v~~~e~----~~~~~~~~-----~~~~e~SAk~g~nV~~ 132 (176)
T PTZ00099 97 LGDLRKVTYEEG----MQKAQEYN-----TMFHETSAKAGHNIKV 132 (176)
T ss_pred cccccCCCHHHH----HHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 864211111111 12222222 3679999999999977
No 306
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.94 E-value=1.1e-09 Score=103.35 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh-CccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLL-GRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~-g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++.++|..-+|||+|+..++... ..+.+... |--.|+. -.|.++| ...
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptv------------gvdffar-----lie~~pg------------~ri 58 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV------------GVDFFAR-----LIELRPG------------YRI 58 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc------------chHHHHH-----HHhcCCC------------cEE
Confidence 4689999999999999999998321 11111110 0000111 1122233 234
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCc---EEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ---LIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~---iIVVVNK~Dlv~~~ 421 (694)
.+.||||+|+++|..-+.++.+++=++++|.|.+... .|.. .-.+.......++-|. +.+|..|.|+....
T Consensus 59 klqlwdtagqerfrsitksyyrnsvgvllvyditnr~---sfeh---v~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR 132 (213)
T KOG0091|consen 59 KLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRE---SFEH---VENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR 132 (213)
T ss_pred EEEEeeccchHHHHHHHHHHhhcccceEEEEeccchh---hHHH---HHHHHHHHHHhcCCCCeeEEEEeccccchhhhc
Confidence 6899999999999999999999999999999988631 1111 1112222233344332 46788999997422
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
+- ..++-..+.+.+|+ .||.+||++|.|+++.
T Consensus 133 qV----t~EEaEklAa~hgM-----~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 133 QV----TAEEAEKLAASHGM-----AFVETSAKNGCNVEEA 164 (213)
T ss_pred cc----cHHHHHHHHHhcCc-----eEEEecccCCCcHHHH
Confidence 22 23344455566664 7899999999999873
No 307
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=102.49 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=96.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.-.++|+++|.--+|||+|+=+..... +..+.+..+.. + +.. + + ..++...
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~Enk--Fn~kHlsTlQA--------S----F~~--------k--k-----~n~ed~r 61 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENK--FNCKHLSTLQA--------S----FQN--------K--K-----VNVEDCR 61 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhh--cchhhHHHHHH--------H----Hhh--------c--c-----cccccce
Confidence 346889999999999999998887321 11111110000 0 000 0 1 1122345
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCC-cEEEEEecccccccch
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAVQYSK 422 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip-~iIVVVNK~Dlv~~~~ 422 (694)
..+.||||+|+++|-..---+++.++++|||+|.++. ..|.+ .--+.+.+-..+|.. -++||.||+|+.+
T Consensus 62 a~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr---dSFqK---VKnWV~Elr~mlGnei~l~IVGNKiDLEe--- 132 (218)
T KOG0088|consen 62 ADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR---DSFQK---VKNWVLELRTMLGNEIELLIVGNKIDLEE--- 132 (218)
T ss_pred eeeeeeeccchHhhhccCceEEeCCCceEEEEeccch---HHHHH---HHHHHHHHHHHhCCeeEEEEecCcccHHH---
Confidence 6789999999999987776788999999999999863 23322 223344444445542 2789999999863
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
++ .-..++...+.+..|. .++.+||+.+.||.+
T Consensus 133 eR-~Vt~qeAe~YAesvGA-----~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 133 ER-QVTRQEAEAYAESVGA-----LYMETSAKDNVGISE 165 (218)
T ss_pred hh-hhhHHHHHHHHHhhch-----hheecccccccCHHH
Confidence 22 1223333344444442 468999999999987
No 308
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.91 E-value=3.1e-09 Score=115.29 Aligned_cols=147 Identities=20% Similarity=0.282 Sum_probs=81.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCe---EEEEEEEEEec
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI---TMTVAVAYFDS 341 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~Gi---Ti~~~~~~~~~ 341 (694)
..++|||+|.+|+|||||||+|.+-... .+.....|+ |.... .|...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~-----------------------------d~~aA~tGv~etT~~~~-~Y~~p 83 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHE-----------------------------DEGAAPTGVVETTMEPT-PYPHP 83 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TT-----------------------------STTS--SSSHSCCTS-E-EEE-S
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCC-----------------------------CcCcCCCCCCcCCCCCe-eCCCC
Confidence 5689999999999999999999742100 000001222 22222 22222
Q ss_pred CCeEEEEEeCCCcc-------chHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~-------~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
+-.+++|||.||.. +|...+ .+...|+.|+|.+.. +.......+..+..+|.+ +.+|-||
T Consensus 84 ~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~r----------f~~ndv~La~~i~~~gK~-fyfVRTK 150 (376)
T PF05049_consen 84 KFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSER----------FTENDVQLAKEIQRMGKK-FYFVRTK 150 (376)
T ss_dssp S-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS------------HHHHHHHHHHHHTT-E-EEEEE--
T ss_pred CCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCC----------CchhhHHHHHHHHHcCCc-EEEEEec
Confidence 33469999999943 244333 467789877776644 234556666778889988 9999999
Q ss_pred ccc-c---------ccchh-hHhHHHHhhccchhcccccCCCceEEEeecccC
Q 005478 415 MDA-V---------QYSKD-RFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (694)
Q Consensus 415 ~Dl-v---------~~~~e-~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G 456 (694)
+|. + .++++ .++++++...+-|+..|... .+++.+|...-
T Consensus 151 vD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~--P~VFLVS~~dl 201 (376)
T PF05049_consen 151 VDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSE--PQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS----EEEB-TTTT
T ss_pred ccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCc--CceEEEeCCCc
Confidence 996 1 12222 25677777777777777754 46688998753
No 309
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.90 E-value=7.1e-09 Score=103.90 Aligned_cols=152 Identities=21% Similarity=0.165 Sum_probs=95.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCe-EEEEEEEEEecCC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI-TMTVAVAYFDSKN 343 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~Gi-Ti~~~~~~~~~~~ 343 (694)
...+|+++|..|+|||+|+-++++..-.- +..+-+ +.......++...
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~-------------------------------~y~ptied~y~k~~~v~~~~ 50 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVE-------------------------------DYDPTIEDSYRKELTVDGEV 50 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccc-------------------------------ccCCCccccceEEEEECCEE
Confidence 35689999999999999999988431110 000100 1111122233345
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEecccccccch
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVVNK~Dlv~~~~ 422 (694)
..+.|+||+|..+|......++..+|+.++|++.+... .|+.. .+.++++...+. -.+| +|+|.||+|+.....
T Consensus 51 ~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~---SF~~~-~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~ 125 (196)
T KOG0395|consen 51 CMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRS---SFEEA-KQLREQILRVKGRDDVP-IILVGNKCDLERERQ 125 (196)
T ss_pred EEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHH---HHHHH-HHHHHHHHHhhCcCCCC-EEEEEEcccchhccc
Confidence 66789999999999998888999999999999998631 22211 233333311222 2346 999999999974211
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
... ++-..+...++ ++|+.+||+...|+.+
T Consensus 126 V~~----eeg~~la~~~~-----~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 126 VSE----EEGKALARSWG-----CAFIETSAKLNYNVDE 155 (196)
T ss_pred cCH----HHHHHHHHhcC-----CcEEEeeccCCcCHHH
Confidence 111 12222233333 4689999999999977
No 310
>PTZ00258 GTP-binding protein; Provisional
Probab=98.90 E-value=2.1e-08 Score=109.96 Aligned_cols=83 Identities=20% Similarity=0.120 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-- 342 (694)
..++|+|+|.||+|||||+|+|++....+.. -+++|++.....+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n-------------------------------~pftTi~p~~g~v~~~d~ 68 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAEN-------------------------------FPFCTIDPNTARVNVPDE 68 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccC-------------------------------CCCCcccceEEEEecccc
Confidence 4578999999999999999999864332211 1555655444444332
Q ss_pred ---------------CeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecC
Q 005478 343 ---------------NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (694)
Q Consensus 343 ---------------~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~ 378 (694)
..++.|+||||... +....+..++.+|++|+|||+.
T Consensus 69 r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 69 RFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999432 4456677889999999999985
No 311
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.90 E-value=7.4e-09 Score=92.53 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=75.2
Q ss_pred CCCCcccceEeEEecC---------CCeEeeEEEEeeeeecCCCEEEEecC-------C-----eeeEEEeeeecccccc
Q 005478 491 FSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPS-------G-----EVGTVHSIERDSQSCS 549 (694)
Q Consensus 491 ~~~pl~~~I~~v~~~~---------~G~V~v~GrV~sG~L~~Gd~v~i~P~-------~-----~~~~VksI~~~~~~v~ 549 (694)
.++|++|+|.++|.++ .|.| +.|+|.+|.|++||+|.|.|. + ...+|.||+..+..++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgV-igGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGV-AGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeE-EEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCcccc
Confidence 4689999999999875 5788 899999999999999999986 2 2468999999999999
Q ss_pred eeccCCceeEE---eccccccccccCceeecC
Q 005478 550 VARAGDNIAVS---LQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 550 ~A~aGd~V~l~---L~gid~~~i~rG~VL~~~ 578 (694)
+|.||..|++. ..++...+..+|+|++.+
T Consensus 81 ~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 81 EAVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EEeCCCeEEEccccCccccccceeeEEEeecC
Confidence 99999999993 346777788999999875
No 312
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.89 E-value=8.6e-09 Score=95.14 Aligned_cols=151 Identities=21% Similarity=0.283 Sum_probs=99.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-C
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-~ 342 (694)
.+.++|.++|--||||||++.+|...... ..-+..|..+ ..++. .
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~------------------------------hltpT~GFn~----k~v~~~g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR------------------------------HLTPTNGFNT----KKVEYDG 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh------------------------------hccccCCcce----EEEeecC
Confidence 45689999999999999999999843211 0111133222 22333 3
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVVNK~Dlv~ 419 (694)
.+++++||..|++....-+..++...|.+|+|||+.+.- .|+ ....+...++. ...+| +.+..||-|++-
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~k---rfe---E~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEK---RFE---EISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchH---hHH---HHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 489999999999998888889999999999999976532 221 22223333333 34567 888899999874
Q ss_pred cchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 420 ~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....+++...+. -.++....+.+-.+||++++|+..
T Consensus 134 --aa~~eeia~kln----l~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 134 --AAKVEEIALKLN----LAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred --hcchHHHHHhcc----hhhhhhceEEeeeCccccccCccC
Confidence 233333332222 223444556778899999999865
No 313
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.88 E-value=3.9e-09 Score=106.60 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=56.9
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
+..+.|++|.|..... .......+..+.|+|+..+.. .+ +.....++.+ .++++||+|+.+...
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--------~~----~~~~~~~~~a-~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--------KP----LKYPGMFKEA-DLIVINKADLAEAVG 165 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--------hh----hhhHhHHhhC-CEEEEEHHHccccch
Confidence 4578999999921110 111223566778999876521 11 1112234556 689999999985322
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.....+.+.+..+. +..+++++||++|+|+.+
T Consensus 166 ~~~~~~~~~l~~~~-------~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 166 FDVEKMKADAKKIN-------PEAEIILMSLKTGEGLDE 197 (207)
T ss_pred hhHHHHHHHHHHhC-------CCCCEEEEECCCCCCHHH
Confidence 23333444433321 236789999999999976
No 314
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.88 E-value=2e-08 Score=106.47 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=72.0
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
++....++|+++|.+|+|||||+|+|++....+.+.. .+.|.........
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f------------------------------~s~t~~~~~~~~~ 82 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF------------------------------QSEGLRPMMVSRT 82 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC------------------------------CCcceeEEEEEEE
Confidence 3445778999999999999999999996533221110 1111111112233
Q ss_pred cCCeEEEEEeCCCccchH--HH-HHhhc------ccCCEEEEEEecCCCccccccccchhHHHHHHHHHH-HcCC---Cc
Q 005478 341 SKNYHVVVLDSPGHKDFV--PN-MISGA------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGV---DQ 407 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~--~~-~i~~~------~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lgi---p~ 407 (694)
..+..++||||||..+.. .. .+..+ ..+|++|+|...+..- .....+..+..+. .+|- .+
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-------~~~~DkqlLk~Iqe~FG~~iw~~ 155 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-------VDTLDGQVIRAITDSFGKDIWRK 155 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-------CCHHHHHHHHHHHHHhhhhhhcc
Confidence 478899999999976531 11 11111 2589999995543211 1123333443333 2342 45
Q ss_pred EEEEEecccccc
Q 005478 408 LIVAVNKMDAVQ 419 (694)
Q Consensus 408 iIVVVNK~Dlv~ 419 (694)
+|||+|+.|...
T Consensus 156 ~IVVfTh~d~~~ 167 (313)
T TIGR00991 156 SLVVLTHAQFSP 167 (313)
T ss_pred EEEEEECCccCC
Confidence 899999999774
No 315
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4.9e-09 Score=103.47 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
..|.++|..|+|||+|+-+|++.... ..-+.+......+..+...+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----------------------------------~TvtSiepn~a~~r~gs~~~ 84 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----------------------------------GTVTSIEPNEATYRLGSENV 84 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----------------------------------CeeeeeccceeeEeecCcce
Confidence 45999999999999999999843110 01112333333444566669
Q ss_pred EEEeCCCccchHHHHHhhcc---cCCEEEEEEecCCCccccccccchhHHHHHH-HHH-HH---cCCCcEEEEEeccccc
Q 005478 347 VVLDSPGHKDFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLI-RS---FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~---~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll-~~---lgip~iIVVVNK~Dlv 418 (694)
.|||.|||.+........+. .+-++|+|||+..- .... ....|.+ .++ .. -+.++++++.||.|+.
T Consensus 85 ~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f--~k~v----rdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 85 TLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF--LKNV----RDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc--chhh----HHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99999999999888887776 79999999998752 1111 2222222 111 12 2335599999999987
Q ss_pred c
Q 005478 419 Q 419 (694)
Q Consensus 419 ~ 419 (694)
-
T Consensus 159 t 159 (238)
T KOG0090|consen 159 T 159 (238)
T ss_pred h
Confidence 4
No 316
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.5e-09 Score=100.30 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=71.8
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVVNK~Dlv~~ 420 (694)
.++.||||+|+++|...+..-.+.|=+.+|+.|-+.. ..| -.++..+..++. ..-|.+|++.||.|+.+.
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e---qSF----LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE---QSF----LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch---HHH----HHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 5688999999999999998888999999999998752 111 123333333332 234789999999998742
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. .--..+..++..+.| +|++.+||-+|.|+.+
T Consensus 140 R----~Vs~~qa~~La~kyg-----lPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 140 R----VVSEDQAAALADKYG-----LPYFETSACTGTNVEK 171 (219)
T ss_pred h----hhhHHHHHHHHHHhC-----CCeeeeccccCcCHHH
Confidence 1 111233344444555 5899999999999976
No 317
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.6e-08 Score=91.91 Aligned_cols=149 Identities=20% Similarity=0.199 Sum_probs=97.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
..+|.++|-.++||||++-.|.......+ --|+-.....+.+.+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~----------------------------------ipTvGFnvetVtykN~k 62 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT----------------------------------IPTVGFNVETVTYKNVK 62 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc----------------------------------ccccceeEEEEEeeeeE
Confidence 46799999999999999988863211100 00222223345567889
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH--Hc-CCCcEEEEEecccccccch
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SF-GVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~--~l-gip~iIVVVNK~Dlv~~~~ 422 (694)
|++||..|+....+.+..++....++|+|+|+.... .+...-.|.-.++. +| .++ ++|..||-|+.+..
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d------r~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~- 134 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD------RIEEARNELHRIINDREMRDAI-ILILANKQDLPDAM- 134 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchh------hHHHHHHHHHHHhCCHhhhcce-EEEEecCccccccc-
Confidence 999999999999999999999999999999987542 11111112212221 22 234 78899999998532
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..++|. .+++--.+.....-+.|++|.+|+|+.+
T Consensus 135 -~pqei~----d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 -KPQEIQ----DKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred -CHHHHH----HHhccccccCCccEeeccccccchhHHH
Confidence 233333 3332222444566778999999999876
No 318
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.81 E-value=8.3e-09 Score=93.62 Aligned_cols=130 Identities=25% Similarity=0.311 Sum_probs=86.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
+|+++|.+++|||||++.|.+.... ..-|.. +++++ =-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-----------------------------------ykKTQA-----ve~~d--~~ 40 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-----------------------------------YKKTQA-----VEFND--KG 40 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-----------------------------------hcccce-----eeccC--cc
Confidence 6999999999999999999743110 001111 11111 12
Q ss_pred EEeCCC----ccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchh
Q 005478 348 VLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 348 liDtPG----h~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e 423 (694)
.||||| |..+-...+..+..+|++++|-.|+++. ..|. ..++ ..+.+++|=||+|.|+.+ ..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~--s~f~---------p~f~-~~~~k~vIgvVTK~DLae--d~ 106 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE--SRFP---------PGFL-DIGVKKVIGVVTKADLAE--DA 106 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc--ccCC---------cccc-cccccceEEEEecccccc--hH
Confidence 589999 6777777777888899999999998763 1111 1122 334455899999999984 33
Q ss_pred hHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+.... +.+|.+.|- -+++.+|+.+..|+.+
T Consensus 107 dI~~~----~~~L~eaGa----~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 107 DISLV----KRWLREAGA----EPIFETSAVDNQGVEE 136 (148)
T ss_pred hHHHH----HHHHHHcCC----cceEEEeccCcccHHH
Confidence 33333 344444553 3679999999999976
No 319
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.78 E-value=1.1e-08 Score=99.19 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCccc----hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 342 KNYHVVVLDSPGHKD----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 342 ~~~~v~liDtPGh~~----f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
....+.|+||||... ....+..++..+|++|+|+++.... .....+.+........+++|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~--------~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDL--------TESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTG--------GGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCccc--------chHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 456799999999543 2244556678899999999999863 22223333333333344489999995
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.77 E-value=4e-08 Score=101.29 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=80.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh------Cccchhhhh-hHHHHHhh-------hCCCccchhhccccchh------
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLL------GRITQKQMH-KYEKEAKL-------QGKGSFAYAWALDESAE------ 324 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~------g~i~~~~~~-~~~~~~~~-------~g~gs~~~~~~~d~~~~------ 324 (694)
..+.|+++|+.++|||||+++|++.. |.++...+. .+.+.... .++.-..+.-+.+.-..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999763 222221110 00000000 00000000000000000
Q ss_pred hhccCeEEEEEEEEEec-CCeEEEEEeCCCccc------------hH-HHHHhhccc-CCEEEEEEecCCCccccccccc
Q 005478 325 ERERGITMTVAVAYFDS-KNYHVVVLDSPGHKD------------FV-PNMISGATQ-SDAAILVIDASVGSFEVGMNTA 389 (694)
Q Consensus 325 Er~~GiTi~~~~~~~~~-~~~~v~liDtPGh~~------------f~-~~~i~~~~~-aD~aILVVDa~~g~~e~~~~~~ 389 (694)
....+++-++-...+.. .-..++|+||||... .+ ..+..++.. .+++++|+||..+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~-------- 176 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL-------- 176 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC--------
Confidence 01123333333333332 346799999999642 12 223445563 56999999998764
Q ss_pred hhHH-HHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 390 KGLT-REHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 390 ~~qt-~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
..+. .+.+..+...+.+ +|+|+||+|..+..
T Consensus 177 ~~~d~l~ia~~ld~~~~r-ti~ViTK~D~~~~~ 208 (240)
T smart00053 177 ANSDALKLAKEVDPQGER-TIGVITKLDLMDEG 208 (240)
T ss_pred CchhHHHHHHHHHHcCCc-EEEEEECCCCCCcc
Confidence 2333 5667777778877 89999999998643
No 321
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.77 E-value=8.9e-08 Score=97.21 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=79.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|+++|..|+||||++|.|++....-.. .....+|...........+..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-----------------------------~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-----------------------------SSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec-----------------------------cccCCcccccceeeeeecceEE
Confidence 58999999999999999999954321100 0112344444445557789999
Q ss_pred EEEeCCCccc-------hHHHHHh----hcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH-HcCC---CcEEEE
Q 005478 347 VVLDSPGHKD-------FVPNMIS----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGV---DQLIVA 411 (694)
Q Consensus 347 ~liDtPGh~~-------f~~~~i~----~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lgi---p~iIVV 411 (694)
++|||||.-+ ....+.. .....+++|||+.+.. +....+..+..+. .+|- +++|||
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r---------~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR---------FTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc---------chHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 9999999433 2223332 2345899999999873 1234444554443 4553 578999
Q ss_pred EecccccccchhhHhHHH-----Hhhccchhccc
Q 005478 412 VNKMDAVQYSKDRFDSIK-----VQLGTFLRSCG 440 (694)
Q Consensus 412 VNK~Dlv~~~~e~~~~i~-----~~l~~~l~~~g 440 (694)
+|..|...... +++.. ..+..+++.++
T Consensus 123 fT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 123 FTHADELEDDS--LEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp EEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccccc--HHHHHhccCchhHhHHhhhcC
Confidence 99999775322 32222 24666776665
No 322
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.75 E-value=1.1e-07 Score=103.21 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=80.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccC---eEEEEEE---EE
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG---ITMTVAV---AY 338 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~G---iTi~~~~---~~ 338 (694)
..+-|+|+|++++|||||+++|+.......-.. .+.++ ...|.... ...| +|.+..+ ..
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~--~~~k~------------Ra~DELpq-s~~GktItTTePkfvP~kA 80 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISN--EYDKE------------RAQDELPQ-SAAGKTIMTTEPKFVPNEA 80 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccc--hhHHh------------HHHhccCc-CCCCCCcccCCCccccCcc
Confidence 457899999999999999999997633221110 01111 11121111 1256 4444444 22
Q ss_pred Ee-----cCCeEEEEEeCCCccc-------------------------hHHH----HHhhcc-cCCEEEEEE-ecCCCcc
Q 005478 339 FD-----SKNYHVVVLDSPGHKD-------------------------FVPN----MISGAT-QSDAAILVI-DASVGSF 382 (694)
Q Consensus 339 ~~-----~~~~~v~liDtPGh~~-------------------------f~~~----~i~~~~-~aD~aILVV-Da~~g~~ 382 (694)
++ .-...+.|+||+|..+ |... +..-+. .+|.+|+|. |++-+..
T Consensus 81 vEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI 160 (492)
T TIGR02836 81 VEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDI 160 (492)
T ss_pred eEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccc
Confidence 22 2236899999999332 1111 223344 699999999 8752211
Q ss_pred ccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005478 383 EVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (694)
Q Consensus 383 e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dl 417 (694)
. .........+.+..++..++| +|+++||.|-
T Consensus 161 ~--Re~y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 161 P--REDYVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred c--cccchHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 1 111234567788899999999 9999999993
No 323
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.71 E-value=8.2e-08 Score=80.34 Aligned_cols=79 Identities=35% Similarity=0.513 Sum_probs=69.7
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEec--CCeeeEEEeeeecccccceeccCCceeEEecccccccccc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLP--SGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P--~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~r 571 (694)
++++|.+++..+ .|.+ ++|+|.+|+|++||.+.+.| .....+|++|+....+++.+.||+.+++.+...+ +++.
