Query 005480
Match_columns 694
No_of_seqs 686 out of 3876
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 00:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 2E-112 5E-117 952.5 53.4 587 66-674 2-592 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 2E-108 4E-113 883.7 40.2 442 220-674 293-736 (752)
3 CHL00176 ftsH cell division pr 100.0 4E-102 9E-107 892.1 61.1 584 91-678 47-631 (638)
4 KOG0731 AAA+-type ATPase conta 100.0 4E-101 9E-106 873.6 51.3 576 93-678 163-754 (774)
5 PRK10733 hflB ATP-dependent me 100.0 1.1E-93 2.3E-98 829.7 64.0 595 62-677 3-600 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 7.8E-84 1.7E-88 729.7 50.6 490 173-671 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 5.1E-63 1.1E-67 515.9 17.1 260 218-477 138-398 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.8E-56 1.9E-60 530.6 29.7 307 256-589 1622-1983(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.5E-50 3.2E-55 448.6 24.5 249 223-474 426-677 (693)
10 KOG0727 26S proteasome regulat 100.0 2.8E-50 6E-55 401.8 23.0 323 143-474 76-399 (408)
11 KOG0726 26S proteasome regulat 100.0 1.2E-49 2.5E-54 404.0 13.8 320 147-475 110-430 (440)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 7.1E-48 1.5E-52 421.3 24.3 247 225-474 505-772 (802)
13 KOG0729 26S proteasome regulat 100.0 1.2E-47 2.6E-52 385.3 19.8 268 211-478 157-425 (435)
14 KOG0652 26S proteasome regulat 100.0 5.8E-47 1.3E-51 379.4 19.7 256 219-474 159-415 (424)
15 KOG0728 26S proteasome regulat 100.0 1.5E-46 3.2E-51 374.7 21.6 257 222-478 138-395 (404)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-45 3E-50 403.3 20.6 228 224-454 183-414 (802)
17 PTZ00454 26S protease regulato 100.0 1.2E-42 2.7E-47 381.6 28.1 254 222-475 136-390 (398)
18 COG1223 Predicted ATPase (AAA+ 100.0 4.5E-43 9.8E-48 351.7 20.1 241 223-470 113-354 (368)
19 PF01434 Peptidase_M41: Peptid 100.0 2E-43 4.3E-48 358.2 17.9 210 460-669 1-213 (213)
20 KOG0736 Peroxisome assembly fa 100.0 2.5E-42 5.4E-47 385.8 23.4 251 222-474 663-935 (953)
21 KOG0738 AAA+-type ATPase [Post 100.0 2.3E-42 5.1E-47 362.7 21.4 247 223-474 204-472 (491)
22 PRK03992 proteasome-activating 100.0 3.1E-41 6.6E-46 371.1 28.0 258 221-478 121-379 (389)
23 PTZ00361 26 proteosome regulat 100.0 4.9E-41 1.1E-45 371.5 25.0 254 221-474 173-427 (438)
24 KOG0651 26S proteasome regulat 100.0 1.9E-40 4.1E-45 340.2 13.3 251 222-472 123-374 (388)
25 KOG0735 AAA+-type ATPase [Post 100.0 3.1E-39 6.7E-44 358.1 22.5 228 224-454 660-888 (952)
26 COG0464 SpoVK ATPases of the A 100.0 5.5E-39 1.2E-43 364.0 24.2 245 224-471 235-483 (494)
27 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-38 3.8E-43 346.8 27.2 252 220-471 111-363 (364)
28 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-38 3.1E-43 375.9 26.0 248 225-474 447-713 (733)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 8.9E-38 1.9E-42 350.2 25.0 243 225-474 222-466 (489)
30 KOG0739 AAA+-type ATPase [Post 100.0 1.4E-38 3.1E-43 324.2 13.9 227 222-454 124-353 (439)
31 KOG0737 AAA+-type ATPase [Post 100.0 2.3E-37 4.9E-42 325.5 20.3 226 224-454 85-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 4.1E-35 8.8E-40 328.6 24.9 255 220-476 171-483 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 9.3E-34 2E-38 315.1 18.7 244 226-480 180-425 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 2E-33 4.3E-38 303.8 16.8 281 222-503 210-531 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 8.7E-32 1.9E-36 318.3 29.3 249 225-476 172-440 (733)
36 PLN00020 ribulose bisphosphate 100.0 6.3E-32 1.4E-36 287.2 24.6 262 226-500 110-393 (413)
37 KOG0732 AAA+-type ATPase conta 100.0 8.1E-32 1.8E-36 314.5 19.1 252 224-478 258-532 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 2.1E-30 4.6E-35 281.6 16.4 244 224-473 146-406 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 5.3E-21 1.2E-25 202.5 20.9 213 230-454 22-257 (287)
40 KOG0743 AAA+-type ATPase [Post 99.9 1.8E-21 3.9E-26 210.7 17.1 207 228-443 198-412 (457)
41 PF00004 AAA: ATPase family as 99.9 2.7E-21 5.8E-26 178.9 14.2 130 267-400 1-132 (132)
42 TIGR02881 spore_V_K stage V sp 99.9 2.3E-20 5E-25 195.1 21.0 212 229-454 4-241 (261)
43 TIGR02880 cbbX_cfxQ probable R 99.9 1.9E-20 4E-25 198.3 20.1 211 231-454 22-256 (284)
44 KOG0742 AAA+-type ATPase [Post 99.8 2.6E-20 5.6E-25 197.5 18.8 233 226-469 350-610 (630)
45 KOG0736 Peroxisome assembly fa 99.8 8.1E-19 1.8E-23 198.1 19.5 208 262-475 429-657 (953)
46 KOG0735 AAA+-type ATPase [Post 99.8 3E-18 6.5E-23 191.9 22.9 262 231-503 408-684 (952)
47 COG0464 SpoVK ATPases of the A 99.8 1.2E-17 2.6E-22 189.9 25.0 220 250-474 4-229 (494)
48 PRK00080 ruvB Holliday junctio 99.8 4.2E-18 9.1E-23 183.8 19.9 220 223-471 17-250 (328)
49 TIGR00635 ruvB Holliday juncti 99.8 4E-18 8.6E-23 181.6 19.1 210 229-470 2-228 (305)
50 KOG0744 AAA+-type ATPase [Post 99.8 1.2E-18 2.6E-23 180.8 13.9 237 230-470 141-413 (423)
51 PF05496 RuvB_N: Holliday junc 99.8 8.6E-18 1.9E-22 169.4 17.7 193 224-448 17-226 (233)
52 TIGR02902 spore_lonB ATP-depen 99.8 1E-17 2.3E-22 191.4 17.8 259 181-470 8-331 (531)
53 TIGR02639 ClpA ATP-dependent C 99.8 9.7E-18 2.1E-22 198.7 17.6 225 226-474 177-432 (731)
54 PRK11034 clpA ATP-dependent Cl 99.7 3.9E-17 8.5E-22 192.3 17.8 226 226-475 181-437 (758)
55 COG2256 MGS1 ATPase related to 99.7 8.8E-17 1.9E-21 172.0 18.2 205 225-472 18-239 (436)
56 COG2255 RuvB Holliday junction 99.7 8E-17 1.7E-21 165.4 17.1 217 225-473 20-253 (332)
57 TIGR00763 lon ATP-dependent pr 99.7 4.2E-17 9.1E-22 194.4 17.3 164 231-414 320-505 (775)
58 TIGR00362 DnaA chromosomal rep 99.7 1.4E-16 3E-21 176.9 18.8 242 225-502 104-358 (405)
59 PRK00149 dnaA chromosomal repl 99.7 1.2E-16 2.7E-21 179.6 17.1 295 225-562 116-426 (450)
60 PRK14956 DNA polymerase III su 99.7 1.2E-15 2.7E-20 169.9 19.1 213 221-468 8-243 (484)
61 TIGR02928 orc1/cdc6 family rep 99.7 3.3E-15 7.1E-20 163.0 22.0 223 227-471 11-274 (365)
62 PRK04195 replication factor C 99.7 1.3E-15 2.9E-20 172.6 19.3 212 220-468 3-222 (482)
63 PRK13342 recombination factor 99.7 2.2E-15 4.8E-20 167.7 20.5 203 223-472 4-220 (413)
64 PRK14962 DNA polymerase III su 99.7 1.8E-15 3.8E-20 170.4 19.0 206 223-469 6-240 (472)
65 PRK12323 DNA polymerase III su 99.7 1.1E-15 2.3E-20 174.3 16.4 211 222-467 7-245 (700)
66 PRK14088 dnaA chromosomal repl 99.7 3.2E-15 6.9E-20 167.5 19.7 245 224-502 98-355 (440)
67 PRK14961 DNA polymerase III su 99.6 4.5E-15 9.7E-20 162.6 19.5 213 222-469 7-242 (363)
68 PRK12402 replication factor C 99.6 7.7E-15 1.7E-19 158.0 20.9 214 219-469 3-247 (337)
69 PRK07003 DNA polymerase III su 99.6 3E-15 6.5E-20 172.5 18.4 211 221-466 6-239 (830)
70 PRK14960 DNA polymerase III su 99.6 3.9E-15 8.5E-20 170.1 18.6 206 222-468 6-240 (702)
71 PRK00411 cdc6 cell division co 99.6 1.2E-14 2.6E-19 160.3 21.5 223 227-471 26-282 (394)
72 PRK06645 DNA polymerase III su 99.6 6.3E-15 1.4E-19 166.7 19.5 216 221-468 11-253 (507)
73 PRK14958 DNA polymerase III su 99.6 3.7E-15 8E-20 169.3 17.6 207 221-468 6-241 (509)
74 TIGR03345 VI_ClpV1 type VI sec 99.6 5.9E-15 1.3E-19 176.8 20.1 218 225-467 181-427 (852)
75 PRK14086 dnaA chromosomal repl 99.6 1.4E-14 3.1E-19 165.4 21.6 244 225-501 282-536 (617)
76 PRK06893 DNA replication initi 99.6 2.2E-14 4.7E-19 147.4 20.5 211 224-468 9-227 (229)
77 PHA02544 44 clamp loader, smal 99.6 8.9E-15 1.9E-19 156.7 17.7 208 219-466 9-226 (316)
78 PRK14949 DNA polymerase III su 99.6 1.4E-14 3E-19 169.9 19.9 209 222-465 7-238 (944)
79 PRK08691 DNA polymerase III su 99.6 1E-14 2.2E-19 168.0 18.4 213 222-469 7-242 (709)
80 PRK07994 DNA polymerase III su 99.6 1.3E-14 2.7E-19 167.7 18.6 211 223-468 8-241 (647)
81 KOG2028 ATPase related to the 99.6 1.1E-14 2.4E-19 153.3 15.5 206 224-470 131-367 (554)
82 PLN03025 replication factor C 99.6 2.3E-14 4.9E-19 154.3 18.6 204 221-467 3-219 (319)
83 PRK14964 DNA polymerase III su 99.6 2.1E-14 4.6E-19 161.5 18.9 205 223-468 5-238 (491)
84 TIGR03420 DnaA_homol_Hda DnaA 99.6 3.9E-14 8.5E-19 144.0 19.2 204 226-468 10-225 (226)
85 CHL00095 clpC Clp protease ATP 99.6 6.8E-14 1.5E-18 168.0 24.1 163 226-413 174-353 (821)
86 PRK10865 protein disaggregatio 99.6 8.4E-15 1.8E-19 175.9 16.3 167 225-416 172-356 (857)
87 KOG2004 Mitochondrial ATP-depe 99.6 2.9E-15 6.3E-20 168.6 11.1 174 220-415 400-597 (906)
88 PRK14963 DNA polymerase III su 99.6 3.5E-14 7.5E-19 161.2 19.5 204 223-468 6-237 (504)
89 PRK14951 DNA polymerase III su 99.6 2.8E-14 6.1E-19 164.4 18.7 213 221-468 6-246 (618)
90 TIGR02397 dnaX_nterm DNA polym 99.6 4.1E-14 8.9E-19 153.7 18.9 208 221-469 4-240 (355)
91 PRK12422 chromosomal replicati 99.6 8.1E-14 1.7E-18 156.1 21.6 229 225-473 105-345 (445)
92 PRK05563 DNA polymerase III su 99.6 4.1E-14 8.9E-19 162.7 19.5 211 223-468 8-241 (559)
93 PRK07940 DNA polymerase III su 99.6 3.8E-14 8.2E-19 156.3 18.3 191 229-444 3-215 (394)
94 PRK14087 dnaA chromosomal repl 99.6 2.5E-14 5.5E-19 160.6 16.8 297 227-565 111-428 (450)
95 PRK13341 recombination factor 99.6 7.2E-14 1.6E-18 164.2 20.8 211 222-471 19-247 (725)
96 PRK08903 DnaA regulatory inact 99.6 7.9E-14 1.7E-18 142.6 18.6 202 224-469 11-224 (227)
97 COG0466 Lon ATP-dependent Lon 99.6 1.1E-14 2.3E-19 165.1 13.0 176 219-414 311-508 (782)
98 PRK14969 DNA polymerase III su 99.6 3.8E-14 8.3E-19 161.9 17.8 212 222-468 7-241 (527)
99 PRK14959 DNA polymerase III su 99.6 6.2E-14 1.4E-18 160.8 17.8 206 222-468 7-241 (624)
100 PRK14952 DNA polymerase III su 99.6 8.9E-14 1.9E-18 159.7 18.9 212 223-468 5-241 (584)
101 PRK05342 clpX ATP-dependent pr 99.6 1.1E-13 2.5E-18 153.3 19.1 179 230-411 69-322 (412)
102 TIGR03346 chaperone_ClpB ATP-d 99.6 6.4E-14 1.4E-18 168.7 18.5 203 225-452 167-397 (852)
103 PRK08084 DNA replication initi 99.6 3.5E-13 7.6E-18 139.1 20.9 206 224-468 15-233 (235)
104 PRK07764 DNA polymerase III su 99.6 8.6E-14 1.9E-18 165.4 18.5 212 223-468 7-243 (824)
105 PRK14957 DNA polymerase III su 99.5 1.1E-13 2.5E-18 157.5 18.3 205 222-467 7-240 (546)
106 PRK14970 DNA polymerase III su 99.5 1.1E-13 2.4E-18 151.6 17.2 214 221-469 7-231 (367)
107 PRK07133 DNA polymerase III su 99.5 1.4E-13 2.9E-18 160.1 18.7 213 221-468 8-240 (725)
108 PRK14953 DNA polymerase III su 99.5 2.1E-13 4.5E-18 154.4 19.7 212 222-468 7-241 (486)
109 PTZ00112 origin recognition co 99.5 2.3E-13 5E-18 157.5 20.0 216 229-472 753-1007(1164)
110 PRK08727 hypothetical protein; 99.5 9.7E-13 2.1E-17 135.6 21.9 210 224-470 12-230 (233)
111 COG0593 DnaA ATPase involved i 99.5 4.1E-13 9E-18 147.0 20.1 228 224-476 80-318 (408)
112 PRK09111 DNA polymerase III su 99.5 2.4E-13 5.2E-18 156.9 19.2 215 220-469 13-255 (598)
113 PRK14965 DNA polymerase III su 99.5 1.6E-13 3.6E-18 158.4 17.5 211 222-467 7-240 (576)
114 PRK05896 DNA polymerase III su 99.5 1.6E-13 3.5E-18 156.7 17.0 212 221-467 6-240 (605)
115 TIGR02640 gas_vesic_GvpN gas v 99.5 5.7E-13 1.2E-17 139.7 19.7 189 266-473 23-259 (262)
116 PF00308 Bac_DnaA: Bacterial d 99.5 2.6E-13 5.6E-18 138.6 16.6 203 225-451 2-216 (219)
117 PRK08451 DNA polymerase III su 99.5 4.4E-13 9.4E-18 152.2 19.7 205 222-467 5-238 (535)
118 PRK00440 rfc replication facto 99.5 6.5E-13 1.4E-17 141.8 19.7 208 219-469 5-224 (319)
119 PRK13407 bchI magnesium chelat 99.5 2E-13 4.4E-18 147.3 15.5 216 226-473 3-308 (334)
120 TIGR00390 hslU ATP-dependent p 99.5 5E-13 1.1E-17 146.2 18.0 177 231-411 12-343 (441)
121 PRK10787 DNA-binding ATP-depen 99.5 2E-13 4.4E-18 162.1 16.3 166 229-415 320-507 (784)
122 PRK06647 DNA polymerase III su 99.5 4.8E-13 1E-17 153.7 18.7 211 223-468 8-241 (563)
123 PRK14955 DNA polymerase III su 99.5 4E-13 8.7E-18 148.9 17.3 217 221-468 6-254 (397)
124 PRK06620 hypothetical protein; 99.5 7.7E-13 1.7E-17 134.7 17.9 197 224-468 9-213 (214)
125 PRK05642 DNA replication initi 99.5 1.4E-12 2.9E-17 134.7 19.3 212 224-468 12-232 (234)
126 PRK05201 hslU ATP-dependent pr 99.5 7.2E-13 1.6E-17 145.1 17.8 177 231-411 15-345 (443)
127 KOG0989 Replication factor C, 99.5 6.6E-13 1.4E-17 138.1 15.1 196 219-449 24-236 (346)
128 PRK06305 DNA polymerase III su 99.5 1.2E-12 2.7E-17 147.0 18.6 213 221-468 7-243 (451)
129 TIGR00382 clpX endopeptidase C 99.5 1.3E-12 2.9E-17 144.3 18.5 180 231-412 77-329 (413)
130 PRK14948 DNA polymerase III su 99.5 1.5E-12 3.2E-17 151.2 19.2 208 223-466 8-240 (620)
131 TIGR02903 spore_lon_C ATP-depe 99.5 2.3E-12 5E-17 149.9 20.7 218 225-470 148-429 (615)
132 PRK14954 DNA polymerase III su 99.5 1.7E-12 3.7E-17 150.2 19.4 216 222-468 7-254 (620)
133 CHL00081 chlI Mg-protoporyphyr 99.5 9E-13 2E-17 142.7 15.2 224 225-476 11-327 (350)
134 COG2812 DnaX DNA polymerase II 99.5 8.8E-13 1.9E-17 148.2 15.5 208 223-465 8-238 (515)
135 PRK14950 DNA polymerase III su 99.4 3E-12 6.4E-17 148.5 19.6 212 222-468 7-242 (585)
136 COG1224 TIP49 DNA helicase TIP 99.4 3.3E-12 7.2E-17 134.9 17.9 129 324-472 292-433 (450)
137 COG1474 CDC6 Cdc6-related prot 99.4 6.4E-12 1.4E-16 137.4 20.5 218 229-471 15-265 (366)
138 PF05673 DUF815: Protein of un 99.4 4.5E-12 9.7E-17 129.8 17.4 192 224-445 20-243 (249)
139 COG3829 RocR Transcriptional r 99.4 2.4E-13 5.2E-18 150.9 7.8 216 226-468 240-495 (560)
140 TIGR02639 ClpA ATP-dependent C 99.4 4E-12 8.8E-17 151.1 18.1 162 231-415 454-663 (731)
141 TIGR02030 BchI-ChlI magnesium 99.4 3.8E-12 8.2E-17 137.7 16.0 219 229-475 2-313 (337)
142 PRK11034 clpA ATP-dependent Cl 99.4 1.8E-12 3.8E-17 153.2 14.5 164 232-415 459-667 (758)
143 PRK14971 DNA polymerase III su 99.4 8.4E-12 1.8E-16 144.9 18.6 212 222-468 8-243 (614)
144 TIGR01650 PD_CobS cobaltochela 99.4 3.2E-12 7E-17 136.6 12.9 139 264-416 64-235 (327)
145 TIGR02442 Cob-chelat-sub cobal 99.4 4.5E-12 9.8E-17 148.2 15.3 213 229-473 2-306 (633)
146 PRK09087 hypothetical protein; 99.4 3E-11 6.4E-16 124.1 18.0 204 223-471 13-222 (226)
147 cd00009 AAA The AAA+ (ATPases 99.4 1.2E-11 2.6E-16 114.3 13.7 123 264-399 19-150 (151)
148 COG2204 AtoC Response regulato 99.3 2.9E-12 6.3E-17 142.3 10.5 212 227-465 137-385 (464)
149 COG0542 clpA ATP-binding subun 99.3 1.4E-10 3E-15 135.3 23.4 166 224-413 163-345 (786)
150 PHA02244 ATPase-like protein 99.3 5.8E-11 1.3E-15 128.5 17.7 148 228-403 94-263 (383)
151 TIGR03345 VI_ClpV1 type VI sec 99.3 6.6E-11 1.4E-15 142.3 18.5 195 231-448 566-827 (852)
152 TIGR00368 Mg chelatase-related 99.3 6.6E-11 1.4E-15 134.3 17.1 213 227-469 188-497 (499)
153 PRK15424 propionate catabolism 99.3 1.3E-11 2.8E-16 141.0 11.4 212 228-464 216-478 (538)
154 COG3604 FhlA Transcriptional r 99.3 9.7E-12 2.1E-16 136.6 9.8 200 227-451 219-456 (550)
155 TIGR01817 nifA Nif-specific re 99.3 1.5E-11 3.4E-16 141.3 11.5 213 225-465 190-439 (534)
156 PF05621 TniB: Bacterial TniB 99.3 1.6E-10 3.5E-15 121.8 17.0 218 231-467 34-285 (302)
157 COG0714 MoxR-like ATPases [Gen 99.3 1.6E-10 3.5E-15 125.1 17.7 128 266-413 45-202 (329)
158 TIGR02329 propionate_PrpR prop 99.3 2.6E-11 5.6E-16 138.5 11.9 214 227-466 208-465 (526)
159 PRK09112 DNA polymerase III su 99.2 2.2E-10 4.7E-15 125.0 18.3 189 226-446 18-243 (351)
160 TIGR03015 pepcterm_ATPase puta 99.2 5E-10 1.1E-14 116.9 20.0 190 266-471 45-266 (269)
161 TIGR03346 chaperone_ClpB ATP-d 99.2 1.7E-10 3.7E-15 139.3 18.3 198 231-451 565-825 (852)
162 PRK10865 protein disaggregatio 99.2 2.1E-10 4.5E-15 138.3 19.0 163 230-416 567-781 (857)
163 PRK11388 DNA-binding transcrip 99.2 4.1E-11 8.9E-16 140.7 11.9 215 227-468 321-568 (638)
164 TIGR02974 phageshock_pspF psp 99.2 6.2E-11 1.3E-15 128.3 12.3 192 233-451 1-233 (329)
165 PRK11608 pspF phage shock prot 99.2 1.2E-10 2.6E-15 126.0 14.2 194 229-451 4-240 (326)
166 PRK10820 DNA-binding transcrip 99.2 7.9E-11 1.7E-15 135.0 13.5 212 226-464 199-447 (520)
167 smart00350 MCM minichromosome 99.2 1.6E-10 3.4E-15 132.1 15.7 224 232-471 204-504 (509)
168 PRK13531 regulatory ATPase Rav 99.2 5.1E-10 1.1E-14 125.0 18.7 213 232-475 21-287 (498)
169 COG1221 PspF Transcriptional r 99.2 5.1E-11 1.1E-15 130.3 10.1 200 226-453 73-311 (403)
170 PRK07471 DNA polymerase III su 99.2 3.7E-10 8E-15 123.8 16.8 185 225-443 13-238 (365)
171 COG0542 clpA ATP-binding subun 99.2 9.7E-11 2.1E-15 136.6 12.5 160 231-415 491-706 (786)
172 TIGR00764 lon_rel lon-related 99.2 4.9E-10 1.1E-14 130.3 18.3 103 368-472 267-392 (608)
173 CHL00095 clpC Clp protease ATP 99.2 4.3E-10 9.4E-15 135.4 18.5 162 231-416 509-734 (821)
174 KOG1942 DNA helicase, TBP-inte 99.2 8E-10 1.7E-14 114.2 17.1 131 323-473 296-440 (456)
175 TIGR00678 holB DNA polymerase 99.2 4.1E-10 8.9E-15 111.9 14.3 149 262-434 12-183 (188)
176 smart00382 AAA ATPases associa 99.2 2.3E-10 4.9E-15 104.5 11.1 126 264-401 2-147 (148)
177 PRK05564 DNA polymerase III su 99.2 5.3E-10 1.1E-14 120.2 15.5 170 229-435 2-183 (313)
178 TIGR02031 BchD-ChlD magnesium 99.1 6.6E-10 1.4E-14 128.9 17.1 186 266-473 18-260 (589)
179 PRK05022 anaerobic nitric oxid 99.1 1.7E-10 3.7E-15 132.0 11.7 199 229-452 185-421 (509)
180 PRK15429 formate hydrogenlyase 99.1 4.9E-10 1.1E-14 132.7 15.2 199 227-451 372-609 (686)
181 KOG1969 DNA replication checkp 99.1 1.2E-09 2.5E-14 124.4 17.1 214 217-454 257-518 (877)
182 PF01078 Mg_chelatase: Magnesi 99.1 7.2E-11 1.6E-15 118.5 6.1 142 229-403 1-204 (206)
183 PF06068 TIP49: TIP49 C-termin 99.1 1.6E-09 3.5E-14 116.5 16.7 66 229-301 22-89 (398)
184 TIGR00602 rad24 checkpoint pro 99.1 1.1E-09 2.4E-14 126.9 16.4 259 218-502 71-390 (637)
185 PF07728 AAA_5: AAA domain (dy 99.1 2.5E-11 5.4E-16 114.4 2.1 113 266-392 1-139 (139)
186 COG2607 Predicted ATPase (AAA+ 99.1 4.5E-09 9.8E-14 106.5 18.3 168 224-421 53-246 (287)
187 PRK09862 putative ATP-dependen 99.1 1.4E-09 3.1E-14 123.1 16.3 209 228-469 188-490 (506)
188 KOG0741 AAA+-type ATPase [Post 99.1 1.9E-09 4.2E-14 118.8 15.5 159 242-412 522-684 (744)
189 PRK11331 5-methylcytosine-spec 99.1 1.2E-09 2.7E-14 121.1 14.1 141 230-400 174-357 (459)
190 COG0470 HolB ATPase involved i 99.0 4.9E-09 1.1E-13 112.1 16.8 145 231-406 1-173 (325)
191 PF00158 Sigma54_activat: Sigm 99.0 9.5E-10 2.1E-14 107.9 9.8 122 233-378 1-143 (168)
192 COG0606 Predicted ATPase with 99.0 6.8E-10 1.5E-14 122.3 9.5 210 227-469 175-483 (490)
193 COG1219 ClpX ATP-dependent pro 99.0 7.1E-10 1.5E-14 116.0 9.0 132 231-364 61-203 (408)
194 PRK07399 DNA polymerase III su 99.0 3.9E-09 8.4E-14 113.6 15.0 183 229-445 2-223 (314)
195 PRK08058 DNA polymerase III su 99.0 6.5E-09 1.4E-13 112.7 16.7 154 229-412 3-180 (329)
196 PRK08116 hypothetical protein; 99.0 4.2E-09 9.1E-14 110.9 13.7 123 264-403 114-251 (268)
197 PF07724 AAA_2: AAA domain (Cd 99.0 9.1E-10 2E-14 108.4 8.0 110 266-380 5-131 (171)
198 PRK04132 replication factor C 99.0 7E-09 1.5E-13 123.3 16.8 170 267-467 567-750 (846)
199 KOG0991 Replication factor C, 99.0 2.6E-09 5.7E-14 107.6 11.0 203 220-466 16-232 (333)
200 PRK05707 DNA polymerase III su 99.0 5.8E-09 1.3E-13 112.9 14.3 150 261-435 19-196 (328)
201 COG1220 HslU ATP-dependent pro 99.0 4.8E-09 1E-13 110.6 12.2 84 324-411 251-346 (444)
202 smart00763 AAA_PrkA PrkA AAA d 98.9 8.5E-09 1.8E-13 111.7 13.7 83 229-318 48-143 (361)
203 TIGR02915 PEP_resp_reg putativ 98.9 5.6E-09 1.2E-13 117.2 12.4 209 229-464 137-382 (445)
204 COG1239 ChlI Mg-chelatase subu 98.9 2.4E-08 5.1E-13 108.9 14.3 215 227-473 13-324 (423)
205 PTZ00111 DNA replication licen 98.9 3.1E-08 6.6E-13 117.6 15.9 131 263-409 491-652 (915)
206 PRK13765 ATP-dependent proteas 98.9 1.2E-08 2.5E-13 118.8 12.2 100 369-470 277-399 (637)
207 PF14532 Sigma54_activ_2: Sigm 98.9 2.9E-09 6.3E-14 100.7 6.0 105 234-377 1-108 (138)
208 PRK11361 acetoacetate metaboli 98.9 1.4E-08 3E-13 114.4 12.3 209 229-467 141-389 (457)
209 PRK10923 glnG nitrogen regulat 98.9 1.8E-08 3.9E-13 114.0 13.2 209 229-468 136-385 (469)
210 PRK12377 putative replication 98.8 2.9E-08 6.3E-13 103.3 13.1 99 265-378 102-205 (248)
211 PRK08181 transposase; Validate 98.8 3.6E-08 7.9E-13 103.8 13.5 98 265-378 107-208 (269)
212 PRK06964 DNA polymerase III su 98.8 2.8E-08 6E-13 108.0 11.8 134 261-413 18-203 (342)
213 PRK07952 DNA replication prote 98.8 5.1E-08 1.1E-12 101.3 13.2 130 227-378 68-204 (244)
214 COG3283 TyrR Transcriptional r 98.8 2.2E-08 4.7E-13 106.3 10.4 209 226-464 199-442 (511)
215 PF13177 DNA_pol3_delta2: DNA 98.8 2.6E-08 5.7E-13 97.1 10.4 136 235-400 1-160 (162)
216 KOG2680 DNA helicase TIP49, TB 98.8 1.6E-07 3.4E-12 97.9 15.6 132 324-475 289-433 (454)
217 KOG0745 Putative ATP-dependent 98.8 2.4E-08 5.2E-13 108.3 9.8 98 266-363 228-331 (564)
218 PRK06526 transposase; Provisio 98.8 3.7E-08 8.1E-13 103.0 10.9 100 264-379 98-201 (254)
219 PRK15115 response regulator Gl 98.7 5.6E-08 1.2E-12 109.1 12.4 205 232-467 135-380 (444)
220 KOG0990 Replication factor C, 98.7 9.9E-08 2.1E-12 100.5 12.9 201 216-453 26-239 (360)
221 TIGR01818 ntrC nitrogen regula 98.7 5E-08 1.1E-12 110.1 11.0 209 230-468 133-381 (463)
222 PRK06871 DNA polymerase III su 98.7 2.7E-07 5.9E-12 99.6 15.5 133 262-413 22-178 (325)
223 PF07726 AAA_3: ATPase family 98.7 1.3E-08 2.8E-13 94.8 4.5 111 266-392 1-129 (131)
224 PF01637 Arch_ATPase: Archaeal 98.7 2.6E-07 5.6E-12 93.2 14.4 183 234-441 2-232 (234)
225 PRK06835 DNA replication prote 98.7 1.4E-07 3E-12 102.2 13.0 109 265-388 184-303 (329)
226 PRK07993 DNA polymerase III su 98.7 1.7E-07 3.8E-12 101.7 13.8 153 261-436 21-198 (334)
227 KOG1514 Origin recognition com 98.7 2.9E-07 6.2E-12 105.2 15.9 194 266-474 424-658 (767)
