Query 005478
Match_columns 694
No_of_seqs 356 out of 3689
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 18:22:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005478.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1985-1989//hhsearch_pdb/005478hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 1.0 1 1 617.8 47.2 424 262-691 13-439 (439)
2 3mca_A HBS1, elongation factor 1.0 1 1 605.5 33.3 418 261-690 172-592 (592)
3 3izq_1 HBS1P, elongation facto 1.0 1 1 596.9 37.6 426 263-691 164-611 (611)
4 1r5b_A Eukaryotic peptide chai 1.0 1 1 588.2 28.7 422 264-691 41-467 (467)
5 3p26_A Elongation factor 1 alp 1.0 1 1 588.1 40.3 426 263-691 30-477 (483)
6 1f60_A Elongation factor EEF1A 1.0 1 1 586.7 41.5 424 264-692 5-442 (458)
7 1jny_A EF-1-alpha, elongation 1.0 1 1 576.2 43.4 424 264-692 4-430 (435)
8 1zun_B Sulfate adenylate trans 1.0 1 1 534.4 43.3 408 264-688 22-434 (434)
9 1d2e_A Elongation factor TU (E 1.0 1 1 480.9 38.5 377 265-693 2-389 (397)
10 3avx_A Elongation factor TS, e 1.0 1 1 479.2 37.0 382 260-694 290-681 (1289)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=1.00 E-value=1 Score=617.81 Aligned_cols=424 Identities=35% Similarity=0.663 Sum_probs=401.0
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEEC
Q ss_conf 98883089999289999789999999720854211234678988650888630121023200011148178889999851
Q 005478 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 262 ~~~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~ 341 (694)
..+.+++|+++||+|+|||||+++|++..+.+..+.+.++++++...|+++|.++|.+|..++|+++|+|++.....|++
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEEC
T ss_conf 89862399999389999899999999873997667888888888750666222455433655676069439875899961
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--C
Q ss_conf 89389999399911128889862123788999973488851013453236899999999982998099998035511--3
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--Q 419 (694)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv--~ 419 (694)
.++.++|||||||++|.++|..++..+|++||||||+++.++.+|.. .+|+++|+.++..+++|++|+|+||||++ +
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 98579999899707889999854856899999998997841145677-74389999999984998489975347876622
Q ss_pred CCHHHHHHHHHHHCCCHHCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5503486888752000000466689-850999462338785357887544333468662433002699998889995102
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMP 498 (694)
Q Consensus 420 ~s~e~~~~i~~~l~~~l~~~g~~~~-~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G~~LLe~L~~l~~~~~~~~~pl~~~ 498 (694)
|++++++.+.+++..+++.+++.+. .++++|+||++|+|+.+... .++||+|++|++.|+.++++.+..+.||+|+
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~---~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~ 248 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLP 248 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCC---CCCCCCCHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 5799999999999999987423545770599964357755311233---4544672679999974789766777872899
Q ss_pred EEEEEECCCCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECC
Q ss_conf 67687308972755789961045279999990198145798654256554021258721587212442343247254318
Q 005478 499 ICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 499 I~dv~~~~~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~i~L~gi~~~~i~~G~VL~~~ 578 (694)
|+++|+. .|++ ++|+|++|+|++||+|.++|++..++|++|++++.++++|.|||+|+|+|+|++..++++|+||+++
T Consensus 249 v~~~~~~-~G~v-~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~ 326 (439)
T 3j2k_7 249 IVDKYKD-MGTV-VLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDP 326 (439)
T ss_pred EEEEECC-CCEE-EEEEEEEEEEECCCEEEECCCCCEEEEEEEEECCEECCEECCCCCCEEEEECCCHHHCCCCEEECCC
T ss_conf 9989749-9759-9999973479549999973589457889997788073773289854689923556434870873279
Q ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCEE
Q ss_conf 99741211899999991489974479731699834358899999876303666830135884237899599999918228
Q 005478 579 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 658 (694)
Q Consensus 579 ~~p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~v~l~l~~pi 658 (694)
+.+++.++.|+|++.||+++.+|..||++.+|+|+.+++|+|.+|.+++|.+|++..++.|++|+.|+.|.|++++.+|+
T Consensus 327 ~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~ 406 (439)
T 3j2k_7 327 SNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTI 406 (439)
T ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEECEEEEEEEEEEEEEECCCCHHHHCCCCCEECCCCEEEEEEEECCEE
T ss_conf 99875236999999990898767899889999800099999999998645884121125752204796799999948807
Q ss_pred EEECCCCCCCCCEEEEEECCCEEEEEEEEEECC
Q ss_conf 720255667751199973994799999986014
Q 005478 659 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 659 ~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~ 691 (694)
|+|+|.+++.||||+||++|+|+|+|+|+++++
T Consensus 407 ~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 407 CLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EEEECCCCCCCCCEEEEECCCEEEEEEEEEECC
T ss_conf 986423564578899997992599999999229
No 2
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=605.47 Aligned_cols=418 Identities=38% Similarity=0.667 Sum_probs=389.1
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEE
Q ss_conf 89888308999928999978999999972085421123467898865088863012102320001114817888999985
Q 005478 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (694)
Q Consensus 261 ~~~~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~ 340 (694)
...+.+++|+++||+|+|||||+++|++.++.+..+.+.++++.+...|+++|.++|.+|...+|+++|+|++.....|.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEE
T ss_conf 16898518999858999889999999987188546788988776765187520134442253444138816975389997
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 18938999939991112888986212378899997348885101345323689999999998299809999803551135
Q 005478 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (694)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~~ 420 (694)
+.++.++|||||||++|..+|..++..+|++|||||++.+.|+.++.. ..|+++|+.++..+++|++|+|+||||+++|