T Consensus 1 ~~~~v~~~~~~~~~g~v-~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~ 77 (83)
T cd01342 1 LRALVFKVFKDKGRGTV-ATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKI 77 (83)
T ss_pred CeeEEEEEEEeCCceEE-EEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCC
Confidence 467888999887 7887 89999999999999999999 7778999999999999999999999999876433 6889
Q ss_pred Cceee
Q 005478 572 GGVLC 576 (694)
Q Consensus 572 G~VL~ 576 (694)
|++|+
T Consensus 78 g~~l~ 82 (83)
T cd01342 78 GDTLT 82 (83)
T ss_pred CCEec
Confidence 99886
No 324
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.70 E-value=4.4e-08 Score=98.51 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=58.2
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
+..++||+|.|.. ...... ...+|.+|+|+|+..+. ..... ....+.... ++++||+|+.+...
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~---------~~~~~---~~~qi~~ad-~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGD---------KIPRK---GGPGITRSD-LLVINKIDLAPMVG 154 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhh---------hhhhh---hHhHhhhcc-EEEEEhhhcccccc
Confidence 4578899999931 111111 11268899999998753 11111 112222222 78999999985323
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...+.+.+.++.+- +..+++++||++|+|+.+
T Consensus 155 ~~~~~~~~~~~~~~-------~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 155 ADLGVMERDAKKMR-------GEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred ccHHHHHHHHHHhC-------CCCCEEEEECCCCCCHHH
Confidence 44444555555541 246889999999999976
No 325
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.69 E-value=1.8e-07 Score=100.09 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=58.2
Q ss_pred cCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
..++.++|+||||...- ....+..+|.+++|.....+. ...... -..++.+ .++|+||+|+...
T Consensus 124 ~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~----------el~~~~--~~l~~~~-~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGD----------DLQGIK--AGLMEIA-DIYVVNKADGEGA 187 (300)
T ss_pred hCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccH----------HHHHHH--HHHhhhc-cEEEEEcccccch
Confidence 35789999999996522 223456689998886554321 111111 1124666 5899999999853
Q ss_pred chhhH--hHHHHhhccchhc-ccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRF--DSIKVQLGTFLRS-CGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~--~~i~~~l~~~l~~-~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..... ..+...+..+.+. .++ ..+++++||++|+|+.+
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~~~~---~~~v~~iSA~~g~Gi~~ 228 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRREDGW---RPPVLTTSAVEGRGIDE 228 (300)
T ss_pred hHHHHHHHHHHHHHhhccccccCC---CCCEEEEEccCCCCHHH
Confidence 21111 0011112222221 122 23689999999999976
No 326
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1e-07 Score=90.51 Aligned_cols=114 Identities=18% Similarity=0.084 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+.-+++++|--|||||||+..|-.+.-.... =|.+.....+...+.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhv----------------------------------PTlHPTSE~l~Ig~m 64 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV----------------------------------PTLHPTSEELSIGGM 64 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccC----------------------------------CCcCCChHHheecCc
Confidence 4567999999999999999999732111100 133334444556788
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVVNK~Dlv~~ 420 (694)
.++-+|..||..-..-+..++..+|+++++|||.+.. .| ...++++..+.. ..+| +++..||+|....
T Consensus 65 ~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e---r~----~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 65 TFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE---RF----AESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred eEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH---Hh----HHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 8999999999998888899999999999999998642 11 233444433332 3567 8999999998753
No 327
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.65 E-value=8.1e-08 Score=80.56 Aligned_cols=68 Identities=32% Similarity=0.413 Sum_probs=60.7
Q ss_pred CeEeeEEEEeeeeecCCCEEEEecC--Cee---eEEEeeeecccccceeccCCceeEEeccccccc-cccCceee
Q 005478 508 GQVSACGKLEAGALRSGLKVLVLPS--GEV---GTVHSIERDSQSCSVARAGDNIAVSLQGIDVSR-VMSGGVLC 576 (694)
Q Consensus 508 G~V~v~GrV~sG~L~~Gd~v~i~P~--~~~---~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~-i~rG~VL~ 576 (694)
|++ ++|||++|+|++||+|+++|. +.. .+|++|+.++.....+.+|+.+++.+...+..+ +++||+||
T Consensus 1 G~v-~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRV-ATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEE-EEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEE-EEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 567 899999999999999999773 244 999999999999999999999999998888888 89999996
No 328
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.5e-08 Score=92.42 Aligned_cols=150 Identities=23% Similarity=0.236 Sum_probs=95.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+..+|.++|--|+||+|++=+|-- +.++... + |+......+.+++.
T Consensus 17 ~e~rililgldGaGkttIlyrlqv--gevvttk------------------------------P--tigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQV--GEVVTTK------------------------------P--TIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEccc--CcccccC------------------------------C--CCCcCccccccccc
Confidence 456799999999999998766641 1111000 1 23333344556888
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVVNK~Dlv~~~ 421 (694)
.+.+||..|+....+-+..++...|.+|+|||..+... + ...-.+...++. ..+. .++|+.||+|....
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr---i---s~a~~el~~mL~E~eLq~a-~llv~anKqD~~~~- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR---I---SIAGVELYSMLQEEELQHA-KLLVFANKQDYSGA- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh---h---hhhHHHHHHHhccHhhcCc-eEEEEeccccchhh-
Confidence 99999999999999999999999999999999886421 1 112223223332 2333 38999999997531
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ...++...|.-..++...+.+|..||.+|+|+++
T Consensus 135 ~-----t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 135 L-----TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred h-----hHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 1 1222222221112233457889999999999976
No 329
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.63 E-value=1e-08 Score=93.51 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=70.9
Q ss_pred EecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecc
Q 005478 339 FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKM 415 (694)
Q Consensus 339 ~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVVNK~ 415 (694)
++.....+++|||+|+++|..-+..+.+.||+.+||.|.... +.|+.. +..+..++.. .+. +.++.||+
T Consensus 42 ~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiank---asfdn~----~~wlsei~ey~k~~v~-l~llgnk~ 113 (192)
T KOG0083|consen 42 MDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANK---ASFDNC----QAWLSEIHEYAKEAVA-LMLLGNKC 113 (192)
T ss_pred cCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccc---hhHHHH----HHHHHHHHHHHHhhHh-Hhhhcccc
Confidence 344567899999999999999999999999999999998753 334332 2223233322 233 67889999
Q ss_pred cccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 416 Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
|+....... .++-..+.+.. .+||+.+||++|.|++.
T Consensus 114 d~a~er~v~----~ddg~kla~~y-----~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 114 DLAHERAVK----RDDGEKLAEAY-----GIPFMETSAKTGFNVDL 150 (192)
T ss_pred ccchhhccc----cchHHHHHHHH-----CCCceeccccccccHhH
Confidence 996411111 11112222233 36899999999999965
No 330
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=97.00 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...+.++++|..|+|||+|++.|+....... .++ ...|-|..+.... -+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~-------------t~k---------------~K~g~Tq~in~f~---v~ 182 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIAD-------------TSK---------------SKNGKTQAINHFH---VG 182 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhh-------------hcC---------------CCCccceeeeeee---cc
Confidence 3567899999999999999999985422110 000 1355565544333 35
Q ss_pred eEEEEEeCCC----------ccchHHHHHhhc---ccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEE
Q 005478 344 YHVVVLDSPG----------HKDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (694)
Q Consensus 344 ~~v~liDtPG----------h~~f~~~~i~~~---~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 410 (694)
..+.++|.|| -.++.+.+..++ .+-=.+.|++|++.++ +..+...+.++.+.++| +.+
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i--------~~~D~~~i~~~ge~~VP-~t~ 253 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI--------QPTDNPEIAWLGENNVP-MTS 253 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC--------CCCChHHHHHHhhcCCC-eEE
Confidence 6799999999 123444444443 2345678889999875 45677888999999999 899
Q ss_pred EEecccccccch----hhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 411 AVNKMDAVQYSK----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 411 VVNK~Dlv~~~~----e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
|+||||+...-. .....++..+..+... +-.-..||+.+|+.++.|+.++
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~--~f~~~~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG--VFLVDLPWIYVSSVTSLGRDLL 307 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhcccc--ceeccCCceeeecccccCceee
Confidence 999999863111 0111122222222211 1123467899999999999764
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.57 E-value=9.1e-08 Score=100.54 Aligned_cols=80 Identities=21% Similarity=0.160 Sum_probs=55.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC-----
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN----- 343 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~----- 343 (694)
|+|+|.+|+|||||+++|++....+.. -+++|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n-------------------------------~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN-------------------------------YPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc-------------------------------ccccchhceeeeEEeccchhhh
Confidence 589999999999999999965332211 14455544433333222
Q ss_pred ------------eEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCC
Q 005478 344 ------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (694)
Q Consensus 344 ------------~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~ 379 (694)
..+.|+|+||..+ +....+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2599999999432 44556777889999999999853
No 332
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.57 E-value=2e-08 Score=96.05 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=95.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
...++++|+|.-++||||++.+.+. |..+...- .+ -|+........+..++
T Consensus 18 e~aiK~vivGng~VGKssmiqryCk--gifTkdyk------------kt---------------Igvdflerqi~v~~Ed 68 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKDYK------------KT---------------IGVDFLERQIKVLIED 68 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhc--cccccccc------------cc---------------cchhhhhHHHHhhHHH
Confidence 4678999999999999999999982 22221110 00 0111000011122355
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHHHc-CCCcEEEEEecccccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSF-GVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~l-gip~iIVVVNK~Dlv~~~ 421 (694)
.++.+|||+|+++|-.-+-.+.++|.+.+||++.++.. .| ..+.+.. .+-+.. .|| .++|-||+|+++.+
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~---SF----ea~~~w~~kv~~e~~~IP-tV~vqNKIDlveds 140 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRY---SF----EATLEWYNKVQKETERIP-TVFVQNKIDLVEDS 140 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHH---HH----HHHHHHHHHHHHHhccCC-eEEeeccchhhHhh
Confidence 67889999999999999889999999999999987531 11 1222222 233333 467 89999999999643
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...-.++ +.+...+ . ..++-+|++...|+..
T Consensus 141 ~~~~~ev-E~lak~l---~-----~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 141 QMDKGEV-EGLAKKL---H-----KRLYRTSVKEDFNVMH 171 (246)
T ss_pred hcchHHH-HHHHHHh---h-----hhhhhhhhhhhhhhHH
Confidence 3222222 2222222 1 3458899999999865
No 333
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.57 E-value=1.5e-07 Score=102.28 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=56.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC---
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--- 343 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~--- 343 (694)
++|+|+|.||+|||||+++|++....+.. -+++|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n-------------------------------ypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN-------------------------------YPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecc-------------------------------cccccccceEEEEEeccccc
Confidence 67999999999999999999965422211 14455544333322221
Q ss_pred --------------eEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecC
Q 005478 344 --------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (694)
Q Consensus 344 --------------~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~ 378 (694)
..+.|+|+||..+ +....+..++.+|++|+|||+.
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3589999999432 4456677788999999999985
No 334
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.57 E-value=5.6e-08 Score=95.45 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=58.4
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCC-EEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccch
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD-~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~ 422 (694)
..+.||...| .+..... ....| +-|+|||+.+|+-...-.++ .. .. - =++||||.|++++-.
T Consensus 97 ~Dll~iEs~G--NL~~~~s--p~L~d~~~v~VidvteGe~~P~K~gP-~i----------~~-a-DllVInK~DLa~~v~ 159 (202)
T COG0378 97 LDLLFIESVG--NLVCPFS--PDLGDHLRVVVIDVTEGEDIPRKGGP-GI----------FK-A-DLLVINKTDLAPYVG 159 (202)
T ss_pred CCEEEEecCc--ceecccC--cchhhceEEEEEECCCCCCCcccCCC-ce----------eE-e-eEEEEehHHhHHHhC
Confidence 5788999999 2222211 11244 89999999998522110000 00 00 1 278999999987544
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
..++.+.+..++.- +..+||.+|+++|+|+.+
T Consensus 160 ~dlevm~~da~~~n-------p~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 160 ADLEVMARDAKEVN-------PEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred ccHHHHHHHHHHhC-------CCCCEEEEeCCCCcCHHH
Confidence 44455555555442 467899999999999966
No 335
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.57 E-value=2.6e-07 Score=93.23 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=61.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
....+|+++|.|.+|||||+..|+......... .-+|..-....+.+++
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~y-------------------------------eFTTLtcIpGvi~y~g 108 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASY-------------------------------EFTTLTCIPGVIHYNG 108 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhce-------------------------------eeeEEEeecceEEecC
Confidence 456789999999999999999998432221111 1134444455567889
Q ss_pred eEEEEEeCCCccch-------HHHHHhhcccCCEEEEEEecCCC
Q 005478 344 YHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVG 380 (694)
Q Consensus 344 ~~v~liDtPGh~~f-------~~~~i~~~~~aD~aILVVDa~~g 380 (694)
..++++|.||...= -+..++.++-||+++.|+||+..
T Consensus 109 a~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 109 ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 99999999995431 33445566779999999999985
No 336
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.54 E-value=2.7e-07 Score=94.83 Aligned_cols=171 Identities=20% Similarity=0.261 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhh-hhhHHHHHhhhCCCccchhhccccc---hhhhccCeEEEEE-EE--
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQ-MHKYEKEAKLQGKGSFAYAWALDES---AEERERGITMTVA-VA-- 337 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~-~~~~~~~~~~~g~gs~~~~~~~d~~---~~Er~~GiTi~~~-~~-- 337 (694)
+...|+|.|+||+|||||+++|....-.-..+. +-..-..+...| | +.+-|.. .....+|+-+-.. .+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG-G----AlLGDRiRM~~~~~d~~vfIRS~atRG~ 102 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG-G----ALLGDRIRMQELSRDPGVFIRSMATRGS 102 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--------SS--GGGCHHHHTSTTEEEEEE---SS
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC-C----cccccHHHhcCcCCCCCEEEeecCcCCC
Confidence 457899999999999999999985431100000 000000000001 1 1122211 1223344433211 11
Q ss_pred -------------EEecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC
Q 005478 338 -------------YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 404 (694)
Q Consensus 338 -------------~~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg 404 (694)
-++..++.++|+.|.|.-.-- ..-+..+|.+++|+-...|.- + +..-.-.+++
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~---i---Q~~KaGimEi----- 168 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDE---I---QAIKAGIMEI----- 168 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCC---C---CTB-TTHHHH-----
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccH---H---HHHhhhhhhh-----
Confidence 012346889999999943322 122456999999998877641 1 1111122222
Q ss_pred CCcEEEEEecccccccchhhHhHHHHhhccchhccc--ccCCCceEEEeecccCCCccc
Q 005478 405 VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 405 ip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g--~~~~~v~~IpvSA~~G~nI~e 461 (694)
.. |+||||.|+... +. ...++...+.-.. -.....+++.+||.+|.|+.+
T Consensus 169 -aD-i~vVNKaD~~gA-~~----~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~e 220 (266)
T PF03308_consen 169 -AD-IFVVNKADRPGA-DR----TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDE 220 (266)
T ss_dssp --S-EEEEE--SHHHH-HH----HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHH
T ss_pred -cc-EEEEeCCChHHH-HH----HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHH
Confidence 33 788999996542 22 2333333332111 011135889999999999977
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.49 E-value=1.1e-07 Score=100.07 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=56.2
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
....+.||++.|.-..-... --..+.-+.|+++.++.- +.. .+-..+... -++|+||+|++++.
T Consensus 183 ~~~d~liIEnvGnLvcPa~f---dlge~~~v~vlsV~eg~d---------kpl---Kyp~~f~~A-DIVVLNKiDLl~~~ 246 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASF---DLGEKHKVAVLSVTEGED---------KPL---KYPHMFAAA-SLMLLNKVDLLPYL 246 (290)
T ss_pred cCCcEEEEECCCCccCCCcc---chhhceeEEEEECccccc---------cch---hccchhhcC-cEEEEEhHHcCccc
Confidence 34568889998841000000 011244567778776531 111 111223445 47899999998643
Q ss_pred hhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
...++.+.+.++.+. +..+++++||++|+|+.+
T Consensus 247 ~~dle~~~~~lr~ln-------p~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 247 NFDVEKCIACAREVN-------PEIEIILISATSGEGMDQ 279 (290)
T ss_pred HHHHHHHHHHHHhhC-------CCCcEEEEECCCCCCHHH
Confidence 334555555554443 346789999999999976
No 338
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.47 E-value=3.4e-07 Score=91.47 Aligned_cols=149 Identities=20% Similarity=0.230 Sum_probs=98.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec-CCeE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 345 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~-~~~~ 345 (694)
.+|.++|..|+|||+|=..+....... +-+..|-||++.+..... ++..
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~------------------------------D~~rlg~tidveHsh~RflGnl~ 54 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIAR------------------------------DTRRLGATIDVEHSHVRFLGNLV 54 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhh------------------------------hhhccCCcceeeehhhhhhhhhe
Confidence 469999999999999877766321111 123367788888777655 3477
Q ss_pred EEEEeCCCccchHHHHHh-----hcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEecccccc
Q 005478 346 VVVLDSPGHKDFVPNMIS-----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~-----~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVVNK~Dlv~ 419 (694)
+.+||+.|++.|+.+..+ -++..+++|+|.|+...+++.++. .....+..+.. --..++++.+.|||++.
T Consensus 55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~----~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH----YYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH----HHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 889999999999988776 356689999999999887776663 23333333332 22234899999999986
Q ss_pred cch--hhHhHHHHhhccchhcccccCCCceEEEeecc
Q 005478 420 YSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (694)
Q Consensus 420 ~~~--e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~ 454 (694)
.+. ..|+...+.+..+-..++ +..+|+|..
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~-----~~~f~Tsiw 162 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE-----CKCFPTSIW 162 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc-----ccccccchh
Confidence 432 334444444444333222 344666654
No 339
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.6e-06 Score=93.14 Aligned_cols=90 Identities=22% Similarity=0.260 Sum_probs=56.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE------
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF------ 339 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~------ 339 (694)
.++++|||-||+|||||+++|+.....+.. |.|++ -|...|++.-.. ..+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aN-----------------YPF~T------IePN~Giv~v~d-~rl~~L~~~ 57 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIAN-----------------YPFCT------IEPNVGVVYVPD-CRLDELAEI 57 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccC-----------------CCccc------ccCCeeEEecCc-hHHHHHHHh
Confidence 468999999999999999999965433322 21111 111112111000 000
Q ss_pred -e----cCCeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCC
Q 005478 340 -D----SKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (694)
Q Consensus 340 -~----~~~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~ 379 (694)
. .-...+.|+|.+|... +-...+..++.+|++++||++..
T Consensus 58 ~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 58 VKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 0 0123578999999433 66777888999999999999984
No 340
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.46 E-value=1.2e-06 Score=91.35 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=59.6
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~ 421 (694)
.++.++||.|-|.-.--- .-...+|.+++|.-...|. .-|... .-.|.+-. |+||||+|+.+.
T Consensus 142 aG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD--------~~Q~iK----~GimEiaD-i~vINKaD~~~A- 204 (323)
T COG1703 142 AGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGD--------DLQGIK----AGIMEIAD-IIVINKADRKGA- 204 (323)
T ss_pred cCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCc--------HHHHHH----hhhhhhhh-eeeEeccChhhH-
Confidence 468899999998432211 1234489999988776653 112211 11233333 789999996542
Q ss_pred hhhHhHHHHhhccc---hhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~~~l~~~---l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+..+.++...+... ....+| ..+++.+||.+|+|+.+
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W---~ppv~~t~A~~g~Gi~~ 244 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGW---RPPVVTTSALEGEGIDE 244 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCC---CCceeEeeeccCCCHHH
Confidence 33334444444333 233444 34789999999999976
No 341
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.45 E-value=2e-06 Score=98.24 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=70.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|.+|+|||||+|.|++....... ....++|. .........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vs-----------------------------s~~~~TTr-~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTD-----------------------------AFGMGTTS-VQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccccccc-----------------------------CCCCCceE-EEEEEEEECCc
Confidence 4578999999999999999999964322110 01133333 32333445678
Q ss_pred EEEEEeCCCccch------HHHHH----hhcc--cCCEEEEEEecCCCccccccccchhHHHHHHHHHH-HcCC---CcE
Q 005478 345 HVVVLDSPGHKDF------VPNMI----SGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGV---DQL 408 (694)
Q Consensus 345 ~v~liDtPGh~~f------~~~~i----~~~~--~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lgi---p~i 408 (694)
.+.||||||..+. ...++ ..+. .+|++|+|+....... .......+..+. .+|- +++
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~-------D~eD~~aLr~Iq~lFG~~Iwk~t 239 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR-------DSNDLPLLRTITDVLGPSIWFNA 239 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------cHHHHHHHHHHHHHhCHHhHcCE
Confidence 9999999996642 11222 2222 4798888876542110 012222333332 3442 568
Q ss_pred EEEEecccccc
Q 005478 409 IVAVNKMDAVQ 419 (694)
Q Consensus 409 IVVVNK~Dlv~ 419 (694)
|||+|..|.+.
T Consensus 240 IVVFThgD~lp 250 (763)
T TIGR00993 240 IVTLTHAASAP 250 (763)
T ss_pred EEEEeCCccCC
Confidence 99999999885
No 342
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.42 E-value=2.4e-06 Score=90.41 Aligned_cols=144 Identities=17% Similarity=0.274 Sum_probs=79.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--C
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~--~ 343 (694)
.++|.|+|..|.|||||+|.|+........... +.......+..++......+... .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSI---------------------PPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccc---------------------cccccccccccceeeEEEEeccCCcc
Confidence 478999999999999999999964322211000 00001112333444333333333 3
Q ss_pred eEEEEEeCCCccc-------------hHHHH-----Hhh--c-------ccCCEEEEEEecCCCccccccccchhHHHHH
Q 005478 344 YHVVVLDSPGHKD-------------FVPNM-----ISG--A-------TQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (694)
Q Consensus 344 ~~v~liDtPGh~~-------------f~~~~-----i~~--~-------~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~ 396 (694)
..++|+||||+.+ |+... ... . ...|++|++|+.+... +.+...+.