228 PRK08769 DNA polymerase III su 98.7 3.1E-07 6.6E-12 99.0 15.3 154 261-438 23-204 (319)
229 PRK13406 bchD magnesium chelat 98.7 1.7E-07 3.6E-12 108.5 13.3 189 265-473 26-252 (584)
230 PRK08939 primosomal protein Dn 98.6 1.4E-07 3.1E-12 101.2 11.1 100 263-378 155-260 (306)
231 PRK10365 transcriptional regul 98.6 1.4E-07 3.1E-12 105.6 11.0 205 232-467 140-385 (441)
232 PRK09183 transposase/IS protei 98.6 2.6E-07 5.7E-12 96.9 11.9 100 264-378 102-205 (259)
233 KOG2227 Pre-initiation complex 98.6 1.2E-06 2.5E-11 96.4 16.7 205 230-456 149-384 (529)
234 COG3284 AcoR Transcriptional a 98.6 7.2E-08 1.6E-12 109.5 7.2 204 235-469 317-555 (606)
235 COG1484 DnaC DNA replication p 98.6 5E-07 1.1E-11 94.6 12.3 70 264-335 105-179 (254)
236 KOG2035 Replication factor C, 98.5 2.7E-06 5.8E-11 88.2 16.5 228 220-502 2-266 (351)
237 PRK06090 DNA polymerase III su 98.5 1.5E-06 3.3E-11 93.6 15.5 130 261-412 22-178 (319)
238 PF13173 AAA_14: AAA domain 98.5 5.8E-07 1.3E-11 83.9 10.8 120 265-405 3-126 (128)
239 PF03215 Rad17: Rad17 cell cyc 98.5 1.2E-06 2.7E-11 100.1 14.9 212 217-452 5-269 (519)
240 PF01695 IstB_IS21: IstB-like 98.5 2.6E-07 5.6E-12 91.6 8.0 99 264-378 47-149 (178)
241 PF03969 AFG1_ATPase: AFG1-lik 98.5 4.5E-07 9.7E-12 99.4 9.8 141 261-428 59-207 (362)
242 PRK06921 hypothetical protein; 98.5 1.2E-06 2.5E-11 92.5 12.1 68 264-334 117-188 (266)
243 KOG1051 Chaperone HSP104 and r 98.5 1E-06 2.2E-11 104.8 12.8 128 231-378 562-710 (898)
244 PRK08699 DNA polymerase III su 98.5 8.4E-07 1.8E-11 96.1 11.0 132 261-412 18-183 (325)
245 PF13401 AAA_22: AAA domain; P 98.4 7.1E-07 1.5E-11 82.6 7.9 98 265-377 5-126 (131)
246 COG1241 MCM2 Predicted ATPase 98.3 1.2E-06 2.5E-11 102.1 8.7 188 265-472 320-593 (682)
247 PF12775 AAA_7: P-loop contain 98.3 3E-06 6.5E-11 89.6 9.8 164 227-415 6-194 (272)
248 PF05729 NACHT: NACHT domain 98.3 1.2E-05 2.5E-10 76.9 12.8 142 266-416 2-165 (166)
249 cd01120 RecA-like_NTPases RecA 98.3 3.5E-06 7.6E-11 79.9 9.1 110 267-380 2-138 (165)
250 PF06480 FtsH_ext: FtsH Extrac 98.2 9.7E-07 2.1E-11 79.1 4.5 95 65-163 2-108 (110)
251 COG1485 Predicted ATPase [Gene 98.2 4.9E-06 1.1E-10 89.2 10.5 137 262-426 63-208 (367)
252 KOG0478 DNA replication licens 98.2 1.9E-05 4.1E-10 90.3 15.3 125 264-404 462-616 (804)
253 COG3267 ExeA Type II secretory 98.2 3.3E-05 7.1E-10 79.7 15.7 183 267-465 54-267 (269)
254 PF00493 MCM: MCM2/3/5 family 98.2 3E-07 6.5E-12 99.8 0.9 217 232-471 25-326 (331)
255 PF12774 AAA_6: Hydrolytic ATP 98.2 1.6E-05 3.5E-10 82.1 12.4 124 266-410 34-176 (231)
256 PRK05917 DNA polymerase III su 98.2 6.1E-05 1.3E-09 80.1 16.6 122 261-401 16-154 (290)
257 KOG2383 Predicted ATPase [Gene 98.1 1.9E-05 4.1E-10 85.7 12.3 160 261-448 111-297 (467)
258 KOG0480 DNA replication licens 98.1 1.1E-05 2.5E-10 91.4 10.7 222 229-471 343-643 (764)
259 TIGR02237 recomb_radB DNA repa 98.1 9.9E-06 2.1E-10 81.7 9.4 111 264-377 12-148 (209)
260 KOG1970 Checkpoint RAD17-RFC c 98.1 3.2E-05 7E-10 86.7 14.0 210 219-451 70-320 (634)
261 PLN03210 Resistant to P. syrin 98.1 4.4E-05 9.5E-10 95.9 16.5 177 226-436 179-389 (1153)
262 PF00931 NB-ARC: NB-ARC domain 98.0 9.1E-05 2E-09 77.9 14.5 157 264-443 19-202 (287)
263 PF13191 AAA_16: AAA ATPase do 98.0 9.2E-06 2E-10 79.4 5.8 59 233-300 2-63 (185)
264 KOG0482 DNA replication licens 98.0 1.9E-05 4.1E-10 87.5 8.1 223 232-471 343-638 (721)
265 cd01124 KaiC KaiC is a circadi 97.9 6.4E-05 1.4E-09 73.9 10.7 70 267-336 2-108 (187)
266 TIGR02688 conserved hypothetic 97.9 0.00022 4.7E-09 79.1 15.0 75 238-335 194-272 (449)
267 PRK11823 DNA repair protein Ra 97.9 6.7E-05 1.5E-09 84.8 11.4 78 261-338 77-171 (446)
268 PRK07276 DNA polymerase III su 97.8 0.0003 6.4E-09 75.0 14.5 128 262-411 22-172 (290)
269 KOG2170 ATPase of the AAA+ sup 97.8 0.0012 2.6E-08 69.7 18.0 127 231-378 82-224 (344)
270 cd01121 Sms Sms (bacterial rad 97.8 9.7E-05 2.1E-09 81.5 10.6 78 261-338 79-173 (372)
271 PHA00729 NTP-binding motif con 97.8 7.5E-05 1.6E-09 76.6 8.9 24 266-289 19-42 (226)
272 TIGR01618 phage_P_loop phage n 97.8 5.8E-05 1.3E-09 77.3 8.1 73 263-337 11-95 (220)
273 PRK07132 DNA polymerase III su 97.8 0.00052 1.1E-08 73.6 15.4 127 262-412 16-160 (299)
274 PRK05818 DNA polymerase III su 97.8 0.00017 3.6E-09 75.4 11.2 121 262-401 5-147 (261)
275 PRK09361 radB DNA repair and r 97.8 0.00012 2.6E-09 74.8 9.9 115 261-377 20-160 (225)
276 PF00910 RNA_helicase: RNA hel 97.8 6.5E-05 1.4E-09 68.1 6.9 23 267-289 1-23 (107)
277 KOG2228 Origin recognition com 97.7 0.00024 5.3E-09 75.8 10.8 160 232-414 25-219 (408)
278 PRK06067 flagellar accessory p 97.7 0.00024 5.2E-09 73.1 10.2 40 260-299 21-63 (234)
279 TIGR02012 tigrfam_recA protein 97.7 0.00022 4.9E-09 77.0 10.3 117 261-377 52-190 (321)
280 COG1618 Predicted nucleotide k 97.6 0.00023 5E-09 68.9 9.0 27 262-288 3-29 (179)
281 COG1116 TauB ABC-type nitrate/ 97.6 6.6E-05 1.4E-09 77.4 5.7 30 258-287 21-52 (248)
282 cd01394 radB RadB. The archaea 97.6 0.00035 7.7E-09 70.9 11.0 116 261-378 16-157 (218)
283 TIGR02858 spore_III_AA stage I 97.6 0.00022 4.8E-09 75.4 9.1 113 265-399 112-256 (270)
284 PRK00131 aroK shikimate kinase 97.6 0.0002 4.3E-09 69.4 8.1 33 263-295 3-35 (175)
285 PF05707 Zot: Zonular occluden 97.6 9.6E-05 2.1E-09 74.1 6.0 124 267-402 3-147 (193)
286 PRK08533 flagellar accessory p 97.6 0.00041 8.9E-09 71.6 10.6 74 263-336 23-130 (230)
287 cd03283 ABC_MutS-like MutS-lik 97.6 0.00031 6.6E-09 71.0 9.3 105 265-383 26-152 (199)
288 COG1373 Predicted ATPase (AAA+ 97.6 0.0026 5.7E-08 71.0 17.4 123 266-408 39-161 (398)
289 cd00983 recA RecA is a bacter 97.5 0.00042 9E-09 75.0 9.9 114 263-376 54-189 (325)
290 PRK15455 PrkA family serine pr 97.5 0.00011 2.3E-09 84.2 5.6 64 228-297 73-137 (644)
291 PRK08118 topology modulation p 97.5 0.00016 3.4E-09 71.0 6.1 33 266-298 3-35 (167)
292 KOG1968 Replication factor C, 97.5 0.00027 5.8E-09 85.1 9.0 211 219-450 308-535 (871)
293 PF07693 KAP_NTPase: KAP famil 97.5 0.0025 5.5E-08 68.4 15.8 78 322-415 171-264 (325)
294 PF13207 AAA_17: AAA domain; P 97.5 8.3E-05 1.8E-09 68.0 3.6 30 267-296 2-31 (121)
295 TIGR00416 sms DNA repair prote 97.5 0.00069 1.5E-08 76.8 11.5 77 261-337 91-184 (454)
296 PRK14722 flhF flagellar biosyn 97.5 0.00039 8.4E-09 76.6 9.0 110 263-387 136-267 (374)
297 COG5271 MDN1 AAA ATPase contai 97.5 0.00042 9.1E-09 85.2 9.6 135 264-416 1543-1705(4600)
298 PRK12339 2-phosphoglycerate ki 97.4 0.0018 3.9E-08 65.4 12.7 186 264-473 3-193 (197)
299 COG4650 RtcR Sigma54-dependent 97.4 0.00097 2.1E-08 69.9 10.6 77 260-336 204-295 (531)
300 PRK09376 rho transcription ter 97.4 0.00056 1.2E-08 75.4 9.0 72 267-338 172-271 (416)
301 PF13671 AAA_33: AAA domain; P 97.4 0.00059 1.3E-08 64.0 7.9 36 267-304 2-37 (143)
302 KOG2543 Origin recognition com 97.4 0.0032 6.9E-08 68.5 14.2 162 231-415 6-194 (438)
303 PRK04296 thymidine kinase; Pro 97.4 0.0006 1.3E-08 68.2 8.3 70 266-335 4-90 (190)
304 cd01393 recA_like RecA is a b 97.4 0.00052 1.1E-08 69.9 7.9 116 261-377 16-167 (226)
305 KOG0477 DNA replication licens 97.4 0.00095 2.1E-08 76.0 10.4 62 232-295 450-513 (854)
306 PRK13949 shikimate kinase; Pro 97.3 0.0014 3E-08 64.5 10.4 31 266-296 3-33 (169)
307 PRK07261 topology modulation p 97.3 0.0003 6.5E-09 69.2 5.7 33 267-299 3-35 (171)
308 PF06745 KaiC: KaiC; InterPro 97.3 0.0012 2.7E-08 67.4 10.4 97 260-362 15-148 (226)
309 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00071 1.5E-08 69.3 8.6 116 261-377 16-168 (235)
310 KOG1051 Chaperone HSP104 and r 97.3 0.0013 2.8E-08 78.9 11.9 160 230-414 185-363 (898)
311 PRK00771 signal recognition pa 97.3 0.0039 8.4E-08 70.3 15.1 39 262-300 93-134 (437)
312 PRK14532 adenylate kinase; Pro 97.3 0.00074 1.6E-08 66.9 8.4 36 266-303 2-37 (188)
313 PRK05973 replicative DNA helic 97.3 0.0013 2.9E-08 68.1 10.5 39 261-299 61-102 (237)
314 PF14516 AAA_35: AAA-like doma 97.3 0.011 2.5E-07 64.3 18.2 158 266-435 33-232 (331)
315 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0019 4.1E-08 66.8 11.6 40 260-299 17-59 (237)
316 KOG0481 DNA replication licens 97.3 0.00076 1.7E-08 75.2 8.8 140 265-415 365-533 (729)
317 cd00046 DEXDc DEAD-like helica 97.3 0.0016 3.5E-08 59.0 9.8 23 266-288 2-24 (144)
318 PRK10536 hypothetical protein; 97.3 0.00089 1.9E-08 70.0 8.8 45 229-287 53-97 (262)
319 PRK06762 hypothetical protein; 97.3 0.00093 2E-08 64.8 8.4 40 264-303 2-41 (166)
320 PF00437 T2SE: Type II/IV secr 97.3 0.00032 7E-09 73.7 5.2 101 224-334 97-208 (270)
321 cd01128 rho_factor Transcripti 97.2 0.0024 5.2E-08 66.8 11.2 25 266-290 18-42 (249)
322 cd00984 DnaB_C DnaB helicase C 97.2 0.002 4.2E-08 66.4 10.4 39 260-298 9-51 (242)
323 PF06309 Torsin: Torsin; Inte 97.2 0.002 4.2E-08 60.3 9.2 52 231-288 25-77 (127)
324 cd01122 GP4d_helicase GP4d_hel 97.2 0.0016 3.5E-08 68.3 9.8 39 260-298 26-68 (271)
325 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0027 5.8E-08 64.8 11.0 113 264-386 29-161 (213)
326 PF03266 NTPase_1: NTPase; In 97.2 0.0007 1.5E-08 66.6 6.3 27 266-292 1-30 (168)
327 COG0563 Adk Adenylate kinase a 97.2 0.0011 2.4E-08 65.8 7.7 34 266-301 2-35 (178)
328 PRK12723 flagellar biosynthesi 97.2 0.0021 4.7E-08 71.3 10.6 129 263-406 173-327 (388)
329 PRK09354 recA recombinase A; P 97.2 0.0017 3.7E-08 70.9 9.5 112 264-375 60-193 (349)
330 cd03216 ABC_Carb_Monos_I This 97.2 0.0014 3E-08 63.8 8.1 105 264-382 26-145 (163)
331 PRK13948 shikimate kinase; Pro 97.1 0.0015 3.2E-08 65.2 8.2 42 263-306 9-50 (182)
332 PF13604 AAA_30: AAA domain; P 97.1 0.00097 2.1E-08 67.1 6.8 97 266-378 20-132 (196)
333 COG4619 ABC-type uncharacteriz 97.1 0.0039 8.4E-08 61.0 10.4 22 266-287 31-52 (223)
334 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0045 9.8E-08 63.2 11.4 41 260-300 12-55 (224)
335 TIGR02782 TrbB_P P-type conjug 97.1 0.00046 1E-08 74.1 4.3 69 265-333 133-214 (299)
336 PRK04040 adenylate kinase; Pro 97.1 0.0061 1.3E-07 61.0 12.0 30 264-293 2-33 (188)
337 PRK14974 cell division protein 97.1 0.004 8.7E-08 67.9 11.3 73 263-335 139-234 (336)
338 COG3854 SpoIIIAA ncharacterize 97.0 0.0034 7.4E-08 64.2 9.7 70 266-335 139-230 (308)
339 PRK04841 transcriptional regul 97.0 0.0096 2.1E-07 72.8 15.8 150 266-436 34-219 (903)
340 cd01130 VirB11-like_ATPase Typ 97.0 0.0008 1.7E-08 67.0 5.2 69 265-333 26-110 (186)
341 cd00464 SK Shikimate kinase (S 97.0 0.0011 2.3E-08 63.1 5.8 37 266-304 1-37 (154)
342 PRK13947 shikimate kinase; Pro 97.0 0.0006 1.3E-08 66.3 4.1 31 266-296 3-33 (171)
343 PRK13946 shikimate kinase; Pro 97.0 0.0021 4.5E-08 63.9 8.0 34 263-296 9-42 (184)
344 COG0703 AroK Shikimate kinase 97.0 0.0019 4.1E-08 63.5 7.5 32 265-296 3-34 (172)
345 TIGR02238 recomb_DMC1 meiotic 97.0 0.0021 4.5E-08 69.5 8.6 113 262-375 94-242 (313)
346 cd03238 ABC_UvrA The excision 97.0 0.0037 8.1E-08 62.0 9.6 113 266-399 23-162 (176)
347 COG4178 ABC-type uncharacteriz 97.0 0.0019 4.1E-08 74.7 8.4 55 311-380 521-575 (604)
348 PF05272 VirE: Virulence-assoc 97.0 0.003 6.6E-08 63.8 8.9 125 240-400 34-169 (198)
349 PRK04301 radA DNA repair and r 97.0 0.0027 5.8E-08 68.7 9.0 116 261-377 99-251 (317)
350 PLN02674 adenylate kinase 97.0 0.0034 7.4E-08 65.4 9.3 39 263-303 30-68 (244)
351 cd01131 PilT Pilus retraction 97.0 0.001 2.2E-08 67.0 5.3 66 267-332 4-83 (198)
352 PRK05800 cobU adenosylcobinami 97.0 0.0038 8.2E-08 61.5 9.2 33 266-298 3-35 (170)
353 PRK03839 putative kinase; Prov 97.0 0.00063 1.4E-08 67.0 3.7 31 266-296 2-32 (180)
354 TIGR02236 recomb_radA DNA repa 97.0 0.0031 6.7E-08 67.9 9.3 115 261-376 92-244 (310)
355 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.004 8.7E-08 63.7 9.7 38 260-297 16-56 (229)
356 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0036 7.7E-08 65.8 9.4 38 261-298 33-73 (259)
357 PRK00625 shikimate kinase; Pro 96.9 0.00078 1.7E-08 66.6 4.0 31 266-296 2-32 (173)
358 PF00448 SRP54: SRP54-type pro 96.9 0.0025 5.4E-08 64.3 7.6 109 264-384 1-132 (196)
359 TIGR01420 pilT_fam pilus retra 96.9 0.0019 4.1E-08 70.7 7.2 68 266-333 124-205 (343)
360 PLN03187 meiotic recombination 96.9 0.0033 7.1E-08 68.8 8.9 113 262-375 124-272 (344)
361 PRK09519 recA DNA recombinatio 96.9 0.0037 8E-08 74.6 10.0 114 262-375 58-193 (790)
362 PF10236 DAP3: Mitochondrial r 96.9 0.037 8E-07 59.8 16.8 130 312-442 142-308 (309)
363 PRK12724 flagellar biosynthesi 96.9 0.012 2.6E-07 65.7 13.3 111 264-386 223-353 (432)
364 PRK04328 hypothetical protein; 96.9 0.0085 1.8E-07 62.6 11.6 39 260-298 19-60 (249)
365 COG1066 Sms Predicted ATP-depe 96.9 0.007 1.5E-07 66.6 11.1 150 266-419 95-261 (456)
366 cd00227 CPT Chloramphenicol (C 96.9 0.0011 2.3E-08 65.3 4.5 38 265-302 3-40 (175)
367 smart00534 MUTSac ATPase domai 96.9 0.0056 1.2E-07 60.9 9.7 19 267-285 2-20 (185)
368 cd02020 CMPK Cytidine monophos 96.9 0.0029 6.3E-08 59.4 7.3 30 267-296 2-31 (147)
369 PRK10867 signal recognition pa 96.9 0.02 4.3E-07 64.6 15.0 74 262-335 98-195 (433)
370 COG2874 FlaH Predicted ATPases 96.9 0.0061 1.3E-07 61.8 9.7 127 250-388 12-176 (235)
371 PLN02200 adenylate kinase fami 96.8 0.0014 3E-08 68.0 5.2 42 260-303 39-80 (234)
372 COG5245 DYN1 Dynein, heavy cha 96.8 0.0029 6.3E-08 77.7 8.3 179 262-453 1492-1718(3164)
373 PTZ00035 Rad51 protein; Provis 96.8 0.0047 1E-07 67.5 9.4 114 261-375 115-264 (337)
374 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0068 1.5E-07 63.1 10.3 36 267-302 2-40 (249)
375 smart00487 DEXDc DEAD-like hel 96.8 0.01 2.2E-07 57.3 10.8 33 265-297 25-62 (201)
376 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.001 2.3E-08 65.4 3.8 34 267-302 2-35 (183)
377 cd02027 APSK Adenosine 5'-phos 96.8 0.0047 1E-07 59.4 8.1 36 267-302 2-40 (149)
378 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0066 1.4E-07 57.9 9.0 100 264-382 26-130 (144)
379 PRK13894 conjugal transfer ATP 96.8 0.0016 3.4E-08 70.6 5.1 69 265-333 149-229 (319)
380 TIGR02655 circ_KaiC circadian 96.8 0.0043 9.4E-08 71.0 8.9 75 262-336 261-366 (484)
381 PRK14531 adenylate kinase; Pro 96.7 0.0014 3.1E-08 65.0 4.3 35 265-301 3-37 (183)
382 PRK13833 conjugal transfer pro 96.7 0.0017 3.7E-08 70.3 5.2 69 265-333 145-225 (323)
383 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0041 9E-08 67.3 8.1 115 261-376 93-243 (316)
384 PF00406 ADK: Adenylate kinase 96.7 0.0055 1.2E-07 58.6 8.1 35 269-305 1-35 (151)
385 PRK06217 hypothetical protein; 96.7 0.0013 2.9E-08 65.1 4.0 31 266-296 3-33 (183)
386 cd01125 repA Hexameric Replica 96.7 0.0059 1.3E-07 63.1 8.9 33 267-299 4-51 (239)
387 PRK13900 type IV secretion sys 96.7 0.0027 5.8E-08 69.2 6.5 70 264-333 160-245 (332)
388 KOG3347 Predicted nucleotide k 96.7 0.0012 2.6E-08 63.2 3.2 34 266-301 9-42 (176)
389 cd03243 ABC_MutS_homologs The 96.7 0.0057 1.2E-07 61.6 8.3 21 266-286 31-51 (202)
390 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0037 8.1E-08 65.9 7.2 95 227-334 56-160 (264)
391 COG1121 ZnuC ABC-type Mn/Zn tr 96.7 0.0082 1.8E-07 62.7 9.6 57 311-381 145-201 (254)
392 PF13481 AAA_25: AAA domain; P 96.7 0.0047 1E-07 61.1 7.5 72 267-338 35-156 (193)
393 PLN03186 DNA repair protein RA 96.7 0.0054 1.2E-07 67.1 8.5 113 263-376 122-270 (342)
394 COG4088 Predicted nucleotide k 96.7 0.007 1.5E-07 61.0 8.4 22 267-288 4-25 (261)
395 cd02021 GntK Gluconate kinase 96.7 0.0015 3.3E-08 62.1 3.7 33 267-301 2-34 (150)
396 PRK11889 flhF flagellar biosyn 96.7 0.012 2.7E-07 65.1 11.1 94 237-334 217-331 (436)
397 cd01428 ADK Adenylate kinase ( 96.7 0.0016 3.4E-08 64.5 3.8 34 267-302 2-35 (194)
398 PRK13764 ATPase; Provisional 96.7 0.0026 5.7E-08 74.1 6.1 70 264-334 257-335 (602)
399 cd00544 CobU Adenosylcobinamid 96.6 0.0083 1.8E-07 59.1 8.8 71 267-339 2-89 (169)
400 PRK13695 putative NTPase; Prov 96.6 0.022 4.7E-07 55.9 11.8 23 266-288 2-24 (174)
401 TIGR02655 circ_KaiC circadian 96.6 0.012 2.7E-07 67.3 11.5 40 260-299 17-60 (484)
402 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0075 1.6E-07 58.0 8.3 104 265-383 26-144 (157)
403 PF04665 Pox_A32: Poxvirus A32 96.6 0.028 6E-07 58.5 13.0 133 263-414 12-170 (241)
404 PRK10416 signal recognition pa 96.6 0.023 5.1E-07 61.6 13.0 37 262-298 112-151 (318)
405 PTZ00088 adenylate kinase 1; P 96.6 0.002 4.4E-08 66.5 4.6 33 263-295 5-37 (229)
406 PRK08154 anaerobic benzoate ca 96.6 0.0065 1.4E-07 65.5 8.6 34 262-295 131-164 (309)
407 COG2884 FtsE Predicted ATPase 96.6 0.011 2.4E-07 59.0 9.3 34 255-288 17-52 (223)
408 TIGR02788 VirB11 P-type DNA tr 96.6 0.0035 7.6E-08 67.6 6.4 73 261-333 141-228 (308)
409 PRK06581 DNA polymerase III su 96.6 0.028 6.1E-07 58.3 12.4 136 264-418 15-165 (263)
410 cd03222 ABC_RNaseL_inhibitor T 96.6 0.01 2.3E-07 58.9 9.1 102 266-381 27-134 (177)
411 PRK13808 adenylate kinase; Pro 96.6 0.011 2.4E-07 64.2 10.0 33 267-301 3-35 (333)
412 KOG0479 DNA replication licens 96.6 0.028 6.1E-07 64.0 13.2 153 232-402 302-486 (818)
413 cd03246 ABCC_Protease_Secretio 96.6 0.007 1.5E-07 59.3 7.8 102 266-381 30-158 (173)
414 cd03228 ABCC_MRP_Like The MRP 96.6 0.0095 2E-07 58.3 8.7 103 264-382 28-158 (171)
415 TIGR01313 therm_gnt_kin carboh 96.6 0.0017 3.6E-08 62.8 3.3 32 267-300 1-32 (163)
416 PF01745 IPT: Isopentenyl tran 96.6 0.003 6.5E-08 64.1 5.1 129 266-411 3-136 (233)
417 PRK14529 adenylate kinase; Pro 96.6 0.006 1.3E-07 62.8 7.4 34 266-301 2-35 (223)
418 cd03223 ABCD_peroxisomal_ALDP 96.6 0.014 3E-07 57.0 9.7 99 265-380 28-149 (166)
419 PRK06696 uridine kinase; Valid 96.5 0.0041 9E-08 63.7 6.2 38 264-301 22-62 (223)
420 PRK06547 hypothetical protein; 96.5 0.0025 5.5E-08 62.9 4.5 33 263-295 14-46 (172)
421 PTZ00202 tuzin; Provisional 96.5 0.067 1.5E-06 60.0 15.7 64 227-299 258-321 (550)
422 PRK00279 adk adenylate kinase; 96.5 0.0052 1.1E-07 62.5 6.8 29 267-295 3-31 (215)
423 cd03227 ABC_Class2 ABC-type Cl 96.5 0.0096 2.1E-07 57.9 8.3 23 264-286 21-43 (162)
424 PHA02530 pseT polynucleotide k 96.5 0.0072 1.6E-07 64.4 8.1 39 264-303 2-40 (300)
425 PRK03731 aroL shikimate kinase 96.5 0.0025 5.4E-08 62.1 4.2 32 265-296 3-34 (171)
426 PRK05057 aroK shikimate kinase 96.5 0.0026 5.5E-08 62.7 4.3 34 264-297 4-37 (172)
427 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.014 3E-07 58.8 9.6 20 266-285 30-49 (200)
428 cd03115 SRP The signal recogni 96.5 0.014 2.9E-07 57.1 9.3 33 267-299 3-38 (173)
429 PHA02624 large T antigen; Prov 96.5 0.0043 9.4E-08 71.6 6.4 120 262-400 429-561 (647)
430 PRK14530 adenylate kinase; Pro 96.5 0.0025 5.3E-08 64.9 4.1 30 266-295 5-34 (215)
431 cd03247 ABCC_cytochrome_bd The 96.5 0.017 3.7E-07 56.8 9.9 104 264-382 28-160 (178)
432 PRK13851 type IV secretion sys 96.5 0.0027 5.8E-08 69.5 4.5 73 261-333 159-246 (344)
433 PF12780 AAA_8: P-loop contain 96.5 0.014 3E-07 61.8 9.8 91 231-333 8-99 (268)
434 TIGR00959 ffh signal recogniti 96.5 0.068 1.5E-06 60.2 15.8 74 262-335 97-194 (428)
435 TIGR03499 FlhF flagellar biosy 96.5 0.0081 1.8E-07 64.0 8.0 38 263-300 193-235 (282)
436 PF02562 PhoH: PhoH-like prote 96.5 0.0031 6.8E-08 64.0 4.6 23 266-288 21-43 (205)
437 COG2804 PulE Type II secretory 96.5 0.0064 1.4E-07 68.6 7.4 97 225-335 232-339 (500)
438 TIGR01526 nadR_NMN_Atrans nico 96.4 0.008 1.7E-07 65.3 8.0 70 265-335 163-243 (325)
439 TIGR02525 plasmid_TraJ plasmid 96.4 0.0054 1.2E-07 67.8 6.7 69 266-334 151-236 (372)
440 COG3842 PotA ABC-type spermidi 96.4 0.0037 8.1E-08 68.2 5.3 28 259-286 24-53 (352)
441 cd03230 ABC_DR_subfamily_A Thi 96.4 0.023 4.9E-07 55.7 10.4 102 266-381 28-157 (173)
442 PF08423 Rad51: Rad51; InterP 96.4 0.0052 1.1E-07 64.5 6.1 109 267-376 41-185 (256)
443 TIGR00064 ftsY signal recognit 96.4 0.063 1.4E-06 57.0 14.3 37 262-298 70-109 (272)
444 COG1120 FepC ABC-type cobalami 96.4 0.0072 1.6E-07 63.4 6.9 31 258-288 20-52 (258)
445 PF07931 CPT: Chloramphenicol 96.4 0.023 5E-07 56.3 10.2 38 266-303 3-40 (174)
446 COG1136 SalX ABC-type antimicr 96.4 0.019 4.2E-07 59.0 9.9 21 266-286 33-53 (226)
447 PHA02774 E1; Provisional 96.4 0.013 2.8E-07 67.6 9.4 33 265-297 435-468 (613)
448 COG2274 SunT ABC-type bacterio 96.4 0.008 1.7E-07 71.6 8.1 68 310-399 614-681 (709)
449 PRK14528 adenylate kinase; Pro 96.4 0.0032 7E-08 62.8 4.1 30 266-295 3-32 (186)
450 COG1127 Ttg2A ABC-type transpo 96.4 0.016 3.5E-07 59.8 9.0 34 254-287 22-57 (263)
451 PRK14527 adenylate kinase; Pro 96.4 0.0034 7.4E-08 62.6 4.1 33 263-295 5-37 (191)
452 PRK05541 adenylylsulfate kinas 96.4 0.01 2.2E-07 58.1 7.5 40 263-302 6-48 (176)
453 TIGR00767 rho transcription te 96.3 0.011 2.5E-07 65.4 8.5 22 267-288 171-192 (415)
454 PRK09302 circadian clock prote 96.3 0.025 5.3E-07 65.2 11.6 41 261-301 28-72 (509)
455 PRK04220 2-phosphoglycerate ki 96.3 0.14 3E-06 55.0 16.4 39 262-301 90-128 (301)
456 COG1102 Cmk Cytidylate kinase 96.3 0.003 6.5E-08 61.3 3.3 28 267-294 3-30 (179)
457 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.023 5E-07 57.6 10.0 104 265-384 30-156 (204)
458 PF08298 AAA_PrkA: PrkA AAA do 96.3 0.0092 2E-07 64.9 7.4 84 229-319 58-144 (358)
459 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0035 7.6E-08 61.6 3.9 34 266-301 5-38 (188)
460 PF05970 PIF1: PIF1-like helic 96.3 0.02 4.3E-07 63.2 10.2 38 263-300 21-61 (364)
461 TIGR01351 adk adenylate kinase 96.3 0.0034 7.4E-08 63.6 3.8 33 267-301 2-34 (210)
462 COG2074 2-phosphoglycerate kin 96.3 0.1 2.2E-06 54.4 14.2 186 262-475 87-285 (299)
463 PRK02496 adk adenylate kinase; 96.3 0.0034 7.4E-08 62.0 3.6 30 266-295 3-32 (184)