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~-~~qt~e~l~~~~~lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE-NGQTREHAYLLRALGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCS-CSSHHHHHHHHHHSSCCCEEEEEECGGGGTT
T ss_pred ECCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 199489999899828889999988865899999997887752224465-5579999999998399849999963466554
Q ss_pred CHHHHHHHHHHHCCCH-HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 5034868887520000-004666898509994623387853578875443334686624330026999988899951026
Q 005478 421 SKDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (694)
Q Consensus 421 s~e~~~~i~~~l~~~l-~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G~~LLe~L~~l~~~~~~~~~pl~~~I 499 (694)
++++++.+..++..++ +.+++....++++|+||++|.|+.+.... ..++||.|+.|+++|..+.+|.+..+.||+|+|
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~-~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v 409 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS-DLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSI 409 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC-GGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHEE
T ss_conf 3789999999999999875088866248999754557543345432-212235407899999752065555555600124
Q ss_pred EEEEECCCCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCC-EECCCCCEEEEECCCCCCCCCCCCEEECC
Q ss_conf 76873089727557899610452799999901981457986542565540-21258721587212442343247254318
Q 005478 500 CDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCS-VARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 500 ~dv~~~~~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~~~~v~-~A~aGd~V~i~L~gi~~~~i~~G~VL~~~ 578 (694)
+++|++..|++ ++|+|.+|+|++||+|.++|.+...+|++|++++.+++ +|.||++|+|.|+|++..++++|+||+++
T Consensus 410 ~~v~~~~~g~v-~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~ 488 (592)
T 3mca_A 410 DDVYRSPRSVT-VTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNY 488 (592)
T ss_dssp EEEEEETTEEE-EEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECS
T ss_pred EEEEECCCEEE-EEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCC
T ss_conf 68995598299-99999413673698899916994689999997584576340689889999725300233137885269
Q ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE-ECCE
Q ss_conf 997412118999999914899744797316998343588999998763036668301358842378995999999-1822
Q 005478 579 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVA-LQEP 657 (694)
Q Consensus 579 ~~p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~v~l~-l~~p 657 (694)
+.|+..+..|+|++.||.++.||..|+++++|+|+.+++|+| .|... .++.|++|++|+.+.|+|+ +.+|
T Consensus 489 ~~~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--------~~~~~~~l~~gd~~~v~l~fl~~p 559 (592)
T 3mca_A 489 ENPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--------NNKRSRHIASRKRALVRISFLDGL 559 (592)
T ss_dssp SSCCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEES--------SSSCCSEECSSCEEEEEEEESSSC
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEE-EEEEC--------CCCCHHCCCCCCEEEEEEEECCCC
T ss_conf 997553676999999978876677898899997673888999-99750--------544200037998799999979985
Q ss_pred EEEECCCCCCCCCEEEEEECCCEEEEEEEEEEC
Q ss_conf 872025566775119997399479999998601
Q 005478 658 VCVEEFSNCRALGRAFLRSSGRTIAVGIVTRII 690 (694)
Q Consensus 658 i~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~ 690 (694)
+|+++|.+++.+|||+||+.|+|||+|+|++++
T Consensus 560 ~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 560 FPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp EEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEEEECCCCCCCCEEEEEECCCEEEEEEEEECC
T ss_conf 798742677889769998799089999999719
No 3
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=596.86 Aligned_cols=426 Identities=33% Similarity=0.607 Sum_probs=396.4
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEECC
Q ss_conf 88830899992899997899999997208542112346789886508886301210232000111481788899998518
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.++.++|+++|++|+|||||+++|++..+.+..+.+.++++.+...|+++|.++|++|....|+.+|+|++.....+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCEEEEEEEEEEECC
T ss_conf 69951899997989988999999997539865778888776665416664210001144346550781176016999629
Q ss_pred CEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH
Q ss_conf 93899993999111288898621237889999734888510134532368999999999829980999980355113550
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~~s~ 422 (694)
++.++|||||||++|..++..++..+|++|||||++.|.++.++.. ..|+.+|+.++..++++++|+|+||+|++++++
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~-~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL-DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCT-TSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHH
T ss_conf 9259999899875107899998764480499998888853444012-167999999999759985999982566664038
Q ss_pred HHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--C----CCCCCCCCCC
Q ss_conf 348688875200000046668985099946233878535788754433346866243300269--9----9988899951
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR--P----PPREFSKPLL 496 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G~~LLe~L~~l~--~----~~~~~~~pl~ 496 (694)
.+++.+.+++..+++.+++....++++|+||++|.|+.+.......++||+|++|++.|+.+. . |.+..+.||+
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 89999999999998752025567617860032687864467432444444688579999988630665575444566525
Q ss_pred CCEEEEEECC----CCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECC--------CCCCEECCCCCEEEEECCC
Q ss_conf 0267687308----972755789961045279999990198145798654256--------5540212587215872124
Q 005478 497 MPICDVLKSQ----HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS--------QSCSVARAGDNIAVSLQGI 564 (694)
Q Consensus 497 ~~I~dv~~~~----~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~~--------~~v~~A~aGd~V~i~L~gi 564 (694)
|+|+++|+++ .|+| ++|+|.+|+|++||.|.++|++..++|++|++++ .++++|.|||+|+|+|+++
T Consensus 403 ~~V~~v~~~~~~~g~g~v-~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~ 481 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481 (611)