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-------L~~~Di~~ 135 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-------LKPLDIEF 135 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-------S-HHHHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-------chHHHHHH
Confidence 5688999999543 21111 000 0 1268999999986321 23444444
Q ss_pred HHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccc
Q 005478 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (694)
Q Consensus 397 l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~ 441 (694)
+..+..+ ++ +|-||.|.|... .+.+..++..+...++..++
T Consensus 136 mk~Ls~~-vN-vIPvIaKaD~lt--~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 136 MKRLSKR-VN-VIPVIAKADTLT--PEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp HHHHTTT-SE-EEEEESTGGGS---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhccc-cc-EEeEEecccccC--HHHHHHHHHHHHHHHHHcCc
Confidence 4433322 44 899999999874 67777788888888876654
No 343
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.40 E-value=4.5e-07 Score=89.98 Aligned_cols=155 Identities=16% Similarity=0.187 Sum_probs=93.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEE-EEEEEEE-ecC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYF-DSK 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi-~~~~~~~-~~~ 342 (694)
..++++|||...+|||.|+-.++. +.. +++..+-+.= ..+...+ +..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~--~~f-----------------------------p~~yvPTVFdnys~~v~V~dg~ 51 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT--NAF-----------------------------PEEYVPTVFDNYSANVTVDDGK 51 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc--CcC-----------------------------cccccCeEEccceEEEEecCCC
Confidence 457899999999999999876662 111 1111111110 0111223 244
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEecccccccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVVVNK~Dlv~~~ 421 (694)
...+.||||+|+++|-+...-.+.++|++|++++..... .|..+ ..++.-.+.+.. ++| +|+|.+|.|+.+ +
T Consensus 52 ~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~---S~~nv--~~kW~pEi~~~cp~vp-iiLVGtk~DLr~-d 124 (198)
T KOG0393|consen 52 PVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPE---SFENV--KSKWIPEIKHHCPNVP-IILVGTKADLRD-D 124 (198)
T ss_pred EEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChh---hHHHH--HhhhhHHHHhhCCCCC-EEEEeehHHhhh-C
Confidence 566889999999999775544677899999988876532 12111 223333333333 567 999999999973 2
Q ss_pred hhhHhHHH---------HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 422 KDRFDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 422 ~e~~~~i~---------~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
....+.+. ++...+.+.+| .+.++.+||++..|+.+
T Consensus 125 ~~~~~~l~~~~~~~Vt~~~g~~lA~~ig----a~~y~EcSa~tq~~v~~ 169 (198)
T KOG0393|consen 125 PSTLEKLQRQGLEPVTYEQGLELAKEIG----AVKYLECSALTQKGVKE 169 (198)
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhC----cceeeeehhhhhCCcHH
Confidence 22222222 22222333444 25789999999999866
No 344
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.39 E-value=6.7e-07 Score=99.79 Aligned_cols=154 Identities=20% Similarity=0.197 Sum_probs=97.7
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEec
Q 005478 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 262 ~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~ 341 (694)
+.++.++|+++|..|+|||+||-+|+...-. +.- -.+-.-|+|- ..+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~---------------------------~~V-P~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFV---------------------------DAV-PRRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhcc---------------------------ccc-cccCCccccC---CccCc
Confidence 4567899999999999999999999954211 000 0011223332 22223
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC-----CCcEEEEEeccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----VDQLIVAVNKMD 416 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-----ip~iIVVVNK~D 416 (694)
......|+||+...+-.......+++||++++|.+.++.. .++ +....++-++++++ +| +|+|.||+|
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~---T~D---~ist~WLPlir~~~~~~~~~P-VILvGNK~d 126 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES---TVD---RISTKWLPLIRQLFGDYHETP-VILVGNKSD 126 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH---Hhh---hhhhhhhhhhhcccCCCccCC-EEEEeeccC
Confidence 4555889999977665566677889999999999988742 122 22333445566655 56 999999999
Q ss_pred ccccchhhHhH----HHHhhccchhcccccCCCceEEEeecccCCCcccCC
Q 005478 417 AVQYSKDRFDS----IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (694)
Q Consensus 417 lv~~~~e~~~~----i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~ 463 (694)
.........+. |..++.++= .-|.+||++-.|+.+..
T Consensus 127 ~~~~~~~s~e~~~~pim~~f~EiE----------tciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 127 NGDNENNSDEVNTLPIMIAFAEIE----------TCIECSALTLANVSELF 167 (625)
T ss_pred CccccccchhHHHHHHHHHhHHHH----------HHHhhhhhhhhhhHhhh
Confidence 88644432222 222222211 23788999988887643
No 345
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.39 E-value=1.8e-06 Score=73.41 Aligned_cols=76 Identities=24% Similarity=0.489 Sum_probs=56.5
Q ss_pred CCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeecccccceeccCCceeEEecccccccccc
Q 005478 493 KPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (694)
Q Consensus 493 ~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~r 571 (694)
.|-+|.|...+... .+ + +.|+|..|+|++|..| -.....+|++||.++++++.|.+||.|+|.+.|.. ++..
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~-IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~e 75 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-A-IVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKE 75 (81)
T ss_dssp -SEEEEEEEEEEECTCC-E-EEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-T
T ss_pred CceEEEECCcCEEecCC-e-EEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCC
Confidence 35555565555444 46 5 6679999999999999 33457899999999999999999999999999854 7888
Q ss_pred Ccee
Q 005478 572 GGVL 575 (694)
Q Consensus 572 G~VL 575 (694)
||+|
T Consensus 76 GDiL 79 (81)
T PF14578_consen 76 GDIL 79 (81)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9987
No 346
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3e-06 Score=96.10 Aligned_cols=180 Identities=18% Similarity=0.176 Sum_probs=97.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhh--HHHHHhhhCCCccchh-------------hccccchhhhcc
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHK--YEKEAKLQGKGSFAYA-------------WALDESAEERER 328 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~--~~~~~~~~g~gs~~~~-------------~~~d~~~~Er~~ 328 (694)
..+.+|+|.|.+++||||++|+|+++.-......... +-.....+|...+... .....+..+..-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4677899999999999999999998753322111000 0000011222111000 000001111100
Q ss_pred CeEEEEEEEEEecC-----CeEEEEEeCCCc---cchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH
Q 005478 329 GITMTVAVAYFDSK-----NYHVVVLDSPGH---KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 400 (694)
Q Consensus 329 GiTi~~~~~~~~~~-----~~~v~liDtPGh---~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll 400 (694)
|-- .+...+.... ...+.++|.||. ..+..........+|++|||+.|..- ..++..++...
T Consensus 187 ~~~-sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt---------lt~sek~Ff~~ 256 (749)
T KOG0448|consen 187 GAG-SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT---------LTLSEKQFFHK 256 (749)
T ss_pred Ccc-eEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH---------hHHHHHHHHHH
Confidence 000 0111111111 126889999994 34555556667789999999999763 24555555444
Q ss_pred HHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecc
Q 005478 401 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (694)
Q Consensus 401 ~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~ 454 (694)
..-+.|+++|+.||+|....-++-.+.++.++.. |+-..+....-.++++||+
T Consensus 257 vs~~KpniFIlnnkwDasase~ec~e~V~~Qi~e-L~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 257 VSEEKPNIFILNNKWDASASEPECKEDVLKQIHE-LSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred hhccCCcEEEEechhhhhcccHHHHHHHHHHHHh-cCcccHhhhcCeeEEEecc
Confidence 4556788999999999875333344556666442 2222232333356888865
No 347
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.35 E-value=8.8e-07 Score=97.09 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=92.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
......+.++|.+|+|||++++.++.....+... .-+|-.+-..+++++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpY-------------------------------aFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPY-------------------------------AFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCc-------------------------------ccccchhhhhhhhhh
Confidence 4456789999999999999999998544333211 112333444456666
Q ss_pred CeEEEEEeCCCccch------HHHH--Hhhcc-cCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEE
Q 005478 343 NYHVVVLDSPGHKDF------VPNM--ISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAV 412 (694)
Q Consensus 343 ~~~v~liDtPGh~~f------~~~~--i~~~~-~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVV 412 (694)
-.+++++||||.-+- .-+| +.+++ .--++++++|-+.- +|.+ +..|. ..+.-++. +.-+.+|+|+
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~---CGyS-va~Qv-kLfhsIKpLFaNK~~Ilvl 288 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM---CGYS-VAAQV-KLYHSIKPLFANKVTILVL 288 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh---hCCC-HHHHH-HHHHHhHHHhcCCceEEEe
Confidence 678999999994331 1112 22222 23468889998753 2332 12222 22222332 2223389999
Q ss_pred ecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||+|+.. .+.+.+-.+++.+.+..- .+++++.+|..+.+|+-.
T Consensus 289 NK~D~m~--~edL~~~~~~ll~~~~~~----~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 289 NKIDAMR--PEDLDQKNQELLQTIIDD----GNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred ecccccC--ccccCHHHHHHHHHHHhc----cCceEEEecccchhceee
Confidence 9999874 233333333444444332 347899999999999865
No 348
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=5.6e-06 Score=80.57 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=100.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
....+++++|..+.||||++++.+. +..... -...-|+........-..+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~lt--geFe~~---------------------------y~at~Gv~~~pl~f~tn~g~ 58 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLT--GEFEKT---------------------------YPATLGVEVHPLLFDTNRGQ 58 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhc--ccceec---------------------------ccCcceeEEeeeeeecccCc
Confidence 4678999999999999999999882 211110 01112332222221112234
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC-CCcEEEEEecccccccch
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVVVNK~Dlv~~~~ 422 (694)
.+|..|||.|++.|....-.+.-++.+||+.+|...... .....++|-.+++..+ +| |+++.||.|.-.. +
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t------~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r-~ 130 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT------YKNVPRWHRDLVRVRENIP-IVLCGNKVDIKAR-K 130 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhh------hhcchHHHHHHHHHhcCCC-eeeeccceecccc-c
Confidence 889999999999999888888888999999999886542 2344567777777655 46 9999999996421 1
Q ss_pred hhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
++..--.+.. ..++.++.+||+.+.|+..+
T Consensus 131 -----~k~k~v~~~r-----kknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 131 -----VKAKPVSFHR-----KKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred -----cccccceeee-----cccceeEEeecccccccccc
Confidence 1111112221 14567899999999999764
No 349
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.24 E-value=5.1e-06 Score=71.48 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=60.3
Q ss_pred cceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeee----cccccceeccCCceeEEecccccccccc
Q 005478 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (694)
Q Consensus 497 ~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i~r 571 (694)
..|++++..+ .|.+ +++||.+|+|++||.|.+...+...+|..|.. ...++++|.|||+++|. |+ .+++.
T Consensus 3 a~VfK~~~d~~~g~i-~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~ 77 (83)
T cd04092 3 ALAFKVVHDPQRGPL-TFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT--GL--KQTRT 77 (83)
T ss_pred EEEEecccCCCCCeE-EEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEE--CC--CCccc
Confidence 4466666666 7888 89999999999999999876666667777754 35689999999999875 65 44788
Q ss_pred Cceeec
Q 005478 572 GGVLCH 577 (694)
Q Consensus 572 G~VL~~ 577 (694)
||+||.
T Consensus 78 Gdtl~~ 83 (83)
T cd04092 78 GDTLVT 83 (83)
T ss_pred CCEEeC
Confidence 999873
No 350
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.23 E-value=5.8e-06 Score=71.00 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=60.7
Q ss_pred cceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----ccccceeccCCceeEEecccccccccc
Q 005478 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMS 571 (694)
Q Consensus 497 ~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~r 571 (694)
..|+++...+ .|.+ +++||.+|+|++||.|.+...+...+|..|... ..++++|.|||+++|. |++ .++.
T Consensus 3 a~Vfk~~~d~~~G~~-~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g~~--~~~~ 77 (83)
T cd04088 3 ALVFKTIHDPFVGKL-SFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVA--GLK--DTAT 77 (83)
T ss_pred EEEEEcccCCCCceE-EEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEE--CCC--CCcc
Confidence 3456666666 7888 899999999999999998877767778787542 4688999999999985 653 4778
Q ss_pred Cceeec
Q 005478 572 GGVLCH 577 (694)
Q Consensus 572 G~VL~~ 577 (694)
|++|++
T Consensus 78 Gdtl~~ 83 (83)
T cd04088 78 GDTLCD 83 (83)
T ss_pred CCEeeC
Confidence 999863
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=2.3e-06 Score=82.38 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=39.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeE
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~ 345 (694)
.++|+++|.+|+|||||+|+|++..... ....+|+|....... . +..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~--~-~~~ 148 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCK------------------------------VAPIPGETKVWQYIT--L-MKR 148 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCcee------------------------------eCCCCCeeEeEEEEE--c-CCC
Confidence 4689999999999999999998543221 122367777654433 2 235
Q ss_pred EEEEeCCCc
Q 005478 346 VVVLDSPGH 354 (694)
Q Consensus 346 v~liDtPGh 354 (694)
+.|+||||.
T Consensus 149 ~~liDtPGi 157 (157)
T cd01858 149 IYLIDCPGV 157 (157)
T ss_pred EEEEECcCC
Confidence 899999993
No 352
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.21 E-value=5.5e-06 Score=71.73 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=63.1
Q ss_pred CCcccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----ccccceeccCCceeEEecccccc
Q 005478 493 KPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVS 567 (694)
Q Consensus 493 ~pl~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~ 567 (694)
.||.+.|+.+...+ .|.+ +++||.+|+|+.||.|.+.. ....+|..|... ..++++|.|||+++|. |+ .
T Consensus 2 ~p~~~~Vfkv~~d~~~G~l-a~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~--gl--~ 75 (85)
T cd03690 2 SELSGTVFKIERDDKGERL-AYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILT--GL--K 75 (85)
T ss_pred CCcEEEEEEeEECCCCCeE-EEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEE--CC--C
Confidence 68889999998888 8998 89999999999999998654 444567677643 4688999999999887 55 3
Q ss_pred ccccCceee
Q 005478 568 RVMSGGVLC 576 (694)
Q Consensus 568 ~i~rG~VL~ 576 (694)
++..|++|+
T Consensus 76 ~~~~Gdtl~ 84 (85)
T cd03690 76 GLRVGDVLG 84 (85)
T ss_pred CCcCccccC
Confidence 467898885
No 353
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.19 E-value=5.5e-05 Score=71.24 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=87.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEE-EEEEEEEecC-
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYFDSK- 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi-~~~~~~~~~~- 342 (694)
+.-+|+++|.-++|||.++.+|++....+...... |+ |+-...+++.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~p-------------------------------TiEDiY~~svet~r 56 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHP-------------------------------TIEDIYVASVETDR 56 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcccc-------------------------------chhhheeEeeecCC
Confidence 45689999999999999999999654333221111 22 2222333332
Q ss_pred --CeEEEEEeCCCccchHH-HHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHH-HHHH----cCCCcEEEEEec
Q 005478 343 --NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS----FGVDQLIVAVNK 414 (694)
Q Consensus 343 --~~~v~liDtPGh~~f~~-~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~----lgip~iIVVVNK 414 (694)
...+.|.||.|...+.. .-..++.-+|+.+||++..... .| |-.+.+. .+.. -.+| ++|..||
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf-----~rv~llKk~Idk~KdKKEvp-iVVLaN~ 127 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SF-----QRVELLKKEIDKHKDKKEVP-IVVLANK 127 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HH-----HHHHHHHHHHhhcccccccc-EEEEech
Confidence 35688999999988833 3345667799999999987642 11 2222221 1111 2356 8999999
Q ss_pred ccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 415 ~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.|+.+. .+.+ .++.... . ....+..+.++|.....+.+
T Consensus 128 rdr~~p--~~vd---~d~A~~W---a-~rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 128 RDRAEP--REVD---MDVAQIW---A-KREKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred hhcccc--hhcC---HHHHHHH---H-hhhheeEEEEEeccchhhhh
Confidence 999642 1111 1111111 0 11335667888887766654
No 354
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.19 E-value=2.6e-06 Score=83.69 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=42.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|.+|+|||||+|+|++..... ....+|+|.......+. .
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~------------------------------~~~~pg~T~~~~~~~~~---~ 162 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACN------------------------------VGATPGVTKSMQEVHLD---K 162 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccce------------------------------ecCCCCeEcceEEEEeC---C
Confidence 45789999999999999999999543221 12337888876665542 3
Q ss_pred EEEEEeCCCc
Q 005478 345 HVVVLDSPGH 354 (694)
Q Consensus 345 ~v~liDtPGh 354 (694)
.+.|+||||.
T Consensus 163 ~~~l~DtPGi 172 (172)
T cd04178 163 KVKLLDSPGI 172 (172)
T ss_pred CEEEEECcCC
Confidence 6899999993
No 355
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.17 E-value=1.2e-05 Score=69.79 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=61.4
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec---ccccceeccCCceeEEeccc-ccccc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRV 569 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i 569 (694)
|.+.|+++...+ .|.+ +++||.+|+|+.||.|++...++..+|..|... ..++++|.|||++++. .++ +..++
T Consensus 1 ~~~~Vfk~~~d~~~G~i-~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~ 78 (86)
T cd03699 1 LRALIFDSWYDPYRGVI-ALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDA 78 (86)
T ss_pred CEEEEEEeeccCCCCEE-EEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCcc
Confidence 356677777777 8988 899999999999999988766655666666543 4688999999999884 122 22457
Q ss_pred ccCceeec
Q 005478 570 MSGGVLCH 577 (694)
Q Consensus 570 ~rG~VL~~ 577 (694)
..|++||+
T Consensus 79 ~~Gdtl~~ 86 (86)
T cd03699 79 RVGDTITL 86 (86)
T ss_pred ccccEeeC
Confidence 78999874
No 356
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.12 E-value=1.5e-05 Score=69.02 Aligned_cols=77 Identities=25% Similarity=0.444 Sum_probs=60.1
Q ss_pred cccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC---eeeEEEeeee----cccccceeccCCceeEEeccccc
Q 005478 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDV 566 (694)
Q Consensus 495 l~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~---~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~ 566 (694)
|++.|+++...+ .|.+ +++||.+|+|++||+|++...+ ...+|..|.. ...++++|.|||++++. ++
T Consensus 1 ~~~~vfk~~~d~~~g~i-~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~--gl-- 75 (86)
T cd03691 1 LQMLVTTLDYDDYVGRI-AIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--GI-- 75 (86)
T ss_pred CeEEEEEeEecCCCCeE-EEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE--CC--
Confidence 467788888887 7888 8999999999999999876542 2456777743 24689999999998765 65
Q ss_pred cccccCceee
Q 005478 567 SRVMSGGVLC 576 (694)
Q Consensus 567 ~~i~rG~VL~ 576 (694)
.++..|++|+
T Consensus 76 ~~~~~Gdtl~ 85 (86)
T cd03691 76 EDITIGDTIC 85 (86)
T ss_pred CCCcccceec
Confidence 3577899885
No 357
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.12 E-value=1.5e-05 Score=68.36 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=57.1
Q ss_pred eEeEEecCCCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----ccccceeccCCceeEEeccccccccccCce
Q 005478 499 ICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (694)
Q Consensus 499 I~~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~rG~V 574 (694)
|+.+...+.|.+ +++||.+|+|++||.|++...+...+|..|... ..++++|.|||++++. ++ . ++.||+
T Consensus 5 vfK~~~~~~G~i-~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~--g~--~-~~~Gdt 78 (81)
T cd04091 5 AFKLEEGRFGQL-TYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI--D-CASGDT 78 (81)
T ss_pred EEEeecCCCCCE-EEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEE--CC--C-cccCCE
Confidence 444444447888 899999999999999999887777778777542 4689999999999865 65 3 778999
Q ss_pred ee
Q 005478 575 LC 576 (694)
Q Consensus 575 L~ 576 (694)
|+
T Consensus 79 l~ 80 (81)
T cd04091 79 FT 80 (81)
T ss_pred ec
Confidence 86
No 358
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.11 E-value=1.5e-05 Score=69.00 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=57.9
Q ss_pred eEeEEe---cC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec----ccccceeccCCceeEEeccccccccc
Q 005478 499 ICDVLK---SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVM 570 (694)
Q Consensus 499 I~~v~~---~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (694)
|+.+.. .+ .|.+ +++||.+|+|+.||.|+....+...+|..|... ..++++|.|||++++. ++ .+++
T Consensus 3 vfKv~~~~~~~~~Gkl-a~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--gl--~~~~ 77 (85)
T cd03689 3 VFKIQANMDPAHRDRI-AFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--NP--GNFQ 77 (85)
T ss_pred EEEEecccCCCCCcEE-EEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--CC--CCcc
Confidence 445555 66 7988 899999999999999988776656667676542 4688999999999987 54 4577
Q ss_pred cCceeec
Q 005478 571 SGGVLCH 577 (694)
Q Consensus 571 rG~VL~~ 577 (694)
.|++||+
T Consensus 78 ~Gdtl~~ 84 (85)
T cd03689 78 IGDTLTE 84 (85)
T ss_pred ccCEeeC
Confidence 8999984
No 359
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.11 E-value=7.2e-06 Score=83.39 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=59.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
-..+|.++|.|.+|||||+..|++....+... -+.|.........+++.
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasy-------------------------------efttl~~vpG~~~y~ga 106 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAY-------------------------------EFTTLTTVPGVIRYKGA 106 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCccccc-------------------------------cceeEEEecceEecccc
Confidence 34589999999999999999998654333211 22333333333446788
Q ss_pred EEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCCC
Q 005478 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (694)
Q Consensus 345 ~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~g 380 (694)
.+.|.|.||..+ --+..+.-++-|.++++|+|+-.+
T Consensus 107 Kiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 107 KIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred ceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 899999999544 234456667779999999998764
No 360
>PRK14974 cell division protein FtsY; Provisional
Probab=98.08 E-value=1.4e-05 Score=86.56 Aligned_cols=93 Identities=23% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCccc----hHHHHH--hhcccCCEEEEEEecCCCccccccccchhHHHHHH-HHHHHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHKD----FVPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~~----f~~~~i--~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~lgip~iIVVVNK 414 (694)
.++.++||||||... ++..+. .....+|..+||+||..|- ...+.+ .+...+++. -+++||
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~----------d~~~~a~~f~~~~~~~--giIlTK 288 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN----------DAVEQAREFNEAVGID--GVILTK 288 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch----------hHHHHHHHHHhcCCCC--EEEEee
Confidence 356799999999543 332221 1234589999999998651 222222 233356776 467899
Q ss_pred ccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 415 ~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|....-.. +...... . ..|+.+++ +|+++..
T Consensus 289 lD~~~~~G~----~ls~~~~----~-----~~Pi~~i~--~Gq~v~D 320 (336)
T PRK14974 289 VDADAKGGA----ALSIAYV----I-----GKPILFLG--VGQGYDD 320 (336)
T ss_pred ecCCCCccH----HHHHHHH----H-----CcCEEEEe--CCCChhh
Confidence 997642121 2211111 1 24666666 7888855
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.07 E-value=3.6e-05 Score=82.93 Aligned_cols=94 Identities=12% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCeEEEEEeCCCccchHH-------HHHhh-----cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEE
Q 005478 342 KNYHVVVLDSPGHKDFVP-------NMISG-----ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~-------~~i~~-----~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI 409 (694)
.++.++||||||...... .+... ...++..+||+||..+- ....+.......+++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 567899999999543221 12221 13478899999999752 1122222233345554 5
Q ss_pred EEEecccccccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 410 VVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+++||+|.... .-.+...+ ... .+|+..++ +|++++.
T Consensus 264 iIlTKlD~t~~----~G~~l~~~----~~~-----~~Pi~~v~--~Gq~~~D 300 (318)
T PRK10416 264 IILTKLDGTAK----GGVVFAIA----DEL-----GIPIKFIG--VGEGIDD 300 (318)
T ss_pred EEEECCCCCCC----ccHHHHHH----HHH-----CCCEEEEe--CCCChhh
Confidence 78999996532 22222222 122 24666776 7888754
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.00 E-value=8.7e-05 Score=78.31 Aligned_cols=67 Identities=22% Similarity=0.396 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCccchHHHHH-------hhc-----ccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEE
Q 005478 342 KNYHVVVLDSPGHKDFVPNMI-------SGA-----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i-------~~~-----~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI 409 (694)
.++.+.||||||....-...+ ..+ ..+|..+||+|+..+- ........+.+.+++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 568899999999654322222 111 1389999999998651 2222333344456665 4
Q ss_pred EEEecccccc
Q 005478 410 VAVNKMDAVQ 419 (694)
Q Consensus 410 VVVNK~Dlv~ 419 (694)
+++||+|...
T Consensus 222 ~IlTKlDe~~ 231 (272)
T TIGR00064 222 IILTKLDGTA 231 (272)
T ss_pred EEEEccCCCC
Confidence 6799999763
No 363
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.99 E-value=3.5e-05 Score=80.65 Aligned_cols=53 Identities=32% Similarity=0.490 Sum_probs=44.2
Q ss_pred cCCCcEEEEEeccccc-------ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 403 FGVDQLIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 403 lgip~iIVVVNK~Dlv-------~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+|++ ++||++|+|.+ +|..+.|+.|...++.|+-.+|. ..|.+|++...|+..