464 TIGR02533 type_II_gspE general 96.3 0.009 2E-07 68.4 7.5 95 226-334 217-322 (486)
465 cd03215 ABC_Carb_Monos_II This 96.3 0.023 5E-07 56.2 9.4 24 265-288 27-50 (182)
466 COG5271 MDN1 AAA ATPase contai 96.3 0.013 2.9E-07 72.9 8.9 135 266-415 890-1048(4600)
467 PF06414 Zeta_toxin: Zeta toxi 96.3 0.014 3E-07 58.7 7.9 67 262-328 13-98 (199)
468 PRK09302 circadian clock prote 96.3 0.016 3.6E-07 66.7 9.6 76 261-336 270-376 (509)
469 KOG3928 Mitochondrial ribosome 96.2 0.074 1.6E-06 58.7 13.6 49 395-444 405-457 (461)
470 PF09848 DUF2075: Uncharacteri 96.2 0.009 2E-07 65.5 6.9 23 266-288 3-25 (352)
471 PRK14730 coaE dephospho-CoA ki 96.2 0.017 3.7E-07 58.1 8.3 39 266-306 3-41 (195)
472 TIGR00152 dephospho-CoA kinase 96.2 0.022 4.7E-07 56.6 9.0 39 267-307 2-40 (188)
473 PRK08099 bifunctional DNA-bind 96.2 0.012 2.6E-07 65.8 7.7 38 264-301 219-256 (399)
474 PF13245 AAA_19: Part of AAA d 96.1 0.0072 1.6E-07 51.6 4.4 32 267-298 13-51 (76)
475 PF13238 AAA_18: AAA domain; P 96.1 0.0041 8.8E-08 56.8 3.1 22 267-288 1-22 (129)
476 PRK05703 flhF flagellar biosyn 96.1 0.041 8.9E-07 62.0 11.5 37 264-300 221-262 (424)
477 COG2805 PilT Tfp pilus assembl 96.1 0.028 6E-07 59.8 9.4 94 264-378 124-232 (353)
478 cd03214 ABC_Iron-Siderophores_ 96.1 0.026 5.7E-07 55.6 8.9 24 265-288 26-49 (180)
479 cd03213 ABCG_EPDR ABCG transpo 96.1 0.04 8.7E-07 55.1 10.3 25 264-288 35-59 (194)
480 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.032 7E-07 57.4 9.7 105 265-383 32-158 (222)
481 PRK01184 hypothetical protein; 96.1 0.005 1.1E-07 60.8 3.7 29 266-295 3-31 (184)
482 PRK14737 gmk guanylate kinase; 96.0 0.012 2.7E-07 58.8 6.3 25 264-288 4-28 (186)
483 PRK04182 cytidylate kinase; Pr 96.0 0.0057 1.2E-07 59.6 3.8 29 266-294 2-30 (180)
484 cd03229 ABC_Class3 This class 96.0 0.024 5.2E-07 55.8 8.2 104 266-382 28-164 (178)
485 TIGR03819 heli_sec_ATPase heli 96.0 0.0073 1.6E-07 66.0 4.9 69 265-333 179-263 (340)
486 TIGR01425 SRP54_euk signal rec 96.0 0.054 1.2E-06 60.9 11.8 72 263-334 99-193 (429)
487 TIGR01448 recD_rel helicase, p 96.0 0.017 3.8E-07 69.2 8.3 97 266-379 340-455 (720)
488 PRK00889 adenylylsulfate kinas 96.0 0.027 5.9E-07 55.1 8.3 39 264-302 4-45 (175)
489 PRK12337 2-phosphoglycerate ki 96.0 0.13 2.7E-06 58.3 14.5 73 395-474 386-458 (475)
490 PF13521 AAA_28: AAA domain; P 96.0 0.0069 1.5E-07 58.6 4.0 34 267-301 2-35 (163)
491 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.035 7.6E-07 54.2 8.7 28 267-294 5-35 (159)
492 TIGR02173 cyt_kin_arch cytidyl 95.9 0.0066 1.4E-07 58.7 3.8 29 267-295 3-31 (171)
493 COG4133 CcmA ABC-type transpor 95.9 0.035 7.6E-07 55.4 8.7 52 323-388 148-199 (209)
494 COG0467 RAD55 RecA-superfamily 95.9 0.031 6.6E-07 58.6 9.0 43 261-303 20-65 (260)
495 PRK12608 transcription termina 95.9 0.047 1E-06 60.2 10.7 22 267-288 136-157 (380)
496 PF10443 RNA12: RNA12 protein; 95.9 0.24 5.1E-06 55.4 16.1 47 369-417 185-232 (431)
497 cd03232 ABC_PDR_domain2 The pl 95.9 0.048 1E-06 54.4 9.9 23 265-287 34-56 (192)
498 COG1126 GlnQ ABC-type polar am 95.9 0.021 4.6E-07 58.1 7.2 27 260-286 22-50 (240)
499 COG1118 CysA ABC-type sulfate/ 95.9 0.024 5.3E-07 60.4 7.9 21 266-286 30-50 (345)
500 cd03284 ABC_MutS1 MutS1 homolo 95.9 0.031 6.7E-07 57.2 8.6 22 265-286 31-52 (216)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-112 Score=952.47 Aligned_cols=587 Identities=52% Similarity=0.815 Sum_probs=527.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEecccccCcceeEEEEEcC--
Q 005480 66 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLP-- 143 (694)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (694)
+|++++++++.+++.+.. .....++|++|+.++..++|++|.+..++.........+ ...++..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~ 68 (596)
T COG0465 2 LWLLIAIVLIFLFNLFTN-------SSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG------SKNTVYLPKG 68 (596)
T ss_pred chhHHHHHHHHHHHHhhh-------cccccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCC------cceEEeecCC
Confidence 476666666666666652 234679999999999999999999976553322222221 12233344
Q ss_pred CCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccc
Q 005480 144 GLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQME 223 (694)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 223 (694)
..++++...+..+++.+....+... ++|+.++..|++.+++++.++|++++...+ +++.+ .|+||+|+++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lp~il~~~~~~~~~~r~~~~---g~g~~-~~~~gkskak~~~~ 142 (596)
T COG0465 69 VNDPNLVSFLDSNNITESGFIPEDN--SLLASLLSTWLPFILLIGLGWFFFRRQAQG---GGGGG-AFSFGKSKAKLYLE 142 (596)
T ss_pred cccHHHHHHHHhcCCcccccCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCc-ccCCChHHHHHhcc
Confidence 3477899999999986655544333 567777777777777777665555543322 12222 89999999999988
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
....++|.|++|++++|+++.|+|++|++|.+|..+|+++|+|+||+||||||||+||||+|+++++||+++|+|+|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 304 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
|+|.+++++|++|.+|++++||||||||||+++++|+.+.++++++++|++||||.+||+|..+.+|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHH
Q 005480 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (694)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~d 463 (694)
+||+|||||||+|.++.||..+|++|++.|++++++++++|+..+|+.|+||+|+||+|++|+|++.|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcCCccc-ccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccCCCcCceEEeecCCCCCCCCHHHHHH
Q 005480 464 IDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFA 542 (694)
Q Consensus 464 i~~Ai~~v~~g~~~~~~-~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~ 542 (694)
|++|++++++|++++.. .++++++.+||||+|||+++.+++++++++|+||+|||+++||+++.|.+|+.++||+++++
T Consensus 383 i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~ 462 (596)
T COG0465 383 IEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLD 462 (596)
T ss_pred hHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHH
Confidence 99999999999999875 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHHhhhhccccCHHHHHH
Q 005480 543 RIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAED 621 (694)
Q Consensus 543 ~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~At~la~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 621 (694)
+|+++||||||||++||. ++||||+||+++||++|+.||++||||+ +||+.|...++ -|+++....+++|+++++.
T Consensus 463 ~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~ 539 (596)
T COG0465 463 RIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEG--VFLGRYQKAKNYSEETAQE 539 (596)
T ss_pred HHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhccc--ccccccccccCccHHHHHH
Confidence 999999999999999997 7999999999999999999999999998 99999988544 3885544677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005480 622 IDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 674 (694)
Q Consensus 622 id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 674 (694)
||.||++++++||++|+++|.+|++.++.+++.|+|+|||+++||.+|+....
T Consensus 540 ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 540 IDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999998754
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-108 Score=883.73 Aligned_cols=442 Identities=54% Similarity=0.822 Sum_probs=422.7
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~ 299 (694)
...+...+++|+||-|+|++|++|+|+|+||++|++|.++|.+.|+||||+||||||||+||||+|+|+++||++.++++
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
|-++|+|++++++|++|..|++.+||||||||||++|.+|... ...+..+++||||.+||||..+.+||||+|||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 9999999999999999999999999999999999999998652 2227899999999999999999999999999999
Q ss_pred cccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCccc
Q 005480 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (694)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~I 459 (694)
+.||+||.||||||++|.+|.||.++|.+||+.|+.++.++.++|+..||+.|+||+|+||+|++|.|++.|+..|...|
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCcCCccc-ccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccCCCcCceEEeecCCCCCCCCHH
Q 005480 460 SSKEIDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 538 (694)
Q Consensus 460 t~~di~~Ai~~v~~g~~~~~~-~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~ 538 (694)
++.+++.|.+++++|++++.+ ++++.++.+||||.|||||+..+.++.|++|+||+|||.++|++.++|+.|.+..||.
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~ 609 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKA 609 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHH
Confidence 999999999999999999864 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHHhhhhccccCHH
Q 005480 539 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEK 617 (694)
Q Consensus 539 ~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~At~la~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~s~~ 617 (694)
++++++.+|||||+|||++||.+.+|+||++||++||++|++||+.||||+ +||+.+..... ..+++..
T Consensus 610 q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~----------~~s~~~~ 679 (752)
T KOG0734|consen 610 QLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN----------SSSLSPR 679 (752)
T ss_pred HHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC----------CCCCCch
Confidence 999999999999999999999999999999999999999999999999998 99998866222 2457888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005480 618 LAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 674 (694)
Q Consensus 618 ~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 674 (694)
+...||.||+++|+++|+||+.||+.|...+++||++||++|||+++||++++.+..
T Consensus 680 t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~ 736 (752)
T KOG0734|consen 680 TQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKS 736 (752)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccc
Confidence 899999999999999999999999999999999999999999999999999998763
No 3
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.2e-102 Score=892.10 Aligned_cols=584 Identities=66% Similarity=1.037 Sum_probs=518.3
Q ss_pred CCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEecccccCcceeEEEEEcCCCcHHHHHHHHhcCcceeeccCCCcch
Q 005480 91 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSG 170 (694)
Q Consensus 91 ~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (694)
.+.++++||+|++++++|+|++|.+.+++....+....+..+....++++..|..++++++.|.+++|++...+....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 124 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLK-- 124 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCcc--
Confidence 456679999999999999999999987654332322222212234556777776678999999999999988765443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccCCCCCCccccccchHHHHHHHHHHHHh
Q 005480 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL 250 (694)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l 250 (694)
++|+..+.++++|++++++++|++.+.....++ .....++|++++.++.......++|+||+|++++|+++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~l 202 (638)
T CHL00176 125 SNIVTILSNLLLPLILIGVLWFFFQRSSNFKGG--PGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFL 202 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHH
Confidence 567777777777777776665554443221111 112467899999888877888899999999999999999999999
Q ss_pred cCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEc
Q 005480 251 KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (694)
Q Consensus 251 ~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfID 330 (694)
++++.|..+|.+.|+|+||+||||||||++|+++|+++++||+++++++|.+.+.|.+..+++++|+.|+..+|||||||
T Consensus 203 k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHH
Q 005480 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (694)
Q Consensus 331 EID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il 410 (694)
|||.++.+|+.+.++++++.++++++||.+||++..+.+++||++||+++.+|++++||||||++|.+++||.++|.+||
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 99999998887777778899999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhh
Q 005480 411 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVA 490 (694)
Q Consensus 411 ~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va 490 (694)
+.|+++..+..++++..+|..|+||+|+||+++|++|+..|.+++...|+.+||++|+++++.|.++....++++++++|
T Consensus 363 ~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA 442 (638)
T CHL00176 363 KVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIA 442 (638)
T ss_pred HHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999998887666778899999
Q ss_pred HHHHHHHHHHhhcCCCCCcceeeeccCCCcCceEEeecCCCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCcccCcchH
Q 005480 491 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 570 (694)
Q Consensus 491 ~hEaGhAvv~~~l~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~D 570 (694)
|||+||||+++++++.+++++|||+|||+++||+++.|.++..++||.+++++|+++|||||||+++||++++|+||+||
T Consensus 443 ~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~D 522 (638)
T CHL00176 443 YHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASND 522 (638)
T ss_pred HHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccCCCCchhhHH-hhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005480 571 LQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM-RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAID 649 (694)
Q Consensus 571 l~~At~la~~mv~~~Gm~~~g~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~ 649 (694)
|++||+||+.||++||||++||+.+...+....|++ .+...+.+|+++++.||.||++++++||++|+++|++||+.|+
T Consensus 523 l~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~ 602 (638)
T CHL00176 523 LQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLID 602 (638)
T ss_pred HHHHHHHHHHHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999876332113553 3445678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHhcccCCCC
Q 005480 650 KIVEVLLEKETMSGDEFRAILSEFVEIPA 678 (694)
Q Consensus 650 ~la~~Lle~etL~g~ei~~il~~~~~~~~ 678 (694)
+||++|+|+|||+|+||++|++++...|+
T Consensus 603 ~la~~Lle~Etl~~~ei~~il~~~~~~~~ 631 (638)
T CHL00176 603 LLVELLLQKETIDGDEFREIVNSYTILPP 631 (638)
T ss_pred HHHHHHHHhCccCHHHHHHHHhhcCCCCC
Confidence 99999999999999999999988765443
No 4
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-101 Score=873.58 Aligned_cols=576 Identities=55% Similarity=0.854 Sum_probs=487.7
Q ss_pred CccccHHHHH-HHHhcCCeeEEEEeeCCeEEEEEecccccCc--ceeEEEEEcCCCcHHHHHHHHh----cCcce-eecc
Q 005480 93 SSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGN--RVQRVRVQLPGLSQELLQKFRE----KNIDF-AAHN 164 (694)
Q Consensus 93 ~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~----~~~~~-~~~~ 164 (694)
..+++|.+|+ ++++.|.|.++.+...-....++........ ..+.+...+-. .+.+.+++.. -+++. ...+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~-v~~F~~kl~~a~~~l~~~~~~~~p 241 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS-VDNFERKLDEAQRNLGIDTVVRVP 241 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecc-cchHHHHHHHHHHHhCCCceeEee
Confidence 4589999997 7999999999888642222122221111100 01222222211 2333333322 23221 1111
Q ss_pred CCCcchhhHHHHHHHHHHH-HHHHHHHHHHHhhcCC-CCCCCCCCCCccccccccc--cccccCCCCCCccccccchHHH
Q 005480 165 AQEDSGSLLFNLIGNLAFP-LILIGGLFLLSRRSSG-GMGGPGGPGFPLAFGQSKA--KFQMEPNTGVTFDDVAGVDEAK 240 (694)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~f~dv~G~~e~k 240 (694)
........+...+. .++| ++.++.++++.|++.+ +.+++|+..+++.|+.++. ++..+..++++|.||+|++++|
T Consensus 242 V~~~~~~~~~~~~~-~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 242 VTYISESLLDLILG-LLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eEEeecchhhhhhh-hhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHH
Confidence 11110122233333 3445 7778888888887764 1233444445566776666 7777888889999999999999
Q ss_pred HHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHH
Q 005480 241 QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK 320 (694)
Q Consensus 241 ~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~ 320 (694)
++|.|+|.+|++|+.|+++|+++|||+||+||||||||+||||+|+|+++||+.+++++|+++++|.+++++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccccc-CCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeecc
Q 005480 321 ENAPCIVFVDEIDAVGRQR-GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (694)
Q Consensus 321 ~~aP~ILfIDEID~l~~~r-~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~ 399 (694)
.++||||||||||+++++| +.+.+++++++++++||||.+||||....+|+|+|+||+++.||+||+|||||||+|.++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 9999999999999999999 445668899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHcCcCCc
Q 005480 400 VPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT 478 (694)
Q Consensus 400 ~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~ 478 (694)
+||..+|.+|++.|+++.+++ +++++..+|..|+||+|+||.|+||+|+..|.|++...|+..|+++|+++++.|.+.+
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcccccc
Confidence 999999999999999999985 7888999999999999999999999999999999999999999999999999998876
Q ss_pred c-cccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccCCCcCceEEeecCCCCCCCCHHHHHHHHHHhhhhHHHHHhh
Q 005480 479 V-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVI 557 (694)
Q Consensus 479 ~-~~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~ 557 (694)
. ..+.++++.+||||+|||+++|++++.+|+.+|+|+| |+++||+++.|.++ +++|+++|+++|+++||||||||++
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~ 638 (774)
T KOG0731|consen 561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVV 638 (774)
T ss_pred chhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHHHHHHHHHHhCcchhhhee
Confidence 4 5578889999999999999999999999999999999 67999999999877 8999999999999999999999999
Q ss_pred cCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHHhhhhccccCHHHHHHHHHHHHHHHHHHHHH
Q 005480 558 FGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEI 636 (694)
Q Consensus 558 fg~~~~t~Ga~~Dl~~At~la~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~ 636 (694)
|| +++||||.+||++||++|+.||++|||++ +|++++.... .+.+...+++|+.+++.||.||++|+..||++
T Consensus 639 fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~-----~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~ 712 (774)
T KOG0731|consen 639 FG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLL-----PGDESFRKPYSEKTAQLIDTEVRRLVQKAYER 712 (774)
T ss_pred cC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcc-----cccccccCccchhHHHHHHHHHHHHHhhHHHH
Confidence 99 68999999999999999999999999998 9999984311 12234468999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q 005480 637 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPA 678 (694)
Q Consensus 637 A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~~ 678 (694)
|.++|++|++.++.||+.||++|+|+++|+.++++.++..+.
T Consensus 713 ~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 713 TKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 999999999999999999999999999999999998876664
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.1e-93 Score=829.72 Aligned_cols=595 Identities=47% Similarity=0.753 Sum_probs=517.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEecccccCcceeEEEEE
Q 005480 62 RGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 141 (694)
Q Consensus 62 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (694)
++++.|++++++++.++..+... ......++|+.|.+.+.++.+.++.+..+ .+ +....+ ...+...
T Consensus 3 ~~~L~~i~l~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~-tI---K~~~~e----~~~~~~~ 69 (644)
T PRK10733 3 KNLILWLVIAVVLMSVFQSFGPS-----ESNGRKVDYSTFLQEVNQDQVREARINGR-EI---NVTKKD----SNRYTTY 69 (644)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC-----CCCcccCCHHHHHHHHHcCCeEEEEEeCC-EE---EEEEcC----CceEEEe
Confidence 46777877776666555444332 12345799999999999999999988532 22 111211 1234444
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccc
Q 005480 142 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 221 (694)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 221 (694)
.|..++.++..+.++++.+........ +++..++..+.+.++++++++++.++++.+ +....+.|+++...+.
T Consensus 70 ~~~~~~~l~~~l~~~~v~~~~~~~~~~--~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-----~~~~l~af~~~~~~~~ 142 (644)
T PRK10733 70 IPVNDPKLLDNLLTKNVKVVGEPPEEP--SLLASIFISWFPMLLLIGVWIFFMRQMQGG-----GGKGAMSFGKSKARML 142 (644)
T ss_pred CCCCCHHHHHHHHHcCCeEEecCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCceeEEecccccccc
Confidence 565567889999999999877654432 455555555555666667777776665532 2234678888888887
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
.+.....+|+|+.|.+.+++++.+++++++++..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 77677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
+.+.+.+...++++|+.++..+||||||||||+++.+|+.+.++++++..+++++||.+||++..+.+++||+|||+|+.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 99999999999999999999999999999999999999887777888899999999999999999999999999999999
Q ss_pred cchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCH
Q 005480 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (694)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~ 461 (694)
||++++||||||++|.+++||.++|.+||+.|+++.++..++++..++..|.||||+||.++|++|+..|.++++..|+.