T ss_dssp EECCEEECCSSSCSSSSE-EEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSC
T ss_pred HHEEEEECCCCCCCCEEE-EEEEEEECEECCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEECCCCCCEEEEEEC
T ss_conf 321345414766787069-9999972466169989991699607999999756434555564236636998525775111
Q ss_pred CCCCCCCCCEEECCCC-CCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 4234324725431899-741211899999991489974479731699834358899999876303666830135884237
Q 005478 565 DVSRVMSGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLT 643 (694)
Q Consensus 565 ~~~~i~~G~VL~~~~~-p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~ 643 (694)
+..++++|+||++++. |+..+..|+|++.||.++.||..|+++++|+|+.+++|+|..|.+++|.+|++. +++|++|+
T Consensus 482 ~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~~l~ 560 (611)
T 3izq_1 482 YPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLG 560 (611)
T ss_dssp CTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSCSSS
T ss_pred CHHHCCCEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCCC-CCCCCCCC
T ss_conf 47558622883378888875212999999997898778999989999787395178666544414665442-35764347
Q ss_pred CCCEEEEEEEE---CCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEECC
Q ss_conf 89959999991---8228720255667751199973994799999986014
Q 005478 644 AKQSAIVEVAL---QEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 644 ~g~~a~v~l~l---~~pi~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~ 691 (694)
+|+.|.|+|.+ .+|+|+++|.+++.+|||+||++|+|||+|+|+++.+
T Consensus 561 ~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~~ 611 (611)
T 3izq_1 561 SKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611 (611)
T ss_dssp SCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEECC
T ss_pred CCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCEEEEEEEEEECC
T ss_conf 998799999988788836886424688887189996997799999998239
No 4
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=1.00 E-value=1 Score=588.20 Aligned_cols=422 Identities=38% Similarity=0.667 Sum_probs=392.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEECCC
Q ss_conf 88308999928999978999999972085421123467898865088863012102320001114817888999985189
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+..++|+++||+|+|||||+++|++..+.+..+.+.++++++...|+.++.++|.+|..++|+++|+|++..+.+|.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 98069999978899999999999998389875788887767875187621123330366456505933873269996299
Q ss_pred EEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CCC
Q ss_conf 389999399911128889862123788999973488851013453236899999999982998099998035511--355
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QYS 421 (694)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv--~~s 421 (694)
+.++|||||||++|.++|..++..+|++|||||++.+.++.+|.. .+|+++|+.++..+++|++|+++||||+. +|+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER-GGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST-TCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf 089999899827888999852144777999970776741245677-8768999999998499879999887528776614
Q ss_pred HHHHHHHHHHHCCCHHCC-CCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 034868887520000004-666-898509994623387853578875443334686624330026999988899951026
Q 005478 422 KDRFDSIKVQLGTFLRSC-GFK-DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~-g~~-~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G~~LLe~L~~l~~~~~~~~~pl~~~I 499 (694)
+++++.+..++..+++.. ++. ...++++|+||++|+|+.+... ...++||.|++|++.|+.+++|.+..+.||+++|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~-~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD-SSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC-TTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 899999999999999971598866772499624200244200122-3457656612699999737888678999928999
Q ss_pred EEEEECCCCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEEC-CCCCCEECCCCCEEEEECCCCCCCCCCCCEEECC
Q ss_conf 768730897275578996104527999999019814579865425-6554021258721587212442343247254318
Q 005478 500 CDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 500 ~dv~~~~~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~i~L~gi~~~~i~~G~VL~~~ 578 (694)
+++|+. .|++ ++|+|.+|+|++||+|.++|.+..++|++|+++ +.++++|.|||+|+|.|+| +..++++|+||+++
T Consensus 279 ~~~~~~-~G~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~ 355 (467)
T 1r5b_A 279 ASKYKD-LGTI-LEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTST 355 (467)
T ss_dssp CEEEES-SSEE-EEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECS
T ss_pred EEEEEC-CCEE-EEEEEEEEEEEECCEEEECCCCEEEEEEEEECCCCCEEEEECCCCEEEEEEEC-CHHHCCCEEEEECC
T ss_conf 999968-9839-99999504995198899856880689988862698371388389879999706-67668866799479
Q ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCEE
Q ss_conf 99741211899999991489974479731699834358899999876303666830135884237899599999918228
Q 005478 579 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 658 (694)
Q Consensus 579 ~~p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~v~l~l~~pi 658 (694)
+.++..+..|+|++.||+++.||..||++.+|+|+.+++|++..|.+.+|. +++..+++|++|++|+.+.|+|+|.+|+
T Consensus 356 ~~~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~ 434 (467)
T 1r5b_A 356 KNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPV 434 (467)
T ss_dssp SSCCCEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEEEEEEECC-CCCCCCCCCCCCCCCCEEEEEEEECCEE
T ss_conf 998865549999999908997557898899999677899999998898527-7650246754048998899999979679
Q ss_pred EEECCCCCCCCCEEEEEECCCEEEEEEEEEECC
Q ss_conf 720255667751199973994799999986014
Q 005478 659 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 659 ~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~ 691 (694)
|+++|.++|.||||+||+.|+|+|+|+|+++++
T Consensus 435 ~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 435 CMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp ECCCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred EEEECCCCCCCCCEEEEECCEEEEEEEEEEECC
T ss_conf 998767577774189998993799999999449
No 5