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNIDL 280 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccchHH
Confidence 5666 89999999984 36678899999999999977774 569999999999864
No 364
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=5e-05 Score=80.76 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=101.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCC--CccchhhccccchhhhccCeEEEEEEE-EEec-
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVA-YFDS- 341 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~--gs~~~~~~~d~~~~Er~~GiTi~~~~~-~~~~- 341 (694)
.+-|.++|+-..||||+|+.|+...-- . ...|- .+-+|-.+|....++..+|.+.-+... .|..
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dyp-g-----------~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL 125 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYP-G-----------LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGL 125 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCC-c-----------cccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhh
Confidence 345899999999999999999954211 0 01111 122344566666677777776644311 1110
Q ss_pred ----------------C---CeEEEEEeCCCcc-----------chHHHHHhhcccCCEEEEEEecCCCccccccccchh
Q 005478 342 ----------------K---NYHVVVLDSPGHK-----------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKG 391 (694)
Q Consensus 342 ----------------~---~~~v~liDtPGh~-----------~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~ 391 (694)
. -..++||||||.- +|..-..=-+..+|.+||+.|+..-. +..
T Consensus 126 ~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-------Isd 198 (532)
T KOG1954|consen 126 NKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISD 198 (532)
T ss_pred hhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-------ccH
Confidence 0 1359999999932 23333333356799999999998643 245
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhccc--ccCCCceEEEeecccCCCc
Q 005478 392 LTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNL 459 (694)
Q Consensus 392 qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g--~~~~~v~~IpvSA~~G~nI 459 (694)
.+.+.+..++...-+ +-||+||.|.++ .+++..+ ...++..+| ++.+.++-+.+-+.+..-+
T Consensus 199 Ef~~vi~aLkG~Edk-iRVVLNKADqVd--tqqLmRV---yGALmWslgkv~nTpev~rvYigSfw~hPl 262 (532)
T KOG1954|consen 199 EFKRVIDALKGHEDK-IRVVLNKADQVD--TQQLMRV---YGALMWSLGKVMNTPEVSRVYIGSFWDHPL 262 (532)
T ss_pred HHHHHHHHhhCCcce-eEEEeccccccC--HHHHHHH---HHHHHHhhhhhcCCCcceeEEeeccccCcc
Confidence 677777777766555 789999999985 3333222 233333332 2234455566666554444
No 365
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.96 E-value=1.8e-05 Score=76.16 Aligned_cols=82 Identities=17% Similarity=0.012 Sum_probs=52.0
Q ss_pred HHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccchhhHhHHHHhhccchhc
Q 005478 361 MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 438 (694)
Q Consensus 361 ~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~ 438 (694)
.++.+..+|++++|+|++.+. ..........+... +.| +|+|+||+|+.+ ++........+...+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~--------~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~--~~~~~~~~~~~~~~~-- 68 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM--------GTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP--TWVTARWVKILSKEY-- 68 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc--------cccCHHHHHHHHhccCCCC-EEEEEEchhcCC--HHHHHHHHHHHhcCC--
Confidence 356778899999999998753 12233344444433 366 899999999974 333333333332211
Q ss_pred ccccCCCceEEEeecccCCCccc
Q 005478 439 CGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 439 ~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ..++++||+++.|+.+
T Consensus 69 -~-----~~~~~iSa~~~~~~~~ 85 (157)
T cd01858 69 -P-----TIAFHASINNPFGKGS 85 (157)
T ss_pred -c-----EEEEEeeccccccHHH
Confidence 1 2258999999999865
No 366
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.95 E-value=9.6e-05 Score=74.60 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=80.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccC-eEEEEEEEEEecCC-
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG-ITMTVAVAYFDSKN- 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~G-iTi~~~~~~~~~~~- 343 (694)
.+||-+||..|.|||||+|.|......- +++ .+ ...++.+. +.+......++.++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~----------------~s~------~~-~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSD----------------SSS------SD-NSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhh----------------ccC------CC-cccCcccceEEEEeeeeeeeecce
Confidence 5899999999999999999998431110 000 01 11222222 22333333344444
Q ss_pred -eEEEEEeCCCccc---------------------hHHHHHhhcc-------cCCEEEEEEecCCCccccccccchhHHH
Q 005478 344 -YHVVVLDSPGHKD---------------------FVPNMISGAT-------QSDAAILVIDASVGSFEVGMNTAKGLTR 394 (694)
Q Consensus 344 -~~v~liDtPGh~~---------------------f~~~~i~~~~-------~aD~aILVVDa~~g~~e~~~~~~~~qt~ 394 (694)
.+++++||||..| |.+.-+...+ ..+++++.|..+.-. +.+.+.
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-------LrplDi 175 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-------LRPLDI 175 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-------cCcccH
Confidence 4688999999444 3322222111 256888888876432 345555
Q ss_pred HHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccc
Q 005478 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (694)
Q Consensus 395 e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~ 441 (694)
|.+.-+.. +-.+|-||-|.|... -+...++++.+++-|...++
T Consensus 176 eflkrLt~--vvNvvPVIakaDtlT--leEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 176 EFLKRLTE--VVNVVPVIAKADTLT--LEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHhh--hheeeeeEeeccccc--HHHHHHHHHHHHHHHHhcCc
Confidence 65543332 334778899999764 33345566667766666554
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.95 E-value=1.3e-05 Score=76.97 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=41.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
...+++++|++|+|||||+|+|+...... ....+|+|.......+. .
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~---~ 145 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK------------------------------VGNVPGTTTSQQEVKLD---N 145 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc------------------------------ccCCCCcccceEEEEec---C
Confidence 35779999999999999999999532211 12236777776655543 4
Q ss_pred EEEEEeCCCc
Q 005478 345 HVVVLDSPGH 354 (694)
Q Consensus 345 ~v~liDtPGh 354 (694)
.+.|+||||.
T Consensus 146 ~~~liDtPG~ 155 (155)
T cd01849 146 KIKLLDTPGI 155 (155)
T ss_pred CEEEEECCCC
Confidence 6999999993
No 368
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.94 E-value=1.8e-05 Score=75.87 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=50.0
Q ss_pred hcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccC
Q 005478 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (694)
Q Consensus 364 ~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~ 443 (694)
.+..+|++|+|+|++.+.. .+..+...++...+.| +|+|+||+|+.+ ........ .+....
T Consensus 9 i~~~aD~vl~V~D~~~~~~--------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~--~~~~~~~~----~~~~~~---- 69 (156)
T cd01859 9 IIKESDVVLEVLDARDPEL--------TRSRKLERYVLELGKK-LLIVLNKADLVP--KEVLEKWK----SIKESE---- 69 (156)
T ss_pred HHhhCCEEEEEeeCCCCcc--------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC--HHHHHHHH----HHHHhC----
Confidence 3445999999999987531 2333444445556777 899999999863 22222111 111111
Q ss_pred CCceEEEeecccCCCccc
Q 005478 444 ASLTWIPLSALENQNLVT 461 (694)
Q Consensus 444 ~~v~~IpvSA~~G~nI~e 461 (694)
..+++++||++|.|+.+
T Consensus 70 -~~~~~~iSa~~~~gi~~ 86 (156)
T cd01859 70 -GIPVVYVSAKERLGTKI 86 (156)
T ss_pred -CCcEEEEEccccccHHH
Confidence 24679999999999966
No 369
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.94 E-value=0.00013 Score=78.36 Aligned_cols=144 Identities=19% Similarity=0.329 Sum_probs=88.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhh-hccCeEEEEEEEEEecCC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAVAYFDSKN 343 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~E-r~~GiTi~~~~~~~~~~~ 343 (694)
-.++|-++|..|.||||++|.|++.. ..... ..+..... ..+++.+......+..++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~~ 79 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDET---------------------EIDDIRAEGTSPTLEIKITKAELEEDG 79 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCCC---------------------CccCcccccCCcceEEEeeeeeeecCC
Confidence 46899999999999999999999651 11100 01111111 335555655555555554
Q ss_pred --eEEEEEeCCCccchHH-------------HHHh-hc-------c-------cCCEEEEEEecCCCccccccccchhHH
Q 005478 344 --YHVVVLDSPGHKDFVP-------------NMIS-GA-------T-------QSDAAILVIDASVGSFEVGMNTAKGLT 393 (694)
Q Consensus 344 --~~v~liDtPGh~~f~~-------------~~i~-~~-------~-------~aD~aILVVDa~~g~~e~~~~~~~~qt 393 (694)
.+++++||||.-+++. .... ++ + ..+++|+.+-.+.- ++.+..
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-------~l~~~D 152 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-------GLKPLD 152 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-------CCCHHH
Confidence 4688999999655322 1111 11 1 16789999875431 134566
Q ss_pred HHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccc
Q 005478 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (694)
Q Consensus 394 ~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~ 441 (694)
.+.+.-+.. .+. +|-||-|.|... .+.+..+++.+.+.+....+
T Consensus 153 Ie~Mk~ls~-~vN-lIPVI~KaD~lT--~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 153 IEAMKRLSK-RVN-LIPVIAKADTLT--DDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHhc-ccC-eeeeeeccccCC--HHHHHHHHHHHHHHHHHhCC
Confidence 555544332 233 788999999874 56677788888888766543
No 370
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=97.93 E-value=3.4e-06 Score=58.27 Aligned_cols=29 Identities=34% Similarity=0.752 Sum_probs=23.6
Q ss_pred CcceeecccccCCCCCcccccccCCCCCc
Q 005478 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (694)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~~~~ 76 (694)
.|.|.|+.|+|.|..+...|.|||++|.+
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 46799999999999999999999999853
No 371
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.93 E-value=6.6e-05 Score=83.54 Aligned_cols=65 Identities=28% Similarity=0.550 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCccc----hHHHHHh--hcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHKD----FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~~----f~~~~i~--~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVVVNK 414 (694)
.++.++||||||... ....+.. .+..+|.++||+||..|- .....+... ..+++. -+++||
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq----------~a~~~a~~F~~~~~~~--g~IlTK 248 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ----------AAEAQAKAFKDSVDVG--SVIITK 248 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh----------hHHHHHHHHHhccCCc--EEEEEC
Confidence 367899999999543 3333322 234588999999998651 112222222 234544 577999
Q ss_pred cccc
Q 005478 415 MDAV 418 (694)
Q Consensus 415 ~Dlv 418 (694)
+|..
T Consensus 249 lD~~ 252 (429)
T TIGR01425 249 LDGH 252 (429)
T ss_pred ccCC
Confidence 9975
No 372
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.90 E-value=6.6e-05 Score=74.49 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=44.7
Q ss_pred eEEEEEeCCCccc------hHHHHHhhcccCC---EEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 344 YHVVVLDSPGHKD------FVPNMISGATQSD---AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 344 ~~v~liDtPGh~~------f~~~~i~~~~~aD---~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
..+.++|+||+.+ ..++.+..+.+-+ ++++++|+.= -.+..++-.-....+..+..+.+|+ |=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf---~vD~~KfiSG~lsAlsAMi~lE~P~-INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF---LVDSTKFISGCLSALSAMISLEVPH-INVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch---hhhHHHHHHHHHHHHHHHHHhcCcc-hhhhhH
Confidence 4688999999544 5677777776633 5677777642 1111111122233444555688995 789999
Q ss_pred ccccc
Q 005478 415 MDAVQ 419 (694)
Q Consensus 415 ~Dlv~ 419 (694)
||+..
T Consensus 174 MDLlk 178 (273)
T KOG1534|consen 174 MDLLK 178 (273)
T ss_pred HHHhh
Confidence 99985
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.89 E-value=5.7e-05 Score=75.81 Aligned_cols=67 Identities=24% Similarity=0.426 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCCccchHHH----HH--hhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 342 KNYHVVVLDSPGHKDFVPN----MI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~----~i--~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
++..++||||||...+... +. ......+-++||++|+.+. ............+++.. +++||+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~---------~~~~~~~~~~~~~~~~~--lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ---------EDLEQALAFYEAFGIDG--LILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG---------HHHHHHHHHHHHSSTCE--EEEEST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh---------HHHHHHHHHhhcccCce--EEEEee
Confidence 4578999999995543322 21 1223588999999998752 33445555666678874 458999
Q ss_pred cccc
Q 005478 416 DAVQ 419 (694)
Q Consensus 416 Dlv~ 419 (694)
|...
T Consensus 151 Det~ 154 (196)
T PF00448_consen 151 DETA 154 (196)
T ss_dssp TSSS
T ss_pred cCCC
Confidence 9764
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.89 E-value=3.9e-05 Score=72.60 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=53.4
Q ss_pred HHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccchhhHhHHHHhhccch
Q 005478 359 PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 436 (694)
Q Consensus 359 ~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l 436 (694)
+.....+..+|++|+|+|++.+. ..+..+...++... +.| +|+|+||+|+++ ++....+ ...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~--------~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~--~~~~~~~----~~~~ 67 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL--------LFRPPDLERYVKEVDPRKK-NILLLNKADLLT--EEQRKAW----AEYF 67 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc--------ccCCHHHHHHHHhccCCCc-EEEEEechhcCC--HHHHHHH----HHHH
Confidence 44567788999999999998763 12334455555555 666 899999999974 2222222 2333
Q ss_pred hcccccCCCceEEEeecccCCC
Q 005478 437 RSCGFKDASLTWIPLSALENQN 458 (694)
Q Consensus 437 ~~~g~~~~~v~~IpvSA~~G~n 458 (694)
+..+ ..++++||+++.+
T Consensus 68 ~~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEG-----IVVVFFSALKENA 84 (141)
T ss_pred HhcC-----CeEEEEEecCCCc
Confidence 3333 3579999999886
No 375
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.88 E-value=1.8e-05 Score=85.54 Aligned_cols=57 Identities=32% Similarity=0.410 Sum_probs=43.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
....++.|+|.+|+|||||||+|++.....+ .+.+|+|..........
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~------------------------------s~~PG~Tk~~q~i~~~~-- 177 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT------------------------------SNRPGTTKGIQWIKLDD-- 177 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceee------------------------------CCCCceecceEEEEcCC--
Confidence 3457899999999999999999996544322 22378888877766444
Q ss_pred eEEEEEeCCC
Q 005478 344 YHVVVLDSPG 353 (694)
Q Consensus 344 ~~v~liDtPG 353 (694)
.+.|+||||
T Consensus 178 -~i~LlDtPG 186 (322)
T COG1161 178 -GIYLLDTPG 186 (322)
T ss_pred -CeEEecCCC
Confidence 389999999
No 376
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.87 E-value=0.00016 Score=70.62 Aligned_cols=67 Identities=24% Similarity=0.468 Sum_probs=42.0
Q ss_pred CCeEEEEEeCCCccchHHHHHhh------cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISG------ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~------~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
.++.++|+||||...+....+.. +...|.++||+|+..+. ........+....++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 45678999999975332222221 23489999999996531 2223333444556754 5677999
Q ss_pred cccc
Q 005478 416 DAVQ 419 (694)
Q Consensus 416 Dlv~ 419 (694)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9764
No 377
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.84 E-value=2.2e-05 Score=77.96 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=42.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.+++++|.+|+|||||+|+|+......... .........+|+|.+.....+.. .+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~----------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL----------------------KDLLTTSPIPGTTLDLIKIPLGN---GK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc----------------------ccccccCCCCCeeeeeEEEecCC---CC
Confidence 569999999999999999999642211000 00012233478888877666532 58
Q ss_pred EEEeCCCc
Q 005478 347 VVLDSPGH 354 (694)
Q Consensus 347 ~liDtPGh 354 (694)
.|+||||.
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999994
No 378
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.84 E-value=0.00013 Score=74.72 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=53.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
.+...|+|+|++++|||||+|+|++....+. + ........+|+-+-...... ..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~----------------------~--~~~~~~~T~gi~~~~~~~~~-~~~ 59 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD----------------------V--MDTSQQTTKGIWMWSVPFKL-GKE 59 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE----------------------e--cCCCCCCccceEEEeccccC-CCc
Confidence 3556799999999999999999996421110 0 00001112343322111110 245
Q ss_pred eEEEEEeCCCccch------HHHHHhhccc--CCEEEEEEecCC
Q 005478 344 YHVVVLDSPGHKDF------VPNMISGATQ--SDAAILVIDASV 379 (694)
Q Consensus 344 ~~v~liDtPGh~~f------~~~~i~~~~~--aD~aILVVDa~~ 379 (694)
..++|+||||..+. ....+.++.. +|++|+.++...
T Consensus 60 ~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 60 HAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred ceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 78999999995432 2233444444 899999998864
No 379
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.84 E-value=2.3e-05 Score=74.11 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~ 289 (694)
+++++|.+|+|||||+|+|+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999853
No 380
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.83 E-value=7.1e-05 Score=70.66 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=101.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
-.++|+++|.+-.|||||+-...+.... ..-+...|+..--...++..-..
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~d-----------------------------e~~~q~~GvN~mdkt~~i~~t~I 69 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYD-----------------------------EEYTQTLGVNFMDKTVSIRGTDI 69 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhH-----------------------------HHHHHHhCccceeeEEEecceEE
Confidence 4688999999999999998777632110 00011233333222333334455
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcC---CCcEEEEEeccccc-cc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAV-QY 420 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg---ip~iIVVVNK~Dlv-~~ 420 (694)
.+.|||..|+++|....--+...+-+++++.|-+.... .....+..+.++.++ +| |+|.+|-|.. ..
T Consensus 70 sfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T-------LnSi~~WY~QAr~~NktAiP--ilvGTKyD~fi~l 140 (205)
T KOG1673|consen 70 SFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST-------LNSIKEWYRQARGLNKTAIP--ILVGTKYDLFIDL 140 (205)
T ss_pred EEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH-------HHHHHHHHHHHhccCCccce--EEeccchHhhhcC
Confidence 68899999999988766556667778889999886531 134456666676655 45 7899999964 33
Q ss_pred chhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 421 ~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
+.+..+.+..+-+.+.+-+. .+.+++|+-...|+.+
T Consensus 141 p~e~Q~~I~~qar~YAk~mn-----AsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 141 PPELQETISRQARKYAKVMN-----ASLFFCSTSHSINVQK 176 (205)
T ss_pred CHHHHHHHHHHHHHHHHHhC-----CcEEEeeccccccHHH
Confidence 34444556666666665554 3568999999999876
No 381
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.82 E-value=3.5e-05 Score=81.93 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=41.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++|+++|.+|+|||||+|+|++..... ....+|+|........ +.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK------------------------------TGNRPGVTKAQQWIKL---GK 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc------------------------------cCCCCCeEEEEEEEEe---CC
Confidence 46789999999999999999999532211 1123788887654443 34
Q ss_pred EEEEEeCCCc
Q 005478 345 HVVVLDSPGH 354 (694)
Q Consensus 345 ~v~liDtPGh 354 (694)
.+.|+||||.
T Consensus 167 ~~~l~DtPGi 176 (287)
T PRK09563 167 GLELLDTPGI 176 (287)
T ss_pred cEEEEECCCc
Confidence 6899999995
No 382
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.82 E-value=2.7e-05 Score=76.14 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCCc-cchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHH
Q 005478 351 SPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (694)
Q Consensus 351 tPGh-~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~ 429 (694)
-||| .+.+.++...+..||++++|+|++.+.. ....+.+..+ .+.| +|+|+||+|+.+ ++......
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~--------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~--~~~~~~~~ 68 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS--------SRNPLLEKIL--GNKP-RIIVLNKADLAD--PKKTKKWL 68 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC--------cCChhhHhHh--cCCC-EEEEEehhhcCC--hHHHHHHH
Confidence 3787 4567778888999999999999986531 1112222221 2455 899999999973 22211111
Q ss_pred HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 430 ~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
++++..+ ..++++||+++.|+.+
T Consensus 69 ----~~~~~~~-----~~vi~iSa~~~~gi~~ 91 (171)
T cd01856 69 ----KYFESKG-----EKVLFVNAKSGKGVKK 91 (171)
T ss_pred ----HHHHhcC-----CeEEEEECCCcccHHH
Confidence 2222211 3568999999999976
No 383
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.82 E-value=3.8e-05 Score=83.73 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=55.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC-ccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE---------
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--------- 336 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g-~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~--------- 336 (694)
++++|+|.+|+|||||+++|+.... .+.. +.|+. .+...|+-.-...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-----------------ypftT------i~p~~g~v~v~d~r~d~L~~~~ 59 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-----------------PPFTT------IEPNAGVVNPSDPRLDLLAIYI 59 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-----------------CCCCC------CCCceeEEEechhHHHHHHHHh
Confidence 6799999999999999999996543 2211 11100 0111111100000
Q ss_pred EEEecCCeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCC
Q 005478 337 AYFDSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (694)
Q Consensus 337 ~~~~~~~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~ 379 (694)
..-......+.++|.||... +....+..++.+|++++||++..
T Consensus 60 ~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 60 KPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 00011234689999999543 55677888899999999999864
No 384
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=5.2e-05 Score=82.93 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=43.3
Q ss_pred CeEEEEEeCCCccc----hHHHHHhhc--ccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 343 NYHVVVLDSPGHKD----FVPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 343 ~~~v~liDtPGh~~----f~~~~i~~~--~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
++.++||||||... .+..+...+ ..++.++||+||+.+ .....+.+.....+++.. +++||+|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---------~~d~~~i~~~F~~~~idg--lI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHIDG--IVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---------hHHHHHHHHHhcCCCCCE--EEEEccc
Confidence 46899999999533 233333322 347889999999754 123355555556677774 5689999
Q ss_pred ccc
Q 005478 417 AVQ 419 (694)
Q Consensus 417 lv~ 419 (694)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 763
No 385
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.77 E-value=4e-05 Score=81.01 Aligned_cols=57 Identities=28% Similarity=0.256 Sum_probs=40.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++++++|.+|+|||||+|+|++..... ....+|+|.......+ +.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~ 163 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAK------------------------------VGNRPGVTKGQQWIKL---SD 163 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeecceEEEEe---CC
Confidence 46889999999999999999998432111 1123677776654443 23
Q ss_pred EEEEEeCCCc
Q 005478 345 HVVVLDSPGH 354 (694)
Q Consensus 345 ~v~liDtPGh 354 (694)
.+.|+||||.