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~ 382 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 382 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcCCcc-cccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccCCCcCceEEeecCCCCCCCCHHHH
Q 005480 462 KEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQL 540 (694)
Q Consensus 462 ~di~~Ai~~v~~g~~~~~-~~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l 540 (694)
.|+++|++++..+.+++. ..++++++.+||||+||||++++++..+++++|+|+|||.++||+++.|.++....||.+|
T Consensus 383 ~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l 462 (644)
T PRK10733 383 VEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKL 462 (644)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHH
Confidence 999999999999887654 3466789999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHhhhhHHHHHhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHH-hhhhccccCHHH
Q 005480 541 FARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNSMSEKL 618 (694)
Q Consensus 541 ~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~At~la~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~-~~~~~~~~s~~~ 618 (694)
+++|+++|||||||+++||++++|+||+|||++||+||+.||++||||+ +||+.|...+.. .|++ .+...+.+|+++
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~-~~lg~~~~~~~~~s~~~ 541 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGE-VFLGRSVAKAKHMSDET 541 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccc-cccccccccccccCHHH
Confidence 9999999999999999999888999999999999999999999999998 999998652221 2553 344567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCC
Q 005480 619 AEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 677 (694)
Q Consensus 619 ~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~ 677 (694)
++.||+||++++++||++|++||++||+.|++||++|+|+|||+++||++|+.++...|
T Consensus 542 ~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~~~ 600 (644)
T PRK10733 542 ARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDVRP 600 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999998764333
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.8e-84 Score=729.69 Aligned_cols=490 Identities=60% Similarity=0.955 Sum_probs=443.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcCCCCCCCCCCCCccccccccccccccCCCCCCccccccchHHHHHHHHHHHHhc
Q 005480 173 LFNLIGNLAFPLILIG-GLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 251 (694)
Q Consensus 173 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~ 251 (694)
|.+++.++.+|+++++ +|+++.++..++ | +..+.+++++.++..++.+.++|+||+|++++|+++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~ 75 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----G--GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLK 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----C--CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 4555666666555554 444455555432 1 34567889999999888999999999999999999999999999
Q ss_pred CchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEcc
Q 005480 252 KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (694)
Q Consensus 252 ~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 331 (694)
+++.|...|.++|+|+||+||||||||++|+++|+++++||+.++++++.+.+.|.+.+.++.+|+.|+..+||||||||
T Consensus 76 ~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 76 NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHH
Q 005480 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (694)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~ 411 (694)
||.++.+++.+.++.+++..+++++||.+||++..+.+++||+|||+|+.||++++||||||+.|++++||.++|.+||+
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 99999888776566677888999999999999998899999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHcCcCCcc-cccCCcchhhh
Q 005480 412 VHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVA 490 (694)
Q Consensus 412 ~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~~-~~~~~~~~~va 490 (694)
.++++.++..++++..++..+.|||++||+++|++|+..|.++++..|+.+|+++|++++..+..... ..++++++.+|
T Consensus 236 ~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A 315 (495)
T TIGR01241 236 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVA 315 (495)
T ss_pred HHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 99998888888899999999999999999999999999999999999999999999999999876653 34667889999
Q ss_pred HHHHHHHHHHhhcCCCCCcceeeeccCCCcCceEEeecCCCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCcccCcchH
Q 005480 491 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 570 (694)
Q Consensus 491 ~hEaGhAvv~~~l~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~D 570 (694)
|||+||||++++++..+++++++|.|||.++||+++.|.++....|+.+++++|+++|||||||+++||+ +|+|+++|
T Consensus 316 ~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~~D 393 (495)
T TIGR01241 316 YHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGE--VTTGASND 393 (495)
T ss_pred HHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcC--CCCCchHH
Confidence 9999999999999988999999999999999999999988788999999999999999999999999994 89999999
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHH-hhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005480 571 LQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAI 648 (694)
Q Consensus 571 l~~At~la~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l 648 (694)
|++||++|+.||.+|||++ +|++.+..... ..+++ .+...+++|+.++..||.+|++++++||++|+++|++||++|
T Consensus 394 l~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~-~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l 472 (495)
T TIGR01241 394 IKQATNIARAMVTEWGMSDKLGPVAYGSDGG-DVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDEL 472 (495)
T ss_pred HHHHHHHHHHHHHHhCCCcccCceeeccCcc-ccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999998 99998865221 12332 223456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCHHHHHHHHh
Q 005480 649 DKIVEVLLEKETMSGDEFRAILS 671 (694)
Q Consensus 649 ~~la~~Lle~etL~g~ei~~il~ 671 (694)
++||++|+++|+|+++||++|++
T Consensus 473 ~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 473 ELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHcCeeCHHHHHHHhC
Confidence 99999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-63 Score=515.88 Aligned_cols=260 Identities=45% Similarity=0.768 Sum_probs=252.8
Q ss_pred ccccccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
..+..+..|++||+||+|+++++++++|.|+. |++|+.|.++|+++|+|||||||||||||+||||+|++.++.|+.+.
T Consensus 138 ~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 138 SVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred heeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec
Confidence 34566788999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 297 ~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
+|+|+.+|+|++++.+|++|+.|+.++||||||||||+++.+|.....+++.+.++++.+||.+||||.+..+|-||+||
T Consensus 218 gSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~AT 297 (406)
T COG1222 218 GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMAT 297 (406)
T ss_pred cHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred CCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005480 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (694)
Q Consensus 377 N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~ 456 (694)
|+++.|||||+|||||||.|+||+||.++|.+||+.|.+++.+.+++|++.+|+.|+|+|||||.++|.+|.++|.|+.+
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHcCcCC
Q 005480 457 AAISSKEIDDSIDRIVAGMEG 477 (694)
Q Consensus 457 ~~It~~di~~Ai~~v~~g~~~ 477 (694)
..||++||.+|++++......
T Consensus 378 ~~Vt~~DF~~Av~KV~~~~~~ 398 (406)
T COG1222 378 DEVTMEDFLKAVEKVVKKKKK 398 (406)
T ss_pred CeecHHHHHHHHHHHHhcccc
Confidence 999999999999999876543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8.8e-56 Score=530.62 Aligned_cols=307 Identities=19% Similarity=0.314 Sum_probs=265.4
Q ss_pred hhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH-------------------------------
Q 005480 256 FTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF------------------------------- 304 (694)
Q Consensus 256 ~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~------------------------------- 304 (694)
+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4678999999999999999999999999999999999999999998643
Q ss_pred ------------hhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc---CCCC
Q 005480 305 ------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNTG 369 (694)
Q Consensus 305 ------------~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---~~~~ 369 (694)
.++...+++.+|+.|++++||||||||||+++.+ +....++++|+.+||+.. ...+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCCC
Confidence 1223445899999999999999999999999754 223346899999999864 4568
Q ss_pred eEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHh--hcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHH
Q 005480 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH--GSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNE 446 (694)
Q Consensus 370 ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~--l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~e 446 (694)
|+||||||+|+.|||||+||||||++|.|+.|+..+|++++..+ .++..+..+ +|++.+|..|+|||||||+++|||
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864 445555543 679999999999999999999999
Q ss_pred HHHHHHHhCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccC------CCc
Q 005480 447 AAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR------GQA 520 (694)
Q Consensus 447 Aa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~pr------g~~ 520 (694)
|+..|+++++..|+.++|+.|++|+++|.+.... ...++ .+++||+||||++.+++..+|+++|||+++ +.+
T Consensus 1853 AaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~-~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~ 1930 (2281)
T CHL00206 1853 ALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR-SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDS 1930 (2281)
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc-Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCccc
Confidence 9999999999999999999999999999876543 22333 479999999999999999999999999632 456
Q ss_pred CceEEeecCCCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC
Q 005480 521 RGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE 589 (694)
Q Consensus 521 ~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~At~la~~mv~~~Gm~~ 589 (694)
.||+|++|.+ +.++|.+++.+|++||||||||++||+... .|+.||+.|||+|
T Consensus 1931 yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vE 1983 (2281)
T CHL00206 1931 YLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVE 1983 (2281)
T ss_pred ceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchh
Confidence 7999999865 799999999999999999999999997532 4677777777764
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-50 Score=448.60 Aligned_cols=249 Identities=45% Similarity=0.774 Sum_probs=237.0
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
.+.++++|+||+|+++.|.+|++.|.+ +++|+.|.++|..+|+|||||||||||||++|||+|++++.+|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 467899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
++|+|++++.++++|++|++.+|||||+||||+++..|+... +....+++++||++|||+....+|+||||||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 999999999999999999999999999999999999997322 25678899999999999999999999999999999
Q ss_pred cchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC--ccc
Q 005480 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK--AAI 459 (694)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~--~~I 459 (694)
||+|++||||||+.|+|++||.+.|.+||+.+++++++.+++|++.||..|+|||||||.++|++|+..|.++.- ..|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854 589
Q ss_pred CHHHHHHHHHHHHcC
Q 005480 460 SSKEIDDSIDRIVAG 474 (694)
Q Consensus 460 t~~di~~Ai~~v~~g 474 (694)
+.+||++|+..+...
T Consensus 663 ~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPS 677 (693)
T ss_pred cHHHHHHHHHhhccc
Confidence 999999999875443
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-50 Score=401.77 Aligned_cols=323 Identities=34% Similarity=0.576 Sum_probs=292.1
Q ss_pred CCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccc
Q 005480 143 PGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQM 222 (694)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 222 (694)
|-.-..+++....+.-.+..... .++++.+|+.+...++.....+.++++++.... -.|.....|-..+..
T Consensus 76 plvigqfle~vdqnt~ivgsttg----sny~vrilstidrellkps~svalhrhsnalvd-----vlppeadssi~ml~~ 146 (408)
T KOG0727|consen 76 PLVIGQFLEAVDQNTAIVGSTTG----SNYYVRILSTIDRELLKPSASVALHRHSNALVD-----VLPPEADSSISMLGP 146 (408)
T ss_pred chHHHHHHHhhhccCceeecccC----CceEEeehhhhhHHHcCCccchhhhhcccceee-----ccCCcccccccccCC
Confidence 43345666776665544443322 278999999999999999999999998875422 233344555555666
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
..+|++++.||+|++-.|++++|.++. +.+.+.|++.|+.+|+|||||||||||||+||+|+|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 788999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
.+|.|++.+.+|++|+.|+.++|+||||||||++..+|.....+.+.+.++++.+||++||||....+|-||.+||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCH
Q 005480 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (694)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~ 461 (694)
|||||+||||+||.|+||+||..+++-+|.....++.+.+++|++.+..+.+..||+||..+|++|.+.|.|.++-.|..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~ 386 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQ 386 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 005480 462 KEIDDSIDRIVAG 474 (694)
Q Consensus 462 ~di~~Ai~~v~~g 474 (694)
.||++|...++..
T Consensus 387 kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 387 KDFEKAYKTVVKK 399 (408)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999876544
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-49 Score=404.01 Aligned_cols=320 Identities=33% Similarity=0.577 Sum_probs=284.8
Q ss_pred HHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccCCC
Q 005480 147 QELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNT 226 (694)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 226 (694)
..+.+.+.++...|.....+ .|++++++.+..-++-+++.+++..+.....|-..+...||. .-+..++.|
T Consensus 110 g~leEiidd~haivst~~g~----e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv-----~vmK~eKaP 180 (440)
T KOG0726|consen 110 GTLEEIIDDNHAIVSTSVGS----EYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMV-----SVMKVEKAP 180 (440)
T ss_pred ccHHHHhcCCceEEecccCc----hheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccc-----eeeecccCc
Confidence 34445555554444332221 578899988888999999988887765544332222223332 223456778
Q ss_pred CCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHh
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~ 305 (694)
.-+|.|+.|++.++++++|.++. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.+|.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 88999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchh
Q 005480 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA 385 (694)
Q Consensus 306 G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 385 (694)
|.+.+.+|++|+.|..++|+|+||||||++|.+|-...+++..+.++++.+||+++|||.++..|-||.|||+.+.||||
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPa 340 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA 340 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHh
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred hcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 005480 386 LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (694)
Q Consensus 386 LlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~ 465 (694)
|+||||+||.|+|+.||...++.||..|..++.+..+++++.+....+.+||+||..+|.+|.++|.|..+..++++||.
T Consensus 341 LiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ 420 (440)
T KOG0726|consen 341 LIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFK 420 (440)
T ss_pred hcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCc
Q 005480 466 DSIDRIVAGM 475 (694)
Q Consensus 466 ~Ai~~v~~g~ 475 (694)
.|.++++...
T Consensus 421 ka~e~V~~~K 430 (440)
T KOG0726|consen 421 KAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-48 Score=421.29 Aligned_cols=247 Identities=44% Similarity=0.742 Sum_probs=230.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
-|+++|+||+|+++++.+|...+.+ +++|+.|+.+|+..|.|||||||||||||+||||+|+|++.+|+.+.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4789999999999999999997777 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 304 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
|+|++++.+|.+|..|+..+|||||+||||+|.++|+.+. .....+++||||++|||...+.+|.||||||+||.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 9999999999999999999999999999999999998743 5567789999999999999999999999999999999
Q ss_pred hhhcCCCccceeeeccCCCHHHHHHHHHHhhc--CCCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHhC----
Q 005480 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRRG---- 455 (694)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~--~~~l~~dvdl~~lA~~t~--G~sgadL~~lv~eAa~~A~~~~---- 455 (694)
||++||||||+.+++++|+.++|.+||+.+.+ +.++..|+|++.||+.+. |||||||..||++|...|.++.
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 778899999999999877 9999999999999999998751
Q ss_pred ---C---------cccCHHHHHHHHHHHHcC
Q 005480 456 ---K---------AAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 456 ---~---------~~It~~di~~Ai~~v~~g 474 (694)
. ..++..||++|+.++.+.
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 1 136677999999887544
No 13
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-47 Score=385.27 Aligned_cols=268 Identities=41% Similarity=0.705 Sum_probs=256.5
Q ss_pred cccccccccccccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 005480 211 LAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 289 (694)
Q Consensus 211 ~~~~~s~~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~ 289 (694)
.....|...+..+.+|++|+.||.|+.+.++.++|+++. +-+|++|..+|+.+|+|||||||||||||++|||+|++.+
T Consensus 157 pkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 157 PKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred CCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 345566677788899999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCC
Q 005480 290 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (694)
Q Consensus 290 ~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ 369 (694)
..|+.+-+|+++.+|+|++++.+|++|+.|+....||||+||||++++.|.....+++.+.+++..+|+.++|||..+.+
T Consensus 237 acfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgn 316 (435)
T KOG0729|consen 237 ACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGN 316 (435)
T ss_pred ceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999877667888999999999999999999999
Q ss_pred eEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005480 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAI 449 (694)
Q Consensus 370 ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~ 449 (694)
+-|+.+||+|+.|||||+||||+||.++|.+||.++|..||+.|.+.+....++-++.+|+.++..+|++|+.+|.+|.+
T Consensus 317 ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagm 396 (435)
T KOG0729|consen 317 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 396 (435)
T ss_pred eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccCHHHHHHHHHHHHcCcCCc
Q 005480 450 LAGRRGKAAISSKEIDDSIDRIVAGMEGT 478 (694)
Q Consensus 450 ~A~~~~~~~It~~di~~Ai~~v~~g~~~~ 478 (694)
.|++..+...|..||.+|+++++.|..+-
T Consensus 397 fairarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 397 FAIRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887654
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-47 Score=379.39 Aligned_cols=256 Identities=38% Similarity=0.689 Sum_probs=245.9
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeeh
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~ 297 (694)
.+.....|.-+++||+|++.++++|.+.+-. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+.+
T Consensus 159 aMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg 238 (424)
T KOG0652|consen 159 AMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG 238 (424)
T ss_pred eeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc
Confidence 3445667888999999999999999997766 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 298 s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
..++.+|.|.+++.+|+.|..|+..+|+||||||+|++|.+|..+...++.+.+++..+||+++|||.++..|-||++||
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCc
Q 005480 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (694)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~ 457 (694)
+.+.|||||+|+||+||.|+||.|+.+.|.+|++.|.+++...+|++++.+|+.|++|+|++...+|-+|.+.|.|++..
T Consensus 319 RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at 398 (424)
T KOG0652|consen 319 RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT 398 (424)
T ss_pred cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHcC
Q 005480 458 AISSKEIDDSIDRIVAG 474 (694)
Q Consensus 458 ~It~~di~~Ai~~v~~g 474 (694)
.|+.+||.+++-.+...
T Consensus 399 ev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 399 EVTHEDFMEGILEVQAK 415 (424)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999877543
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=374.69 Aligned_cols=257 Identities=40% Similarity=0.711 Sum_probs=248.2
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~ 300 (694)
.++-|+-+++-|+|.+.++++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+|+|+...+.|+.+|++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 4566778999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
+.+|.|++.+.+|++|-.|+.++|+|||.||||.+|..|..+.++++.+.+++..+||+++|||+...++-||.|||+.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccC
Q 005480 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (694)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It 460 (694)
.|||||+||||+||.|+||+|+.+.|.+||+.|.+++++...+++..+|...+|.||+++..+|.+|.++|.|+.+-.+|
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvt 377 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVT 377 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCCc
Q 005480 461 SKEIDDSIDRIVAGMEGT 478 (694)
Q Consensus 461 ~~di~~Ai~~v~~g~~~~ 478 (694)
++||+-|+.+++......
T Consensus 378 qedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 378 QEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 999999999998765433
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=403.33 Aligned_cols=228 Identities=46% Similarity=0.778 Sum_probs=217.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
+.++++|.||+|++....+|.+++..+++|+.|..+|..+|+|||||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCC----CCeEEEEecCCc
Q 005480 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN----TGIIVIAATNRA 379 (694)
Q Consensus 304 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~----~~ViVIaaTN~p 379 (694)
+.|++++++|++|++|+..+|||+||||||+++++|.. ++.+-.++++.|||+.||++... .+|+||||||+|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999975 23455678999999999998654 579999999999
Q ss_pred cccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005480 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (694)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~ 454 (694)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||+.|+||.||||..||.+|+..|.+|
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=381.56 Aligned_cols=254 Identities=41% Similarity=0.688 Sum_probs=239.7
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~ 300 (694)
.+..|+++|+||+|++.+|+++++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 4557889999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
...|.|.+...++++|..|+..+||||||||||.++.+|.....+.+.+.++.+.+++.++|++....+++||+|||+++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 99999999999999999999999999999999999988865444555677889999999999998888999999999999
Q ss_pred ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccC
Q 005480 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (694)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It 460 (694)
.+||+++||||||+.|++++|+.++|.+||+.++.+..+..++++..++..|+||||+||.++|++|...|.++++..|+
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~ 375 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVIL 375 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCc
Q 005480 461 SKEIDDSIDRIVAGM 475 (694)
Q Consensus 461 ~~di~~Ai~~v~~g~ 475 (694)
.+||.+|+.+++.+.
T Consensus 376 ~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 376 PKDFEKGYKTVVRKT 390 (398)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.5e-43 Score=351.71 Aligned_cols=241 Identities=38% Similarity=0.669 Sum_probs=225.1
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
+..++++|+||+|++++|+..+-++++|.+|++|.++ .|++||+|||||||||++|+|+|+++++||+.+...+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 4557899999999999999999999999999998776 4899999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 303 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
.++|.++++++++|+.|++.+|||+||||+|+++-.|....-.+ ....++|.||++|||+..+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999987664432111 2456899999999999999999999999999999
Q ss_pred chhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHhCCcccCH
Q 005480 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA-NLLNEAAILAGRRGKAAISS 461 (694)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~-~lv~eAa~~A~~~~~~~It~ 461 (694)
|+++++ ||...|+|.+|+.++|.+|++.+++..++.-+.+++.+++.|.|+||+||. .++..|...|...+++.|+.
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ 345 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVER 345 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhH
Confidence 999999 999999999999999999999999999999999999999999999999986 68899999999999999999
Q ss_pred HHHHHHHHH
Q 005480 462 KEIDDSIDR 470 (694)
Q Consensus 462 ~di~~Ai~~ 470 (694)
+||+.|+.+
T Consensus 346 edie~al~k 354 (368)
T COG1223 346 EDIEKALKK 354 (368)
T ss_pred HHHHHHHHh
Confidence 999999987
No 19
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=2e-43 Score=358.16 Aligned_cols=210 Identities=41% Similarity=0.638 Sum_probs=179.0
Q ss_pred CHHHHHHHHHHHHcCcCCc-ccccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccCCCcCceEEeecCCCCCCCCHH
Q 005480 460 SSKEIDDSIDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 538 (694)
Q Consensus 460 t~~di~~Ai~~v~~g~~~~-~~~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~ 538 (694)
|++||++|+++++.|.+++ ...++++++++|+||+||||++++++..+++.++||+|||.++||+.+.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 6899999999999999885 456788899999999999999999999899999999999999999999998888789999
Q ss_pred HHHHHHHHhhhhHHHHHhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhH-HhhhhccccCH
Q 005480 539 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVI-MRMMARNSMSE 616 (694)
Q Consensus 539 ~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~At~la~~mv~~~Gm~~-~g~~~~~~~~~~~~~~-~~~~~~~~~s~ 616 (694)
+++++|+++|||||||+++||.+++|+|+++||++||+||+.||.+||||+ +|++.+........|+ ..+....++|+
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999888999999999999999999999999998 9999876622211133 22334568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 005480 617 KLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 669 (694)
Q Consensus 617 ~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~i 669 (694)
.+...+|++|+++|++||++|++||++||+.|++||++|+++++|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999986
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-42 Score=385.83 Aligned_cols=251 Identities=39% Similarity=0.699 Sum_probs=227.0
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~ 300 (694)
.++-|+++|+||+|.+++|.++++.++. |++|+.|. .|.+...|||||||||||||++|||+|.++...|+++.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3456899999999999999999999998 99998765 477777899999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc--CCCCeEEEEecCC
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNR 378 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--~~~~ViVIaaTN~ 378 (694)
.+||+|++++++|++|+.|+..+|||||+||+|.++++|+....+| .-..+++.|||.+||++. +..+|+||||||+
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999998754333 346789999999999997 5678999999999
Q ss_pred ccccchhhcCCCccceeeeccCCC-HHHHHHHHHHhhcCCCCCccccHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhC-
Q 005480 379 ADILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSNKKFDADVSLDVIAMRTP-GFSGADLANLLNEAAILAGRRG- 455 (694)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd-~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~-G~sgadL~~lv~eAa~~A~~~~- 455 (694)
||.|||+|+||||||+.+++.+++ .+.+..+|+...++..++.++|+..+|+.++ .|||||+-.+|-.|.+.|++|.
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i 900 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998885 5568899999999999999999999999985 6999999999999999998762
Q ss_pred ----------------CcccCHHHHHHHHHHHHcC
Q 005480 456 ----------------KAAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 456 ----------------~~~It~~di~~Ai~~v~~g 474 (694)
.-.|+++||.++.++..+.
T Consensus 901 ~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 901 HDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 1257889999999886544
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-42 Score=362.71 Aligned_cols=247 Identities=37% Similarity=0.633 Sum_probs=224.7
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
...+++.|+||+|+.++|+-|+|.|-. +..|+.|+.+ .++.+|||++||||||||+||||+|.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 356789999999999999999998877 8899877743 46779999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCC-CC---eEEEEecC
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TG---IIVIAATN 377 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~-~~---ViVIaaTN 377 (694)
++|.|++++.+|-+|+.|+.++|++|||||||+|+.+|+.. +.++...++-++||.+|||.... .+ |+|+|+||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 99999999999999999999999999999999999999763 56777889999999999998653 23 89999999
Q ss_pred CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC-
Q 005480 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK- 456 (694)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~- 456 (694)
.|+.||.|++| ||...|+||+||.++|..+++..++....+++++++.|+..++||||+||.++|++|.+.+.|+-.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred ----------------cccCHHHHHHHHHHHHcC
Q 005480 457 ----------------AAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 457 ----------------~~It~~di~~Ai~~v~~g 474 (694)
..|++.||++|+.++.+.
T Consensus 439 g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 439 GLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred cCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 347788888888776443
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.1e-41 Score=371.14 Aligned_cols=258 Identities=46% Similarity=0.754 Sum_probs=241.9
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~ 299 (694)
.....+.++|+||+|++++++++.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34566789999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
+...|.|.+...++.+|+.|+..+||||||||||.++.++.....++..+.++++.+++.+++++....+++||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998887655555667788999999999999888899999999999
Q ss_pred cccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCccc
Q 005480 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (694)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~I 459 (694)
+.+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..++..|.||+|+||+++|++|+..|.+++...|
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i 360 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEV 360 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCcCCc
Q 005480 460 SSKEIDDSIDRIVAGMEGT 478 (694)
Q Consensus 460 t~~di~~Ai~~v~~g~~~~ 478 (694)
+.+||.+|++++.......
T Consensus 361 ~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 361 TMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHhcccccc
Confidence 9999999999987765544
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=371.47 Aligned_cols=254 Identities=39% Similarity=0.705 Sum_probs=240.1
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~ 299 (694)
..++.|.++|+||+|++++++++.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 34567789999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
+...|.|.+...++.+|+.|+.++||||||||||.++.+|.....++..+.++++.++|.++|++....++.||+|||++
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 99999999999999999999999999999999999998887655566677788999999999999888899999999999
Q ss_pred cccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCccc
Q 005480 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (694)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~I 459 (694)
+.+|++++||||||+.|+|++||.++|.+||+.++.+..+..++++..++..++||||+||.++|++|+..|.++++..|
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~V 412 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKV 412 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 005480 460 SSKEIDDSIDRIVAG 474 (694)
Q Consensus 460 t~~di~~Ai~~v~~g 474 (694)
+.+||.+|+++++..
T Consensus 413 t~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 413 TQADFRKAKEKVLYR 427 (438)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998654
No 24
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=340.23 Aligned_cols=251 Identities=39% Similarity=0.673 Sum_probs=240.4
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~ 300 (694)
.+....++|+++.|.-++..++++.++. +.+|+.|..+|+++|+|++||||||||||++|+++|...++.|+.++.+++
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 3455678999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
.+.|.|++++.+|+.|+.|+.+.|||||+||||++++.+.+.....+.+.+.+|-.|+++||+|.....|-+|.|||+|+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 99999999999999999999999999999999999999977667778899999999999999999999999999999999
Q ss_pred ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccC
Q 005480 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (694)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It 460 (694)
.|||+|+||||+|+.+++|+|+...|..|++.|........++|.+.+.+..+||+|+|+++.|+||-..|.+..+..+-
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHh
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005480 461 SKEIDDSIDRIV 472 (694)
Q Consensus 461 ~~di~~Ai~~v~ 472 (694)
++|+..++.++.
T Consensus 363 ~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 363 HEDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-39 Score=358.05 Aligned_cols=228 Identities=44% Similarity=0.755 Sum_probs=217.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
+.+++.|+||+|+.++|+.+++++++ -+.|..|.....+.+.|||||||||||||+||.++|..++..|+.+.+.++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 44569999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 303 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
+|.|.++..+|++|..|+..+|||||+||+|.++++|+....|. ..+++||||++|||.+.-.+|.|+|||.+|+.+
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 99999999999999999999999999999999999998654443 467999999999999999999999999999999
Q ss_pred chhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005480 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (694)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~ 454 (694)
||||+||||+|+.++.+.|+..+|.+|++.......++.++|++.+|..|+|||||||..++..|.+.|..+
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988764
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-39 Score=364.00 Aligned_cols=245 Identities=48% Similarity=0.787 Sum_probs=230.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
..+.++|+|++|.+++|+++++.+.+ ++.++.|...+.++|+|+|||||||||||+||+|+|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45789999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 303 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
+|+|++++.++.+|..|++.+||||||||+|++...|+.... ....++++++|.+|++.+...+|+||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 999999999999999999999999999999999998875322 22368999999999999999999999999999999
Q ss_pred chhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-Cccc
Q 005480 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-KAAI 459 (694)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~-~~~I 459 (694)
|++++||||||+.+++++||..+|.+||+.|+.... +..++++..++..|+||+|+||..+|++|+..+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998544 4678999999999999999999999999999999998 7889
Q ss_pred CHHHHHHHHHHH
Q 005480 460 SSKEIDDSIDRI 471 (694)
Q Consensus 460 t~~di~~Ai~~v 471 (694)
+++||.+|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999873
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.7e-38 Score=346.78 Aligned_cols=252 Identities=47% Similarity=0.780 Sum_probs=235.8
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s 298 (694)
+.....+.++|+||+|++++++++.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 344567889999999999999999999876 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 299 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
++...+.|.+...++.+|+.++...||||||||+|.++.++.....++..+.+..+.+++.+++++....++.||+|||+
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998877655555566778889999999999887789999999999
Q ss_pred ccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcc
Q 005480 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (694)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~ 458 (694)
++.+|++++||||||+.|+++.|+.++|.+||+.++.+..+..++++..++..+.||+|+||.++|++|+..|.++++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 005480 459 ISSKEIDDSIDRI 471 (694)
Q Consensus 459 It~~di~~Ai~~v 471 (694)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999876
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-38 Score=375.92 Aligned_cols=248 Identities=44% Similarity=0.760 Sum_probs=229.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
.+.++|+||+|++.+|++|.+.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4678999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 304 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
|+|+++..++.+|+.|+..+||||||||||+++..|+... .....++.+++||.+||++....+++||+|||+|+.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998886432 23346779999999999998888999999999999999
Q ss_pred hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 005480 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (694)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~-------- 455 (694)
++++||||||+.|++++||.++|.+||+.+.++.++..++++..+|..|+||||+||.++|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ----------CcccCHHHHHHHHHHHHcC
Q 005480 456 ----------KAAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 456 ----------~~~It~~di~~Ai~~v~~g 474 (694)
...|+.+||.+|+.++.+.