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=1.00 E-value=1 Score=588.05 Aligned_cols=426 Identities=33% Similarity=0.609 Sum_probs=395.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEECC
Q ss_conf 88830899992899997899999997208542112346789886508886301210232000111481788899998518
Q 005478 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (694)
Q Consensus 263 ~~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~~ 342 (694)
.+..++|+++|++|+|||||+++|++..+.+..+.+.++++++...|+++|.++|.+|....|+++|+|++.....|++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHCCCCEEEEEEEEECC
T ss_conf 79953999997899999999999998659966889999888887607774002333246656763586357536998239
Q ss_pred CEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH
Q ss_conf 93899993999111288898621237889999734888510134532368999999999829980999980355113550
Q 005478 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (694)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~~s~ 422 (694)
++.++|||||||++|..++..++..+|++|||||++.+.++.++.. ..|+.+|+.++..++++++|+|+||||++++++
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~-~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL-DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCC-CHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf 9359999899818889999975623899999997887853344211-066899999999749983899997767664248
Q ss_pred HHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC----CC--CCCCCCCCCC
Q ss_conf 34868887520000004666898509994623387853578875443334686624330026----99--9988899951
Q 005478 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL----RP--PPREFSKPLL 496 (694)
Q Consensus 423 e~~~~i~~~l~~~l~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G~~LLe~L~~l----~~--~~~~~~~pl~ 496 (694)
.+++++.+++..+++.+++....++++|+||++|+|+.+.......++||+|++|++.|+.+ +. |.+..+.||+
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 99999999999999983998566419997600587763467543434445789889999998865355465656788549
Q ss_pred CCEEEEEECC----CCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECC--------CCCCEECCCCCEEEEECCC
Q ss_conf 0267687308----972755789961045279999990198145798654256--------5540212587215872124
Q 005478 497 MPICDVLKSQ----HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS--------QSCSVARAGDNIAVSLQGI 564 (694)
Q Consensus 497 ~~I~dv~~~~----~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~~--------~~v~~A~aGd~V~i~L~gi 564 (694)
|+|+++|++. .|+| ++|+|++|+|++||+|.++|++..++|++|++++ .++++|.|||+|+|.|+++
T Consensus 269 ~~v~~v~~~~~~~g~g~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~ 347 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 347 (483)
T ss_dssp EEEEEEEC---CCSCCEE-EEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESC
T ss_pred EEEEEEECCCCCCCCCEE-EEEEEECCEECCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEECCCCEEEEEEEEC
T ss_conf 999999715876788069-9999944538269999990799769999999857645556664015977999899999744
Q ss_pred CCCCCCCCCEEECCCC-CCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 4234324725431899-741211899999991489974479731699834358899999876303666830135884237
Q 005478 565 DVSRVMSGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLT 643 (694)
Q Consensus 565 ~~~~i~~G~VL~~~~~-p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~ 643 (694)
+..++++|+||++++. |+..+..|+|++.||+++.||..|+++++|+|+.+++|+|.+|.+++|.+|++. +++|++|+
T Consensus 348 ~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~~l~ 426 (483)
T 3p26_A 348 YPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLG 426 (483)
T ss_dssp CGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCSCBC
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCCC-CCCCCCCC
T ss_conf 63467852899868988975503899999997898777899889999586499999999888973887651-46764748
Q ss_pred CCCEEEEEEEE---CCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEECC
Q ss_conf 89959999991---8228720255667751199973994799999986014
Q 005478 644 AKQSAIVEVAL---QEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 691 (694)
Q Consensus 644 ~g~~a~v~l~l---~~pi~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~ 691 (694)
+|+.|.|+|++ .+|+|+++|.+++.+|||+||++|+|||+|+|+.+.+
T Consensus 427 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 427 SKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp SSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCEEEEEEEEEECC
T ss_conf 999899999988778727997612486678789995998899999988102
No 6
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=1.00 E-value=1 Score=586.70 Aligned_cols=424 Identities=37% Similarity=0.670 Sum_probs=396.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEECCC
Q ss_conf 88308999928999978999999972085421123467898865088863012102320001114817888999985189
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
+..++|+++||+|+|||||+++|++..+.++.+.+.++++++.+.|+++|.++|.+|...+|+++|+|++..+..|++.+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 86349999918999989999999987489576887776666775177621002231366568865958888899996389
Q ss_pred EEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH
Q ss_conf 38999939991112888986212378899997348885101345323689999999998299809999803551135503
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (694)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~~s~e 423 (694)
+.++|||||||++|..++..++..+|++|||||++++.++.+|.. ..|+++|+.++..+++|++|+|+||||+++|+++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~-~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK-DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT-TSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHH
T ss_conf 469999899817888999831300788999996786755544576-4308999999998499859999976666667899
Q ss_pred HHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC------------CCCHHHHHHCCCCCCCCC
Q ss_conf 48688875200000046668985099946233878535788754433346------------866243300269999888
Q 005478 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK------------GPCLLDAIDSLRPPPREF 491 (694)
Q Consensus 424 ~~~~i~~~l~~~l~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~------------G~~LLe~L~~l~~~~~~~ 491 (694)
+++.+.+++..+++.+++....++++|+||++|+|+.+... .++||+ |..|+++|+.+++|.+..