T Consensus 164 ~~~l~DtPG~ 173 (276)
T TIGR03596 164 GLELLDTPGI 173 (276)
T ss_pred CEEEEECCCc
Confidence 5899999996
No 386
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.77 E-value=4.8e-05 Score=73.62 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=38.3
Q ss_pred CeEEEEEeCCCccch---HHH-----HHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 343 NYHVVVLDSPGHKDF---VPN-----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 343 ~~~v~liDtPGh~~f---~~~-----~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
...+.|+||||..+- ... ........|.++.|||+.... .+...+-.+..++..-. +|++||
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~---------~~~~~~~~~~~Qi~~ad-~ivlnk 155 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHAN---------QHLDQQTEAQSQIAFAD-RILLNK 155 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhH---------HHhhccHHHHHHHHHCC-EEEEec
Confidence 467899999996432 211 233455689999999987532 11111112233333333 568999
Q ss_pred ccc
Q 005478 415 MDA 417 (694)
Q Consensus 415 ~Dl 417 (694)
+|+
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 995
No 387
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.75 E-value=2.3e-05 Score=75.93 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~ 289 (694)
..++++|+.|+|||||+|+|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999964
No 388
>PRK12288 GTPase RsgA; Reviewed
Probab=97.74 E-value=3.8e-05 Score=83.67 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=39.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEE
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~l 348 (694)
++|+|.+|+|||||+|+|+......+... +... .+.+-+|.......+..+ ..|
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i-------s~~~----------------~rGrHTT~~~~l~~l~~~---~~l 261 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDV-------SDNS----------------GLGQHTTTAARLYHFPHG---GDL 261 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccc-------cCcC----------------CCCcCceeeEEEEEecCC---CEE
Confidence 79999999999999999996533221111 0011 122334555555544333 259
Q ss_pred EeCCCccchH
Q 005478 349 LDSPGHKDFV 358 (694)
Q Consensus 349 iDtPGh~~f~ 358 (694)
+||||...|-
T Consensus 262 iDTPGir~~~ 271 (347)
T PRK12288 262 IDSPGVREFG 271 (347)
T ss_pred EECCCCCccc
Confidence 9999977653
No 389
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.72 E-value=6.3e-05 Score=73.55 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=40.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..++++++|.+|+|||||+++|+..... ......|+|.......++ .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---C
Confidence 3478999999999999999999943211 111225677776655543 4
Q ss_pred EEEEEeCCCc
Q 005478 345 HVVVLDSPGH 354 (694)
Q Consensus 345 ~v~liDtPGh 354 (694)
.+.++||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999995
No 390
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.72 E-value=0.00011 Score=74.24 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=41.7
Q ss_pred CeEEEEEeCCCccch------HHHHHhhcccCCE---EEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005478 343 NYHVVVLDSPGHKDF------VPNMISGATQSDA---AILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 343 ~~~v~liDtPGh~~f------~~~~i~~~~~aD~---aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN 413 (694)
..++.|+|+||+.++ ....++.+...|+ ++.++|+. +.++-..+-....-.+.-+..+..|| |=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~---ycs~p~~~iS~lL~sl~tMl~melph-VNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSH---YCSDPSKFISSLLVSLATMLHMELPH-VNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeece---eeCChHHHHHHHHHHHHHHHhhcccc-hhhhh
Confidence 467899999996553 4455555655554 55556653 22111111122222233344567886 77899
Q ss_pred cccccc
Q 005478 414 KMDAVQ 419 (694)
Q Consensus 414 K~Dlv~ 419 (694)
|+|+..
T Consensus 172 K~Dl~~ 177 (290)
T KOG1533|consen 172 KADLLK 177 (290)
T ss_pred HhHHHH
Confidence 999874
No 391
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.68 E-value=9.9e-05 Score=70.94 Aligned_cols=74 Identities=24% Similarity=0.199 Sum_probs=45.9
Q ss_pred CEEEEEEecCCCccccccccchhHHHHHH-HHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCCCce
Q 005478 369 DAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT 447 (694)
Q Consensus 369 D~aILVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~ 447 (694)
|++|+|+|+..+.. ....... ..+...+.| +|+|+||+|++. ++....+...+.. .. ...
T Consensus 1 Dvvl~VvD~~~p~~--------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~--~~~~~~~~~~~~~----~~----~~~ 61 (155)
T cd01849 1 DVILEVLDARDPLG--------TRSPDIERVLIKEKGKK-LILVLNKADLVP--KEVLRKWLAYLRH----SY----PTI 61 (155)
T ss_pred CEEEEEEeccCCcc--------ccCHHHHHHHHhcCCCC-EEEEEechhcCC--HHHHHHHHHHHHh----hC----Cce
Confidence 78999999987531 1222222 345556777 899999999974 2222222212211 11 135
Q ss_pred EEEeecccCCCccc
Q 005478 448 WIPLSALENQNLVT 461 (694)
Q Consensus 448 ~IpvSA~~G~nI~e 461 (694)
++++||++|.|+.+
T Consensus 62 ii~vSa~~~~gi~~ 75 (155)
T cd01849 62 PFKISATNGQGIEK 75 (155)
T ss_pred EEEEeccCCcChhh
Confidence 79999999999966
No 392
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.68 E-value=1.6e-06 Score=83.96 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=97.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC--
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~-- 343 (694)
..++.|+|.-++|||+++.+.++..-.-..+. .-|+ +.+...+.|+.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRA-----------------------------tIgv--dfalkVl~wdd~t 73 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA-----------------------------TIGV--DFALKVLQWDDKT 73 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHH-----------------------------HHhH--HHHHHHhccChHH
Confidence 35688999999999999999986421100000 0011 11111122222
Q ss_pred -eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc----CCC-cEEEEEecccc
Q 005478 344 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVD-QLIVAVNKMDA 417 (694)
Q Consensus 344 -~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----gip-~iIVVVNK~Dl 417 (694)
.++.|||..|+++|..++.-+...|.++.+|+|.+....+ .+..++.-.+-..+ |-| ++|+..||+|.
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tf------e~~skwkqdldsk~qLpng~Pv~~vllankCd~ 147 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTF------EPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ 147 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccc------cHHHHHHHhccCcccCCCCCcchheeccchhcc
Confidence 4577999999999998888888999999999999865322 12222221111112 222 26888999998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCcccC
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~ 462 (694)
-.+. ..+.-.++..+.++.|| ..|+.+|++.+.|+.+.
T Consensus 148 e~~a---~~~~~~~~d~f~kengf----~gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 148 EKSA---KNEATRQFDNFKKENGF----EGWTETSAKENKNIPEA 185 (229)
T ss_pred ChHh---hhhhHHHHHHHHhccCc----cceeeeccccccChhHH
Confidence 6432 22334566777777787 35799999999999874
No 393
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.67 E-value=5.9e-05 Score=79.76 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=55.7
Q ss_pred CCcc-chHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHH
Q 005478 352 PGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (694)
Q Consensus 352 PGh~-~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~ 430 (694)
|||. +..+.+...+..+|++|+|+||+.+.. ........++ -+.| +|+|+||+|+++ ........+
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~--------~~~~~i~~~l--~~kp-~IiVlNK~DL~~--~~~~~~~~~ 71 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS--------SRNPMIDEIR--GNKP-RLIVLNKADLAD--PAVTKQWLK 71 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC--------CCChhHHHHH--CCCC-EEEEEEccccCC--HHHHHHHHH
Confidence 8875 456677778899999999999986531 1111222222 1455 899999999974 222222222
Q ss_pred hhccchhcccccCCCceEEEeecccCCCccc
Q 005478 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 431 ~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
. ++..+ .+++++||.++.|+..
T Consensus 72 ~----~~~~~-----~~vi~iSa~~~~gi~~ 93 (276)
T TIGR03596 72 Y----FEEKG-----IKALAINAKKGKGVKK 93 (276)
T ss_pred H----HHHcC-----CeEEEEECCCcccHHH
Confidence 2 22222 3579999999999965
No 394
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.67 E-value=9.6e-05 Score=73.41 Aligned_cols=91 Identities=18% Similarity=0.045 Sum_probs=52.8
Q ss_pred hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhc-cc
Q 005478 357 FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG-TF 435 (694)
Q Consensus 357 f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~-~~ 435 (694)
|...+...+..+|++|+|+|+..... ...+.+ .....+.| +|+|+||+|+..... ..+.+...+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~---------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG---------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDK-NLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC---------ccchhH-HHhcCCCc-EEEEEEchhcCCCCC-CHHHHHHHHHHHH
Confidence 56666677788999999999986421 111111 12234556 899999999974221 1111111110 01
Q ss_pred hhcccccCCCceEEEeecccCCCccc
Q 005478 436 LRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 436 l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+..++. ...++++||++|+|+.+
T Consensus 92 ~~~~~~~--~~~i~~vSA~~~~gi~e 115 (190)
T cd01855 92 AAGLGLK--PKDVILISAKKGWGVEE 115 (190)
T ss_pred HhhcCCC--cccEEEEECCCCCCHHH
Confidence 1222221 12579999999999976
No 395
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.67 E-value=7.8e-05 Score=77.48 Aligned_cols=82 Identities=13% Similarity=0.200 Sum_probs=53.9
Q ss_pred hhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhccccc
Q 005478 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (694)
Q Consensus 363 ~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~ 442 (694)
..++++|.+++|+|+..+.+ .+ ......+..+...+++ +|+|+||+|+.+. ... ..+....++..+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~--s~----~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~--~~~---~~~~~~~~~~~g-- 97 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPEL--SL----NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD--EDM---EKEQLDIYRNIG-- 97 (245)
T ss_pred cccccCCEEEEEEECCCCCC--CH----HHHHHHHHHHHHCCCC-EEEEEECcccCCC--HHH---HHHHHHHHHHCC--
Confidence 46788999999999986531 11 2334445556667888 8999999999742 111 111122233334
Q ss_pred CCCceEEEeecccCCCccc
Q 005478 443 DASLTWIPLSALENQNLVT 461 (694)
Q Consensus 443 ~~~v~~IpvSA~~G~nI~e 461 (694)
.+++.+||++|+|+.+
T Consensus 98 ---~~v~~~SAktg~gi~e 113 (245)
T TIGR00157 98 ---YQVLMTSSKNQDGLKE 113 (245)
T ss_pred ---CeEEEEecCCchhHHH
Confidence 4689999999999976
No 396
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.65 E-value=6.5e-05 Score=78.06 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
.++++|++|+|||||+|+|+......+... + ....+.+.+|.+.....+ .+ ..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i-------~----------------~~~~~G~hTT~~~~l~~l--~~--~~ 174 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDI-------S----------------SKLGLGKHTTTHVELFHF--HG--GL 174 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccce-------e----------------ccCCCCCCcCCceEEEEc--CC--cE
Confidence 589999999999999999996432211110 0 001122446666665555 22 37
Q ss_pred EEeCCCccch
Q 005478 348 VLDSPGHKDF 357 (694)
Q Consensus 348 liDtPGh~~f 357 (694)
|+||||...|
T Consensus 175 liDtPG~~~~ 184 (245)
T TIGR00157 175 IADTPGFNEF 184 (245)
T ss_pred EEeCCCcccc
Confidence 9999996553
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.64 E-value=6.8e-05 Score=79.07 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEE
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~ 347 (694)
..+++|+.|+|||||+|+|......-+ ...+...++ .+-+|.......|..++ .
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t-------~eIS~~~~r----------------GkHTTt~~~l~~l~~gG---~ 219 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKT-------GEISEKLGR----------------GRHTTTHVELFPLPGGG---W 219 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhh-------hhhcccCCC----------------CCCccceEEEEEcCCCC---E
Confidence 588999999999999999985322111 111111222 23456655555555444 6
Q ss_pred EEeCCCccch
Q 005478 348 VLDSPGHKDF 357 (694)
Q Consensus 348 liDtPGh~~f 357 (694)
|+||||...|
T Consensus 220 iiDTPGf~~~ 229 (301)
T COG1162 220 IIDTPGFRSL 229 (301)
T ss_pred EEeCCCCCcc
Confidence 8999997665
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00021 Score=78.36 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~ 289 (694)
.-.++++|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999854
No 399
>PRK12289 GTPase RsgA; Reviewed
Probab=97.62 E-value=6.2e-05 Score=82.15 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~ 290 (694)
.++|+|++|+|||||+|+|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 38999999999999999999543
No 400
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.61 E-value=0.00021 Score=72.49 Aligned_cols=65 Identities=29% Similarity=0.485 Sum_probs=50.9
Q ss_pred CeEEEEEeC-CCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 343 NYHVVVLDS-PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 343 ~~~v~liDt-PGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
.+.+.++|| +|.+.|.+-++ ..+|.+|.|+|.+... ....++...+...+|++++.+|+||+|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~s--------l~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYKS--------LRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccccc---cCCCEEEEEeCCcHHH--------HHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 467999999 67777766554 5689999999988542 24556677888999988899999999853
No 401
>PRK12289 GTPase RsgA; Reviewed
Probab=97.60 E-value=0.00019 Score=78.42 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=54.3
Q ss_pred hcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccC
Q 005478 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (694)
Q Consensus 364 ~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~ 443 (694)
.++++|.+++|+|+..+.+. ..+..+.+..+...++| +|+|+||+|++. .+..+.+ ...+..+|+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~------~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~--~~~~~~~----~~~~~~~g~-- 150 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD------PWQLSRFLVKAESTGLE-IVLCLNKADLVS--PTEQQQW----QDRLQQWGY-- 150 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEEchhcCC--hHHHHHH----HHHHHhcCC--
Confidence 36789999999999865321 12334555555667888 899999999984 2222222 223344454
Q ss_pred CCceEEEeecccCCCccc
Q 005478 444 ASLTWIPLSALENQNLVT 461 (694)
Q Consensus 444 ~~v~~IpvSA~~G~nI~e 461 (694)
.++++||++|.|+.+
T Consensus 151 ---~v~~iSA~tg~GI~e 165 (352)
T PRK12289 151 ---QPLFISVETGIGLEA 165 (352)
T ss_pred ---eEEEEEcCCCCCHHH
Confidence 579999999999976
No 402
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.58 E-value=0.00017 Score=76.46 Aligned_cols=84 Identities=24% Similarity=0.260 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecC--
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~-- 342 (694)
.+++++|||-+|+|||||+|+|+..... -++|.| .||+.....++..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-----------------~~NfPF--------------~TIdPn~a~V~v~d~ 67 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-----------------AANFPF--------------CTIDPNEARVEVPDS 67 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-----------------ccCCCc--------------ceeccccceeecCch
Confidence 5689999999999999999999953221 233333 2444333222111
Q ss_pred ---------------CeEEEEEeCCCccc-------hHHHHHhhcccCCEEEEEEecCC
Q 005478 343 ---------------NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (694)
Q Consensus 343 ---------------~~~v~liDtPGh~~-------f~~~~i~~~~~aD~aILVVDa~~ 379 (694)
...++++|++|... +-...++.++.+|+++.||++..
T Consensus 68 Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 68 RFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23589999999443 66777888999999999999865
No 403
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00068 Score=73.32 Aligned_cols=143 Identities=18% Similarity=0.282 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC-
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~- 343 (694)
-.+++-++|..|.|||||+|.|+...-. ..+. ...........+++......++-++
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~-~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~ 77 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLS-GNRE---------------------VPGASERIKETVEIESTKVEIEENGV 77 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhcc-CCcc---------------------cCCcccCccccceeeeeeeeecCCCe
Confidence 3588999999999999999999854100 0000 0111112222334444444444444
Q ss_pred -eEEEEEeCCCccch-------------HHHHH-hh-----------cc--cCCEEEEEEecCCCccccccccchhHHHH
Q 005478 344 -YHVVVLDSPGHKDF-------------VPNMI-SG-----------AT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (694)
Q Consensus 344 -~~v~liDtPGh~~f-------------~~~~i-~~-----------~~--~aD~aILVVDa~~g~~e~~~~~~~~qt~e 395 (694)
.+++++||||..++ +.... .+ .. ..+++|+.|....- ++.+...+
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-------gL~p~Di~ 150 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-------GLKPLDIE 150 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-------CCcHhhHH
Confidence 46889999995552 21111 11 11 36889999976421 13455555
Q ss_pred HHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhccc
Q 005478 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 440 (694)
Q Consensus 396 ~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g 440 (694)
.+.-+. -.+. +|-||-|.|... .+.+..++..+.+.+....
T Consensus 151 ~Mk~l~-~~vN-iIPVI~KaD~lT--~~El~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 151 FMKKLS-KKVN-LIPVIAKADTLT--KDELNQFKKRIRQDIEEHN 191 (366)
T ss_pred HHHHHh-cccc-ccceeeccccCC--HHHHHHHHHHHHHHHHHcC
Confidence 544332 2444 788999999874 5556667777777776544
No 404
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.56 E-value=0.00047 Score=67.64 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
..+.++|+|||+... ......+..+|.+|+|+...... .......+..++..+++ +.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~--------~~~~~~~~~~l~~~~~~-~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSG--------LHDLERAVELVRHFGIP-VGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCccc--------HHHHHHHHHHHHHcCCC-EEEEEeCCCCC
Confidence 578899999997532 24455667899999999987542 23556677778888888 78999999964
No 405
>PRK00098 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00025 Score=75.89 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=53.1
Q ss_pred cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCC
Q 005478 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (694)
Q Consensus 365 ~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~ 444 (694)
++++|.+|+|+|+....+. .....+.+..+...++| +|+|+||+|+.+. .+.... +...++.++
T Consensus 78 aaniD~vllV~d~~~p~~~------~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~-~~~~~~----~~~~~~~~g---- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS------TDLLDRFLVLAEANGIK-PIIVLNKIDLLDD-LEEARE----LLALYRAIG---- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEEhHHcCCC-HHHHHH----HHHHHHHCC----
Confidence 6789999999999764321 12333445556677888 7999999999731 222222 222333344
Q ss_pred CceEEEeecccCCCccc
Q 005478 445 SLTWIPLSALENQNLVT 461 (694)
Q Consensus 445 ~v~~IpvSA~~G~nI~e 461 (694)
++++++||++|.|+.+
T Consensus 142 -~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 142 -YDVLELSAKEGEGLDE 157 (298)
T ss_pred -CeEEEEeCCCCccHHH
Confidence 3689999999999976
No 406
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.52 E-value=3.7e-05 Score=51.22 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.5
Q ss_pred cceeecccccCCCCCcccccccCCC
Q 005478 49 RVWSCAICTYDNEEGMSVCDICGVL 73 (694)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~ 73 (694)
|.|.|+.|++.|......|++|+++
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 4699999999999999999999985
No 407
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.51 E-value=0.00089 Score=75.64 Aligned_cols=53 Identities=30% Similarity=0.465 Sum_probs=42.3
Q ss_pred cCCCcEEEEEeccccc-------ccchhhHhHHHHhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 403 FGVDQLIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 403 lgip~iIVVVNK~Dlv-------~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
||+| ++||++|.|.. +|.+++|+.|...|+.++-..|. ..|.+|.+...|+..
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNLDL 254 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccHHH
Confidence 3567 99999999975 36678889999999999876663 568899998888753
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00023 Score=79.19 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=42.8
Q ss_pred cCCeEEEEEeCCCccchHHH---H---HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 341 SKNYHVVVLDSPGHKDFVPN---M---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~~---~---i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
..+..+.||||+|....... . +.......-.+||+||+.+ .....+.+.....+++.. +++||
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~~--~I~TK 335 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIHG--CIITK 335 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCCE--EEEEe
Confidence 35678999999995442221 1 2222335678899999864 123344455555677774 56899
Q ss_pred ccccc
Q 005478 415 MDAVQ 419 (694)
Q Consensus 415 ~Dlv~ 419 (694)
+|...
T Consensus 336 lDEt~ 340 (420)
T PRK14721 336 VDEAA 340 (420)
T ss_pred eeCCC
Confidence 99763
No 409
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.50 E-value=0.00025 Score=69.91 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=44.1
Q ss_pred CeEEEEEeCCCccchHHH-----HHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005478 343 NYHVVVLDSPGHKDFVPN-----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~-----~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dl 417 (694)
...+.||.+.|..+.... .+......+.+|.|||+..-. .... ....+..++..-. +|++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~--------~~~~-~~~~~~~Qi~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFD--------ELEN-IPELLREQIAFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHG--------GHTT-HCHHHHHHHCT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEecccccc--------cccc-chhhhhhcchhcC-EEEEecccc
Confidence 456889999995443332 223344578999999996521 0111 1122344455544 678999999
Q ss_pred cccchhhHhHHHHhhccc
Q 005478 418 VQYSKDRFDSIKVQLGTF 435 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~ 435 (694)
++.. +.++.+.+.++++
T Consensus 154 ~~~~-~~i~~~~~~ir~l 170 (178)
T PF02492_consen 154 VSDE-QKIERVREMIREL 170 (178)
T ss_dssp HHHH---HHHHHHHHHHH
T ss_pred CChh-hHHHHHHHHHHHH
Confidence 9632 1334444444443
No 410
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.47 E-value=0.0007 Score=64.86 Aligned_cols=59 Identities=20% Similarity=0.383 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
.++.+.|+||||... .....+..||.+|+|+....+ .....+. ...+..-. ++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~-----------D~y~~~k-~~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG-----------DDIQAIK-AGIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch-----------hHHHHhh-hhHhhhcC-EEEEeCCC
Confidence 467899999999643 334467789999999987632 1111111 12223332 78999998
No 411
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.46 E-value=0.00049 Score=60.52 Aligned_cols=73 Identities=23% Similarity=0.363 Sum_probs=52.0
Q ss_pred ceEeEEecC--CCeEeeEEEEeeeeecCCCEEEEec---------CCeeeEEEeeeec----ccccceeccCCceeEEec
Q 005478 498 PICDVLKSQ--HGQVSACGKLEAGALRSGLKVLVLP---------SGEVGTVHSIERD----SQSCSVARAGDNIAVSLQ 562 (694)
Q Consensus 498 ~I~~v~~~~--~G~V~v~GrV~sG~L~~Gd~v~i~P---------~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~ 562 (694)
.|+.+...+ .|.+ +++||.+|+|+.||.|.+.. .....+|..|... ..++++|.|||+|+|.
T Consensus 4 ~v~Ki~~~~~~~g~l-a~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~-- 80 (93)
T cd03700 4 YVTKMVPTPDKGGFI-AFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV-- 80 (93)
T ss_pred EEEeCeECCCCCEEE-EEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--
Confidence 344555545 5666 89999999999999998765 2234667777543 3688999999999886
Q ss_pred cccccccccCcee
Q 005478 563 GIDVSRVMSGGVL 575 (694)
Q Consensus 563 gid~~~i~rG~VL 575 (694)
|++ +++.|++.
T Consensus 81 g~~--~~~~g~~~ 91 (93)
T cd03700 81 GLD--QLKSGTTA 91 (93)
T ss_pred CCc--cCceEeEe
Confidence 542 35566654
No 412
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.43 E-value=0.0002 Score=76.14 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCccc-hHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHH
Q 005478 351 SPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (694)
Q Consensus 351 tPGh~~-f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~ 429 (694)
-|||.. -.+.+...+..+|++|+|+|++.+.. ....+...++. +.| +|+|+||+|+++ ....+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~--------~~~~~l~~~~~--~kp-~iiVlNK~DL~~--~~~~~~~~ 73 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS--------SENPMIDKIIG--NKP-RLLILNKSDLAD--PEVTKKWI 73 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC--------CCChhHHHHhC--CCC-EEEEEEchhcCC--HHHHHHHH
Confidence 488854 45667778889999999999986531 11222222222 556 899999999974 22222222
Q ss_pred HhhccchhcccccCCCceEEEeecccCCCccc
Q 005478 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 430 ~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+++..+ .+++++||.++.|+..
T Consensus 74 ----~~~~~~~-----~~vi~vSa~~~~gi~~ 96 (287)
T PRK09563 74 ----EYFEEQG-----IKALAINAKKGQGVKK 96 (287)
T ss_pred ----HHHHHcC-----CeEEEEECCCcccHHH
Confidence 2222212 3579999999999865
No 413
>PRK13796 GTPase YqeH; Provisional
Probab=97.43 E-value=0.0002 Score=78.85 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=41.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.++.++|.+|+|||||+|+|+...... .+.....+.+|+|.+.....+.. ..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~-------------------------~~~~~~s~~pGTT~~~~~~~l~~---~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE-------------------------KDVITTSRFPGTTLDKIEIPLDD---GS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc-------------------------cceEEecCCCCccceeEEEEcCC---Cc
Confidence 469999999999999999999532100 01112234588998876655432 25
Q ss_pred EEEeCCCcc
Q 005478 347 VVLDSPGHK 355 (694)
Q Consensus 347 ~liDtPGh~ 355 (694)
.|+||||..