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1268999999999875433
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.9e-38 Score=350.20 Aligned_cols=243 Identities=26% Similarity=0.450 Sum_probs=214.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~ 304 (694)
.++++|+||+|++.+|+++.+....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+..++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999999866543 3345678999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccch
Q 005480 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (694)
Q Consensus 305 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (694)
+|.++.+++.+|+.|+..+||||||||||.++..+... +......+++++|+..|+. .+.+|+||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999997654322 2234567888999998884 3567999999999999999
Q ss_pred hhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC--ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHH
Q 005480 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD--ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (694)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~--~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~ 462 (694)
+++|+||||+.+++++|+.++|.+||+.|+.+.... .+.+++.+|..|.||||+||+++|++|...|..+++ .++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHH
Confidence 999999999999999999999999999999886533 478899999999999999999999999999987764 68999
Q ss_pred HHHHHHHHHHcC
Q 005480 463 EIDDSIDRIVAG 474 (694)
Q Consensus 463 di~~Ai~~v~~g 474 (694)
|+..|+.++.+-
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999887643
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=324.24 Aligned_cols=227 Identities=35% Similarity=0.632 Sum_probs=205.7
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~ 300 (694)
...+|++.|+||+|++.+|+.|+|.|.. ++.|+.|.. +.++.+|+||||||||||++||+|+|.+++..|++++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 3467899999999999999999998876 888887763 34566899999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC-CCCeEEEEecCCc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRA 379 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p 379 (694)
+++|.|++++.++.+|+.|++++|+||||||||.++..|+.+ .++...++-.+||.+|.|... +.+|+|++|||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999988753 355677888999999999855 5689999999999
Q ss_pred cccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005480 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (694)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~ 454 (694)
+.||.|++| ||+++|+||+|+...|..+|+.|+...+.. .+.|+..|++.|+||||+||.-+++.|.+.-.|+
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887644 5668999999999999999999999998887764
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=325.55 Aligned_cols=226 Identities=40% Similarity=0.638 Sum_probs=210.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhc-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg-~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
..-.++|+||+|+++.++++++.|-. ++.|+.|..-+ .++|+|||||||||||||++|+|+|.+++.+|+.++.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 34578999999999999999998887 99999986433 35889999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCC--eEEEEecCCc
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRA 379 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~--ViVIaaTN~p 379 (694)
++|.|++.+.++.+|..|.+.+||||||||+|.+.+.|. .+.++.....-++|....||+.++.+ |+|+||||+|
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 999999999999999999999999999999999998884 34566777788999999999988765 9999999999
Q ss_pred cccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005480 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (694)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~ 454 (694)
..||.|++| |+.++++|++|+..+|++||+..+++.++++++|+..+|..|.||||.||.++|..|+...++.
T Consensus 242 ~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 242 FDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred ccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999988774
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.1e-35 Score=328.59 Aligned_cols=255 Identities=34% Similarity=0.593 Sum_probs=210.2
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------- 291 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p------- 291 (694)
+..+..|+++|+||+|++++++++++.+.. +.+|+.|..+|.++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 345667899999999999999999998877 899999999999999999999999999999999999998654
Q ss_pred ---eeeeehhhHHHHHhhhhhHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc
Q 005480 292 ---FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (694)
Q Consensus 292 ---fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (694)
|+.++++++..+|.|+++..++.+|+.++.. .||||||||+|.++++|+.+. .++....++++||.+||++
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhccc
Confidence 6677788899999999999999999998764 699999999999998886432 2344467889999999999
Q ss_pred cCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcC-CCCCcc---------ccHHHHHH----
Q 005480 365 EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-KKFDAD---------VSLDVIAM---- 430 (694)
Q Consensus 365 ~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~-~~l~~d---------vdl~~lA~---- 430 (694)
....+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++.. .++..+ .+...++.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999864 233111 11122211
Q ss_pred -------------------------hCCCCcHHHHHHHHHHHHHHHHHh----CCcccCHHHHHHHHHHHHcCcC
Q 005480 431 -------------------------RTPGFSGADLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAGME 476 (694)
Q Consensus 431 -------------------------~t~G~sgadL~~lv~eAa~~A~~~----~~~~It~~di~~Ai~~v~~g~~ 476 (694)
.++.+||++|+++|.+|...|..+ +...|+.+|+..|+..-....+
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~ 483 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESE 483 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccc
Confidence 145677888888888888777754 3457788888888776554443
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-34 Score=315.15 Aligned_cols=244 Identities=40% Similarity=0.664 Sum_probs=228.5
Q ss_pred CCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~ 304 (694)
..++ .+++|.......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5667 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcC-CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 305 VGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 305 ~G~~~~~vr~lF~~A~~~a-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
.|++++.+|..|+.|.+++ |+||||||||+++++|... .....++..+++..||+..+..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 9999999999999988652 2236678999999999999889999999999999999
Q ss_pred hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHH
Q 005480 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (694)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~d 463 (694)
++++| ||||+.+.+..|+..+|.+|++.+.+++++..++++..+|..|.||.|+||..+|++|...+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999887 8899
Q ss_pred HHHHHHHHHcCcCCccc
Q 005480 464 IDDSIDRIVAGMEGTVM 480 (694)
Q Consensus 464 i~~Ai~~v~~g~~~~~~ 480 (694)
|..|...+.+...+...
T Consensus 409 ~~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 409 FQEALMGIRPSALREIL 425 (693)
T ss_pred HHHHHhcCCchhhhhee
Confidence 99999887776655543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=303.83 Aligned_cols=281 Identities=33% Similarity=0.542 Sum_probs=229.4
Q ss_pred ccCCCCCCcccc--ccchHHHHHHH-H-HHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC-CCeeeee
Q 005480 222 MEPNTGVTFDDV--AGVDEAKQDFM-E-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSIS 296 (694)
Q Consensus 222 ~~~~~~~~f~dv--~G~~e~k~~L~-e-~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~-~pfi~vs 296 (694)
....|+..|+++ +|.+.....+. + ....+--|+...++|++.-+|+|||||||||||++||.|..-++ .+--.++
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN 289 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN 289 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC
Confidence 345678888875 57776665553 3 34447788999999999999999999999999999999999885 3556689
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHhc--------CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCC
Q 005480 297 GSEFVEMFVGVGASRVRDLFKKAKEN--------APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (694)
Q Consensus 297 ~s~~~~~~~G~~~~~vr~lF~~A~~~--------aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (694)
+.++.++|+|++++++|.+|..|.+. .-.||++||||+++++|++..+ +..-..+++||||..|||.+.-+
T Consensus 290 GPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLN 368 (744)
T KOG0741|consen 290 GPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLN 368 (744)
T ss_pred cHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhh
Confidence 99999999999999999999998431 1259999999999999987433 34456789999999999999999
Q ss_pred CeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCC----CCCccccHHHHHHhCCCCcHHHHHHHH
Q 005480 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIAMRTPGFSGADLANLL 444 (694)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~lA~~t~G~sgadL~~lv 444 (694)
+++||+-||+.|.+|+||+|||||..++++.+||..+|.+|++.|.+++ .++.|+|+..||..|..||||+|+.++
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 9999999999999999999999999999999999999999999998765 367899999999999999999999999
Q ss_pred HHHHHHHHHhC---------------CcccCHHHHHHHHHHHHcCcCCcc--cc----c---CCcchhhhHHHHHHHHHH
Q 005480 445 NEAAILAGRRG---------------KAAISSKEIDDSIDRIVAGMEGTV--MT----D---GKSKSLVAYHEVGHAICG 500 (694)
Q Consensus 445 ~eAa~~A~~~~---------------~~~It~~di~~Ai~~v~~g~~~~~--~~----~---~~~~~~va~hEaGhAvv~ 500 (694)
+.|...|..|. +-.|+++||..|++.+.+...... +. . ....+...+.+-|.-+|.
T Consensus 449 ksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~ 528 (744)
T KOG0741|consen 449 KSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQ 528 (744)
T ss_pred HHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHH
Confidence 99999997651 236899999999998876543221 00 0 112234445566777776
Q ss_pred hhc
Q 005480 501 TLT 503 (694)
Q Consensus 501 ~~l 503 (694)
.+-
T Consensus 529 qvk 531 (744)
T KOG0741|consen 529 QVK 531 (744)
T ss_pred Hhh
Confidence 543
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.7e-32 Score=318.30 Aligned_cols=249 Identities=49% Similarity=0.762 Sum_probs=226.3
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
.+.++|+||+|++++++.+++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 304 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
+.|.....++.+|+.+....|+||||||||.+..+++... .......+++|+..|+++..+..++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988775422 2234568889999999998888999999999999999
Q ss_pred hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 005480 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (694)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~-------- 455 (694)
++++|+|||++.+.++.|+.++|.+||+.+.+...+..++++..++..+.||+++|+..++++|+..+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999888888999999999999999999999999999887652
Q ss_pred -----------CcccCHHHHHHHHHHHHcCcC
Q 005480 456 -----------KAAISSKEIDDSIDRIVAGME 476 (694)
Q Consensus 456 -----------~~~It~~di~~Ai~~v~~g~~ 476 (694)
...++.+|+..|+..+.+...
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~ 440 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAI 440 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhcccccc
Confidence 125788999999987765543
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=6.3e-32 Score=287.20 Aligned_cols=262 Identities=17% Similarity=0.210 Sum_probs=197.0
Q ss_pred CCCCcccc-ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH
Q 005480 226 TGVTFDDV-AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (694)
Q Consensus 226 ~~~~f~dv-~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~ 304 (694)
...+|+++ .|+--++.-+..++..+... ....+|+++|++++||||||||||++|+++|++++++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34578888 66666666666655443221 12237889999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHh-----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc------------cCC
Q 005480 305 VGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------------EGN 367 (694)
Q Consensus 305 ~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~------------~~~ 367 (694)
+|++++.+|++|+.|+. .+||||||||||+++++|+.. ......+.+..+|++.||+. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999975 469999999999999888632 11222333347888888753 345
Q ss_pred CCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCC----CcHHHHHHH
Q 005480 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG----FSGADLANL 443 (694)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G----~sgadL~~l 443 (694)
.+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++..++ ..++..|+..++| |.||--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 67999999999999999999999999965 5899999999999999998776 5788999999887 677766666
Q ss_pred HHHHHHHHHHhCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHH
Q 005480 444 LNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICG 500 (694)
Q Consensus 444 v~eAa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~ 500 (694)
..++...-+.+- . ++..-.+++...++..........+-.+-|.||.++.
T Consensus 344 yd~~v~~~i~~~----g---~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 344 YDDEVRKWIAEV----G---VENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHh----h---HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 666655443321 1 2222233333322222222333445577889999886
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.1e-32 Score=314.51 Aligned_cols=252 Identities=35% Similarity=0.603 Sum_probs=222.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeeh
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~ 297 (694)
....++|++|+|.+..+++|+|.|.+ +-+|+.|..+++.+|+|||+|||||||||+.|+|+|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34578999999999999999999988 999999999999999999999999999999999999987 577888889
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 298 s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
.+..++|+|+.++.++.+|++|++..|+|||+||||-+.+.|+.. .......++..||..|||..+++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 999999999999999999999999999999999999998888542 23334567888999999999999999999999
Q ss_pred CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005480 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (694)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~ 456 (694)
+|+.+|||++||||||+.+++++|+.+.|.+|+..|.++.... ...-+..+|..|.||-|+||+.+|.+|++.+.++.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999998776522 223368899999999999999999999999988632
Q ss_pred ----------------cccCHHHHHHHHHHHHcCcCCc
Q 005480 457 ----------------AAISSKEIDDSIDRIVAGMEGT 478 (694)
Q Consensus 457 ----------------~~It~~di~~Ai~~v~~g~~~~ 478 (694)
..|...||..|+.++.+...+.
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 2366677777777776665553
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=281.59 Aligned_cols=244 Identities=35% Similarity=0.555 Sum_probs=209.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
..+++.|+|++|.+.+|+.+.+.+.+ +..|..|..+. .+++|+||.||||||||+|++|||.|++..|+.++++.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34678999999999999999999988 66688877553 45679999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC--CCCeEEEEecCCcc
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (694)
Q Consensus 303 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~p~ 380 (694)
+|+|++++.++.+|..|+...|+||||||||.+..+|.. ..++...+...++|.++++... +++|+||||||+|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999999843 3455566788888888887654 45799999999999
Q ss_pred ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC-CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC---
Q 005480 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK--- 456 (694)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~--- 456 (694)
.+|.+++| ||.++++||+||.+.|..+|+..+.+.+ ...+.+++.+++.|+|||+.||.++|.+|++--.+...
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 99999999 9999999999999999999999987763 33557799999999999999999999999876554322
Q ss_pred ----------cccCHHHHHHHHHHHHc
Q 005480 457 ----------AAISSKEIDDSIDRIVA 473 (694)
Q Consensus 457 ----------~~It~~di~~Ai~~v~~ 473 (694)
..|+..|+..++..+.+
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred hhhhcchhccCCCCcchHHHHHHhhcc
Confidence 33455666666655443
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=5.3e-21 Score=202.53 Aligned_cols=213 Identities=21% Similarity=0.320 Sum_probs=162.4
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCc---eEEEEcCCCChHHHHHHHHHHhc-------CCCeeeeehhh
Q 005480 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK---GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 299 (694)
Q Consensus 230 f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~pr---gVLL~GPpGTGKT~LArAlA~e~-------~~pfi~vs~s~ 299 (694)
+++++|++++|+++++++.++..++.+...|...|. +++|+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 458999999999999999887777777788876653 48999999999999999998875 24799999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
+...+.|.++...+.+|+.+. ++||||||+|.+...++ .++.....+..|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999988888888888874 46999999999965332 1233456777788888753 3567888887642
Q ss_pred c-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC--CCcccc---HHHHHHh--CCCCc-HHHHHHHHHH
Q 005480 380 D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVS---LDVIAMR--TPGFS-GADLANLLNE 446 (694)
Q Consensus 380 ~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvd---l~~lA~~--t~G~s-gadL~~lv~e 446 (694)
. .++|++.+ ||+..|.|+.|+.+++.+|++.++.+.. +.++.. ...+.+. .+.|. ++++++++..
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 33589998 9999999999999999999999987644 333221 1222222 23344 8999999988
Q ss_pred HHHHHHHh
Q 005480 447 AAILAGRR 454 (694)
Q Consensus 447 Aa~~A~~~ 454 (694)
|...-..|
T Consensus 250 ~~~~~~~r 257 (287)
T CHL00181 250 ARMRQANR 257 (287)
T ss_pred HHHHHHHH
Confidence 87665443
No 40
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-21 Score=210.74 Aligned_cols=207 Identities=24% Similarity=0.344 Sum_probs=164.1
Q ss_pred CCccccccchHHHHHHHH-HHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhh
Q 005480 228 VTFDDVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (694)
Q Consensus 228 ~~f~dv~G~~e~k~~L~e-~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G 306 (694)
-+|+-++=-.+.|+++.+ +.+|++..+-|++.|..--||.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 689999999999999876 666789999999999999999999999999999999999999999999988876432
Q ss_pred hhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCC---CCC-hhHHHHHHHHHhhhcCccCCC--CeEEEEecCCcc
Q 005480 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG---GGN-DEREQTLNQLLTEMDGFEGNT--GIIVIAATNRAD 380 (694)
Q Consensus 307 ~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~---~~~-~e~~~~l~~LL~~ld~~~~~~--~ViVIaaTN~p~ 380 (694)
.. .++.++..+... +||+|++||+-...+..... ... ....-++..||+.+||+.+.+ .-|||.|||+++
T Consensus 274 -n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 22 377777766544 69999999997653332111 111 134468999999999998877 689999999999
Q ss_pred ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC-CCccccHHHHHHhCCCCcHHHHHHH
Q 005480 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANL 443 (694)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~lA~~t~G~sgadL~~l 443 (694)
.|||||+||||.|.+|++...+..+-+.+++.++.... ..---+++.+...+. .||||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHH
Confidence 99999999999999999999999999999999987533 111111333333333 699998654
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.7e-21 Score=178.89 Aligned_cols=130 Identities=45% Similarity=0.772 Sum_probs=116.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcC-CeEEEEccccccccccCCCCCC
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGG 345 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~a-P~ILfIDEID~l~~~r~~~~~~ 345 (694)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+.....++.+|+.++... ||||||||+|.+..+. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 699999999999999999999999999999999998888999999999999999887 9999999999998776 123
Q ss_pred CChhHHHHHHHHHhhhcCccCC-CCeEEEEecCCccccchhhcCCCccceeeeccC
Q 005480 346 GNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (694)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~ 400 (694)
........++.|+..++..... .+++||++||.++.++++++| +||+..|++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4666778899999999987765 569999999999999999998 89999999874
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.3e-20 Score=195.15 Aligned_cols=212 Identities=19% Similarity=0.306 Sum_probs=159.0
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeeehh
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~p---rgVLL~GPpGTGKT~LArAlA~e~-------~~pfi~vs~s 298 (694)
.+++++|++++|+.+++++.+..........|...+ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 368999999999999999988766555556666543 369999999999999999999864 3478899999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 299 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
++...++|.....++++|+.+. ++||||||+|.+... +..+.....++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998874 479999999999531 11223355678888888864 345666666543
Q ss_pred cc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCC--CccccHHHHHHh---------CCCCcHHHHHH
Q 005480 379 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF--DADVSLDVIAMR---------TPGFSGADLAN 442 (694)
Q Consensus 379 p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l--~~dvdl~~lA~~---------t~G~sgadL~~ 442 (694)
.+ .++|++.+ ||+..+.++.++.+++.+|++.++..... +++. +..++.. ...-+++.+.|
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 22 46889998 99989999999999999999999876543 2222 2333211 12246788888
Q ss_pred HHHHHHHHHHHh
Q 005480 443 LLNEAAILAGRR 454 (694)
Q Consensus 443 lv~eAa~~A~~~ 454 (694)
++..|......+
T Consensus 230 ~~e~a~~~~~~r 241 (261)
T TIGR02881 230 IIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHH
Confidence 888877665443
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.9e-20 Score=198.27 Aligned_cols=211 Identities=20% Similarity=0.295 Sum_probs=163.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCC--C-ceEEEEcCCCChHHHHHHHHHHhcC-------CCeeeeehhhH
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARI--P-KGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSISGSEF 300 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~--p-rgVLL~GPpGTGKT~LArAlA~e~~-------~pfi~vs~s~~ 300 (694)
++++|++++|+++.+++.++..++.+.+.|... | .+++|+||||||||++|+++|..+. .+|++++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 379999999999999999988888888888775 3 4899999999999999999988662 37999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc-
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA- 379 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p- 379 (694)
...+.|.+...++++|+.+. +++|||||+|.+.+.+. ..+.....++.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 99999988888889998874 37999999999854322 1233456677788888743 4578888887642
Q ss_pred -c---ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCC--CccccHHHHHHh------CCC-CcHHHHHHHHHH
Q 005480 380 -D---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF--DADVSLDVIAMR------TPG-FSGADLANLLNE 446 (694)
Q Consensus 380 -~---~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l--~~dvdl~~lA~~------t~G-~sgadL~~lv~e 446 (694)
+ .++|++.+ ||+..|.+|.++.+++..|++.++.+... ..+. ...+... .+. -++++++++++.
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 3 24799999 99999999999999999999999877543 2221 2333322 111 358999999988
Q ss_pred HHHHHHHh
Q 005480 447 AAILAGRR 454 (694)
Q Consensus 447 Aa~~A~~~ 454 (694)
|......+
T Consensus 249 ~~~~~~~r 256 (284)
T TIGR02880 249 ARLRQANR 256 (284)
T ss_pred HHHHHHHH
Confidence 87666543
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.6e-20 Score=197.48 Aligned_cols=233 Identities=23% Similarity=0.352 Sum_probs=174.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHh
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~ 305 (694)
..-.|++|+-....+..++.+...-.+.+. ...+=++||+|||||||||++|+-||...|..+-.+.+.+... .-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 344599999999999999988776544432 1223468999999999999999999999999998888877543 22
Q ss_pred hhhhHHHHHHHHHHHhcC-CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccch
Q 005480 306 GVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (694)
Q Consensus 306 G~~~~~vr~lF~~A~~~a-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (694)
..+...+..+|+-+++.. .-+|||||.|++.-.|.. ...++.....||.||-.... ...+++++.+||+|..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTGd--qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhcc--cccceEEEeccCCccchhH
Confidence 334567899999997644 468999999999877754 23345567789999876542 3457899999999999999
Q ss_pred hhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC------------------------c---cccHHHHHHhCCCCcH
Q 005480 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD------------------------A---DVSLDVIAMRTPGFSG 437 (694)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~------------------------~---dvdl~~lA~~t~G~sg 437 (694)
++-. |||..|+||+|..++|..+|..|+.+.-.. . +--+...|+.|+||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9988 999999999999999999999887543211 0 0115677899999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
++|..|+-.-...+..+....++...|++.++
T Consensus 579 REiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 579 REIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 99999985444333333334555555554443
No 45
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.1e-19 Score=198.06 Aligned_cols=208 Identities=25% Similarity=0.458 Sum_probs=173.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCC
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGT 341 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~ 341 (694)
..--.+||+|+||||||++++++|.++|.+++.++|.++...-.+..+..+...|..|+...|+|||+-++|.++..+..
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 33346999999999999999999999999999999999999888888889999999999999999999999999854432
Q ss_pred CCCCCChhHHHHHHHHHhhhcCcc-CCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC
Q 005480 342 GIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD 420 (694)
Q Consensus 342 ~~~~~~~e~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~ 420 (694)
+..-...+.++.++. .|.+. +..+++||++|+..+.+++.+++ .|-..|.++.|+.++|.+||+.++....+.
T Consensus 509 ---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 509 ---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred ---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 223334455555554 44444 56689999999999999999998 677789999999999999999999999999
Q ss_pred ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH----hC----------------CcccCHHHHHHHHHHHHcCc
Q 005480 421 ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR----RG----------------KAAISSKEIDDSIDRIVAGM 475 (694)
Q Consensus 421 ~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~----~~----------------~~~It~~di~~Ai~~v~~g~ 475 (694)
.++.+..++.+|.||+.+|+..++..+-..+.. .+ ...++++||.+|+++.....
T Consensus 583 ~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~f 657 (953)
T KOG0736|consen 583 QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEF 657 (953)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhh
Confidence 999999999999999999999998776322221 11 15789999999999876543
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3e-18 Score=191.89 Aligned_cols=262 Identities=21% Similarity=0.240 Sum_probs=194.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehhhHHHHHhh
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVG 306 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s~~~~~~~G 306 (694)
.|++-...+|++.-+ ..-.| ...+.+|||+||+|+|||.|+++++.+. .+.+.+++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 555556666665544 21122 2223479999999999999999999987 456778999998877677
Q ss_pred hhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh-cCc-cCCCCeEEEEecCCccccch
Q 005480 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGF-EGNTGIIVIAATNRADILDS 384 (694)
Q Consensus 307 ~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l-d~~-~~~~~ViVIaaTN~p~~LD~ 384 (694)
...+.++.+|..+.+++|+||++|++|.+....+. .++......+.++.+|.++ +.+ ..+..+.|||+.+....++|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 77888999999999999999999999999872222 2233334444555555332 223 33455799999999999999
Q ss_pred hhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----CCccc
Q 005480 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR----GKAAI 459 (694)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~----~~~~I 459 (694)
-|.+|++|+-++.++.|+..+|.+||+..+.+.... ..-|++-++..|+||...|+..++.+|...|... +...+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999998776522 1223555999999999999999999999988732 33478
Q ss_pred CHHHHHHHHHHHHcCcCCccccc----CCcchhhhHHHHHHHHHHhhc
Q 005480 460 SSKEIDDSIDRIVAGMEGTVMTD----GKSKSLVAYHEVGHAICGTLT 503 (694)
Q Consensus 460 t~~di~~Ai~~v~~g~~~~~~~~----~~~~~~va~hEaGhAvv~~~l 503 (694)
|.++|.+++....+-.-+..... ..-..+-.+||+..++...+.
T Consensus 637 tke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~ 684 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIE 684 (952)
T ss_pred hHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHh
Confidence 99999999998876554443221 122345578888888766543
No 47
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-17 Score=189.92 Aligned_cols=220 Identities=44% Similarity=0.727 Sum_probs=198.7
Q ss_pred hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEE
Q 005480 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (694)
Q Consensus 250 l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfI 329 (694)
+..++.++.++..+|++++++||||||||++++++|.+ +..++.+++.+....+.|......+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677889999999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHH
Q 005480 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (694)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~I 409 (694)
||+|.+.+.+.. .........+.+++..++++.... +++++.||++..+|+++.+|+||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988866 233445678889999999988444 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------CcccCHHHHHHHHHHHHcC
Q 005480 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------KAAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 410 l~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~------~~~It~~di~~Ai~~v~~g 474 (694)
+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999998888888899999999999999999999999999998875 3468899999999987653
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.79 E-value=4.2e-18 Score=183.84 Aligned_cols=220 Identities=25% Similarity=0.324 Sum_probs=163.1
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
.+.++.+|+|++|+++.++.+...+...+.+ ..++.++||+||||||||++|+++|++++..+..++++.+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 3455679999999999999999888764332 134668999999999999999999999999988877654321
Q ss_pred HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh------cC-cc------CCCC
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DG-FE------GNTG 369 (694)
Q Consensus 303 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l------d~-~~------~~~~ 369 (694)
...+..++... ..++||||||||.+.. ..+..+..++... +. .. .-.+
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12334444443 3468999999999831 2222333322211 00 00 1134
Q ss_pred eEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005480 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (694)
Q Consensus 370 ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa 448 (694)
+.+|++||++..++++|.+ ||...+.++.|+.+++.+|++..+...++. ++..+..++..+.|. ++.+.++++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 7899999999999999988 998899999999999999999887665443 222377888888875 688999999988
Q ss_pred HHHHHhCCcccCHHHHHHHHHHH
Q 005480 449 ILAGRRGKAAISSKEIDDSIDRI 471 (694)
Q Consensus 449 ~~A~~~~~~~It~~di~~Ai~~v 471 (694)
..|..++...|+.+++..+++.+
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHh
Confidence 88877777789999999999753
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=4e-18 Score=181.63 Aligned_cols=210 Identities=24% Similarity=0.331 Sum_probs=154.9
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhh
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 308 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~ 308 (694)
+|+|++|+++.++.+...+...+.. ...+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 7999999999999998888653322 123567999999999999999999999998887766543221
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc----------------CCCCeEE
Q 005480 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------GNTGIIV 372 (694)
Q Consensus 309 ~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~----------------~~~~ViV 372 (694)
...+...+... ..+.+|||||+|.+.. ..+.. |+..|+... ...++++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHH---hhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11222333332 3467999999999832 22222 333332211 1234889
Q ss_pred EEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005480 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 373 IaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (694)
|++||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..++.++..+.|. ++.+.++++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHH
Confidence 9999999999999998 998889999999999999999887654332 222367888888875 578889999888888
Q ss_pred HHhCCcccCHHHHHHHHHH
Q 005480 452 GRRGKAAISSKEIDDSIDR 470 (694)
Q Consensus 452 ~~~~~~~It~~di~~Ai~~ 470 (694)
...+...|+.+++..+++.
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 7777778999999999876
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-18 Score=180.82 Aligned_cols=237 Identities=22% Similarity=0.271 Sum_probs=173.5
Q ss_pred ccccccchHHHHHHHHHHHH-hcCchhhhhhc-CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehh
Q 005480 230 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS 298 (694)
Q Consensus 230 f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg-~~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s 298 (694)
|+.++=-...|+++...+.. +.-.++-..-. +...|-+|||||||||||+|+||+|..+ ...++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 56666667888888776544 33222211111 1233569999999999999999999977 3467899999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHhc---CCe--EEEEccccccccccCCC-CCCCChhHHHHHHHHHhhhcCccCCCCeEE
Q 005480 299 EFVEMFVGVGASRVRDLFKKAKEN---APC--IVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (694)
Q Consensus 299 ~~~~~~~G~~~~~vr~lF~~A~~~---aP~--ILfIDEID~l~~~r~~~-~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (694)
.+.++|.+++.+.+..+|++.... ..+ .++|||+++++..|.+. .+......-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999987542 222 45699999999888433 333455567899999999999999999999
Q ss_pred EEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC-------------CCcccc-----HHHHHHh-CC
Q 005480 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-------------FDADVS-----LDVIAMR-TP 433 (694)
Q Consensus 373 IaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~-------------l~~dvd-----l~~lA~~-t~ 433 (694)
++|+|..+.||.|+.. |-|-+.++.+|+...+.+|++.++.+.- ....+. ...++.. +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999988754321 101111 1222222 58
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 005480 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (694)
Q Consensus 434 G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~ 470 (694)
|.||+-|+.+=--|...- -....|+.++|..|+-.
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 999999887754443222 12347888888776643
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=8.6e-18 Score=169.43 Aligned_cols=193 Identities=28% Similarity=0.382 Sum_probs=128.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
.-++.+|+|++|+++.+..+.-+++..+... ....++|||||||+|||+||+.+|++++.+|..++++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 3456799999999999999888777644321 12337999999999999999999999999999998865321
Q ss_pred HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc--------CC--------
Q 005480 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GN-------- 367 (694)
Q Consensus 304 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~-------- 367 (694)
...+..++.... ...||||||||.+ +...++. |+..|+++. .+
T Consensus 89 -----~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~---LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 89 -----AGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEI---LLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHH---HHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred -----HHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHH---HHHHhccCeEEEEeccccccceeeccC
Confidence 223344444443 3469999999999 3334444 444444432 11
Q ss_pred CCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccc-cHHHHHHhCCCCcHHHHHHHHHH
Q 005480 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNE 446 (694)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~lA~~t~G~sgadL~~lv~e 446 (694)
.++.+|+||++...|.+.|+. ||.-...+..++.++..+|++......++.-+. ....||.++.| +|+-..++++.