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~---~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~ 240 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT---NAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 240 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS---SCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC---CCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999719875575189833546757534444---675100234223456554678998750447886667
Q ss_pred CCCCCCCEEEEEECC-CCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCCEECCCCCEEEEECCCCCCCCC
Q ss_conf 999510267687308-9727557899610452799999901981457986542565540212587215872124423432
Q 005478 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (694)
Q Consensus 492 ~~pl~~~I~dv~~~~-~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~i~L~gi~~~~i~ 570 (694)
+.|++|+|+++|+++ .|+| ++|+|++|.|++||+|.++|.+..++|++|++++.++++|.|||+|+|.|+|++..+++
T Consensus 241 ~~p~r~~i~~v~~~~g~G~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~ 319 (458)
T 1f60_A 241 DKPLRLPLQDVYKIGGIGTV-PVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIR 319 (458)
T ss_dssp TSCCEEEEEEEEEETTTEEE-EEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSC
T ss_pred CCCCEEEEEEEEEECCCCEE-EEEEEECCEECCCCEEEECCCCCEEEEEEEEECCEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 89838899999973998389-99999587380799999877996279969888991888986998899997577530268
Q ss_pred CCCEEECCCC-CCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 4725431899-741211899999991489974479731699834358899999876303666830135884237899599
Q 005478 571 SGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (694)
Q Consensus 571 ~G~VL~~~~~-p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~ 649 (694)
+|+||+.++. |+..+..|+|++.||+++.||..||++++|+|+.+++|+|..|.+++|.++++..+++|++|++|+.+.
T Consensus 320 rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~ 399 (458)
T 1f60_A 320 RGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAAL 399 (458)
T ss_dssp TTCEEEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEE
T ss_pred CEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 65599668989874606999999996798777899789999666368899999876752765442456764137998899
Q ss_pred EEEEECCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEECCC
Q ss_conf 9999182287202556677511999739947999999860146
Q 005478 650 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIED 692 (694)
Q Consensus 650 v~l~l~~pi~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~~ 692 (694)
|+|+|.+|+|+++|.+++.||||+||+.|+|||+|+|+++.+.
T Consensus 400 v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 400 VKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp EEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEEECCEEEEECCCCCCCCCCEEEEECCEEEEEEEEEEECCC
T ss_conf 9999797289842766777775899989967999999864465
No 7
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=1.00 E-value=1 Score=576.24 Aligned_cols=424 Identities=39% Similarity=0.702 Sum_probs=397.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEECCC
Q ss_conf 88308999928999978999999972085421123467898865088863012102320001114817888999985189
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (694)
Q Consensus 264 ~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~~~ 343 (694)
++.++|+++||+|+|||||+++|++..+.+..+.+.++++++.+.|++++.|+|.+|..++|+++|+|++.....+++.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 87789999919999989999999987499387897666555665187620113332167678865961673378995298
Q ss_pred EEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CC
Q ss_conf 3899993999111288898621237889999734888510134532368999999999829980999980355113--55
Q 005478 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (694)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~--~s 421 (694)
+.++|||||||++|..++..++..+|++|||+|++++.|+..+. +..|+++|+.++..++++++|+++||||+.+ |+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf 48999989971777999996453258899999778784123466-66679999999998499859999776557774203
Q ss_pred HHHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 03486888752000000466689850999462338785357887544333468662433002699998889995102676
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G~~LLe~L~~l~~~~~~~~~pl~~~I~d 501 (694)
+++++.+.+++..+++..++....++++|+||++|+|+.+.... ++||.|..|+++|+.+++|.+..++||+++|++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~---~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC---CCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEE
T ss_conf 89999999999999997199867714999021147655236533---444661559999854699987778983999999
Q ss_pred EEECC-CCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCCC
Q ss_conf 87308-97275578996104527999999019814579865425655402125872158721244234324725431899
Q 005478 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (694)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~i~L~gi~~~~i~~G~VL~~~~~ 580 (694)
+|+++ .|++ ++|+|.+|+|++||.|.++|.+...+|++|++++.++++|.|||+|++.|+|++..++++|++|++++.