T Consensus 213 ~l~DTPGi~ 221 (365)
T PRK13796 213 FLYDTPGII 221 (365)
T ss_pred EEEECCCcc
Confidence 899999963
No 414
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.43 E-value=0.00021 Score=78.47 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
.+|.++|.+|+|||||+|+|+....... +.......+|+|.+.....+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-------------------------~~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-------------------------DVITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-------------------------ceeeecCCCCeEeeEEEEEe---CCCC
Confidence 4799999999999999999996432110 00112234788887664443 2236
Q ss_pred EEEeCCCccchH--HHHH-----hh---cccCCEEEEEEecCCCcccccc
Q 005478 347 VVLDSPGHKDFV--PNMI-----SG---ATQSDAAILVIDASVGSFEVGM 386 (694)
Q Consensus 347 ~liDtPGh~~f~--~~~i-----~~---~~~aD~aILVVDa~~g~~e~~~ 386 (694)
.|+||||..... ..++ .. -.......+.++..+..+..++
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl 256 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGL 256 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceE
Confidence 799999954321 1111 11 1224566677777665554443
No 415
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.42 E-value=0.00027 Score=67.81 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~ 288 (694)
..+++++|.+|+|||||+++|.+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999984
No 416
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00074 Score=74.81 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=43.5
Q ss_pred CCeEEEEEeCCCccc----hHHHHHh---hcc--cCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005478 342 KNYHVVVLDSPGHKD----FVPNMIS---GAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (694)
Q Consensus 342 ~~~~v~liDtPGh~~----f~~~~i~---~~~--~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVV 412 (694)
.++.++||||||... .+..+.. ... ...-.+||+||..+ ..+..+.+.....+++.. +++
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---------~~~~~~~~~~f~~~~~~g--lIl 366 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---------YHHTLTVLKAYESLNYRR--ILL 366 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---------HHHHHHHHHHhcCCCCCE--EEE
Confidence 467899999999642 2222222 211 24478999999876 235555556666778874 568
Q ss_pred ecccccc
Q 005478 413 NKMDAVQ 419 (694)
Q Consensus 413 NK~Dlv~ 419 (694)
||+|-..
T Consensus 367 TKLDEt~ 373 (432)
T PRK12724 367 TKLDEAD 373 (432)
T ss_pred EcccCCC
Confidence 9999753
No 417
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.39 E-value=0.0009 Score=58.98 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=48.1
Q ss_pred cceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCC---------eeeEEEeeeec----ccccceeccCCceeEEec
Q 005478 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---------EVGTVHSIERD----SQSCSVARAGDNIAVSLQ 562 (694)
Q Consensus 497 ~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~---------~~~~VksI~~~----~~~v~~A~aGd~V~l~L~ 562 (694)
..|+.+...+ .|...++|||.+|+|+.||.|++.-.+ ...+|..|... ..++++|.|||+|+|.
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~-- 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK-- 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE--
Confidence 3456666666 434338999999999999999874211 23566677643 4689999999999886
Q ss_pred ccc
Q 005478 563 GID 565 (694)
Q Consensus 563 gid 565 (694)
|++
T Consensus 81 gl~ 83 (94)
T cd04090 81 GID 83 (94)
T ss_pred Ccc
Confidence 654
No 418
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0006 Score=71.76 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=43.5
Q ss_pred CeEEEEEeCCCccc----hHHHHHhh--cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 343 NYHVVVLDSPGHKD----FVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 343 ~~~v~liDtPGh~~----f~~~~i~~--~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
++.+.|+||||... .+..+... ...+|..+||+||+.. ..+..+.+.....+++.. +++||+|
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---------~~d~~~~~~~f~~~~~~~--~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHIDG--IVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---------HHHHHHHHHHhCCCCCCE--EEEEeec
Confidence 57899999999553 33333322 3357889999999753 134445555555677764 5689999
Q ss_pred ccc
Q 005478 417 AVQ 419 (694)
Q Consensus 417 lv~ 419 (694)
...
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 764
No 419
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.34 E-value=0.00031 Score=74.77 Aligned_cols=65 Identities=28% Similarity=0.322 Sum_probs=40.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
..++++|++|+|||||+|+|++......... .....+.+++|.......+... .
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v-----------------------~~~~~~g~~tT~~~~~~~~~~~---~ 215 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEI-----------------------SEKLGRGRHTTTHRELFPLPGG---G 215 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccce-----------------------eccCCCCCcccceEEEEEcCCC---C
Confidence 4699999999999999999996432111000 0011122445665554444332 3
Q ss_pred EEEeCCCccch
Q 005478 347 VVLDSPGHKDF 357 (694)
Q Consensus 347 ~liDtPGh~~f 357 (694)
.|+||||..+|
T Consensus 216 ~liDtPG~~~~ 226 (287)
T cd01854 216 LLIDTPGFREF 226 (287)
T ss_pred EEEECCCCCcc
Confidence 69999998765
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.34 E-value=0.0011 Score=74.38 Aligned_cols=63 Identities=25% Similarity=0.555 Sum_probs=39.3
Q ss_pred eEEEEEeCCCccchHHHH------HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEeccc
Q 005478 344 YHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKMD 416 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~------i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVVVNK~D 416 (694)
..++||||||....-..+ +..+..+|.++||+|+..+. ...+.+... ..+++. -+++||+|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq----------~av~~a~~F~~~l~i~--gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ----------QAKNQAKAFHEAVGIG--GIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH----------HHHHHHHHHHhcCCCC--EEEEeccc
Confidence 479999999955443322 23355689999999998651 222222222 234444 46789999
Q ss_pred cc
Q 005478 417 AV 418 (694)
Q Consensus 417 lv 418 (694)
..
T Consensus 244 ~~ 245 (437)
T PRK00771 244 GT 245 (437)
T ss_pred CC
Confidence 64
No 421
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.00091 Score=73.92 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCccch----HHHHHhhcc--cCC-EEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHKDF----VPNMISGAT--QSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f----~~~~i~~~~--~aD-~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
.++.++||||||.... +..+...+. ..+ -.+||+||+.+. ....+.+.....+++.. +++||
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~---------~~~~~~~~~~~~~~~~~--~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT---------SDVKEIFHQFSPFSYKT--VIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH---------HHHHHHHHHhcCCCCCE--EEEEe
Confidence 5678999999994321 222222222 123 689999998762 34445555555567764 56899
Q ss_pred ccccc
Q 005478 415 MDAVQ 419 (694)
Q Consensus 415 ~Dlv~ 419 (694)
+|-..
T Consensus 322 lDet~ 326 (388)
T PRK12723 322 LDETT 326 (388)
T ss_pred ccCCC
Confidence 99753
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=97.29 E-value=0.001 Score=74.45 Aligned_cols=65 Identities=28% Similarity=0.492 Sum_probs=38.9
Q ss_pred CCeEEEEEeCCCccc----hHHHH--HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~~----f~~~~--i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVVVNK 414 (694)
.++.++|+||||... ....+ +..+..++.++||+|+..+ ....+.+... ..+++. -+++||
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g----------q~av~~a~~F~~~~~i~--giIlTK 249 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG----------QDAVNTAKAFNEALGLT--GVILTK 249 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH----------HHHHHHHHHHHhhCCCC--EEEEeC
Confidence 457899999999432 22222 1223468889999999754 1222332222 245554 457799
Q ss_pred cccc
Q 005478 415 MDAV 418 (694)
Q Consensus 415 ~Dlv 418 (694)
+|-.
T Consensus 250 lD~~ 253 (433)
T PRK10867 250 LDGD 253 (433)
T ss_pred ccCc
Confidence 9954
No 423
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00054 Score=74.82 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=39.2
Q ss_pred CeEEEEEeCCCccch----HHHHHhh--cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005478 343 NYHVVVLDSPGHKDF----VPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (694)
Q Consensus 343 ~~~v~liDtPGh~~f----~~~~i~~--~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~D 416 (694)
++.++||||||...+ +..+... ...++.++||+++... ..+..+.+.....+++. -+++||+|
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~---------~~d~~~i~~~f~~l~i~--glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK---------SADVMTILPKLAEIPID--GFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc---------HHHHHHHHHhcCcCCCC--EEEEEccc
Confidence 578999999996433 3332222 2346788889887542 12333333334456666 35689999
Q ss_pred cc
Q 005478 417 AV 418 (694)
Q Consensus 417 lv 418 (694)
..
T Consensus 354 ET 355 (407)
T PRK12726 354 ET 355 (407)
T ss_pred CC
Confidence 75
No 424
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00082 Score=76.29 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~ 289 (694)
..-.|+|+|+.|+|||||+..|...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 425
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.25 E-value=0.0017 Score=70.16 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=53.2
Q ss_pred CeEEEEEeCCCccchHHH--------HHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 343 NYHVVVLDSPGHKDFVPN--------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~--------~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
.....+|.|.|..+=.+- -+......|.+|-||||.+.. .......-..-.++..-. +|++||
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~--------~~~~~~~~~~~~Qia~AD-~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFL--------EGLDAIAELAEDQLAFAD-VIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhh--------hhHHHHHHHHHHHHHhCc-EEEEec
Confidence 356889999996553222 222334478899999998742 111101112223344443 678999
Q ss_pred ccccccchhhHhHHHHhhccchhcccccCCCceEEEeec
Q 005478 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 453 (694)
Q Consensus 415 ~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA 453 (694)
.|+++ .+.++.+...++.+- +..+++.++.
T Consensus 155 ~Dlv~--~~~l~~l~~~l~~ln-------p~A~i~~~~~ 184 (323)
T COG0523 155 TDLVD--AEELEALEARLRKLN-------PRARIIETSY 184 (323)
T ss_pred ccCCC--HHHHHHHHHHHHHhC-------CCCeEEEccc
Confidence 99996 334555555554442 3456677665
No 426
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0018 Score=72.68 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCccch-------HHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f-------~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
.++.++||||||...+ +..++.......-++||++++.+. ....+.+.....+++. =+++||
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~---------~~l~~~~~~f~~~~~~--~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY---------EDLKDIYKHFSRLPLD--GLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH---------HHHHHHHHHhCCCCCC--EEEEec
Confidence 3578999999996433 222233222345778999998651 3444555555566664 367899
Q ss_pred cccc
Q 005478 415 MDAV 418 (694)
Q Consensus 415 ~Dlv 418 (694)
+|..
T Consensus 367 lDet 370 (424)
T PRK05703 367 LDET 370 (424)
T ss_pred cccc
Confidence 9975
No 427
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.21 E-value=0.00055 Score=75.22 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=57.9
Q ss_pred ccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhc
Q 005478 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (694)
Q Consensus 354 h~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~ 433 (694)
.++|...+......++++++|+|+.+.. . ....+.. ..++-.++++|+||+|+.... ...+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--~------s~~~~l~---~~~~~~piilV~NK~DLl~k~-~~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--G------SLIPELK---RFVGGNPVLLVGNKIDLLPKS-VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--C------CccHHHH---HHhCCCCEEEEEEchhhCCCC-CCHHHHHHHHH
Confidence 4567665555557889999999986532 1 1111111 222233489999999997532 22334444454
Q ss_pred cchhcccccCCCceEEEeecccCCCccc
Q 005478 434 TFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 434 ~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+++..++.. ..++++||++|.|+.+
T Consensus 118 ~~~k~~g~~~--~~i~~vSAk~g~gv~e 143 (360)
T TIGR03597 118 KRAKELGLKP--VDIILVSAKKGNGIDE 143 (360)
T ss_pred HHHHHcCCCc--CcEEEecCCCCCCHHH
Confidence 5555666532 2478999999999976
No 428
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.21 E-value=0.0018 Score=70.92 Aligned_cols=132 Identities=21% Similarity=0.257 Sum_probs=73.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchh------hhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEE
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK------QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY 338 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~------~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~ 338 (694)
....|++||++|+||||-+.-|.........+ .+..|.-.+.++-+ .|+-. -|+.+.+..-.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk---~Ya~i---------m~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK---TYADI---------MGVPLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH---HHHHH---------hCCceEEecCH
Confidence 36779999999999999999887554311100 00111111111100 01111 12233222211
Q ss_pred E-------ecCCeEEEEEeCCCccchHH----HHHhhcc--cCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCC
Q 005478 339 F-------DSKNYHVVVLDSPGHKDFVP----NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (694)
Q Consensus 339 ~-------~~~~~~v~liDtPGh~~f~~----~~i~~~~--~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi 405 (694)
- ....+.++||||.|+..+-. .+...+. ...-..||++|+.. ....++.+.....+++
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---------~~dlkei~~~f~~~~i 340 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---------YEDLKEIIKQFSLFPI 340 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---------hHHHHHHHHHhccCCc
Confidence 0 12457899999999655433 3322222 34567788998864 2455666677777888
Q ss_pred CcEEEEEecccccc
Q 005478 406 DQLIVAVNKMDAVQ 419 (694)
Q Consensus 406 p~iIVVVNK~Dlv~ 419 (694)
.. +++||+|...
T Consensus 341 ~~--~I~TKlDET~ 352 (407)
T COG1419 341 DG--LIFTKLDETT 352 (407)
T ss_pred ce--eEEEcccccC
Confidence 75 4589999764
No 429
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.20 E-value=0.0027 Score=70.62 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=80.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhh----hhhHHHHHhhhCCCccchhhccccc-----------------
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQ----MHKYEKEAKLQGKGSFAYAWALDES----------------- 322 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~----~~~~~~~~~~~g~gs~~~~~~~d~~----------------- 322 (694)
...++|++||.-.+|||+.+..+.... |..+. |.+ .........|.+..+.+.|..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqAR--IFPRGSGEMMTR-aPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQAR--IFPRGSGEMMTR-SPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhc--cCcCCCcceecc-CCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 456789999999999999999987542 11100 000 000000111222222221110
Q ss_pred -----hhhhccCeEEEEEEEEEecCC---eEEEEEeCCCcc-------------chHHHHHhhcccCCEEEEEEecCCCc
Q 005478 323 -----AEERERGITMTVAVAYFDSKN---YHVVVLDSPGHK-------------DFVPNMISGATQSDAAILVIDASVGS 381 (694)
Q Consensus 323 -----~~Er~~GiTi~~~~~~~~~~~---~~v~liDtPGh~-------------~f~~~~i~~~~~aD~aILVVDa~~g~ 381 (694)
......|.|+......+..++ .+..|+|.||.. ..+...-.++.+++++||+|--..-.
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 111234666655555544433 568899999932 23444556778899999998422111
Q ss_pred cccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005478 382 FEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 382 ~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~ 420 (694)
.| ....-.....+.-+|.. .|+|++|+|+++.
T Consensus 463 AE------RSnVTDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 463 AE------RSIVTDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred hh------hhhHHHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 00 11222333445556766 7999999999863
No 430
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.19 E-value=0.001 Score=70.72 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=52.0
Q ss_pred cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCC
Q 005478 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (694)
Q Consensus 365 ~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~ 444 (694)
+..+|.+|+|+|+..+.+. + .....++..+...++| +|+|+||+|+.+. ..... .......++
T Consensus 76 ~anvD~vllV~d~~~p~~s-----~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~--~~~~~----~~~~~~~~g---- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN-----P-RLLDRYLVAAEAAGIE-PVIVLTKADLLDD--EEEEL----ELVEALALG---- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC-----H-HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh--HHHHH----HHHHHHhCC----
Confidence 6789999999999876311 1 2334455566777888 8999999999742 11111 111112233
Q ss_pred CceEEEeecccCCCccc
Q 005478 445 SLTWIPLSALENQNLVT 461 (694)
Q Consensus 445 ~v~~IpvSA~~G~nI~e 461 (694)
.+++++||++|.|+.+
T Consensus 139 -~~v~~vSA~~g~gi~~ 154 (287)
T cd01854 139 -YPVLAVSAKTGEGLDE 154 (287)
T ss_pred -CeEEEEECCCCccHHH
Confidence 4789999999999865
No 431
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.16 E-value=0.0017 Score=72.71 Aligned_cols=65 Identities=25% Similarity=0.445 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCccch----HHHH--HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEec
Q 005478 342 KNYHVVVLDSPGHKDF----VPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNK 414 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f----~~~~--i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVVVNK 414 (694)
.++.++|+||||.... +..+ +.....+|.++||+|+..+ ....+++... ..+++. =+++||
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg----------q~~~~~a~~f~~~v~i~--giIlTK 248 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG----------QDAVNTAKTFNERLGLT--GVVLTK 248 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch----------HHHHHHHHHHHhhCCCC--EEEEeC
Confidence 4577999999995332 2222 2224458999999999754 1233333322 346665 356999
Q ss_pred cccc
Q 005478 415 MDAV 418 (694)
Q Consensus 415 ~Dlv 418 (694)
+|..
T Consensus 249 lD~~ 252 (428)
T TIGR00959 249 LDGD 252 (428)
T ss_pred ccCc
Confidence 9954
No 432
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.16 E-value=0.00052 Score=72.15 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=47.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCC
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
....+|-|+|-||+|||||+|++......... ....-.++|+|+.+....--.+.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k-------------------------~a~vG~~pGVT~~V~~~iri~~r 195 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKK-------------------------AARVGAEPGVTRRVSERIRISHR 195 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhcc-------------------------ceeccCCCCceeeehhheEeccC
Confidence 35688999999999999999999754333221 11122358999998875544566
Q ss_pred eEEEEEeCCC
Q 005478 344 YHVVVLDSPG 353 (694)
Q Consensus 344 ~~v~liDtPG 353 (694)
..+.++||||
T Consensus 196 p~vy~iDTPG 205 (335)
T KOG2485|consen 196 PPVYLIDTPG 205 (335)
T ss_pred CceEEecCCC
Confidence 6799999999
No 433
>PRK12288 GTPase RsgA; Reviewed
Probab=97.15 E-value=0.0013 Score=71.92 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=51.7
Q ss_pred cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCC
Q 005478 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (694)
Q Consensus 365 ~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~ 444 (694)
++++|.+++|.+.... +. + ......+.++...++| +|+|+||+|+++.. ....+. ++...+..++
T Consensus 118 aANvD~vlIV~s~~p~-~s--~----~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~--~~~~~~-~~~~~y~~~g---- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LS--L----NIIDRYLVACETLGIE-PLIVLNKIDLLDDE--GRAFVN-EQLDIYRNIG---- 182 (347)
T ss_pred EEEccEEEEEEeCCCC-CC--H----HHHHHHHHHHHhcCCC-EEEEEECccCCCcH--HHHHHH-HHHHHHHhCC----
Confidence 5789999999887532 11 1 2333445566778888 78999999997521 111111 2222233344
Q ss_pred CceEEEeecccCCCccc
Q 005478 445 SLTWIPLSALENQNLVT 461 (694)
Q Consensus 445 ~v~~IpvSA~~G~nI~e 461 (694)
.+++++||++++|+.+
T Consensus 183 -~~v~~vSA~tg~Gide 198 (347)
T PRK12288 183 -YRVLMVSSHTGEGLEE 198 (347)
T ss_pred -CeEEEEeCCCCcCHHH
Confidence 4789999999999976
No 434
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.14 E-value=0.0087 Score=65.72 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g 291 (694)
..+=|++||++-+||||++.++.....
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~V 42 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLV 42 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhc
Confidence 346699999999999999999986543
No 435
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.10 E-value=0.0032 Score=69.93 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=57.6
Q ss_pred eEEEEEEEEEec-CCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCc---cccccccchhHHHHHHHHHHH---
Q 005478 330 ITMTVAVAYFDS-KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRS--- 402 (694)
Q Consensus 330 iTi~~~~~~~~~-~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~---~e~~~~~~~~qt~e~l~ll~~--- 402 (694)
.|.-+....|.. .+..+.|+|+.|++.-.+.|+..+...+++|+||+.+.-. +|..- .....+-+.+...
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~---~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPN---TNRLHESLNLFESICN 297 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTT---SBHHHHHHHHHHHHHT
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccch---HHHHHHHHHHHHHHHh
Confidence 344455566777 8999999999999988889999999999999999976421 11111 1223333433332
Q ss_pred ---cCCCcEEEEEeccccc
Q 005478 403 ---FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 403 ---lgip~iIVVVNK~Dlv 418 (694)
+.-.++||++||+|+.
T Consensus 298 ~~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 298 NPWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp SGGGTTSEEEEEEE-HHHH
T ss_pred CcccccCceEEeeecHHHH
Confidence 2223499999999986
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.07 E-value=0.0034 Score=71.09 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=39.6
Q ss_pred cCCeEEEEEeCCCccchHH---H---HHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005478 341 SKNYHVVVLDSPGHKDFVP---N---MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (694)
Q Consensus 341 ~~~~~v~liDtPGh~~f~~---~---~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK 414 (694)
..++.+.+|||+|...... . ++.......-.+||+|+..+ .....+.+......++. -+++||
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~---------~~~l~~i~~~f~~~~~~--g~IlTK 400 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH---------GDTLNEVVQAYRGPGLA--GCILTK 400 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc---------HHHHHHHHHHhccCCCC--EEEEeC
Confidence 3456799999999332211 1 12222223447899999865 12334445555556665 356899
Q ss_pred cccc
Q 005478 415 MDAV 418 (694)
Q Consensus 415 ~Dlv 418 (694)
+|-.
T Consensus 401 lDet 404 (484)
T PRK06995 401 LDEA 404 (484)
T ss_pred CCCc
Confidence 9965
No 437
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.07 E-value=0.0033 Score=73.28 Aligned_cols=177 Identities=18% Similarity=0.284 Sum_probs=119.2
Q ss_pred EEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe-cccccccchhhH
Q 005478 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRF 425 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN-K~Dlv~~~~e~~ 425 (694)
.=-|+-|..+-+...+..+...+.-+=|+.+.-| +.+...+.++...+. +|+++| |++. .
T Consensus 390 ikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG----------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~-----~-- 450 (587)
T TIGR00487 390 LKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG----------GITETDISLASASNA--IIIGFNVRPDA-----T-- 450 (587)
T ss_pred EEeCCcchHHHHHHHHHhhcccCCeEEEEEeecC----------CCchhhHHHHHhcCC--EEEEEecCCCH-----H--
Confidence 3458888888888888888777888888888765 355666666766653 577777 3331 1
Q ss_pred hHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh----hccCCCCCCCCCCcccceEe
Q 005478 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPICD 501 (694)
Q Consensus 426 ~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L----~~l~~~~~~~~~pl~~~I~~ 501 (694)
.....+..+ +.++.-+ =|.+ |++.+ ..+.+|......--...|..