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 258899999999999999998 999888999999999999999887776655332 36778888886 57766667665
Q ss_pred HH
Q 005480 447 AA 448 (694)
Q Consensus 447 Aa 448 (694)
+.
T Consensus 225 vr 226 (233)
T PF05496_consen 225 VR 226 (233)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=1e-17 Score=191.41 Aligned_cols=259 Identities=21% Similarity=0.263 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCC--CCCcc-cccc----ccccccccCCCCCCccccccchHHHHHHHHHHHHhcCc
Q 005480 181 AFPLILIGGLFLLSRRSSGGMGGPGG--PGFPL-AFGQ----SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKP 253 (694)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~----s~~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p 253 (694)
++..+++|.+||..-+.+.+....-. ....+ ...+ +-..-..++.++.+|+|++|++++++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~----- 82 (531)
T TIGR02902 8 IIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC----- 82 (531)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh-----
Confidence 34567788888877776654210000 00000 0000 111223456788999999999999988875431
Q ss_pred hhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeeehhhH-------HHHHhhhhh-------
Q 005480 254 ERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEF-------VEMFVGVGA------- 309 (694)
Q Consensus 254 ~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~vs~s~~-------~~~~~G~~~------- 309 (694)
...+.++||+||||||||++|+++...+ +.||+.++|... .+...+...
T Consensus 83 -------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~ 155 (531)
T TIGR02902 83 -------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGA 155 (531)
T ss_pred -------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccc
Confidence 1234589999999999999999997642 468999998631 111111100
Q ss_pred ---------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh----c-----Cc-------
Q 005480 310 ---------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM----D-----GF------- 364 (694)
Q Consensus 310 ---------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l----d-----~~------- 364 (694)
......+..+ ...+|||||||.+ +...+..+..+++.- + +.
T Consensus 156 ~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L-----------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~ 221 (531)
T TIGR02902 156 GPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL-----------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSH 221 (531)
T ss_pred cccccCCcccccCchhhcc---CCcEEEEechhhC-----------CHHHHHHHHHHHHhCeeeeccccccccCcccccc
Confidence 0001122222 3469999999999 333333333333321 0 00
Q ss_pred -------cCCCCeEEE-EecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCC
Q 005480 365 -------EGNTGIIVI-AATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGF 435 (694)
Q Consensus 365 -------~~~~~ViVI-aaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~ 435 (694)
....++.+| +|||.|+.+++++++ |+. .+.++.++.+++.+|++..+++..+. ++..++.++..+ .
T Consensus 222 ~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~ 296 (531)
T TIGR02902 222 IHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--S 296 (531)
T ss_pred hhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--h
Confidence 011234555 555689999999998 774 67888889999999999998766543 222355666655 3
Q ss_pred cHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 005480 436 SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (694)
Q Consensus 436 sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~ 470 (694)
+++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 297 n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 297 NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 79999999999999998888889999999999763
No 53
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=9.7e-18 Score=198.69 Aligned_cols=225 Identities=23% Similarity=0.341 Sum_probs=164.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeee
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~v 295 (694)
.+-++++++|.++..+.+.+++..- ...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 4568999999999888766555321 23479999999999999999999987 6779999
Q ss_pred ehhhHH--HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEE
Q 005480 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (694)
Q Consensus 296 s~s~~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (694)
+++.+. ..|.|..+.+++.+|+.+++..|+||||||||.+.+.+... ++.... .+.|...+. +..+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~~---~~~L~~~l~----~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMDA---SNLLKPALS----SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHHH---HHHHHHHHh----CCCeEEE
Confidence 998887 46889999999999999988889999999999997654321 111122 223333333 5679999
Q ss_pred EecCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCC----CC-CccccHHHHHHhCCCCc-----HH
Q 005480 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KF-DADVSLDVIAMRTPGFS-----GA 438 (694)
Q Consensus 374 aaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~----~l-~~dvdl~~lA~~t~G~s-----ga 438 (694)
++||..+ ..|+++.| ||+ .|.++.|+.+++.+|++...... .+ -.+..+..++..+..|- |.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999744 57999999 997 79999999999999999665432 11 12233556666555443 33
Q ss_pred HHHHHHHHHHHHHHHh----CCcccCHHHHHHHHHHHHcC
Q 005480 439 DLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 439 dL~~lv~eAa~~A~~~----~~~~It~~di~~Ai~~v~~g 474 (694)
-.-.++++|+.....+ ....|+.+|+.+++.++..-
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgi 432 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHI 432 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCC
Confidence 3456777777654332 23569999999999987543
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.73 E-value=3.9e-17 Score=192.28 Aligned_cols=226 Identities=22% Similarity=0.318 Sum_probs=162.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeee
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~v 295 (694)
..-.++.++|.++..+.+.+++..- .+.++||+||||||||++|+++|... +..++.+
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 3456889999999988888766542 13368999999999999999999864 4556666
Q ss_pred ehhhHH--HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEE
Q 005480 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (694)
Q Consensus 296 s~s~~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (694)
+.+.+. ..|.|..+.+++.+|+.+.+..++||||||||.+.+.+.. .++......++..++ .+..+.+|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L-------~~g~i~vI 319 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLL-------SSGKIRVI 319 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHH-------hCCCeEEE
Confidence 666665 4578888999999999998888999999999999765432 111222222333333 25679999
Q ss_pred EecCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCcccc-----HHHHHHh-----CCCCcHH
Q 005480 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-----LDVIAMR-----TPGFSGA 438 (694)
Q Consensus 374 aaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvd-----l~~lA~~-----t~G~sga 438 (694)
++||.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+........+++ +...+.. ...+-|.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 9999865 57999999 996 799999999999999998765544333333 2222222 2334566
Q ss_pred HHHHHHHHHHHHHH----HhCCcccCHHHHHHHHHHHHcCc
Q 005480 439 DLANLLNEAAILAG----RRGKAAISSKEIDDSIDRIVAGM 475 (694)
Q Consensus 439 dL~~lv~eAa~~A~----~~~~~~It~~di~~Ai~~v~~g~ 475 (694)
....++++|+.... ...+..|+.+|+.+.+.+...-+
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 78889999986543 22345689999999998876443
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.73 E-value=8.8e-17 Score=172.01 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=141.4
Q ss_pred CCCCCccccccchHHHHH---HHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 225 NTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~---L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
-++.+++|++|+++...+ |+..++.-. ..+.+||||||||||+||+.||+..+.+|..+|..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~~------------l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--- 82 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAGH------------LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--- 82 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcCC------------CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---
Confidence 346799999999988754 334443211 23699999999999999999999999999999873
Q ss_pred HHHhhhhhHHHHHHHHHHHhcC----CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec-
Q 005480 302 EMFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT- 376 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~a----P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT- 376 (694)
..+.+.+|.+|+.|++.. ..||||||||.+- ...| ..||-.++ +..|++||||
T Consensus 83 ----~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQ---D~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 ----TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQ---DALLPHVE----NGTIILIGATT 140 (436)
T ss_pred ----cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhh---hhhhhhhc----CCeEEEEeccC
Confidence 345678999999996533 4899999999992 2222 34555555 6778999988
Q ss_pred -CCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc--CCCCC------ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005480 377 -NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFD------ADVSLDVIAMRTPGFSGADLANLLNEA 447 (694)
Q Consensus 377 -N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~--~~~l~------~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (694)
|..-.|.+||++ |. +++++.+.+.++..++++..+. ..++. ++...+.++..+.|- .+-.-|++..+
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD-~R~aLN~LE~~ 216 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD-ARRALNLLELA 216 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch-HHHHHHHHHHH
Confidence 566789999999 44 4678999999999999987332 22232 222356677766653 22233444444
Q ss_pred HHHHHHhCCcccCHHHHHHHHHHHH
Q 005480 448 AILAGRRGKAAISSKEIDDSIDRIV 472 (694)
Q Consensus 448 a~~A~~~~~~~It~~di~~Ai~~v~ 472 (694)
...+ +.+. .++.+++++.+.+..
T Consensus 217 ~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 217 ALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred HHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 4333 2222 444788888776643
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=8e-17 Score=165.38 Aligned_cols=217 Identities=26% Similarity=0.350 Sum_probs=168.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~ 304 (694)
-++.+|+|.+|++++|+.+.-.+...+... ...-++|||||||.|||+||..+|+++|+.+-..++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 346789999999999999998887654332 33458999999999999999999999999999998876532
Q ss_pred hhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC----------------CC
Q 005480 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG----------------NT 368 (694)
Q Consensus 305 ~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~----------------~~ 368 (694)
+..+-.++.....+ +|+||||||++.+ ..+.++ .-.|++|.- -.
T Consensus 91 ----~gDlaaiLt~Le~~--DVLFIDEIHrl~~-----------~vEE~L---YpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ----PGDLAAILTNLEEG--DVLFIDEIHRLSP-----------AVEEVL---YPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----hhhHHHHHhcCCcC--CeEEEehhhhcCh-----------hHHHHh---hhhhhheeEEEEEccCCccceEeccCC
Confidence 22334444444433 7999999999932 233333 334544421 12
Q ss_pred CeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHH
Q 005480 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEA 447 (694)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eA 447 (694)
++.+|+||.+...|...|+. ||.....+..++.++..+|+........+.-+ .....+|+++.| +|+=...|+++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 58899999999999999988 99999999999999999999988766655432 236788998886 578778899999
Q ss_pred HHHHHHhCCcccCHHHHHHHHHHHHc
Q 005480 448 AILAGRRGKAAISSKEIDDSIDRIVA 473 (694)
Q Consensus 448 a~~A~~~~~~~It~~di~~Ai~~v~~ 473 (694)
.-.|.-++...|+.+-..+|++....
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHhCc
Confidence 99999899999999999999887643
No 57
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=4.2e-17 Score=194.36 Aligned_cols=164 Identities=30% Similarity=0.410 Sum_probs=123.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH---------
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--------- 301 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~--------- 301 (694)
+++.|++++|+.+.+.+....... ...+..+||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 468999999999988765422111 11223699999999999999999999999999999875432
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcC-----cc--------CCC
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~-----~~--------~~~ 368 (694)
..|.|.....+...|..+....| ||||||||.+.+... ++ ..+.|+..+|. |. ...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----CC-----HHHHHHHhcCHHhcCccccccCCceeccC
Confidence 24566667778888888866665 789999999964221 11 23344444442 11 124
Q ss_pred CeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhh
Q 005480 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (694)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l 414 (694)
++++|+|||.++.++++|++ ||+ .|+++.|+.+++.+|++.++
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 78999999999999999999 995 78999999999999998876
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.72 E-value=1.4e-16 Score=176.88 Aligned_cols=242 Identities=19% Similarity=0.338 Sum_probs=159.4
Q ss_pred CCCCCccc-cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehh
Q 005480 225 NTGVTFDD-VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (694)
Q Consensus 225 ~~~~~f~d-v~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s 298 (694)
.+..+|++ ++|.+. ......+.....+|. ....+++||||||+|||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 35678999 445433 222222222233331 223479999999999999999999876 6789999999
Q ss_pred hHHHHHhhhhhH-HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 299 EFVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 299 ~~~~~~~G~~~~-~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
+|...+...... .+..+.+..+ .+.+|+|||+|.+.++. ..+..+..++..+. .+...+||+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~---~~~~~iiits~~ 241 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALH---ENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHH---HCCCCEEEecCC
Confidence 887665433211 1222222222 35799999999984321 22233333333322 233446666665
Q ss_pred Cccc---cchhhcCCCccce--eeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005480 378 RADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 378 ~p~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (694)
.|.. +++.+.+ ||.. .+.++.||.++|.+|++..+....+. ++..++.||....+ +.++|+.+++.....|
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6654 5678887 8865 79999999999999999998765443 23337778887764 6899999999998888
Q ss_pred HHhCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhh
Q 005480 452 GRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (694)
Q Consensus 452 ~~~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~~~ 502 (694)
...+ ..||.+.+.+++...... .++.+..+++-++|+..+
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~~~----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLLRA----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhccc----------cCCCCCHHHHHHHHHHHc
Confidence 6555 569999999998764322 123467788888887654
No 59
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.71 E-value=1.2e-16 Score=179.62 Aligned_cols=295 Identities=18% Similarity=0.300 Sum_probs=185.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehhh
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s~ 299 (694)
.+..+|++.+..+........+.....+|. ....+++||||||||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 456789996533333323332223233331 123469999999999999999999987 56799999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
|...+..........-|..... .+.+|+|||+|.+..++ ..++.+..++..+ ..+...+||+++..|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~l---~~~~~~iiits~~~p 255 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE---------RTQEEFFHTFNAL---HEAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH---------HHHHHHHHHHHHH---HHCCCcEEEECCCCH
Confidence 8876654432222222333222 46799999999984321 1222333333322 223344666666666
Q ss_pred cc---cchhhcCCCccce--eeeccCCCHHHHHHHHHHhhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005480 380 DI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (694)
Q Consensus 380 ~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (694)
.. +++.+.+ ||.. .+.+..||.++|.+|++..+...+ ++++ .++.||....| +.++|..+++.....|.
T Consensus 256 ~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 256 KELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE-VLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 55 6788888 8864 899999999999999999887544 3343 37788887764 68999999999988876
Q ss_pred HhCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccCC----CcCceEEeec
Q 005480 453 RRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG----QARGLTWFIP 528 (694)
Q Consensus 453 ~~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~prg----~~~G~~~~~p 528 (694)
..+ ..||.+.+.+++..+.... ++.+...++-++|+..+--....+. --.|. .+....+|+-
T Consensus 332 ~~~-~~it~~~~~~~l~~~~~~~----------~~~~~~~~i~~~v~~~~~i~~~~l~---~~~R~~~~~~aR~iamyl~ 397 (450)
T PRK00149 332 LTG-KPITLELAKEALKDLLAAQ----------KKKITIENIQKVVAEYYNIKVSDLK---SKSRTRNIARPRQIAMYLA 397 (450)
T ss_pred hhC-CCCCHHHHHHHHHHhhccC----------CCCCCHHHHHHHHHHHcCCCHHHHh---CCCCCcccChHHHHHHHHH
Confidence 665 4599999999998764211 1224555666666654422111111 11111 1223344443
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCC
Q 005480 529 SDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPE 562 (694)
Q Consensus 529 ~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~ 562 (694)
. ..+.+| +.+|...+|||-.-.++.+...
T Consensus 398 ~-~~~~~s----~~~Ig~~fg~rdhstV~~a~~~ 426 (450)
T PRK00149 398 K-ELTDLS----LPEIGRAFGGRDHTTVLHAVRK 426 (450)
T ss_pred H-HhcCCC----HHHHHHHcCCCCHhHHHHHHHH
Confidence 2 233445 7788888999888888876543
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.2e-15 Score=169.88 Aligned_cols=213 Identities=19% Similarity=0.247 Sum_probs=151.5
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------e
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F 293 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-------i 293 (694)
..++.++.+|+||+|++.+...|...+.. .+.+..+||+||||||||++|+++|+.+++.- .
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 34567888999999999999988887752 23455799999999999999999999887631 0
Q ss_pred ee-ehhhHHHH----------HhhhhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 294 SI-SGSEFVEM----------FVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 294 ~v-s~s~~~~~----------~~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
.+ +|..+... -...+...+|++.+.+. .....|+||||+|.+. ...++.||
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NALL 142 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNALL 142 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHHH
Confidence 00 11111110 01123345666655553 2345699999999992 34678888
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (694)
..++. ...++++|.+|+.++.|.+++++ |+ ..+.+..++.++..+.++..+...++. ++..+..|+..+.| +.
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 88874 45678999999999999999999 76 357888888888888888877655443 23347788888876 57
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
++..+++..+...+ ...||.+++.+.+
T Consensus 217 RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 217 RDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 88888888766432 2358888876655
No 61
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.67 E-value=3.3e-15 Score=162.98 Aligned_cols=223 Identities=21% Similarity=0.273 Sum_probs=152.8
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeeeeeh
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISG 297 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~---------~pfi~vs~ 297 (694)
....++++|.++.++++...+...... ..|.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 344568999999999988877653221 2345799999999999999999987652 57888888
Q ss_pred hhHHH----------HHh--hh--------hhHHHHHHHHHHH-hcCCeEEEEccccccccccCCCCCCCChhHHHHHHH
Q 005480 298 SEFVE----------MFV--GV--------GASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ 356 (694)
Q Consensus 298 s~~~~----------~~~--G~--------~~~~vr~lF~~A~-~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~ 356 (694)
..... .+. +. ..+....+++... ...+.||+|||+|.+... .+..+.+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~ 151 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQ 151 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHh
Confidence 54321 111 11 1122344555443 345789999999999521 1125556
Q ss_pred HHhhhcC-ccCCCCeEEEEecCCcc---ccchhhcCCCccc-eeeeccCCCHHHHHHHHHHhhcCC----CCCccc-c-H
Q 005480 357 LLTEMDG-FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADV-S-L 425 (694)
Q Consensus 357 LL~~ld~-~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd-r~I~i~~Pd~~eR~~Il~~~l~~~----~l~~dv-d-l 425 (694)
|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++... .+++++ + +
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 229 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLC 229 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHH
Confidence 6544221 12236789999999875 57888877 675 579999999999999999887521 122221 1 2
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 005480 426 DVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (694)
Q Consensus 426 ~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v 471 (694)
..++..+.|. .+.+.++|+.|...|..++...|+.+|+.+|++.+
T Consensus 230 ~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 230 AALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2344445554 56667899999999999899999999999999876
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=99.67 E-value=1.3e-15 Score=172.65 Aligned_cols=212 Identities=22% Similarity=0.284 Sum_probs=150.0
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~ 299 (694)
.|.++.++.+|+||+|.+++++.+.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 467888899999999999999999998865442 133678999999999999999999999999999999887
Q ss_pred HHHHHhhhhhHHHHHHHHHHHh------cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEE
Q 005480 300 FVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~~------~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (694)
.... ..++.+...+.. ..+.+|+|||+|.+..+. ....++.|+..++. .+..+|
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iI 134 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPII 134 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEE
Confidence 5421 122332222211 246799999999984311 11234445555542 233466
Q ss_pred EecCCccccch-hhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005480 374 AATNRADILDS-ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 374 aaTN~p~~LD~-aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (694)
.++|.+..+++ .+.+ |. ..|.|+.|+..+...+++..+...++. ++..+..|+..+. +|++.+++.....+
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a 207 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA 207 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh
Confidence 67888887777 5554 33 579999999999999999887655433 2334777887664 47888888776644
Q ss_pred HHhCCcccCHHHHHHHH
Q 005480 452 GRRGKAAISSKEIDDSI 468 (694)
Q Consensus 452 ~~~~~~~It~~di~~Ai 468 (694)
.+...|+.+++....
T Consensus 208 --~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 --EGYGKLTLEDVKTLG 222 (482)
T ss_pred --cCCCCCcHHHHHHhh
Confidence 455678888887554
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.67 E-value=2.2e-15 Score=167.72 Aligned_cols=203 Identities=28% Similarity=0.410 Sum_probs=145.2
Q ss_pred cCCCCCCccccccchHHHHH---HHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 005480 223 EPNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~---L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~ 299 (694)
+..++.+|+|++|+++.... +.+++.. . .+.+++|+||||||||++|+++|+..+.+|+.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~---~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA---G---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc---C---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34566789999999999776 6665532 1 1337999999999999999999999999999998754
Q ss_pred HHHHHhhhhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005480 300 FVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (694)
. +...++.+++.+. .....||||||+|.+. .. ..+.|+..++ +..+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~---~q~~LL~~le----~~~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KA---QQDALLPHVE----DGTITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HH---HHHHHHHHhh----cCcEEEEEe
Confidence 2 2344566666653 2356899999999982 22 2344555554 245677776
Q ss_pred cC--CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCC-----CCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005480 376 TN--RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-----KFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (694)
Q Consensus 376 TN--~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~-----~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa 448 (694)
|+ ....+++++++ |+ ..+.+++|+.++...+++..+... .+. +..+..++..+.| ..+.+.++++.+.
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 53 45588999999 77 678999999999999998876532 222 2235677777754 5667777777665
Q ss_pred HHHHHhCCcccCHHHHHHHHHHHH
Q 005480 449 ILAGRRGKAAISSKEIDDSIDRIV 472 (694)
Q Consensus 449 ~~A~~~~~~~It~~di~~Ai~~v~ 472 (694)
.. ...|+.+++.+++....
T Consensus 202 ~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 202 LG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred Hc-----cCCCCHHHHHHHHhhhh
Confidence 43 45799999999987643
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.8e-15 Score=170.38 Aligned_cols=206 Identities=17% Similarity=0.291 Sum_probs=144.8
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~------------ 290 (694)
++.++.+|+|++|++++++.|...+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 466788999999999998888776542 134667999999999999999999998765
Q ss_pred ------------CeeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHH
Q 005480 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (694)
Q Consensus 291 ------------pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 354 (694)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...+
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~ 134 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAF 134 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHH
Confidence 233333321 1223455666555432 234699999999982 2345
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCC
Q 005480 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (694)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~ 433 (694)
+.|+..++.. ...+++|++|+.++.+++++.+ |+ ..+.+.+|+..+...+++..+...++. ++..+..|+..+.
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 6777777743 3467888788788899999998 77 478999999999999998877544322 2233677888775
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 434 G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
| +.+++.+.+..+...+ + ..||.+++.+++.
T Consensus 210 G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 210 G-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred C-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 4 4555556665544322 2 3499999998874
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.1e-15 Score=174.28 Aligned_cols=211 Identities=17% Similarity=0.228 Sum_probs=149.9
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (694)
.+++++.+|+||+|++.+++.|.+.+..- +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 45677889999999999999998887632 345679999999999999999999998761
Q ss_pred --eeee-ehhhHHH----HH------hhhhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCChhHHHHH
Q 005480 292 --FFSI-SGSEFVE----MF------VGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (694)
Q Consensus 292 --fi~v-s~s~~~~----~~------~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 354 (694)
.-.+ +|..+.. .+ ...+...+|++.+.+. .....|+||||+|.+. ....
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~Aa 141 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHAF 141 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHHH
Confidence 1111 1111110 00 0123455677766653 2345799999999992 2467
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCcc-ccHHHHHHhCC
Q 005480 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTP 433 (694)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~ 433 (694)
|.||+.|+. ...+++||.+||.++.|.+.+++ |+ .++.|..++.++..+.++..+...++..+ ..+..|+..+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 889998885 45678999999999999999999 76 57899999999988888877655444322 23667788777
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 434 G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
| +.++..+++..+... +...|+.+++.+.
T Consensus 217 G-s~RdALsLLdQaia~----~~~~It~~~V~~~ 245 (700)
T PRK12323 217 G-SMRDALSLTDQAIAY----SAGNVSEEAVRGM 245 (700)
T ss_pred C-CHHHHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 5 678888888776642 2335666655543
No 66
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=3.2e-15 Score=167.49 Aligned_cols=245 Identities=16% Similarity=0.242 Sum_probs=160.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehh
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s 298 (694)
-.+..||++.+-.+........+.....+|.. ..+++||||||+|||+|++++++++ +..+++++++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 34678999988444443333333333333321 3469999999999999999999975 4678999999
Q ss_pred hHHHHHhhhhh-HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 299 EFVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 299 ~~~~~~~G~~~-~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
+|...+..... ..+. -|.......+.+|+|||++.+.++. ..+..+..++..+ ......+|+++.+
T Consensus 170 ~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~l---~~~~k~iIitsd~ 236 (440)
T PRK14088 170 KFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNEL---HDSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHHH---HHcCCeEEEECCC
Confidence 98876543321 1222 2333333467899999999984321 1122222223222 2233456666666
Q ss_pred Cccc---cchhhcCCCccc--eeeeccCCCHHHHHHHHHHhhcCC--CCCccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005480 378 RADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNK--KFDADVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (694)
Q Consensus 378 ~p~~---LD~aLlRpgRfd--r~I~i~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~ 450 (694)
.|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+... .+++++ ++.|+....| +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6664 5567887 775 478999999999999999887643 344443 7778887764 689999999988777
Q ss_pred HHHhCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhh
Q 005480 451 AGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (694)
Q Consensus 451 A~~~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~~~ 502 (694)
+...+ ..||.+.+.+++..+.... ..+..+..+++-.+|+..+
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~~~~--------~~~~~i~~~~I~~~V~~~~ 355 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFIKPN--------RVKAMDPIDELIEIVAKVT 355 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHhccc--------cccCCCCHHHHHHHHHHHc
Confidence 76665 4699999999988764221 1122356677777776643
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.5e-15 Score=162.59 Aligned_cols=213 Identities=23% Similarity=0.276 Sum_probs=149.0
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee-------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------- 294 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~------- 294 (694)
.++.++.+|+||+|++.+++.+.+.+.. .+.|+.+||+||||+|||++|+++|+++.+..-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567788999999999999998877752 1345678999999999999999999988643211
Q ss_pred -eehhhHHHH-----H-----hhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHh
Q 005480 295 -ISGSEFVEM-----F-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (694)
Q Consensus 295 -vs~s~~~~~-----~-----~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~ 359 (694)
.+|.++... + .......++++.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLLk 141 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALLK 141 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHHH
Confidence 012222110 0 01223446666665432 234699999999982 235567888
Q ss_pred hhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005480 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (694)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (694)
.++.. ...+.+|.+|+.++.+.+++.+ |+ ..+.+++|+.++..++++..+...+.. ++..+..++..+.| +++
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77753 4456777778888889999988 66 578999999999999998877665432 23346777877765 677
Q ss_pred HHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 439 DLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 439 dL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
++.++++.+... +...|+.+++.+++.
T Consensus 216 ~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 216 DALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 887887776543 456799988887763
No 68
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=7.7e-15 Score=158.01 Aligned_cols=214 Identities=20% Similarity=0.285 Sum_probs=140.6
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCee
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~-----~pfi 293 (694)
.+|.++..+.+|++++|.+++++.+.+.+.. + . ..++||+||||||||++|+++++++. .+++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS---P--------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 3577888899999999999999998887642 1 1 12699999999999999999999873 4578
Q ss_pred eeehhhHHHHH-------------hhh-------hhHHHHHHHHHHHh-----cCCeEEEEccccccccccCCCCCCCCh
Q 005480 294 SISGSEFVEMF-------------VGV-------GASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (694)
Q Consensus 294 ~vs~s~~~~~~-------------~G~-------~~~~vr~lF~~A~~-----~aP~ILfIDEID~l~~~r~~~~~~~~~ 348 (694)
+++++++.... .+. ....++.+.+.... ..+.+|+|||+|.+. .
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~ 139 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------E 139 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------H
Confidence 88888764321 011 11223333333322 234699999999882 2
Q ss_pred hHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHH
Q 005480 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDV 427 (694)
Q Consensus 349 e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~ 427 (694)
..++. |+..++.... ...+|.+++.+..+.+.+.+ |+ ..+.+.+|+.++..++++..+.+.++. ++..+..
T Consensus 140 ~~~~~---L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 140 DAQQA---LRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred HHHHH---HHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23333 4444443322 23455566666677778877 55 468999999999999999887665543 2334677
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 428 lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
++..+. +|++.+++.....+. +...||.+++.+++.
T Consensus 212 l~~~~~----gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 212 IAYYAG----GDLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHcC----CCHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 777764 344555555544442 234799999887654
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3e-15 Score=172.54 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=149.1
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee--ee---
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF--SI--- 295 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi--~v--- 295 (694)
..+++++.+|+||+|++++++.|.+.++. .+.++.+||+||+|||||++|+++|+.+++.-- ..
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 34577888999999999999998887652 234667899999999999999999998865210 01
Q ss_pred ---ehhhHHH----------HHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 296 ---SGSEFVE----------MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 296 ---s~s~~~~----------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
+|..+.+ .....+...++++++.+.. ....|+||||+|.|. ....|.||
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NALL 140 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAML 140 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHHH
Confidence 1111110 0011233456777776542 234799999999992 23577888
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (694)
+.|+.. ..+++||.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+...++. ++..+..|++.+.| +.
T Consensus 141 KtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-sm 214 (830)
T PRK07003 141 KTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SM 214 (830)
T ss_pred HHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888743 4578899999999999999999 66 578999999999998888877655443 33347788888876 46
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDD 466 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~ 466 (694)
++..+++..+..+. ...|+.+++..