T Consensus 240 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~ 318 (435)
T 1jny_A 240 VYSISGVGTV-PVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 318 (435)
T ss_dssp EEEETTTEEE-EEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTS
T ss_pred EEEECCCCEE-EEEEEECCEEECCCEEEECCCEEEEEEEEEEECCCEEEEECCCCEEEEEEECCCHHHCCCCCEECCCCC
T ss_conf 9982998499-999994376976999997776047899799987817769769987999983488898687257047999
Q ss_pred CCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEE
Q ss_conf 74121189999999148997447973169983435889999987630366683013588423789959999991822872
Q 005478 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 660 (694)
Q Consensus 581 p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~v~l~l~~pi~v 660 (694)
++..+..|.|++.|++++.||..||++++|+|+.+++|+|..|.+.+|.+|++..+++|++|++|+.+.|+|++.+|+|+
T Consensus 319 ~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~ 398 (435)
T 1jny_A 319 PPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCV 398 (435)
T ss_dssp CCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEEC
T ss_pred CCEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEE
T ss_conf 84475799999999789976779988999957738999999986663367543235675260799989999997962898
Q ss_pred ECCCCCCCCCEEEEEECCCEEEEEEEEEECCC
Q ss_conf 02556677511999739947999999860146
Q 005478 661 EEFSNCRALGRAFLRSSGRTIAVGIVTRIIED 692 (694)
Q Consensus 661 e~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~~ 692 (694)
++|.++|.||||+||+.|+|||+|+|+++.+.
T Consensus 399 ~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 399 EKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp CCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred ECCCCCCCCCCEEEEECCEEEEEEEEEEECCC
T ss_conf 51776776750999989957999999565376
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=1.00 E-value=1 Score=534.39 Aligned_cols=408 Identities=27% Similarity=0.468 Sum_probs=370.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHCCCCCHHHHCCCEEEEEEEEEEEC
Q ss_conf 88308999928999978999999972085421123467898865088--8630121023200011148178889999851
Q 005478 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (694)
Q Consensus 264 ~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~ 341 (694)
+..++|+++||+|+|||||+++|++..+.+..+.+.++.+.+...+. ..+.+++.+|...+|+++|+|++..+.++.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEEC
T ss_conf 88139999979999999999899866499763355666555431485554102344442676688779278953557504
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 89389999399911128889862123788999973488851013453236899999999982998099998035511355
Q 005478 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (694)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~~s 421 (694)
.+..++|||||||++|..++..++..+|++|||+|++++. ..|+.+|+.++..++++++|+|+||+|+++++
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~--------~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--------QTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 8966999989986999999998785599999999799998--------58999999999981998699999757677636
Q ss_pred HHHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 03486888752000000466689850999462338785357887544333468662433002699998889995102676
Q 005478 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (694)
Q Consensus 422 ~e~~~~i~~~l~~~l~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G~~LLe~L~~l~~~~~~~~~pl~~~I~d 501 (694)
+++++.+.+++..+++.+++....++++++||++|+|+.+... .++||.|++|++.|+.++++.+..+.||+++|++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~---~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~ 250 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE---RSPWYAGQSLMEILETVEIASDRNYTDLRFPVQY 250 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT---TCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC---CCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
T ss_conf 8999999999999999839875674299986667877533444---5865567318999735787666778882889999
Q ss_pred EEECC-CCEEEEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCCC
Q ss_conf 87308-97275578996104527999999019814579865425655402125872158721244234324725431899
Q 005478 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (694)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~i~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~i~L~gi~~~~i~~G~VL~~~~~ 580 (694)
+++.. .|+. +.|+|.+|+|++||+|.++|++...+|++|++++.++++|.||++|++.+++ ..++++|++|+.++.
T Consensus 251 v~~~~~~~~g-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 251 VNRPNLNFRG-FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHADN 327 (434)
T ss_dssp EECSSSSCCE-EEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETTS
T ss_pred EECCCCCCEE-EEEEEECCEEECCCEEEEECCCEEEEEEEEEECCCCEEEECCCCEEEEEECC--CCCCCCCCEEECCCC
T ss_conf 9604888469-9999954669679999990698079988999817534584489879999588--445687239977999
Q ss_pred CCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEE
Q ss_conf 74121189999999148997447973169983435889999987630366683013588423789959999991822872
Q 005478 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 660 (694)
Q Consensus 581 p~~~~~~f~a~i~vl~~~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~v~l~l~~pi~v 660 (694)
++..++.|+|++.|+. +.||..|+++++|+|+.+++|+|..|.+.+|.++++ ++++++|++|+.+.|+|+|.+|+|+
T Consensus 328 ~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~p~~~ 404 (434)
T 1zun_B 328 VPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAPIAL 404 (434)
T ss_dssp CCCEEEEEEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEEEEEC
T ss_pred CCCCCCEEEEEEEEEC-CCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCCC--CCCCCEECCCCEEEEEEEECCEEEE
T ss_conf 8881538999999915-202799988999976889999999986540366555--3686375799989999998972898
Q ss_pred ECCCCCCCCCEEEEEEC--CCEEEEEEEEE
Q ss_conf 02556677511999739--94799999986
Q 005478 661 EEFSNCRALGRAFLRSS--GRTIAVGIVTR 688 (694)
Q Consensus 661 e~~~~~~~lgRfiLr~~--g~Tig~G~V~~ 688 (694)
++|.++|.||||+||+. |+|||+|+|+.