T Consensus 451 ------~~~~a~~~~-----v~i~~~~-----iIY~---------------l~d~~~~~~~~~~~~~~~~~~~g~a~v~~ 499 (587)
T TIGR00487 451 ------AKNVAEAEN-----VDIRYYS-----VIYK---------------LIDEIRAAMKGMLDPEYEEEIIGQAEVRQ 499 (587)
T ss_pred ------HHHHHHHcC-----CeEEEeC-----hHHH---------------HHHHHHHHHHhccCcceeeEeeeeEEEEE
Confidence 111122222 2222111 0111 33333 33333332222223455678
Q ss_pred EEecC-CCeEeeEEEEeeeeecCCCEEEEecCCe---eeEEEeeeecccccceeccCCceeEEeccccccccccCceee
Q 005478 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (694)
Q Consensus 502 v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~ 576 (694)
+|+.+ .|.+ +..+|..|+|+.|..+.+...+. ..+|.||++++.++.++..|+-|+|.+.+. .+++.||+|-
T Consensus 500 vf~~~~~~~i-aG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 575 (587)
T TIGR00487 500 VFNVPKIGNI-AGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIE 575 (587)
T ss_pred EEecCCCCEE-EEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEE
Confidence 99987 7888 88899999999999999998776 467999999999999999999999999875 6788999884
No 438
>PRK00098 GTPase RsgA; Reviewed
Probab=97.05 E-value=0.00077 Score=72.12 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~ 289 (694)
..++++|++|+|||||+|+|++.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999854
No 439
>PRK01889 GTPase RsgA; Reviewed
Probab=97.05 E-value=0.0018 Score=70.97 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=53.4
Q ss_pred cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCC
Q 005478 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (694)
Q Consensus 365 ~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~ 444 (694)
++++|.+++|+++... |. .......+..+...|++ .+||+||+|+++. .+ ...+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~-~~------~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~-~~---~~~~~~~~~--~~----- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FN------LRRIERYLALAWESGAE-PVIVLTKADLCED-AE---EKIAEVEAL--AP----- 170 (356)
T ss_pred EEeCCEEEEEEecCCC-CC------hhHHHHHHHHHHHcCCC-EEEEEEChhcCCC-HH---HHHHHHHHh--CC-----
Confidence 5789999999999643 21 12555667777889998 5889999999852 11 122222222 22
Q ss_pred CceEEEeecccCCCccc
Q 005478 445 SLTWIPLSALENQNLVT 461 (694)
Q Consensus 445 ~v~~IpvSA~~G~nI~e 461 (694)
..+++++|+++|.|+.+
T Consensus 171 g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 171 GVPVLAVSALDGEGLDV 187 (356)
T ss_pred CCcEEEEECCCCccHHH
Confidence 34779999999999865
No 440
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.03 E-value=0.0049 Score=66.58 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=38.7
Q ss_pred eEEEEEeCCCccchHHHH--------HhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005478 344 YHVVVLDSPGHKDFVPNM--------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~--------i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~ 415 (694)
...+||.|.|..+-...+ +......+.+|.||||.... .+...+-....++..-. +|++||+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~---------~~~~~~~~~~~Qi~~AD-~IvlnK~ 160 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD---------EQMNQFTIAQSQVGYAD-RILLTKT 160 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhh---------hhccccHHHHHHHHhCC-EEEEecc
Confidence 567899999976543222 11223468999999998642 11111111223333333 6789999
Q ss_pred cccc
Q 005478 416 DAVQ 419 (694)
Q Consensus 416 Dlv~ 419 (694)
|++.
T Consensus 161 Dl~~ 164 (318)
T PRK11537 161 DVAG 164 (318)
T ss_pred ccCC
Confidence 9985
No 441
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.00 E-value=0.0053 Score=59.64 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=46.4
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
.++|+|||+.... .....+..+|.+|+|++..... ...+...+..+...+.+.+.+++|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s--------~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISS--------LRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcch--------HHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999986443 3445567899999999987643 13444556666667777678999999864
No 442
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.99 E-value=0.00064 Score=75.58 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=42.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCe
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
..+.|++||.||+|||++||+|.+.+..- ..+.+|.|-+..+.+++-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVs------------------------------VS~TPGkTKHFQTi~ls~--- 359 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVS------------------------------VSSTPGKTKHFQTIFLSP--- 359 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceee------------------------------eecCCCCcceeEEEEcCC---
Confidence 37899999999999999999999654322 223377777666665443
Q ss_pred EEEEEeCCCc
Q 005478 345 HVVVLDSPGH 354 (694)
Q Consensus 345 ~v~liDtPGh 354 (694)
.+.|.||||.
T Consensus 360 ~v~LCDCPGL 369 (562)
T KOG1424|consen 360 SVCLCDCPGL 369 (562)
T ss_pred CceecCCCCc
Confidence 5889999994
No 443
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.00076 Score=74.05 Aligned_cols=136 Identities=22% Similarity=0.377 Sum_probs=71.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCc-------cchh-----hhhhHHHHHhhhCCCccchhhccccchhhhccCe
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR-------ITQK-----QMHKYEKEAKLQGKGSFAYAWALDESAEERERGI 330 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g~-------i~~~-----~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~Gi 330 (694)
..++..|.++|--|+||||.++-|...... +.-+ .++.++.-+...+-..|.. .....+.+..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~--~~~~~Pv~Ia--- 171 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS--GTEKDPVEIA--- 171 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC--CCCCCHHHHH---
Confidence 345677999999999999999999754311 1000 0111111111111111100 0000000000
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCcc----chHHHH--HhhcccCCEEEEEEecCCCccccccccchhHHHH--HHHHHHH
Q 005478 331 TMTVAVAYFDSKNYHVVVLDSPGHK----DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE--HAQLIRS 402 (694)
Q Consensus 331 Ti~~~~~~~~~~~~~v~liDtPGh~----~f~~~~--i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e--~l~ll~~ 402 (694)
.-+...+....+.+.|+||+|.. +++.++ +.....+|-++||+||..| |... .-.+-..
T Consensus 172 --k~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G-----------QdA~~~A~aF~e~ 238 (451)
T COG0541 172 --KAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG-----------QDAVNTAKAFNEA 238 (451)
T ss_pred --HHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc-----------hHHHHHHHHHhhh
Confidence 00011122345789999999932 244443 4456679999999999876 3222 1223345
Q ss_pred cCCCcEEEEEeccccc
Q 005478 403 FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 403 lgip~iIVVVNK~Dlv 418 (694)
+++- =|++||+|--
T Consensus 239 l~it--GvIlTKlDGd 252 (451)
T COG0541 239 LGIT--GVILTKLDGD 252 (451)
T ss_pred cCCc--eEEEEcccCC
Confidence 6776 3678999953
No 444
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0021 Score=76.21 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~ 289 (694)
-.|+|+|+.|+||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 46899999999999999999854
No 445
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.91 E-value=0.01 Score=64.25 Aligned_cols=84 Identities=20% Similarity=0.193 Sum_probs=59.0
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCc---cccccccchhHHHHHHHHHHHc----
Q 005478 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRSF---- 403 (694)
Q Consensus 331 Ti~~~~~~~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~---~e~~~~~~~~qt~e~l~ll~~l---- 403 (694)
|.-+....|..++..+.++|.+||+.-.+.++.....++++|+|++.++-. +|... .....|-+.+....
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~---~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDET---TNRMHESLKLFESICNNK 258 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccc---hhHHHHHHHHHHHHhcCc
Confidence 444566678888999999999999998899999999999999999977521 11110 11223333333331
Q ss_pred ---CCCcEEEEEeccccc
Q 005478 404 ---GVDQLIVAVNKMDAV 418 (694)
Q Consensus 404 ---gip~iIVVVNK~Dlv 418 (694)
..+ +|+++||.|+.
T Consensus 259 ~F~~ts-iiLFLNK~DLF 275 (354)
T KOG0082|consen 259 WFANTS-IILFLNKKDLF 275 (354)
T ss_pred ccccCc-EEEEeecHHHH
Confidence 234 89999999987
No 446
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.91 E-value=0.0068 Score=54.57 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=43.7
Q ss_pred EEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCC---cEEEEEec
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNK 414 (694)
Q Consensus 345 ~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip---~iIVVVNK 414 (694)
.++|+|||+..... ....+..+|.+|+|++..... ...+.+.+..++.++.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPS--------IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHH--------HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 79999999965432 344567899999999987642 24566667777777754 67888886
No 447
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.88 E-value=0.0078 Score=71.60 Aligned_cols=178 Identities=17% Similarity=0.227 Sum_probs=120.6
Q ss_pred EEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe-cccccccchhh
Q 005478 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDR 424 (694)
Q Consensus 346 v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN-K~Dlv~~~~e~ 424 (694)
++=-|+-|..+.+...+..+....+-+=|+.+.-| +.+..-+.++...+. +|+.+| +.+. .
T Consensus 546 iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG----------~it~~Dv~lA~~~~a--~ii~Fnv~~~~-----~- 607 (742)
T CHL00189 546 IIKTDTQGSIEAIINSISQIPQKKVQLNILYASLG----------EVTETDVEFASTTNA--EILAFNTNLAP-----G- 607 (742)
T ss_pred EEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC----------CCCHHHHHHHHhcCC--EEEEeeCCCCH-----H-
Confidence 33468999888888888888777788888888765 345556666766663 577777 3321 1
Q ss_pred HhHHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh----hccCCCCCCCCCCcccceE
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPIC 500 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L----~~l~~~~~~~~~pl~~~I~ 500 (694)
+....+..+ +.++.-+ =|.+ |++.+ ..+..|.......-++.|.
T Consensus 608 -------~~~~a~~~~-----v~i~~~~-----iIY~---------------lid~~~~~~~~~l~~~~~~~~~g~a~v~ 655 (742)
T CHL00189 608 -------AKKAARKLN-----IIIKEYQ-----VIYD---------------LLEYIEALMEDLLDPEYKKVPIGEAEVK 655 (742)
T ss_pred -------HHHHHHHcC-----CEEEEeC-----hHHH---------------HHHHHHHHHhhccCceeeeeeceeEEee
Confidence 111111112 2222111 0111 33333 3333333322334456688
Q ss_pred eEEecCCCeEeeEEEEeeeeecCCCEEEEecCCe---eeEEEeeeecccccceeccCCceeEEeccccccccccCceee
Q 005478 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (694)
Q Consensus 501 ~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~ 576 (694)
.+|..+.|.+ +..+|..|.|+.|..++++..+. ..+|.||+++..++.++..|+-|+|.|.+. .+++.||+|-
T Consensus 656 ~vF~~~k~~i-aGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie 731 (742)
T CHL00189 656 TVFPLAKRFV-AGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIH 731 (742)
T ss_pred EEEecCCCEE-EEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEE
Confidence 9999887887 88899999999999999998886 368999999999999999999999999864 5688899884
No 448
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.86 E-value=0.0086 Score=71.81 Aligned_cols=176 Identities=20% Similarity=0.303 Sum_probs=117.8
Q ss_pred EEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe-cccccccchhhHh
Q 005478 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFD 426 (694)
Q Consensus 348 liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVN-K~Dlv~~~~e~~~ 426 (694)
=-|+-|..+-+...+..+..-++-+-|+.+.-| ..+..-+.++...+. +|+.+| +++..
T Consensus 593 kad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG----------~it~~Dv~la~~~~a--~ii~Fnv~~~~~-------- 652 (787)
T PRK05306 593 KADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG----------AITESDVTLAAASNA--IIIGFNVRPDAK-------- 652 (787)
T ss_pred EeCCcchHHHHHHHHHhhcccCCceEEEeeccC----------CCCHHHHHHHHhcCC--EEEEEcCCCCHH--------
Confidence 358888888888888888878888888887765 344555556655553 577776 33311
Q ss_pred HHHHhhccchhcccccCCCceEEEeecccCCCcccCCCCccccccccCcchhhhh----hccCCCCCCCCCCcccceEeE
Q 005478 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPICDV 502 (694)
Q Consensus 427 ~i~~~l~~~l~~~g~~~~~v~~IpvSA~~G~nI~e~~~~~~~~~wy~G~~LL~~L----~~l~~~~~~~~~pl~~~I~~v 502 (694)
+..+.+..+ +.++.-+- |.+ |++.+ ..+..|.....---...|.++
T Consensus 653 -----~~~~a~~~~-----v~i~~~~i-----IY~---------------l~d~~~~~~~~~l~~~~~e~~~g~a~v~~v 702 (787)
T PRK05306 653 -----ARKLAEQEG-----VDIRYYSI-----IYD---------------LIDDVKAAMSGMLEPEYEEEIIGQAEVREV 702 (787)
T ss_pred -----HHHHHHHcC-----CEEEEeCh-----HHH---------------HHHHHHHHHhhccCchhheeeeeeEEEEEE
Confidence 111111111 22221110 111 33333 223333322222234567799
Q ss_pred EecC-CCeEeeEEEEeeeeecCCCEEEEecCCe---eeEEEeeeecccccceeccCCceeEEeccccccccccCceee
Q 005478 503 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (694)
Q Consensus 503 ~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~ 576 (694)
|+.+ .|.| +..+|..|.|+.|..+.+...+. ..+|.||+++..++.++..|+-|+|.|.+. .+++.||+|-
T Consensus 703 F~~~k~~~i-aGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 703 FKVSKVGTI-AGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred EecCCCCeE-EEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 9988 7988 88999999999999999998876 568999999999999999999999999876 5788999984
No 449
>PRK13796 GTPase YqeH; Provisional
Probab=96.83 E-value=0.0032 Score=69.34 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=54.5
Q ss_pred chHHHHHhhcccCC-EEEEEEecCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEecccccccchhhHhHHHHhhc
Q 005478 356 DFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (694)
Q Consensus 356 ~f~~~~i~~~~~aD-~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVVVNK~Dlv~~~~e~~~~i~~~l~ 433 (694)
+|. .++..+...| .+++|||+.+.. ......+. +.. +.+ +|+|+||+|+.... ...+.+.+.+.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~---------~s~~~~L~--~~~~~kp-viLViNK~DLl~~~-~~~~~i~~~l~ 123 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFN---------GSWIPGLH--RFVGNNP-VLLVGNKADLLPKS-VKKNKVKNWLR 123 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCC---------CchhHHHH--HHhCCCC-EEEEEEchhhCCCc-cCHHHHHHHHH
Confidence 444 4677777767 899999987631 11111111 112 445 89999999997521 12233333444
Q ss_pred cchhcccccCCCceEEEeecccCCCccc
Q 005478 434 TFLRSCGFKDASLTWIPLSALENQNLVT 461 (694)
Q Consensus 434 ~~l~~~g~~~~~v~~IpvSA~~G~nI~e 461 (694)
.+.+..|+.. ..++++||++|.|+.+
T Consensus 124 ~~~k~~g~~~--~~v~~vSAk~g~gI~e 149 (365)
T PRK13796 124 QEAKELGLRP--VDVVLISAQKGHGIDE 149 (365)
T ss_pred HHHHhcCCCc--CcEEEEECCCCCCHHH
Confidence 4455556532 2578999999999976
No 450
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.0019 Score=65.47 Aligned_cols=152 Identities=21% Similarity=0.257 Sum_probs=95.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEE
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v 346 (694)
++|.++|+--+|||++.....+...-. +.+-.|....+|.+.. ...=..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn--------------------------eTlflESTski~~d~i----s~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------ETLFLESTSKITRDHI----SNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC--------------------------ceeEeeccCcccHhhh----hhhhcce
Confidence 459999999999999988776532110 1111122222332211 1112458
Q ss_pred EEEeCCCccchHHHHH---hhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCc---EEEEEeccccccc
Q 005478 347 VVLDSPGHKDFVPNMI---SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ---LIVAVNKMDAVQY 420 (694)
Q Consensus 347 ~liDtPGh~~f~~~~i---~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~---iIVVVNK~Dlv~~ 420 (694)
.+||-||+.+|+.... .-.+++-+.|+||||...- ..+.++-|+.+.++..+.+ +=|.+-|+|-...
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-------~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-------MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-------HHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 8999999988765432 2356788999999997642 2356777888888877632 6678999996632
Q ss_pred c--hhhHhHHHHhhccchhcccccCCCceEEEeeccc
Q 005478 421 S--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (694)
Q Consensus 421 ~--~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~ 455 (694)
+ -+.-..+.+....-|+..|...-.+.|..+|...
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 1 1222345556666677777766566677776553
No 451
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.75 E-value=0.0081 Score=65.54 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=48.6
Q ss_pred CeEEEEEeCCCccchHHHHHh-------hcccCCEEEEEEecCCCcc---ccccccch---------hHHHHHH-HHHHH
Q 005478 343 NYHVVVLDSPGHKDFVPNMIS-------GATQSDAAILVIDASVGSF---EVGMNTAK---------GLTREHA-QLIRS 402 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~-------~~~~aD~aILVVDa~~g~~---e~~~~~~~---------~qt~e~l-~ll~~ 402 (694)
....++|.|.|..+....+.. .....|.+|.||||..... ........ ....... .+..+
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q 171 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQ 171 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHH
Confidence 356889999997764332221 2235789999999975310 00000000 0000000 11233
Q ss_pred cCCCcEEEEEecccccccchhhHhHHHHhhccch
Q 005478 403 FGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 436 (694)
Q Consensus 403 lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l 436 (694)
+..-. +|++||+|++. .+.++.+.+.++.+.
T Consensus 172 i~~AD-~IvlnK~Dl~~--~~~l~~~~~~l~~~~ 202 (341)
T TIGR02475 172 LACAD-LVILNKADLLD--AAGLARVRAEIAAEL 202 (341)
T ss_pred HHhCC-EEEEeccccCC--HHHHHHHHHHHHHhC
Confidence 44443 67899999985 556666666665543
No 452
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0053 Score=66.29 Aligned_cols=125 Identities=25% Similarity=0.417 Sum_probs=70.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc-------cchhhhhhHHHHHhhhCCCccchhhccccchhh-hccCeEEEEEE
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR-------ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAV 336 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g~-------i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~E-r~~GiTi~~~~ 336 (694)
++-.|.++|--|+||||.+..|.+.... +..+. |+ +-..|++... ...++.+...+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT---------------FR-agAfDQLkqnA~k~~iP~ygsy 163 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT---------------FR-AGAFDQLKQNATKARVPFYGSY 163 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc---------------cc-cchHHHHHHHhHhhCCeeEecc
Confidence 3445789999999999999999754211 11111 11 1112222221 11223222221
Q ss_pred E-------------EEecCCeEEEEEeCCCcc----chHHHHH--hhcccCCEEEEEEecCCCccccccccchhHHHHHH
Q 005478 337 A-------------YFDSKNYHVVVLDSPGHK----DFVPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (694)
Q Consensus 337 ~-------------~~~~~~~~v~liDtPGh~----~f~~~~i--~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l 397 (694)
. .|.-+++.++|+||.|.. .++.+|+ ..+..+|-+|+|+||+-| |..+..
T Consensus 164 te~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG-----------Qaae~Q 232 (483)
T KOG0780|consen 164 TEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG-----------QAAEAQ 232 (483)
T ss_pred cccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc-----------HhHHHH
Confidence 1 233467899999999932 2455553 345569999999999975 333221
Q ss_pred --HHHHHcCCCcEEEEEeccccc
Q 005478 398 --QLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 398 --~ll~~lgip~iIVVVNK~Dlv 418 (694)
.+-...++- -|++||+|-.
T Consensus 233 a~aFk~~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 233 ARAFKETVDVG--AVILTKLDGH 253 (483)
T ss_pred HHHHHHhhccc--eEEEEecccC
Confidence 112234444 4678999954
No 453
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.72 E-value=0.017 Score=54.47 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=43.5
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEeccccc
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVVNK~Dlv 418 (694)
+.++++|+|+... ......+..+|.+++|++.+... ...+...+..+.. .+..++.+|+|+++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s--------~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTS--------ITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhH--------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 7899999998543 33345677899999999987532 1233444444433 3445588999999743
No 454
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.66 E-value=0.014 Score=61.26 Aligned_cols=85 Identities=18% Similarity=0.326 Sum_probs=45.6
Q ss_pred CeEEEEEeCCCccchH--------HHHHhhcccCCEEEEEEecCCCccccccccchhHHHH-HHHHHHHcCCCcEEEEEe
Q 005478 343 NYHVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE-HAQLIRSFGVDQLIVAVN 413 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~--------~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e-~l~ll~~lgip~iIVVVN 413 (694)
.+..+++.|.|..+-. ..-+..--..|++|-||||.+..+.-.-.++.+..-| +.+++.+ . -+++|
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A---D--~II~N 219 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA---D--RIIMN 219 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh---h--eeeec
Confidence 4668899999976622 2222222347999999999874321111111111111 1122221 1 24689
Q ss_pred cccccccchhhHhHHHHhhcc
Q 005478 414 KMDAVQYSKDRFDSIKVQLGT 434 (694)
Q Consensus 414 K~Dlv~~~~e~~~~i~~~l~~ 434 (694)
|.|++. ++.+..+++.++.
T Consensus 220 KtDli~--~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 220 KTDLVS--EEEVKKLRQRIRS 238 (391)
T ss_pred cccccC--HHHHHHHHHHHHH
Confidence 999995 5555555555544
No 455
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.64 E-value=0.0016 Score=70.48 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~ 340 (694)
..-++.++|+|+|.+|+|||+|||+|......- .-..+|+|..+....
T Consensus 247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~------------------------------vg~~pGvT~smqeV~-- 294 (435)
T KOG2484|consen 247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACN------------------------------VGNVPGVTRSMQEVK-- 294 (435)
T ss_pred cccCcceEeeeecCCCCChhHHHHHHHHhcccc------------------------------CCCCccchhhhhhee--
Confidence 344788999999999999999999998543311 111267777655444
Q ss_pred cCCeEEEEEeCCCc
Q 005478 341 SKNYHVVVLDSPGH 354 (694)
Q Consensus 341 ~~~~~v~liDtPGh 354 (694)
-+..|.|+|.||.
T Consensus 295 -Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 295 -LDKKIRLLDSPGI 307 (435)
T ss_pred -ccCCceeccCCce
Confidence 2456999999994
No 456
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.52 E-value=0.0076 Score=63.85 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=58.7
Q ss_pred cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHhHHHHhhccchhcccccCC
Q 005478 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (694)
Q Consensus 365 ~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l~~~l~~~g~~~~ 444 (694)
+.+.|-+|+|+.+..+.|. ..+..+.|-++...|+. .|||+||+|+++. +.... +++......+||
T Consensus 77 v~n~d~~iiIvs~~~P~~~------~~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~--~~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFN------TNLLDRYLVLAEAGGIE-PVIVLNKIDLLDD--EEAAV--KELLREYEDIGY--- 142 (301)
T ss_pred ccccceEEEEEeccCCCCC------HHHHHHHHHHHHHcCCc-EEEEEEccccCcc--hHHHH--HHHHHHHHhCCe---
Confidence 3448889999999887653 24566777788889998 4778999999963 22221 344455556665
Q ss_pred CceEEEeecccCCCccc
Q 005478 445 SLTWIPLSALENQNLVT 461 (694)
Q Consensus 445 ~v~~IpvSA~~G~nI~e 461 (694)
+++.+|+++++++.+
T Consensus 143 --~v~~~s~~~~~~~~~ 157 (301)
T COG1162 143 --PVLFVSAKNGDGLEE 157 (301)
T ss_pred --eEEEecCcCcccHHH
Confidence 679999999999876
No 457
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=96.49 E-value=0.026 Score=49.03 Aligned_cols=72 Identities=31% Similarity=0.500 Sum_probs=49.5
Q ss_pred EEEEEEEEecC----------CCCccCCCeeeEEEeeeeEEEEEEEEEeeeccccCcccccCCcccCCCCeEEEEEEeCc
Q 005478 587 HLELKVLVLDF----------APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQE 656 (694)
Q Consensus 587 ~f~a~v~vl~~----------~~pi~~G~~~~l~ig~~~~~a~I~~I~~~ld~~tg~~~k~~p~~L~~g~~a~v~l~l~~ 656 (694)
.++.+..+|+. -.||..|..+++.+|+....|+|.++.. + .+++.|.+
T Consensus 3 ~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~--------------------d--~~~v~L~~ 60 (88)
T PF09173_consen 3 ELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVKK--------------------D--MAEVELKK 60 (88)
T ss_dssp EEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEET--------------------T--EEEEEEEE
T ss_pred EEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEEC--------------------C--EEEEEecC
Confidence 45555666652 1689999999999999999999987731 1 46677889
Q ss_pred eEEeecccccCCcceEEE-Ee-CC--cEEEEEEE
Q 005478 657 PVCVEEFSNCRALGRAFL-RS-SG--RTIAVGIV 686 (694)
Q Consensus 657 pi~~e~~~~~~~lgrfiL-r~-~g--~Tvg~G~V 686 (694)
|+|.+..+ |++| |. ++ |.||+|.|
T Consensus 61 Pvc~~~g~------rvaiSRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 61 PVCAEKGE------RVAISRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEE-STTS------EEEEEEEETTSEEEEEEEEE
T ss_pred CeEcCcCC------eeeeehhccCeEEEEEEEeC
Confidence 99999866 7777 43 33 89999986
No 458
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.025 Score=60.28 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~ 289 (694)
....|+++|.-|+|||||++.|...