T Consensus 215 RdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 215 RDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 78878877766433 23466555543
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.9e-15 Score=170.05 Aligned_cols=206 Identities=18% Similarity=0.274 Sum_probs=149.6
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (694)
.++.++.+|+||+|++.+++.|...+.. .+.++.+||+||||||||++|+++|+.+++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 3466788999999999999999887752 2446689999999999999999999998752
Q ss_pred --------------eeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHH
Q 005480 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (694)
Q Consensus 292 --------------fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (694)
++.+++++ ..+...+|++.+.+.. ....|++|||+|.+- ...
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THS 134 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHH
Confidence 22222211 1234456676665532 345799999999982 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhC
Q 005480 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (694)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (694)
.+.|++.++.. ..++.+|.+|+.+..+.+.+++ |+ .++.+..++.++..+.++..+.+.++. .+..+..|+..+
T Consensus 135 ~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 135 FNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67788877743 4567788888888888888887 66 578999999999998888877665443 233467788877
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
.| +.+++.+++..+... +...|+.+++...+
T Consensus 210 ~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 210 QG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 65 678888888776543 45678888887654
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=1.2e-14 Score=160.34 Aligned_cols=223 Identities=21% Similarity=0.255 Sum_probs=153.2
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehhhHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV 301 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s~~~ 301 (694)
....+.++|.++..+++...+...... ..|.+++|+||||||||++++.+++++ ++++++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 345678999999999888877542211 224579999999999999999999876 5789999886432
Q ss_pred ----------HHHhhh-------h-hHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc
Q 005480 302 ----------EMFVGV-------G-ASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (694)
Q Consensus 302 ----------~~~~G~-------~-~~~vr~lF~~A~~-~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (694)
..+.+. . ...+..+++.... ..+.||+|||+|.+.... ..+.+..|+..++
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhh
Confidence 111110 1 1122333333332 456899999999995211 1235666766665
Q ss_pred CccCCCCeEEEEecCCc---cccchhhcCCCccc-eeeeccCCCHHHHHHHHHHhhcCC----CCCccccHHHHHHhCCC
Q 005480 363 GFEGNTGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIAMRTPG 434 (694)
Q Consensus 363 ~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfd-r~I~i~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~lA~~t~G 434 (694)
... ..++.+|+++|.. +.+++.+.+ ||. ..|.+++++.++..+|++.++... .+ .+..++.+++.+.+
T Consensus 168 ~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~-~~~~l~~i~~~~~~ 243 (394)
T PRK00411 168 EYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV-DDEVLDLIADLTAR 243 (394)
T ss_pred ccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC-CHhHHHHHHHHHHH
Confidence 443 2368888888865 356777766 553 478999999999999999887532 12 22235666666633
Q ss_pred C--cHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 005480 435 F--SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (694)
Q Consensus 435 ~--sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v 471 (694)
. ..+.+.++|..|+..|..++...|+.+|+.+|++++
T Consensus 244 ~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 244 EHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2 245566889999999999999999999999999987
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.3e-15 Score=166.74 Aligned_cols=216 Identities=19% Similarity=0.290 Sum_probs=156.8
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------- 293 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi------- 293 (694)
..++.++.+|+|++|++.+++.|...+.. .+.|.++||+||||||||++|+++|+.+++.-.
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 44567888999999999999988876642 234668999999999999999999999865321
Q ss_pred ----e-eehhhHHHH----------HhhhhhHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCChhHHHHH
Q 005480 294 ----S-ISGSEFVEM----------FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (694)
Q Consensus 294 ----~-vs~s~~~~~----------~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 354 (694)
. -+|..+.+. -...+...++++++.+... ...|++|||+|.+. ...+
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~ 145 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAF 145 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHH
Confidence 0 112222211 0112445678888777432 34699999999982 2457
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCC
Q 005480 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (694)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~ 433 (694)
+.|+..++. ....+++|.+|+.++.+.+++.+ |+ ..+++..++.++...+++..+...+.. ++..+..|+..+.
T Consensus 146 naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778887774 45577888888888999999988 66 468899999999999999888765543 2233677888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 434 G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
| +.+++.++++.+..++... ...||.+++.+.+
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 6 7899999998887665322 2368888877654
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.7e-15 Score=169.34 Aligned_cols=207 Identities=16% Similarity=0.241 Sum_probs=149.2
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (694)
..+++++.+|+||+|++.+++.|.+.+..- +.|..+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 346778889999999999999999888532 345579999999999999999999988653
Q ss_pred ---------------eeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHH
Q 005480 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (694)
Q Consensus 292 ---------------fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (694)
++.++.+ ...+...+|++.+.+.. ....|++|||+|.+. ..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~ 134 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GH 134 (509)
T ss_pred CCHHHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HH
Confidence 2233221 12234456777665532 334699999999992 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHh
Q 005480 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (694)
Q Consensus 353 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~ 431 (694)
.+|.||+.|+.. ..++++|.+|+.+..+.+.+++ |. ..+++..++..+....++..+.+.++. .+..+..++..
T Consensus 135 a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 135 SFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567888888853 4567788888888888888888 65 467888888888877777776655443 23346778877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+.| +.+++.+++..+..+ +...||.+++.+.+
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 764 788888888877543 34567877776543
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=5.9e-15 Score=176.79 Aligned_cols=218 Identities=21% Similarity=0.294 Sum_probs=150.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeee
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (694)
..+-++++++|+++....+.+++. ... ..+++|+||||||||++|+.+|... +..++.
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~---r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL---RRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh---cCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 356689999999997555544432 221 2279999999999999999999875 245777
Q ss_pred eehhhHHH--HHhhhhhHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeE
Q 005480 295 ISGSEFVE--MFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (694)
Q Consensus 295 vs~s~~~~--~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (694)
++.+.+.. .+.|+.+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ ..+.|+..+ .+..+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l----~~G~l~ 318 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPAL----ARGELR 318 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHh----hCCCeE
Confidence 88877663 5788899999999999865 468999999999997654321 1111 223333333 267799
Q ss_pred EEEecCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC----CC-ccccHHHHHHhCCCCc-----
Q 005480 372 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FD-ADVSLDVIAMRTPGFS----- 436 (694)
Q Consensus 372 VIaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~----l~-~dvdl~~lA~~t~G~s----- 436 (694)
+|+||+..+ .+|+||.| ||. .|.++.|+.+++.+||+.+.+... +. .+..+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 999998754 48999999 995 899999999999999866554322 11 2334666777766553
Q ss_pred HHHHHHHHHHHHHHHHHh-CCcccCHHHHHHH
Q 005480 437 GADLANLLNEAAILAGRR-GKAAISSKEIDDS 467 (694)
Q Consensus 437 gadL~~lv~eAa~~A~~~-~~~~It~~di~~A 467 (694)
|.-.-.++.+|+.....+ ....+..+++++.
T Consensus 396 PDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred ccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 344557888887665443 3334444444433
No 75
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.4e-14 Score=165.39 Aligned_cols=244 Identities=19% Similarity=0.263 Sum_probs=157.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehhh
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s~ 299 (694)
.+..+|++++.-+........+.....++. .....++|||++|+|||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 456799999854443322222222222221 112359999999999999999999976 57889999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 300 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
|.+.+.........+.|.... ..+++|+||||+.+..+ +..+..+..+++.+. .+.+.+||++...|
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~---e~gk~IIITSd~~P 421 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLH---NANKQIVLSSDRPP 421 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC---------HHHHHHHHHHHHHHH---hcCCCEEEecCCCh
Confidence 987765543332233344332 24689999999998432 222333333444332 22333455433334
Q ss_pred c---ccchhhcCCCccce--eeeccCCCHHHHHHHHHHhhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005480 380 D---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (694)
Q Consensus 380 ~---~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A~~ 453 (694)
. .+++.|.+ ||.. .+.|..||.+.|.+||+.++....+.-+ .-++.|+.+.. -+.++|+.+++.....+..
T Consensus 422 ~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 422 KQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASL 498 (617)
T ss_pred HhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Confidence 3 57788998 8865 7799999999999999998876655422 22667777766 4689999999988777766
Q ss_pred hCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHh
Q 005480 454 RGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGT 501 (694)
Q Consensus 454 ~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~~ 501 (694)
.+ ..||.+.+++++..++... .+..+...++-++|+..
T Consensus 499 ~~-~~itl~la~~vL~~~~~~~---------~~~~it~d~I~~~Va~~ 536 (617)
T PRK14086 499 NR-QPVDLGLTEIVLRDLIPED---------SAPEITAAAIMAATADY 536 (617)
T ss_pred hC-CCCCHHHHHHHHHHhhccc---------cCCcCCHHHHHHHHHHH
Confidence 55 5699999998887654321 12234445556666554
No 76
>PRK06893 DNA replication initiation factor; Validated
Probab=99.63 E-value=2.2e-14 Score=147.43 Aligned_cols=211 Identities=12% Similarity=0.106 Sum_probs=134.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
..+..+|++++|.+... .+..+...... .....++||||||||||+|++++|+++ +....+++..+.
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNFID---------LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHhhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 45567999999876532 11212211111 111258999999999999999999886 456666666432
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
... ...+++... ...+|+|||++.+.. ....+..+..+++.+.. .+..+++++++..|.
T Consensus 79 ~~~--------~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~--~~~~illits~~~p~ 137 (229)
T PRK06893 79 QYF--------SPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE--QGKTLLLISADCSPH 137 (229)
T ss_pred hhh--------hHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChH
Confidence 111 112333332 347999999999842 22334445555554321 122345566666677
Q ss_pred ccc---hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005480 381 ILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (694)
Q Consensus 381 ~LD---~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~ 455 (694)
.++ +.+.++.++...+.++.||.++|.+|++.++.... ++++ -++.|+.+.+| +.+.+.++++.....+..++
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~-v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~ 215 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDE-VANFLLKRLDR-DMHTLFDALDLLDKASLQAQ 215 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC
Confidence 665 88888555567899999999999999998875444 3333 36778888774 67888888887654333334
Q ss_pred CcccCHHHHHHHH
Q 005480 456 KAAISSKEIDDSI 468 (694)
Q Consensus 456 ~~~It~~di~~Ai 468 (694)
..||...+++++
T Consensus 216 -~~it~~~v~~~L 227 (229)
T PRK06893 216 -RKLTIPFVKEIL 227 (229)
T ss_pred -CCCCHHHHHHHh
Confidence 469988888765
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.62 E-value=8.9e-15 Score=156.69 Aligned_cols=208 Identities=21% Similarity=0.321 Sum_probs=136.3
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s 298 (694)
..+.++.++.+|+|++|.+++++.+...+.. ...|..+||+||||+|||++|++++++.+.+++.++++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 4577889999999999999999988887752 23456677899999999999999999999999999987
Q ss_pred hHHHHHhhhhhHHHHHHHHHHH-hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 299 EFVEMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 299 ~~~~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
+ . . .......+........ ...+.+|+|||+|.+. ....+..+..+ ++.. ..++.+|.+||
T Consensus 78 ~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~---le~~--~~~~~~Ilt~n 139 (316)
T PHA02544 78 D-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSF---MEAY--SKNCSFIITAN 139 (316)
T ss_pred c-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHH---HHhc--CCCceEEEEcC
Confidence 6 1 1 1111111222111111 1356899999999872 12233344444 4432 34567888999
Q ss_pred CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcC---------CCCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005480 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN---------KKFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (694)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~---------~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa 448 (694)
.++.+++++++ ||. .+.++.|+.+++.++++.+... ..+.++ .+..++.... .|++.+++...
T Consensus 140 ~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~----~d~r~~l~~l~ 211 (316)
T PHA02544 140 NKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNF----PDFRRTINELQ 211 (316)
T ss_pred ChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcC----CCHHHHHHHHH
Confidence 99999999998 884 7899999999998877654321 222222 2455555443 24555555444
Q ss_pred HHHHHhCCcccCHHHHHH
Q 005480 449 ILAGRRGKAAISSKEIDD 466 (694)
Q Consensus 449 ~~A~~~~~~~It~~di~~ 466 (694)
..+. ...++.+++..
T Consensus 212 ~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 212 RYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHc---cCCCCHHHHHH
Confidence 4332 23566655443
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.4e-14 Score=169.91 Aligned_cols=209 Identities=18% Similarity=0.220 Sum_probs=145.3
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------ee
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS 294 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-------i~ 294 (694)
.++.++.+|+||+|++.+++.|++.+..- ++|+.+||+||||||||++|+++|+.+++.- ..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 35677889999999999999988777522 3466789999999999999999999987641 11
Q ss_pred e-ehhhHHHH-------Hh---hhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHh
Q 005480 295 I-SGSEFVEM-------FV---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (694)
Q Consensus 295 v-s~s~~~~~-------~~---G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~ 359 (694)
+ +|-.+.+. +. ..+...+|.+.+.+.. ....|+||||+|.+ ....+|.||+
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L--------------T~eAqNALLK 141 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML--------------SRSSFNALLK 141 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc--------------CHHHHHHHHH
Confidence 1 11111110 00 1123446666655432 33469999999999 2347788888
Q ss_pred hhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005480 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (694)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (694)
.|+. ...++++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+....+. .+..+..|+..+.| +.+
T Consensus 142 tLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8885 34567788888888889999998 66 578999999999998888877654332 22336778888776 578
Q ss_pred HHHHHHHHHHHHHHHhCCcccCHHHHH
Q 005480 439 DLANLLNEAAILAGRRGKAAISSKEID 465 (694)
Q Consensus 439 dL~~lv~eAa~~A~~~~~~~It~~di~ 465 (694)
++.+++..+... +...++.+.+.
T Consensus 216 ~ALnLLdQala~----~~~~It~~~V~ 238 (944)
T PRK14949 216 DALSLTDQAIAF----GGGQVMLTQVQ 238 (944)
T ss_pred HHHHHHHHHHHh----cCCcccHHHHH
Confidence 888888877632 23345555443
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1e-14 Score=167.96 Aligned_cols=213 Identities=18% Similarity=0.251 Sum_probs=151.9
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee--eee---
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF--SIS--- 296 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi--~vs--- 296 (694)
.++.++.+|+||+|++.+++.|.+.+.. .+.++++||+||+|+|||++|+++|+.++++-. ...
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 4567888999999999999999888763 245678999999999999999999998765321 011
Q ss_pred ---hhhHHHH----------HhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHh
Q 005480 297 ---GSEFVEM----------FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (694)
Q Consensus 297 ---~s~~~~~----------~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~ 359 (694)
|..+... -...+...++++++.+.. ....||||||+|.+. ...++.||+
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLK 141 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLK 141 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHH
Confidence 1111100 012234567777776532 234699999999882 235678888
Q ss_pred hhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005480 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (694)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (694)
.|+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++. .+..+..|+..+. .+.+
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslR 215 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMR 215 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHH
Confidence 88753 4567788888888899988887 66 467888999999999998888765543 2233677888776 4688
Q ss_pred HHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 439 DLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 439 dL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
++.++++.+..+ +...|+.+++...+.
T Consensus 216 dAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 216 DALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 888998877654 345688877776643
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.3e-14 Score=167.66 Aligned_cols=211 Identities=18% Similarity=0.272 Sum_probs=148.0
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee--eee----
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF--SIS---- 296 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi--~vs---- 296 (694)
++.++.+|+||+|++.+++.|.+.+..- +.++.+||+||+|+|||++|+++|+.+++... ...
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 4567789999999999999888877632 34557899999999999999999998876311 001
Q ss_pred --hhhHHH-----H--Hh---hhhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh
Q 005480 297 --GSEFVE-----M--FV---GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (694)
Q Consensus 297 --~s~~~~-----~--~~---G~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (694)
|..+.. . +. ..+...+|++.+.+. .+...|+||||+|.+ ....+|.||+.
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L--------------s~~a~NALLKt 142 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML--------------SRHSFNALLKT 142 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC--------------CHHHHHHHHHH
Confidence 111110 0 00 112345666665543 234569999999999 23467888888
Q ss_pred hcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHH
Q 005480 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGAD 439 (694)
Q Consensus 361 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgad 439 (694)
|+. ...++++|.+|+.++.|.+.+++ |+ ..+.|..++.++....|+..+...++. .+..+..|+..+.| +.++
T Consensus 143 LEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~ 216 (647)
T PRK07994 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRD 216 (647)
T ss_pred HHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 45567888888889999999998 75 678999999999998888877554433 23346778888775 5778
Q ss_pred HHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 440 LANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 440 L~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
..+++..|... +...|+.+++...+
T Consensus 217 Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 217 ALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 88888766533 33456666665543
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.60 E-value=1.1e-14 Score=153.34 Aligned_cols=206 Identities=28% Similarity=0.460 Sum_probs=139.5
Q ss_pred CCCCCCccccccchHHHHH---HHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eeeeeh
Q 005480 224 PNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISG 297 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~---L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---fi~vs~ 297 (694)
..++.+++|.+|+++...+ |+.+++.-+ +| .++|+||||||||+||+.|+....-+ |+.++.
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq~~-----------ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQNR-----------IP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHcCC-----------CC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 3456689999999988765 233333222 22 59999999999999999999988766 777766
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHh-----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEE
Q 005480 298 SEFVEMFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (694)
Q Consensus 298 s~~~~~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (694)
.. .....+|++|+++++ ....|||||||+.+-+ ..+.+ ||-..+ +..|++
T Consensus 199 t~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk-----------sQQD~---fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 199 TN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK-----------SQQDT---FLPHVE----NGDITL 253 (554)
T ss_pred cc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-----------hhhhc---ccceec----cCceEE
Confidence 32 345678999999975 3458999999999832 22222 343333 677999
Q ss_pred EEec--CCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc---C--C---CCC------ccccHHHHHHhCCCCc
Q 005480 373 IAAT--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS---N--K---KFD------ADVSLDVIAMRTPGFS 436 (694)
Q Consensus 373 IaaT--N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~---~--~---~l~------~dvdl~~lA~~t~G~s 436 (694)
|++| |..-.|..+|++++ +++.+.....+....||.+-.. + . ++. .+--++.++..++|-.
T Consensus 254 IGATTENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9988 45568899999944 4577888888888888876322 1 1 111 1222677888888876
Q ss_pred HHHHHHHHHHH-HHHHHHhC---CcccCHHHHHHHHHH
Q 005480 437 GADLANLLNEA-AILAGRRG---KAAISSKEIDDSIDR 470 (694)
Q Consensus 437 gadL~~lv~eA-a~~A~~~~---~~~It~~di~~Ai~~ 470 (694)
.+.|.. ++.+ .+...+.| +..++.+|+.+++.+
T Consensus 331 R~aLN~-Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 331 RAALNA-LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHH-HHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 655533 3333 23333434 457888999888865
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=99.60 E-value=2.3e-14 Score=154.31 Aligned_cols=204 Identities=21% Similarity=0.226 Sum_probs=134.8
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----Ceeee
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSI 295 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~-----pfi~v 295 (694)
+.++.++.+|+|++|++++++.|+.++..- ..| ++||+||||||||++|+++|+++.. .++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-----------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG-----------NMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 557788999999999999999888765421 123 5999999999999999999999732 35556
Q ss_pred ehhhHHHHHhhhhhHHHHHHHHHHH-------hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCC
Q 005480 296 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (694)
Q Consensus 296 s~s~~~~~~~G~~~~~vr~lF~~A~-------~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (694)
+.++... ...+++..+... ...+.|++|||+|.+. ...+ +.|+..|+.+. .
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq---~aL~~~lE~~~--~ 128 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQ---QALRRTMEIYS--N 128 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHH---HHHHHHHhccc--C
Confidence 6554321 122333332211 1235799999999982 2233 44455555432 3
Q ss_pred CeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005480 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (694)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (694)
...+|.+||.++.+.+++++ |. ..+.++.|+.++....++..+.+.++. ++..+..++..+.| |++.+++..
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~L 201 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNL 201 (319)
T ss_pred CceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 34566778888888899998 65 478999999999999998877654432 23346777776653 444444444
Q ss_pred HHHHHHhCCcccCHHHHHHH
Q 005480 448 AILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 448 a~~A~~~~~~~It~~di~~A 467 (694)
...+ .+...|+.+++.+.
T Consensus 202 q~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 202 QATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHH--hcCCCCCHHHHHHH
Confidence 3222 23456887776543
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.1e-14 Score=161.45 Aligned_cols=205 Identities=21% Similarity=0.306 Sum_probs=151.6
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~------------ 290 (694)
.++++.+|+||+|++.+++.|.+.+.. .+.|+++||+||||+|||++|+.+|..+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 356778999999999999988876642 245678999999999999999999987643
Q ss_pred ------------CeeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHH
Q 005480 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (694)
Q Consensus 291 ------------pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 354 (694)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 223333321 1234567777777643 234699999999982 2467
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCC
Q 005480 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (694)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~ 433 (694)
|.||+.++.. ...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+.+.+.. ++..+..|+..+.
T Consensus 134 NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 134 NALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS 208 (491)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 8888888853 4567888888888899999998 66 468999999999988888877665443 2334777888886
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 434 G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
| +.+++.++++.+..++ ...||.+++.+.+
T Consensus 209 G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred C-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 5 7888888888877654 2468888887654
No 84
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.60 E-value=3.9e-14 Score=144.04 Aligned_cols=204 Identities=16% Similarity=0.203 Sum_probs=135.2
Q ss_pred CCCCcccccc--chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 226 TGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 226 ~~~~f~dv~G--~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
...+|+++++ ...+.+.+++.+. ...+.+++|+||||||||++|++++.++ +.++++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3467888873 4445555555432 1235589999999999999999998876 578999999887
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
.... .+++.... .+.+|+|||+|.+.. ..+..+.+..++..+.. ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCeEEEECCCChH
Confidence 6432 23333332 235899999999832 11223444445444322 22334444444444
Q ss_pred ccc---hhhcCCCcc--ceeeeccCCCHHHHHHHHHHhhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005480 381 ILD---SALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (694)
Q Consensus 381 ~LD---~aLlRpgRf--dr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~ 453 (694)
.++ +.+.+ |+ ..++.+++|+.+++..+++.++.+.. +.++ .+..|+..++ -+.+++.++++++...+..
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE-VADYLLRHGS-RDMGSLMALLDALDRASLA 211 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcc-CCHHHHHHHHHHHHHHHHH
Confidence 432 66776 65 46899999999999999998765433 3333 3677888654 5789999999998876655
Q ss_pred hCCcccCHHHHHHHH
Q 005480 454 RGKAAISSKEIDDSI 468 (694)
Q Consensus 454 ~~~~~It~~di~~Ai 468 (694)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 44 579988887764
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=6.8e-14 Score=167.97 Aligned_cols=163 Identities=24% Similarity=0.356 Sum_probs=126.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeee
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~v 295 (694)
..-.++.++|.++..+.+.+++.. +.+.+++|+||||||||++|+++|.+. +.+++.+
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345689999999999888777642 234479999999999999999999976 4789999
Q ss_pred ehhhHH--HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEE
Q 005480 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (694)
Q Consensus 296 s~s~~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (694)
+.+.+. ..|.|+.+.+++.+|+.++...++||||||||.+.+.++.. +.... .+.|...+ .+..+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~---a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDA---ANILKPAL----ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccH---HHHhHHHH----hCCCcEEE
Confidence 998887 46788899999999999988889999999999997654321 11112 22222222 25679999
Q ss_pred EecCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHh
Q 005480 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (694)
Q Consensus 374 aaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~ 413 (694)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 9999754 47899999 996 5799999999998888753
No 86
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=8.4e-15 Score=175.87 Aligned_cols=167 Identities=22% Similarity=0.353 Sum_probs=127.3
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeee
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (694)
..+-++++++|.++....+.+++.. .. ..+++|+||||||||++|+++|..+ +.+++.
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r---~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR---RT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc---CC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 3456899999999865555544432 21 2269999999999999999999987 788999
Q ss_pred eehhhHH--HHHhhhhhHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeE
Q 005480 295 ISGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (694)
Q Consensus 295 vs~s~~~--~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (694)
++.+.+. .++.|..+.+++.+|+.+.. ..|+||||||+|.+.+.+.. .++. ..... |... -.+..+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~~-d~~~~---lkp~----l~~g~l~ 309 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAM-DAGNM---LKPA----LARGELH 309 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccch-hHHHH---hcch----hhcCCCe
Confidence 9888876 45788899999999998644 57899999999999765432 1112 22222 2222 2367899
Q ss_pred EEEecCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcC
Q 005480 372 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (694)
Q Consensus 372 VIaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~ 416 (694)
+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+...
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999999876 48999999 997 5889999999999999876544
No 87
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.9e-15 Score=168.61 Aligned_cols=174 Identities=24% Similarity=0.415 Sum_probs=132.3
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHH--hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeeh
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~--l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~ 297 (694)
+.......+--+|-.|++++|+++.|.+.- |+..- ..+-++|+||||+|||+++++||..+|..|+.+|.
T Consensus 400 ~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~--------qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 400 LDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV--------QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSV 471 (906)
T ss_pred hhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC--------CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEec
Confidence 333334445568999999999999997765 44332 23458999999999999999999999999999987
Q ss_pred hhHHH---------HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC--
Q 005480 298 SEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-- 366 (694)
Q Consensus 298 s~~~~---------~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-- 366 (694)
..+.+ .|+|....++-+.++..+-..| +++|||||.+|+.-. |+ -...||+.||.-++
T Consensus 472 GG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q-----GD-----PasALLElLDPEQNan 540 (906)
T KOG2004|consen 472 GGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ-----GD-----PASALLELLDPEQNAN 540 (906)
T ss_pred cccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC-----CC-----hHHHHHHhcChhhccc
Confidence 65432 5889988888888888877777 666899999973111 11 12334444442111
Q ss_pred -----------CCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc
Q 005480 367 -----------NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 367 -----------~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
-..|+||||.|..+.|+++|+. |+. .|+++-+..++..+|.+.|+-
T Consensus 541 FlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 541 FLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 1369999999999999999998 884 789999999999999998874
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.5e-14 Score=161.18 Aligned_cols=204 Identities=21% Similarity=0.312 Sum_probs=146.2
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p----------- 291 (694)
++.++.+|+||+|++.+++.|.+.+..- +.|+.+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 5677889999999999999998887642 345678999999999999999999988541
Q ss_pred ------------eeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHH
Q 005480 292 ------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (694)
Q Consensus 292 ------------fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~ 355 (694)
++.+++++ ..+...++++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 22222211 1223456666554432 346799999999872 24577
Q ss_pred HHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCC
Q 005480 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPG 434 (694)
Q Consensus 356 ~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G 434 (694)
.|+..++.. ..++++|.+||.++.+.+.+.+ |+ ..+.+..|+.++....++..+.+.++. ++..+..++..+.|
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888753 3467788888989999999988 65 368999999999999998887665543 22336777877765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 435 FSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 435 ~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+.+++.++++.+... ...||.+++.+.+
T Consensus 210 -dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 210 -AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred -CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 466777777665432 2368888877664
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.8e-14 Score=164.42 Aligned_cols=213 Identities=16% Similarity=0.215 Sum_probs=149.3
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--------
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------- 292 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-------- 292 (694)
..++.++.+|+||+|++.+++.|.+.+..- +.|..+||+||+|||||++|+++|+.+++.-
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 345677889999999999999988877633 3455789999999999999999999886510
Q ss_pred ----eee-ehhhHHH--------H--HhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHH
Q 005480 293 ----FSI-SGSEFVE--------M--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (694)
Q Consensus 293 ----i~v-s~s~~~~--------~--~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (694)
-.+ +|..+.. . ....+...+|++.+.+.. ....|++|||+|.+. ...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 000 1211111 0 001233467777776542 223699999999982 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhC
Q 005480 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (694)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (694)
+|.||+.++. ....+++|.+|+.+..+.+.+++ |. .++.+..++.++..+.++..+.+.++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7788888875 34567788888888888888888 65 578999999999888888877655443 223367788877
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
.| +.+++.+++..+... +...||.+++.+.+
T Consensus 216 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 75 678888888766644 34567777766543
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=4.1e-14 Score=153.70 Aligned_cols=208 Identities=22% Similarity=0.349 Sum_probs=148.5
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (694)
+.++.++.+|+|++|++++++.+.+.+.. .+.|+.+||+||||+|||++|+++|..+.++
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34566788999999999999998887752 2345679999999999999999999987543
Q ss_pred ---------------eeeeehhhHHHHHhhhhhHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCChhHHH
Q 005480 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (694)
Q Consensus 292 ---------------fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (694)
++.+++.+ ..+...++++++.+... ...||+|||+|.+. ..