T Consensus 405 ~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 405 DGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp CCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 035667766509999889992899999969
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=1.00 E-value=1 Score=480.90 Aligned_cols=377 Identities=30% Similarity=0.430 Sum_probs=331.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEEECCCE
Q ss_conf 83089999289999789999999720854211234678988650888630121023200011148178889999851893
Q 005478 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (694)
Q Consensus 265 ~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~~~~~~ 344 (694)
+.++|+++||+|+|||||+++|++.. ...|+..|...+.+|...+|+++|+|++.....+...++
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 66 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKIL---------------AEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH---------------HHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSC
T ss_pred CEEEEEEEECCCCCHHHHHHHHHCHH---------------HHCCCCCCCHHHHHHCCHHHHHCCCEEEEEEEEECCCCE
T ss_conf 84899999488999899999995703---------------225865431034442587788659689845678626973
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 89999399911128889862123788999973488851013453236899999999982998099998035511355034
Q 005478 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (694)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~~s~e~ 424 (694)
.++|||||||++|..++..++..+|++|||||++++. ..|+++|+.++..+++|++|+++||+|+.+ +++.
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~--------~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP--------MPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEM 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCCEEEEEEECCCCCC-CHHH
T ss_conf 7999989986999999996573599999999899998--------878999999999849981899997865688-7889
Q ss_pred HHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHC-CCCCCCCCCCCCCCCEEE
Q ss_conf 86888752000000466689850999462338785357887544333468--662433002-699998889995102676
Q 005478 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG--PCLLDAIDS-LRPPPREFSKPLLMPICD 501 (694)
Q Consensus 425 ~~~i~~~l~~~l~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G--~~LLe~L~~-l~~~~~~~~~pl~~~I~d 501 (694)
++.+.+++..+++..++....++++++||++|.|... ++||.| ..|+++|.. ++.|.+..++||+++|++
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~-------~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~ 210 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRD-------PELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVES 210 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCC-------TTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
T ss_conf 9999999999998769982467199946354004568-------876678699999998874789987887857999999
Q ss_pred EEECC-CCEEEEEEEEEEEEECCCCEEEEECCC--EEEEEEEEEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECC
Q ss_conf 87308-972755789961045279999990198--145798654256554021258721587212442343247254318
Q 005478 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (694)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~i~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~i~L~gi~~~~i~~G~VL~~~ 578 (694)
+|.++ .|+| ++|+|.+|+|++||+|.++|.+ ...+|++|++++.++++|.|||+|++.|+|++..++++|++|+++
T Consensus 211 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~ 289 (397)
T 1d2e_A 211 VYSIPGRGTV-VTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 289 (397)
T ss_dssp EEEETTTEEE-EEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEEST
T ss_pred EEEECCCEEE-EEEEEEECEEECCCEEEEECCCCCEEEEEEEEEECCCCCCEECCCCCEEEEECCCCHHCCCCEEEEECC
T ss_conf 9995993689-999996046827999999179997279998987778324886488731789525405205744699679
Q ss_pred CCCCCEEEEEEEEEEEECCC-----CCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 99741211899999991489-----9744797316998343588999998763036668301358842378995999999
Q 005478 579 DFPVAIATHLELKVLVLDFA-----PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVA 653 (694)
Q Consensus 579 ~~p~~~~~~f~a~i~vl~~~-----~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~v~l~ 653 (694)
+. +.....|+|++.||++. .||..||++++|+++.+++|+|. +. ..+++|++|+.+.|+|+
T Consensus 290 ~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------------~~~~~l~~~~~~~v~~~ 355 (397)
T 1d2e_A 290 GS-IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------------PGKELAMPGEDLKLTLI 355 (397)
T ss_dssp TS-CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------SSCCCBCTTCEEEEEEE
T ss_pred CC-CCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEE-EC------------CCCCCCCCCCEEEEEEE
T ss_conf 98-776668999999964655567666679988899991278989999-86------------88414258998999999
Q ss_pred ECCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEECCCC
Q ss_conf 1822872025566775119997399479999998601468
Q 005478 654 LQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQ 693 (694)
Q Consensus 654 l~~pi~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~~~ 693 (694)
|.+|+|++++. ||+||+.|+|+|+|+|+++.+..