T Consensus 187 df~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhcc
Confidence 4566899999999999999999854
No 459
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.47 E-value=0.0095 Score=64.37 Aligned_cols=84 Identities=24% Similarity=0.242 Sum_probs=58.1
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCc---cccccccchhHHHHHHHHHHH-----
Q 005478 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRS----- 402 (694)
Q Consensus 331 Ti~~~~~~~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~---~e~~~~~~~~qt~e~l~ll~~----- 402 (694)
|.-+....|..++..+.+||++|++...+.+...+..++++|+|||.+.-. .|... .....+.+.+...
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~---~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES---TNRMQESLNLFDSICNSR 224 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc---chHHHHHHHHHHHHHhCc
Confidence 333444556778899999999999999999999999999999999987521 11110 1122333333322
Q ss_pred --cCCCcEEEEEeccccc
Q 005478 403 --FGVDQLIVAVNKMDAV 418 (694)
Q Consensus 403 --lgip~iIVVVNK~Dlv 418 (694)
.+.| +++++||.|+.
T Consensus 225 ~~~~~p-ill~~NK~D~f 241 (317)
T cd00066 225 WFANTS-IILFLNKKDLF 241 (317)
T ss_pred cccCCC-EEEEccChHHH
Confidence 2456 99999999976
No 460
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.016 Score=62.08 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~ 290 (694)
.++..|.|+|-.|+||||-++-|.+..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 446778999999999999999998654
No 461
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.37 E-value=0.0075 Score=75.98 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.4
Q ss_pred EEEEeCCCCCHHHHHHHH
Q 005478 269 LAIVGHVDSGKSTLSGRL 286 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L 286 (694)
..|+|++++|||||+.+-
T Consensus 114 YlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred EEEECCCCCchhHHHHhC
Confidence 679999999999999776
No 462
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.28 E-value=0.02 Score=63.80 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=25.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCcc
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~~~g~i 293 (694)
....+|+|+|+.++|||||+++|....+..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 346789999999999999999999876554
No 463
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.27 E-value=0.017 Score=63.00 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=58.2
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCC---ccccccccchhHHHHHHHHHHH----c
Q 005478 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEVGMNTAKGLTREHAQLIRS----F 403 (694)
Q Consensus 331 Ti~~~~~~~~~~~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g---~~e~~~~~~~~qt~e~l~ll~~----l 403 (694)
|.-+....|..++..+.+||.+|++.+.+.|...+..++++|+|||.+.- ..|.....-.....+.+..+.. .
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 34444556777888999999999999999999999999999999998852 1111100001122222222221 2
Q ss_pred CCCcEEEEEeccccc
Q 005478 404 GVDQLIVAVNKMDAV 418 (694)
Q Consensus 404 gip~iIVVVNK~Dlv 418 (694)
++| +||++||.|+.
T Consensus 251 ~~p-iil~~NK~D~~ 264 (342)
T smart00275 251 NTS-IILFLNKIDLF 264 (342)
T ss_pred CCc-EEEEEecHHhH
Confidence 446 99999999986
No 464
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.017 Score=65.08 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=67.6
Q ss_pred ccceEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCe---eeEEEeeeecccccceeccCCceeEEecccccccccc
Q 005478 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (694)
Q Consensus 496 ~~~I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~r 571 (694)
...+..+|..+ .|.+ +..+|..|+++.|..+++...+. ..+|.+|+++++++.++.+|+.|+|.+.+ ..+++.
T Consensus 415 ~~~~r~v~~~~k~g~I-aG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~ 491 (509)
T COG0532 415 LAEVRAVFKLPKVGAI-AGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKE 491 (509)
T ss_pred ceEEEEEEEcCCCCeE-EEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCC
Confidence 34567888888 8998 88999999999999999986554 36999999999999999999999999987 567888
Q ss_pred Cceee
Q 005478 572 GGVLC 576 (694)
Q Consensus 572 G~VL~ 576 (694)
||+|-
T Consensus 492 gD~le 496 (509)
T COG0532 492 GDILE 496 (509)
T ss_pred CCEEE
Confidence 99873
No 465
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.00 E-value=0.0029 Score=68.25 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhh
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~ 290 (694)
.++.+.|+|||.+|+|||++||.|....
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcc
Confidence 4678999999999999999999998543
No 466
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.99 E-value=0.065 Score=45.74 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=46.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEecCCeEEEE
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~~~~~~~v~l 348 (694)
+++.|..|+||||+...|...... .|... ..++ .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v----~~~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRV----LLID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeE----EEEC----CEEE
Confidence 678899999999999999843211 11111 1111 7899
Q ss_pred EeCCCccchHHH-HHhhcccCCEEEEEEecCCC
Q 005478 349 LDSPGHKDFVPN-MISGATQSDAAILVIDASVG 380 (694)
Q Consensus 349 iDtPGh~~f~~~-~i~~~~~aD~aILVVDa~~g 380 (694)
+|+|+....... .......+|.++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999996544321 24456679999999998764
No 467
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.95 E-value=0.041 Score=48.73 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=26.4
Q ss_pred eEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCC
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380 (694)
Q Consensus 344 ~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g 380 (694)
+.++|+|+|+..... ....+..+|.+|++++....
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 679999999965332 23556779999999998753
No 468
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.91 E-value=0.043 Score=48.55 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=54.8
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec-ccccceeccCCceeEEeccccccccccCceee
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL~ 576 (694)
|.+....+ .|.+ ++..|.+|+|++||.+..+. ...+|++|... ..++++|.||+.|.|. |++.. -..|+.+.
T Consensus 5 VlE~~~~~g~G~v-atviV~~GtL~~Gd~iv~G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I~--G~~~~-P~aGd~~~ 78 (95)
T cd03702 5 VIESKLDKGRGPV-ATVLVQNGTLKVGDVLVAGT--TYGKVRAMFDENGKRVKEAGPSTPVEIL--GLKGV-PQAGDKFL 78 (95)
T ss_pred EEEEEecCCCCcc-EEEEEEcCeEeCCCEEEEcc--cccEEEEEECCCCCCCCEECCCCcEEEc--CCCCC-CCCCCEEE
Confidence 44555555 7888 89999999999999999984 35699999986 5899999999999874 44311 14466654
No 469
>PRK13695 putative NTPase; Provisional
Probab=95.81 E-value=0.033 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~ 289 (694)
+|+++|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 470
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.80 E-value=0.055 Score=61.48 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=80.7
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE
Q 005478 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (694)
Q Consensus 260 ~~~~~~~~~VaivG~vnaGKSTLi~~L~~~~g~i~~~~~~~~~~~~~~~g~gs~~~~~~~d~~~~Er~~GiTi~~~~~~~ 339 (694)
.+...+.+..-++|..++|||.|++.+++.. ++. ..........++......
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~--~~~-------------------------~~~~~~~~~~avn~v~~~- 470 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRS--MSD-------------------------NNTGTTKPRYAVNSVEVK- 470 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccc--ccc-------------------------ccccCCCCceeeeeeeec-
Confidence 3445667888999999999999999999521 100 000001122222222222
Q ss_pred ecCCeEEEEEeCCCc-cchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEecccc
Q 005478 340 DSKNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDA 417 (694)
Q Consensus 340 ~~~~~~v~liDtPGh-~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVVNK~Dl 417 (694)
...+.+.|-|.+-. .++..+ .-..||++++|+|.+... .| ....+....... ..+| +++|.+|+|+
T Consensus 471 -g~~k~LiL~ei~~~~~~~l~~---ke~~cDv~~~~YDsS~p~---sf----~~~a~v~~~~~~~~~~P-c~~va~K~dl 538 (625)
T KOG1707|consen 471 -GQQKYLILREIGEDDQDFLTS---KEAACDVACLVYDSSNPR---SF----EYLAEVYNKYFDLYKIP-CLMVATKADL 538 (625)
T ss_pred -cccceEEEeecCccccccccC---ccceeeeEEEecccCCch---HH----HHHHHHHHHhhhccCCc-eEEEeecccc
Confidence 34455666666643 112111 116799999999988532 11 222233322222 4556 9999999998
Q ss_pred cccchhhHhHHHHhhccchhcccccCCCceEEEeeccc
Q 005478 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (694)
Q Consensus 418 v~~~~e~~~~i~~~l~~~l~~~g~~~~~v~~IpvSA~~ 455 (694)
-+..+ +..-+..++..++++..+ +++|..+
T Consensus 539 De~~Q----~~~iqpde~~~~~~i~~P----~~~S~~~ 568 (625)
T KOG1707|consen 539 DEVPQ----RYSIQPDEFCRQLGLPPP----IHISSKT 568 (625)
T ss_pred chhhh----ccCCChHHHHHhcCCCCC----eeeccCC
Confidence 64321 122223555666676432 5666653
No 471
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.69 E-value=0.014 Score=52.80 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 005478 267 LNLAIVGHVDSGKSTLSGRLL 287 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~ 287 (694)
++|+++|..++|||+|+.++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred CEEEEECCCChhHHHHHHHHh
Confidence 379999999999999999986
No 472
>CHL00175 minD septum-site determining protein; Validated
Probab=95.47 E-value=0.074 Score=56.18 Aligned_cols=65 Identities=20% Similarity=0.363 Sum_probs=47.0
Q ss_pred CeEEEEEeCCCccchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (694)
Q Consensus 343 ~~~v~liDtPGh~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dl 417 (694)
.+.++|+|||+.... .....+..+|.+|+|++..... ...+...+.++...+.+.+-+|+|+++.
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~~~s--------i~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPEITA--------IRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCChHH--------HHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 578999999986432 3344556799999999877432 2355566677777787667889999974
No 473
>PRK01889 GTPase RsgA; Reviewed
Probab=95.34 E-value=0.018 Score=63.27 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~ 290 (694)
-+++|+|.+|+|||||++.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 469999999999999999999643
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.17 E-value=0.065 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~ 288 (694)
..+.++|+|..|+|||||+.+|+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 345689999999999999999984
No 475
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.07 E-value=0.027 Score=55.35 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=32.7
Q ss_pred CEEEEEEecCCCccccccccchhHHHHHHHH--HHHcCCCcEEEEEecccccccchhhHhHHHHhh
Q 005478 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (694)
Q Consensus 369 D~aILVVDa~~g~~e~~~~~~~~qt~e~l~l--l~~lgip~iIVVVNK~Dlv~~~~e~~~~i~~~l 432 (694)
|++++|+||..+.. ....+.... +...+.| +|+|+||+|+++ ++....+.+.+
T Consensus 1 DvVl~VvDar~p~~--------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~--~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLG--------CRCPQVEEAVLQAGGNKK-LVLVLNKIDLVP--KENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCC--------CCCHHHHHHHHhccCCCC-EEEEEehhhcCC--HHHHHHHHHHH
Confidence 78999999987531 222233333 3334556 899999999984 44444344333
No 476
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=94.90 E-value=0.062 Score=62.76 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=61.3
Q ss_pred eEEecCCCeEeeEEEEeeeeecCCCEEEEecCC-eeeEEEeeeecccccceeccCCceeEEeccccc-cccccCceeec
Q 005478 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDV-SRVMSGGVLCH 577 (694)
Q Consensus 501 ~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~-~~i~rG~VL~~ 577 (694)
.+|+.+.+.+ +..+|..|+|+.|..|. .+.+ ...+|.||+++++++++|.+|+-|+|.|.+... .+++.||+|-.
T Consensus 473 ~vf~~~~~~i-~G~~V~~G~i~~~~~v~-r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSKPAI-VGVEVLTGVIRQGYPLM-KDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCCCeE-EEEEEecCEEecCCeEE-ecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6777766666 78899999999999874 4433 457899999999999999999999999987432 57888999864
No 477
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=94.84 E-value=0.015 Score=56.12 Aligned_cols=28 Identities=29% Similarity=0.834 Sum_probs=25.3
Q ss_pred CCcceeecccccCCCCCcccccccCCCC
Q 005478 47 KPRVWSCAICTYDNEEGMSVCDICGVLR 74 (694)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~ 74 (694)
.-|.|-|+.|||-|+....-|-||+|..
T Consensus 21 Deg~WdCsvCTFrNsAeAfkC~vCdvRK 48 (228)
T KOG4477|consen 21 DEGKWDCSVCTFRNSAEAFKCFVCDVRK 48 (228)
T ss_pred ccCceeeeeeeecchhhhhheeeecccc
Confidence 3467999999999999999999999875
No 478
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=94.80 E-value=0.12 Score=45.73 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=53.4
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCeeeEEEeeeec-ccccceeccCCceeEEeccccccccccCcee
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid~~~i~rG~VL 575 (694)
|.+.-..+ .|.+ ++..|.+|+|++||.+.++ ....+|+++... ...+..|.|++.|.+. |.+. ....|+.+
T Consensus 5 ViE~~~~~g~G~v-atviV~~GtL~~Gd~iv~G--~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~--g~~~-~p~aGd~~ 77 (95)
T cd03701 5 VIESKLDKGRGPV-ATVIVQNGTLKKGDVIVAG--GTYGKIRTMVDENGKALLEAGPSTPVEIL--GLKD-VPKAGDGV 77 (95)
T ss_pred EEEEEecCCCCee-EEEEEEcCeEecCCEEEEC--CccceEEEEECCCCCCccccCCCCCEEEe--eecC-CccCCCEE
Confidence 44555555 7988 8999999999999999998 456789999875 6789999999998554 4421 23445554
No 479
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.68 E-value=0.033 Score=50.61 Aligned_cols=25 Identities=44% Similarity=0.425 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~ 292 (694)
.|+|.|.++||||||.+.|....+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4899999999999999999976543
No 480
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.54 E-value=0.079 Score=55.11 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (694)
Q Consensus 264 ~~~~~VaivG~vnaGKSTLi~~L~~ 288 (694)
--.+||..||..|-|||||+..|.+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFN 64 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFN 64 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhc
Confidence 3468999999999999999999984
No 481
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.37 E-value=0.09 Score=57.34 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=50.9
Q ss_pred EEeCCCc-cchHHHHHhhcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccchhhHh
Q 005478 348 VLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (694)
Q Consensus 348 liDtPGh-~~f~~~~i~~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv~~~~e~~~ 426 (694)
-+|-+++ ..|.+....-+..+|++|-|+||+++.-. -..+..+. ++.+-|-+++|+|+||+|++. .+.++
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgt-----R~~~vE~~--V~~~~gnKkLILVLNK~DLVP--rEv~e 196 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGT-----RCPEVEEA--VLQAHGNKKLILVLNKIDLVP--REVVE 196 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCC-----CChhHHHH--HHhccCCceEEEEeehhccCC--HHHHH
Confidence 3455555 34788888888899999999999987411 01222222 233456577999999999995 45545
Q ss_pred HHHHhhcc
Q 005478 427 SIKVQLGT 434 (694)
Q Consensus 427 ~i~~~l~~ 434 (694)
.+..-|+.
T Consensus 197 ~Wl~YLr~ 204 (435)
T KOG2484|consen 197 KWLVYLRR 204 (435)
T ss_pred HHHHHHHh
Confidence 44444444
No 482
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.35 E-value=0.24 Score=53.82 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCcc
Q 005478 267 LNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (694)
Q Consensus 267 ~~VaivG~vnaGKSTLi~~L~~~~g~i 293 (694)
.+|+|+|.+++|||||+++|....+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~ 189 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTT 189 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 479999999999999999999765543
No 483
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.27 E-value=0.12 Score=56.68 Aligned_cols=29 Identities=41% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (694)
Q Consensus 263 ~~~~~~VaivG~vnaGKSTLi~~L~~~~g 291 (694)
.....+|.++|++|+|||||...|++...
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l 98 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLL 98 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHh
Confidence 34567899999999999999999987654
No 484
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=94.19 E-value=0.33 Score=44.03 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=54.8
Q ss_pred eEeEEecC-CCeEeeEEEEeeeeecCCCEEEEecCCe--eeEEEeeeeccc-----------ccceeccCCceeEEeccc
Q 005478 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE--VGTVHSIERDSQ-----------SCSVARAGDNIAVSLQGI 564 (694)
Q Consensus 499 I~~v~~~~-~G~V~v~GrV~sG~L~~Gd~v~i~P~~~--~~~VksI~~~~~-----------~v~~A~aGd~V~l~L~gi 564 (694)
|.++-..+ .|.+ +.--|..|+|++||.|.++...- ..+||+|...+. .+++|.|..-+-|...|+
T Consensus 5 VlEvk~~~G~G~t-~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~gL 83 (110)
T cd03703 5 VLEVKEEEGLGTT-IDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPDL 83 (110)
T ss_pred EEEEEEcCCCceE-EEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCCC
Confidence 44565566 8988 89999999999999999986643 468999987643 788888777776665555
Q ss_pred cccccccCcee
Q 005478 565 DVSRVMSGGVL 575 (694)
Q Consensus 565 d~~~i~rG~VL 575 (694)
+ .+..|+-|
T Consensus 84 ~--~v~aG~~~ 92 (110)
T cd03703 84 E--KAIAGSPL 92 (110)
T ss_pred c--cccCCCEE
Confidence 3 33556654
No 485
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=0.072 Score=66.02 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.0
Q ss_pred EEEEeCCCCCHHHHHHHH
Q 005478 269 LAIVGHVDSGKSTLSGRL 286 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L 286 (694)
-.|||++|+||||++...
T Consensus 128 y~viG~pgsGKTtal~~s 145 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS 145 (1188)
T ss_pred eEEecCCCCCcchHHhcc
Confidence 568999999999987543
No 486
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=0.16 Score=56.60 Aligned_cols=72 Identities=18% Similarity=0.367 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCccchHHHHHh------hcccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcE--EEEEe
Q 005478 342 KNYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL--IVAVN 413 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~------~~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i--IVVVN 413 (694)
+++.++|+||+|...--...++ -+..+|.+|+|=.|--|. +. ..|.+..-..+....-|+. -++++
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-----ds-v~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-----DS-VDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-----HH-HHHHHHHHHHHhcCCCccccceEEEE
Confidence 5788999999995433222222 245699999997775542 11 1343333333333332332 46799
Q ss_pred cccccc
Q 005478 414 KMDAVQ 419 (694)
Q Consensus 414 K~Dlv~ 419 (694)
|+|.++
T Consensus 539 k~dtv~ 544 (587)
T KOG0781|consen 539 KFDTVD 544 (587)
T ss_pred eccchh
Confidence 999884
No 487
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.26 Score=47.78 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~ 288 (694)
..++|.|.|+||+|||||+..+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 457899999999999999999974
No 488
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.81 E-value=0.061 Score=43.70 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~ 289 (694)
...|.|+.++|||||+.++...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999854
No 489
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.74 E-value=0.059 Score=50.31 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhC
Q 005478 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (694)
Q Consensus 269 VaivG~vnaGKSTLi~~L~~~~g 291 (694)
|.++|++++|||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999996654
No 490
>PRK04004 translation initiation factor IF-2; Validated
Probab=93.73 E-value=0.18 Score=59.14 Aligned_cols=74 Identities=23% Similarity=0.489 Sum_probs=59.3
Q ss_pred eEEecCCCeEeeEEEEeeeeecCCCEEEEecCCe-eeEEEeeeecccccceeccCCceeEEeccccc-cccccCceee
Q 005478 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGE-VGTVHSIERDSQSCSVARAGDNIAVSLQGIDV-SRVMSGGVLC 576 (694)
Q Consensus 501 ~v~~~~~G~V~v~GrV~sG~L~~Gd~v~i~P~~~-~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~-~~i~rG~VL~ 576 (694)
.+|+.+.+.| +..+|..|+|+.|..|. .+.+. ..+|.||+++++++++|.+|+-|+|.|.+... .+++.||+|-
T Consensus 475 ~vf~~~~~~I-aGc~V~~G~i~~~~~v~-r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~ 550 (586)
T PRK04004 475 YVFRQSDPAI-VGVEVLGGTIKPGVPLI-KEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILY 550 (586)
T ss_pred eeEecCCCeE-EEEEEEeCEEecCCEEE-EECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEE
Confidence 6777766666 78899999999999854 33443 47899999999999999999999999986521 4678888874
No 491
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.69 E-value=0.064 Score=50.91 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~ 289 (694)
.|+|+|+.|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 492
>PRK08233 hypothetical protein; Provisional
Probab=93.53 E-value=0.072 Score=51.92 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g 291 (694)
.+.|+|.|.+|+|||||..+|....+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999987654
No 493
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=93.44 E-value=0.23 Score=48.18 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=49.3
Q ss_pred CCeEEEEEeCCCccchHHHHHhh--cccCCEEEEEEecCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (694)
Q Consensus 342 ~~~~v~liDtPGh~~f~~~~i~~--~~~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVVNK~Dlv 418 (694)
..+.+.|+|||+... ...... +..+|.+|+|+...... ...+.+.+..++..+++.+-+++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s--------~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVA--------LDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhh--------HHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 468899999999632 222222 35789999999877532 35677888889999998667899999853
No 494
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.072 Score=52.72 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~ 292 (694)
+|+|+|++||||||+...|....+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999977544
No 495
>PRK08118 topology modulation protein; Reviewed
Probab=93.36 E-value=0.072 Score=52.04 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~~g~ 292 (694)
+|.|+|++|+|||||...|....+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999866543
No 496
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.32 E-value=0.084 Score=53.21 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (694)
Q Consensus 265 ~~~~VaivG~vnaGKSTLi~~L~~~~g 291 (694)
+...|+|+|++|+|||||+++|.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999987643
No 497
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=93.31 E-value=0.36 Score=38.55 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=24.6
Q ss_pred Hhhcc-cCCEEEEEEecCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEeccc
Q 005478 362 ISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMD 416 (694)
Q Consensus 362 i~~~~-~aD~aILVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVVVNK~D 416 (694)
+.+++ .++++++++|.+.. +|+. +..|..-.-.+-..+ +.| +++|+||+|
T Consensus 7 i~AL~hL~~~ilfi~D~Se~---CGys-ie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 7 ITALAHLADAILFIIDPSEQ---CGYS-IEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHGGGGT-SEEEEEE-TT-T---TSS--HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHhhcceEEEEEcCCCC---CCCC-HHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 34443 47899999999864 2332 223332222223334 455 999999998
No 498
>PRK07261 topology modulation protein; Provisional
Probab=93.25 E-value=0.076 Score=52.03 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005478 268 NLAIVGHVDSGKSTLSGRLLFL 289 (694)
Q Consensus 268 ~VaivG~vnaGKSTLi~~L~~~ 289 (694)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 499
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=0.49 Score=55.25 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=44.9
Q ss_pred CeEeeEEEEeeeeecCCCEEEEecCC--eeeEEEeeeecccccceeccCCceeEEecc
Q 005478 508 GQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQG 563 (694)
Q Consensus 508 G~V~v~GrV~sG~L~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~g 563 (694)
+.+++...|..|.|+.|..|-+.--. ...+|.||++++.+|+.|.-||-|+|.|-.
T Consensus 950 dPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 950 DPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred CCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 33435668999999999988764321 257999999999999999999999998754
No 500
>PRK14530 adenylate kinase; Provisional
Probab=93.19 E-value=0.084 Score=53.55 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005478 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (694)
Q Consensus 266 ~~~VaivG~vnaGKSTLi~~L~~~~g~ 292 (694)
..+|+|+|.+||||||+...|....+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999876654
Done!