T Consensus 356 ~~~p~~~~~~~------r~~lr~~~~ti~~G~i~~~~~~~ 389 (397)
T 1d2e_A 356 LRQPMILEKGQ------RFTLRDGNRTIGTGLVTDTPAMT 389 (397)
T ss_dssp EEEEECCCTTC------EEEEEETTEEEEEEEEEECCCCC
T ss_pred ECCEEEECCCC------EEEEEECCEEEEEEEEEECCCCC
T ss_conf 89818973198------39998299689999991316676
No 10
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=1.00 E-value=1 Score=479.17 Aligned_cols=382 Identities=29% Similarity=0.446 Sum_probs=331.9
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCEEEEEEEEEE
Q ss_conf 68988830899992899997899999997208542112346789886508886301210232000111481788899998
Q 005478 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (694)
Q Consensus 260 ~~~~~~~~~I~IvG~~dsGKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~g~~~~a~~~D~~~~Er~~GiTi~~~~~~~ 339 (694)
....+..++|+++||+|+|||||+++|++.. ...|++.+...+.+|...+|+++|+|++.....+
T Consensus 290 ~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~---------------~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f 354 (1289)
T 3avx_A 290 FERTKPHVNVGTIGHVDHGKTTLTAAITTVL---------------AKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354 (1289)
T ss_dssp CCCCCCEEEEEEEESTTSSHHHHHHHHHHHH---------------HHHSCC---------------------CCSCEEE
T ss_pred HHCCCCEEEEEEECCCCCCHHHHHHHHHHHH---------------CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 4225770489998289988999999998640---------------2356432333223566421323753688889997
Q ss_pred ECCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 51893899993999111288898621237889999734888510134532368999999999829980999980355113
Q 005478 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (694)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNKiDlv~ 419 (694)
++.++.++|||||||++|..++..++..+|++|||||++++. ..|+++|+.++..+++|++|+++||||+++
T Consensus 355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv--------~~QTrEhL~ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP--------MPQTREHILLGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS--------CTTHHHHHHHHHHHTCSCEEEEEECCTTCC
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCC--------CHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 479879999989883999999999884399999998187667--------588999999998759986999985145421
Q ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf 5503486888752000000466689850999462338785357887544333468-662433002-69999888999510
Q 005478 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLM 497 (694)
Q Consensus 420 ~s~e~~~~i~~~l~~~l~~~g~~~~~v~iIpvSA~tG~gI~e~~~~~~~~~Wy~G-~~LLe~L~~-l~~~~~~~~~pl~~ 497 (694)
++++++.+.+++..+++..++....++++++||++|.+- ..+||.| ..|+++|.. ++.|.+..+.||++
T Consensus 427 -d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng--------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~ 497 (1289)
T 3avx_A 427 -DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG--------DAEWEAKILELAGFLDSYIPEPERAIDKPFLL 497 (1289)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC--------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEE
T ss_pred -CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC--------CCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf -034689999999999985134666315999872247777--------86300363466767765368875442121033
Q ss_pred CEEEEEECC-CCEEEEEEEEEEEEECCCCEEEEECCC--EEEEEEEEEECCCCCCEECCCCCEEEEECCCCCCCCCCCCE
Q ss_conf 267687308-972755789961045279999990198--14579865425655402125872158721244234324725
Q 005478 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (694)
Q Consensus 498 ~I~dv~~~~-~G~v~v~G~V~sG~Lk~Gd~i~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~i~L~gi~~~~i~~G~V 574 (694)
+|+++|+++ .|+| ++|+|.+|+|++||+|.++|.+ ..++|++|++++.++++|.|||+|++.|+|++..++++|++
T Consensus 498 pId~Vf~i~G~GtV-vtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdV 576 (1289)
T 3avx_A 498 PIEDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQV 576 (1289)
T ss_dssp ECCEEEEETTTEEE-EEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred ECCCCCCCCCCCEE-EEEEEECCEEECCCEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCEEEEEECCHHCCCCCCE
T ss_conf 00000012588679-99999663896198899936899636999788636924538726874236764010511886258
Q ss_pred EECCCCCCCEEEEEEEEEEEECC-----CCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 43189974121189999999148-----9974479731699834358899999876303666830135884237899599
Q 005478 575 LCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (694)
Q Consensus 575 L~~~~~p~~~~~~f~a~i~vl~~-----~~pi~~G~~~~i~i~~~~~~a~i~~I~~~ld~~tg~~~k~~p~~l~~g~~a~ 649 (694)
|+.++. +.....|+|++.|+.+ +.|+..|+++++|+++..++|+|. +. ..+++|++|+.+.
T Consensus 577 L~~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L~~Gd~a~ 642 (1289)
T 3avx_A 577 LAKPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMVMPGDNIK 642 (1289)
T ss_dssp EESTTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCBCTTCCCE
T ss_pred EECCCC-CCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEE-EC------------CCCCCCCCCCEEE
T ss_conf 965998-764216889999971456665543458970499996115899999-87------------7851326898899
Q ss_pred EEEEECCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEECCCCC
Q ss_conf 999918228720255667751199973994799999986014689
Q 005478 650 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQQ 694 (694)
Q Consensus 650 v~l~l~~pi~ve~~~~~~~lgRfiLr~~g~Tig~G~V~~v~~~~~ 694 (694)
|+|+|.+|+|++++. ||+||+.|+|||+|+|+++.+..|
T Consensus 643 V~L~l~~Pi~ve~g~------RFiLRd~grTIG~G~V~~v~~~~~ 681 (1289)
T 3avx_A 643 MVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKVLSGAS 681 (1289)
T ss_dssp EEEEEEEEEECCTTC------EEEEEETTEEEEEEEEEEECCCCC
T ss_pred EEEEECCEEEECCCC------EEEEEECCEEEEEEEEEEECHHHH
T ss_conf 999989658874498------899971995899999922164332
Done!