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~ 132 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KS 132 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HH
Confidence 12222210 11334567777766432 23599999999982 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHh
Q 005480 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (694)
Q Consensus 353 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~ 431 (694)
.++.|+..++.. ..++++|.+|+.++.+.+++.+ |+ ..+++++|+.++..++++.++.+.+.. ++..+..++..
T Consensus 133 ~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567788887753 3467777788888988899988 76 478999999999999999888765543 22335667777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
+.| +++.+.+.++.+...+ ...||.+++++++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 754 5677777776666543 24599999987764
No 91
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=8.1e-14 Score=156.14 Aligned_cols=229 Identities=17% Similarity=0.228 Sum_probs=143.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~ 301 (694)
.+..||++.+--+........+......+.. ......++++||||+|+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 4678999998333322221222222221110 001123479999999999999999999875 7899999998887
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc-
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD- 380 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~- 380 (694)
..+.......-...|.... ..+++|+||||+.+.++. ..++.+..+++.+. .....+|+++++.|.
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~---~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLH---TEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHH---HCCCcEEEecCCCHHH
Confidence 6554332211122344433 345799999999984321 22222323332221 123445555555554
Q ss_pred --ccchhhcCCCccc--eeeeccCCCHHHHHHHHHHhhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHH---HHH
Q 005480 381 --ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAI---LAG 452 (694)
Q Consensus 381 --~LD~aLlRpgRfd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eAa~---~A~ 452 (694)
.+++.+.+ ||. ..+.+++|+.++|..|++..+...++.- +..++.++....+ +.++|.++++..+. .+.
T Consensus 249 l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 249 LKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 46788988 886 5889999999999999999887655432 2225667776663 57788888887753 232
Q ss_pred HhCCcccCHHHHHHHHHHHHc
Q 005480 453 RRGKAAISSKEIDDSIDRIVA 473 (694)
Q Consensus 453 ~~~~~~It~~di~~Ai~~v~~ 473 (694)
..+ ..||.+++++++.....
T Consensus 326 ~~~-~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 326 LSH-QLLYVDDIKALLHDVLE 345 (445)
T ss_pred hhC-CCCCHHHHHHHHHHhhh
Confidence 233 56999999999987543
No 92
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.1e-14 Score=162.73 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=150.5
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FSI 295 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-------i~v 295 (694)
.+.++.+|+||+|++.+++.|++.+..- +.++.+||+||+|||||++|+.+|+.+.++- -.+
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 5667889999999999999998887642 3456799999999999999999999875421 000
Q ss_pred -ehhhHHH----------HHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh
Q 005480 296 -SGSEFVE----------MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (694)
Q Consensus 296 -s~s~~~~----------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (694)
+|..+.+ .-.+.+...+|++.+.+.. ....|++|||+|.+. ...+|.||+.
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naLLKt 142 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNALLKT 142 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHHHH
Confidence 1111111 0012344567777777643 234699999999982 2367788888
Q ss_pred hcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHH
Q 005480 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGAD 439 (694)
Q Consensus 361 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgad 439 (694)
++. +..++++|.+|+.++.+.+.+++ |+. .+.|..|+..+....++..+.+.++. ++..+..++..+.| +.++
T Consensus 143 LEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~ 216 (559)
T PRK05563 143 LEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRD 216 (559)
T ss_pred hcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 875 34567888888889999999988 664 57899999999999898877665543 22336777887765 7788
Q ss_pred HHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 440 LANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 440 L~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+.+++..+...+ ...||.+++.+.+
T Consensus 217 al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 217 ALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 888888776542 3468877766543
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=3.8e-14 Score=156.30 Aligned_cols=191 Identities=19% Similarity=0.293 Sum_probs=130.9
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee-e------ehhhHH
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-I------SGSEFV 301 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~-v------s~s~~~ 301 (694)
.|++|+|++.+++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|..+.+.--. . +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999976332 2333556678899999999999999999999977543100 0 011110
Q ss_pred HH------H-----hhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC
Q 005480 302 EM------F-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (694)
Q Consensus 302 ~~------~-----~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~ 366 (694)
.. + ...+...+|++++.+.. ....|+||||+|.+. ....|.||+.|+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKAVEEP-- 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHHhhcC--
Confidence 00 0 11233457888887754 234699999999992 22457788888753
Q ss_pred CCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHH
Q 005480 367 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLL 444 (694)
Q Consensus 367 ~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv 444 (694)
..++++|.+|+.++.+.|++++ |+ ..+.|++|+.++..+++.... ... ......++..+.|..+..+.-+.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 3345555555558999999999 66 589999999998887776322 232 23366788888888776554443
No 94
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=2.5e-14 Score=160.55 Aligned_cols=297 Identities=15% Similarity=0.248 Sum_probs=183.8
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehhhHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV 301 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s~~~ 301 (694)
..+|++++--+.....+..+.....+|. ....+++|||++|+|||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4689998844433222222222233332 122469999999999999999999854 5788999999998
Q ss_pred HHHhhhhhH---HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 302 EMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 302 ~~~~G~~~~---~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
..+...... .+..+.+.. ..+.+|+|||++.+.. .+..+..+..+++.+. ...+.+|+++...
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~---------k~~~~e~lf~l~N~~~---~~~k~iIltsd~~ 249 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY---------KEKTNEIFFTIFNNFI---ENDKQLFFSSDKS 249 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCcEEEECCCC
Confidence 776543221 222222222 2457999999999842 2233334444444332 2333455544444
Q ss_pred cc---ccchhhcCCCccce--eeeccCCCHHHHHHHHHHhhcCCCC---CccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005480 379 AD---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKF---DADVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (694)
Q Consensus 379 p~---~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~Il~~~l~~~~l---~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~ 450 (694)
|+ .+++.|.+ ||.. .+.+..|+.++|.+|++.++...++ -++..+..|+....| +++.|.++++.+...
T Consensus 250 P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 250 PELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 54 35788888 8864 8889999999999999999876442 122236778887775 689999999999866
Q ss_pred HHHhC-CcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeccCC----CcCceEE
Q 005480 451 AGRRG-KAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG----QARGLTW 525 (694)
Q Consensus 451 A~~~~-~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~~~l~~~~~v~kvti~prg----~~~G~~~ 525 (694)
+.... ...||.+.+.+++..+... .+..+...++-++|+.++--....+ .--.|. .+.-..|
T Consensus 327 a~~~~~~~~it~~~v~~~l~~~~~~----------~~~~~t~~~I~~~Va~~~~i~~~dl---~s~~R~~~i~~~Rqiam 393 (450)
T PRK14087 327 SQQNPEEKIITIEIVSDLFRDIPTS----------KLGILNVKKIKEVVSEKYGISVNAI---DGKARSKSIVTARHIAM 393 (450)
T ss_pred HhcccCCCCCCHHHHHHHHhhcccc----------ccCCCCHHHHHHHHHHHcCCCHHHH---hCCCCCccccHHHHHHH
Confidence 65542 3679999999998764211 1112455666677766543221111 111111 1223344
Q ss_pred eecCCCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCccc
Q 005480 526 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTT 565 (694)
Q Consensus 526 ~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~ 565 (694)
|+-. ..+..| +.+|...+|||-.-.|+++...+..
T Consensus 394 yL~r-~~t~~s----l~~IG~~FggrdHsTV~~a~~ki~~ 428 (450)
T PRK14087 394 YLTK-EILNHT----LAQIGEEFGGRDHTTVINAERKIEK 428 (450)
T ss_pred HHHH-HHcCCC----HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4432 233345 7889999999999999988654433
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.58 E-value=7.2e-14 Score=164.19 Aligned_cols=211 Identities=23% Similarity=0.274 Sum_probs=141.8
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
.++.++.+|+|++|++........+...+... . ..+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~~--------~-~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD--------R-VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 34566789999999999886433333323221 1 2369999999999999999999999999999887531
Q ss_pred HHHhhhhhHHHHHHHHHHH-----hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 302 EMFVGVGASRVRDLFKKAK-----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~-----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
+...+++.++.+. .....+|||||||.+. ... .+.|+..++ +..+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~q---QdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQ---QDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHH---HHHHHHHhc----CceEEEEEec
Confidence 1122344444332 1345799999999982 222 234555444 3457787766
Q ss_pred C--CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcC---------CCCCccccHHHHHHhCCCCcHHHHHHHHH
Q 005480 377 N--RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN---------KKFDADVSLDVIAMRTPGFSGADLANLLN 445 (694)
Q Consensus 377 N--~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~---------~~l~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (694)
+ ....+++++++ |. ..+.+++++.+++..+++..+.. ..++++ .++.|+....| +.+++.++++
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln~Le 219 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLNALE 219 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHHHHH
Confidence 4 34578899998 54 46899999999999999987752 122222 36778887754 5788888888
Q ss_pred HHHHHHHHhC--CcccCHHHHHHHHHHH
Q 005480 446 EAAILAGRRG--KAAISSKEIDDSIDRI 471 (694)
Q Consensus 446 eAa~~A~~~~--~~~It~~di~~Ai~~v 471 (694)
.+...+...+ ...|+.+++++++.+.
T Consensus 220 ~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 220 LAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 7764432222 2247888888887663
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.58 E-value=7.9e-14 Score=142.59 Aligned_cols=202 Identities=15% Similarity=0.195 Sum_probs=133.8
Q ss_pred CCCCCCccccccc--hHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 005480 224 PNTGVTFDDVAGV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (694)
Q Consensus 224 ~~~~~~f~dv~G~--~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s 298 (694)
..++.+|+++.+. .++...+++... +...+.+++|+||+|||||+||+++++++ +.+++++++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456789997733 444444444433 12234589999999999999999998865 7789999998
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 299 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
++.+.+ .. .....+|+|||+|.+. ...+..+..++..+. .+...++|.+++.
T Consensus 80 ~~~~~~------------~~--~~~~~~liiDdi~~l~-----------~~~~~~L~~~~~~~~---~~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLAF------------DF--DPEAELYAVDDVERLD-----------DAQQIALFNLFNRVR---AHGQGALLVAGPA 131 (227)
T ss_pred HhHHHH------------hh--cccCCEEEEeChhhcC-----------chHHHHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 765321 11 1235689999999872 223344444444332 2334334444443
Q ss_pred -cc--ccchhhcCCCcc--ceeeeccCCCHHHHHHHHHHhhcCC--CCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005480 379 -AD--ILDSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNK--KFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 379 -p~--~LD~aLlRpgRf--dr~I~i~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (694)
|. .+.+.+.+ || ...+.+++|+.+++..+++.++... .++++ -+..++...+| +.+++.++++.....|
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 32 34566776 66 4689999999999888988766543 33333 36778886664 6889999999876666
Q ss_pred HHhCCcccCHHHHHHHHH
Q 005480 452 GRRGKAAISSKEIDDSID 469 (694)
Q Consensus 452 ~~~~~~~It~~di~~Ai~ 469 (694)
...+ ..||...+.+++.
T Consensus 208 ~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHhC-CCCCHHHHHHHHh
Confidence 4444 6899988888764
No 97
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-14 Score=165.11 Aligned_cols=176 Identities=27% Similarity=0.400 Sum_probs=133.7
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s 298 (694)
+........+--.|-.|++++|+++.|.+.-.+.... .+- .-++|+||||+|||+|+++||+.++.+|+.++..
T Consensus 311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~-----~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG 384 (782)
T COG0466 311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK-----LKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG 384 (782)
T ss_pred hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc-----CCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecC
Confidence 3333334445567899999999999997765332211 111 1488999999999999999999999999999976
Q ss_pred hHHH---------HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC---
Q 005480 299 EFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--- 366 (694)
Q Consensus 299 ~~~~---------~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~--- 366 (694)
...+ .|+|....++-+-..+|....| +++|||||.++..- +-.-...||+.+|--++
T Consensus 385 GvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~----------rGDPaSALLEVLDPEQN~~F 453 (782)
T COG0466 385 GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF----------RGDPASALLEVLDPEQNNTF 453 (782)
T ss_pred ccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC----------CCChHHHHHhhcCHhhcCch
Confidence 5543 5889999999888999988877 66689999995421 11223455655553211
Q ss_pred ----------CCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhh
Q 005480 367 ----------NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (694)
Q Consensus 367 ----------~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l 414 (694)
-.+|+||+|+|..+.++.+|+. |+. +|++.-+...+..+|.+.|+
T Consensus 454 ~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 454 SDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 1369999999999999999998 884 89999999999999999886
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.8e-14 Score=161.92 Aligned_cols=212 Identities=18% Similarity=0.245 Sum_probs=147.5
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------ee
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS 294 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-------i~ 294 (694)
.++.++.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++.. -.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3466778999999999999998887763 23456789999999999999999999886531 11
Q ss_pred e-ehhhHHH-----H-----HhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHh
Q 005480 295 I-SGSEFVE-----M-----FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (694)
Q Consensus 295 v-s~s~~~~-----~-----~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~ 359 (694)
+ +|..+.. . -...+...+|++.+.+.. ....|++|||+|.+. ....|.||+
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK 141 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLK 141 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHH
Confidence 1 1111100 0 001234557777776643 234699999999982 235778888
Q ss_pred hhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005480 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (694)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (694)
.++. ....+++|.+|+.++.+.+.+++ |. ..+.|..++.++..+.+...+.+.++. .+..+..++..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8885 34567788888888888888887 65 578999999999888887777554433 22335677777664 678
Q ss_pred HHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 439 DLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 439 dL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
++.++++.+... +...|+.+++.+.+
T Consensus 216 ~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 216 DALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888888877654 35567777766544
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.2e-14 Score=160.77 Aligned_cols=206 Identities=20% Similarity=0.269 Sum_probs=144.9
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (694)
.++.++.+|+||+|++.+++.|.+.+..- +.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 45678889999999999999988877532 234579999999999999999999988753
Q ss_pred --------------eeeeehhhHHHHHhhhhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCChhHHHH
Q 005480 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (694)
Q Consensus 292 --------------fi~vs~s~~~~~~~G~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (694)
++.+++.. ..+...++.+.+.+. .....||||||+|.+. ...
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a 135 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REA 135 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHH
Confidence 22222210 112233444433332 2345799999999992 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhC
Q 005480 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (694)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (694)
++.||..|+.. ...+++|.+||.++.+.+.+++ |+ ..+.|+.++.++...+|+..+....+. ++..+..++..+
T Consensus 136 ~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s 210 (624)
T PRK14959 136 FNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRA 210 (624)
T ss_pred HHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67788887753 3568888889888889888888 66 468899999999998888877654432 223367777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
.| +.+++.++++.+. ..+...|+.+++.+++
T Consensus 211 ~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 211 AG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred CC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 64 4566666666542 2355689999888776
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.9e-14 Score=159.72 Aligned_cols=212 Identities=18% Similarity=0.178 Sum_probs=146.6
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FSI 295 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-------i~v 295 (694)
++.++.+|+||+|++.+++.|...+.. .+.|+.+||+||+|||||++|+++|+.+++.- -.+
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 567788999999999999998888752 23566789999999999999999999876521 110
Q ss_pred -ehhhHHHH---------Hh---hhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 296 -SGSEFVEM---------FV---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 296 -s~s~~~~~---------~~---G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
+|-.+... +. ..+...+|++.+.+.. ....|++|||+|.+. ....|.||
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~NALL 139 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFNALL 139 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHHHHH
Confidence 11111100 00 1123455655544422 234699999999982 23678888
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (694)
+.|+. ...++++|.+|+.++.+.+.+++ |. .++.|..++.++..+.++..+.+.+.. ++..+..++..+. .+.
T Consensus 140 K~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-Gdl 213 (584)
T PRK14952 140 KIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSP 213 (584)
T ss_pred HHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 88884 45578888888888999999998 64 578999999999888888877765533 2223555666554 567
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+++.++++.+...+ +...||.+++.+.+
T Consensus 214 R~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 214 RDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 88888888765443 34567877776553
No 101
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=1.1e-13 Score=153.27 Aligned_cols=179 Identities=27% Similarity=0.362 Sum_probs=114.3
Q ss_pred cc-ccccchHHHHHHHHHHHH----hcCchhhhhhcCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-
Q 005480 230 FD-DVAGVDEAKQDFMEVVEF----LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE- 302 (694)
Q Consensus 230 f~-dv~G~~e~k~~L~e~v~~----l~~p~~~~~lg~~-~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~- 302 (694)
++ .|+|++++|+.+...+.. +........ ... ...++||+||||||||++|+++|..++.||+.++++.+.+
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDD-DVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhccccccc-ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 44 389999999999766532 211100000 111 2357999999999999999999999999999999988764
Q ss_pred HHhhhhhHH-HHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc-----------C
Q 005480 303 MFVGVGASR-VRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------G 366 (694)
Q Consensus 303 ~~~G~~~~~-vr~lF~~A----~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~ 366 (694)
.|+|..... +..+++.+ ....++||||||||.+..++.......+...+.+.+.||..|++-. .
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 566764433 34444432 2346789999999999766332111111112345566666666421 1
Q ss_pred CCCeEEEEecCCcc----------------------------------------------------ccchhhcCCCccce
Q 005480 367 NTGIIVIAATNRAD----------------------------------------------------ILDSALLRPGRFDR 394 (694)
Q Consensus 367 ~~~ViVIaaTN~p~----------------------------------------------------~LD~aLlRpgRfdr 394 (694)
....++|.|+|... .+.|+++ ||+|.
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~ 305 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPV 305 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCe
Confidence 12345555555400 0233443 48999
Q ss_pred eeeccCCCHHHHHHHHH
Q 005480 395 QVTVDVPDIRGRTEILK 411 (694)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~ 411 (694)
.+.+...+.+...+|+.
T Consensus 306 iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 306 VATLEELDEEALVRILT 322 (412)
T ss_pred eeecCCCCHHHHHHHHH
Confidence 99999999999988886
No 102
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=6.4e-14 Score=168.69 Aligned_cols=203 Identities=22% Similarity=0.320 Sum_probs=143.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeee
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (694)
..+-.++.++|.++....+.+++. .. ...+++|+||||||||++|+++|... +.+++.
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~---r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLS---RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHh---cC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 345578999999996555555443 21 12368999999999999999999875 678899
Q ss_pred eehhhHH--HHHhhhhhHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeE
Q 005480 295 ISGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (694)
Q Consensus 295 vs~s~~~--~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (694)
++.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+.+... +. ....+.|... ..+..+.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~---~d~~~~Lk~~----l~~g~i~ 304 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GA---MDAGNMLKPA----LARGELH 304 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---ch---hHHHHHhchh----hhcCceE
Confidence 9888876 46788889999999999865 458999999999997543221 11 1222333222 2366799
Q ss_pred EEEecCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCc-----cccHHHHHHhCCCC-----c
Q 005480 372 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-----DVSLDVIAMRTPGF-----S 436 (694)
Q Consensus 372 VIaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-----dvdl~~lA~~t~G~-----s 436 (694)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+........ +..+...+..+.+| -
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 999999764 47999999 996 589999999999999987755543322 22344555555444 2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005480 437 GADLANLLNEAAILAG 452 (694)
Q Consensus 437 gadL~~lv~eAa~~A~ 452 (694)
|.---.++++|+..+.
T Consensus 382 PdkAidlld~a~a~~~ 397 (852)
T TIGR03346 382 PDKAIDLIDEAAARIR 397 (852)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444567777776553
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.55 E-value=3.5e-13 Score=139.09 Aligned_cols=206 Identities=13% Similarity=0.141 Sum_probs=132.1
Q ss_pred CCCCCCccccc-c-chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 005480 224 PNTGVTFDDVA-G-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (694)
Q Consensus 224 ~~~~~~f~dv~-G-~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s 298 (694)
-.+..+|++.+ | ...+...+++... .+ .+..++||||||||||+|++++++++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 34566899988 4 3444444444332 11 12379999999999999999999865 4556777776
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCC-eEEEEecC
Q 005480 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG-IIVIAATN 377 (694)
Q Consensus 299 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~-ViVIaaTN 377 (694)
++... ..++++.... ..+|+|||++.+.. ....++.+..++..+- .+.+ .+++++++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeCCC
Confidence 54321 1122222222 25899999999832 2233344444443332 1233 35555556
Q ss_pred Cccc---cchhhcCCCccc--eeeeccCCCHHHHHHHHHHhhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005480 378 RADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (694)
Q Consensus 378 ~p~~---LD~aLlRpgRfd--r~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~ 450 (694)
.|.. +.|.|.+ |+. .++.+..|+.+++.++++.++.... +++++ ++.|+.+.+| +.+.+.++++.....
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~ 216 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRA 216 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 6665 5789998 886 5899999999999999988665443 33333 6778888774 678888888886433
Q ss_pred HHHhCCcccCHHHHHHHH
Q 005480 451 AGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 451 A~~~~~~~It~~di~~Ai 468 (694)
+. .....||...+++++
T Consensus 217 ~l-~~~~~it~~~~k~~l 233 (235)
T PRK08084 217 SI-TAQRKLTIPFVKEIL 233 (235)
T ss_pred HH-hcCCCCCHHHHHHHH
Confidence 33 334569988888775
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=8.6e-14 Score=165.36 Aligned_cols=212 Identities=19% Similarity=0.185 Sum_probs=145.7
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe-------eee
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FSI 295 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-------i~v 295 (694)
+++++.+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|++||+.+.|.- -.+
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 567788999999999999998887753 23455799999999999999999999986521 110
Q ss_pred -ehhhHHHH---------Hhh---hhhHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 296 -SGSEFVEM---------FVG---VGASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 296 -s~s~~~~~---------~~G---~~~~~vr~lF~~A----~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
+|..+... +.+ .+...+|++-+.+ ......|+||||+|.|. ....|.||
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~NaLL 141 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNALL 141 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHHHH
Confidence 11111100 000 1234455554433 23445799999999992 34677888
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (694)
+.|+.. ..+++||.+|+.++.|-+.|++ |. .++.|..++.++..++|+..+.+.++. .+..+..++....| +.
T Consensus 142 K~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dl 215 (824)
T PRK07764 142 KIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SV 215 (824)
T ss_pred HHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888853 4567888888888889999988 55 578999999999988888887655543 22235667776654 67
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+++.++++..... .+...||.+++...+
T Consensus 216 R~Al~eLEKLia~---~~~~~IT~e~V~all 243 (824)
T PRK07764 216 RDSLSVLDQLLAG---AGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHHhh---cCCCCCCHHHHHHHh
Confidence 7777777765532 234568887776543
No 105
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=157.55 Aligned_cols=205 Identities=20% Similarity=0.302 Sum_probs=142.9
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (694)
.++.++.+|+||+|++.+++.|...+..- +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34567789999999999999888777532 345579999999999999999999987641
Q ss_pred --------------eeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHH
Q 005480 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (694)
Q Consensus 292 --------------fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (694)
++.+++. ...+...++.+.+.+.. ....|++|||+|.+. ...
T Consensus 76 C~sC~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a 135 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQS 135 (546)
T ss_pred cHHHHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHH
Confidence 1112111 01123345666655532 335699999999982 236
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhC
Q 005480 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (694)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (694)
.+.||..|+. ....+++|.+|+.+..+.+.+++ |. ..+++..++.++....++..+.+.++. .+..+..++..+
T Consensus 136 ~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 136 FNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778888874 34567777777778888888888 66 678999999999888888776654433 233366777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
. .+.+++.++++.+.... + ..|+.+++.++
T Consensus 211 ~-GdlR~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 211 K-GSLRDALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred C-CCHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 5 46778888887766543 2 45777776654
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.1e-13 Score=151.63 Aligned_cols=214 Identities=20% Similarity=0.345 Sum_probs=144.6
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~ 300 (694)
+.++.++.+|+|++|++.+++.+.+.+.. ...|+++|||||||+|||++|+++|+....+.....+..+
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45677889999999999999888877752 1346689999999999999999999987653221111111
Q ss_pred H------HHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCe
Q 005480 301 V------EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI 370 (694)
Q Consensus 301 ~------~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~V 370 (694)
. +.....+...++.+++.+.. ..+.||+|||+|.+. ...++.|+..++.. ....
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~~--~~~~ 139 (367)
T PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEEP--PAHA 139 (367)
T ss_pred CcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhCC--CCce
Confidence 0 00011223567777776643 234699999999882 12456777777642 3345
Q ss_pred EEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005480 371 IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAI 449 (694)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~ 449 (694)
++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.++. ++..++.++..+.| +.+.+.+.++....
T Consensus 140 ~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 140 IFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred EEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 666677778888999988 55 368999999999988888777665542 23346777777654 56666666665554
Q ss_pred HHHHhCCcccCHHHHHHHHH
Q 005480 450 LAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 450 ~A~~~~~~~It~~di~~Ai~ 469 (694)
++ +.. ||.+++++.+.
T Consensus 216 y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 216 FC---GKN-ITRQAVTENLN 231 (367)
T ss_pred hc---CCC-CCHHHHHHHhC
Confidence 43 333 88888776653
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.4e-13 Score=160.11 Aligned_cols=213 Identities=22% Similarity=0.315 Sum_probs=151.7
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee---eeeh
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SISG 297 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi---~vs~ 297 (694)
+.++.++.+|+||+|++.+++.|+..+..- +.++.+||+||+|+|||++|+++|..+.++-- .-.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 456778899999999999999988887632 34567999999999999999999998866321 1122
Q ss_pred hhHHH---H----H--hh---hhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh
Q 005480 298 SEFVE---M----F--VG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (694)
Q Consensus 298 s~~~~---~----~--~G---~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l 361 (694)
..... . + -+ .+...+|++.+.+.. ....|++|||+|.+. ...++.||..|
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtL 142 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTL 142 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHh
Confidence 22211 0 0 01 234557777777653 334699999999982 23677888888
Q ss_pred cCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCc-cccHHHHHHhCCCCcHHHH
Q 005480 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADL 440 (694)
Q Consensus 362 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL 440 (694)
+. +...+++|.+|+.++.|.+.+++ |+ .++.+.+|+.++....++..+.+.++.- +..+..++..+.| +.+++
T Consensus 143 EE--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~A 216 (725)
T PRK07133 143 EE--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDA 216 (725)
T ss_pred hc--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 35567888888889999999998 66 4789999999999988887765544432 2236677777764 56777
Q ss_pred HHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 441 ANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 441 ~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
.++++.+..+. ...|+.+++.+.+
T Consensus 217 lslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 77777765442 3348888877654
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.1e-13 Score=154.37 Aligned_cols=212 Identities=22% Similarity=0.326 Sum_probs=146.3
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------Ceee
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFS 294 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~-------pfi~ 294 (694)
..+.++.+|+|++|++.+++.|++.+..- +.++.+|||||+|+|||++|+.+|..+++ |.-.
T Consensus 7 ~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence 45667789999999999999888877532 33557899999999999999999998764 1111
Q ss_pred -eehhhHHH-----HH-----hhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHh
Q 005480 295 -ISGSEFVE-----MF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (694)
Q Consensus 295 -vs~s~~~~-----~~-----~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~ 359 (694)
.+|..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+. ...++.|+.
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLLk 141 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALLK 141 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHHH
Confidence 11211111 00 01223445666555532 345799999999882 234577777
Q ss_pred hhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCc-cccHHHHHHhCCCCcHH
Q 005480 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGA 438 (694)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sga 438 (694)
.++.. ...+++|.+|+.++.+.+++.+ |+. .+.+++|+.++...+++.++...++.. +..+..++..+.| +.+
T Consensus 142 ~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77743 4456777777778889889888 664 689999999999999998887655432 2236677777664 567
Q ss_pred HHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 439 DLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 439 dL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
++.++++.+... +...||.+++.+++
T Consensus 216 ~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 216 DAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 787888777644 34468888887754
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.54 E-value=2.3e-13 Score=157.53 Aligned_cols=216 Identities=18% Similarity=0.231 Sum_probs=143.7
Q ss_pred CccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-------C---CCeeeeeh
Q 005480 229 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------G---VPFFSISG 297 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-------~---~pfi~vs~ 297 (694)
.-+.|.|.++..++|..++.. +... .+...++|+|+||||||++++.+..++ + +.+++++|
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgs--------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQS--------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcC--------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 347788888888888887765 3321 122335799999999999999997755 2 55789999
Q ss_pred hhHHHH----------Hhhh-------hhHHHHHHHHHHH--hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 298 SEFVEM----------FVGV-------GASRVRDLFKKAK--ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 298 s~~~~~----------~~G~-------~~~~vr~lF~~A~--~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
..+... +.+. ....+..+|.... ....+||+|||||.|..+ .+..|..|+
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLF 893 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLF 893 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHH
Confidence 543321 1011 1234556666552 234579999999999532 245666666
Q ss_pred hhhcCccCCCCeEEEEecCC---ccccchhhcCCCccce-eeeccCCCHHHHHHHHHHhhcCCC--CCccccHHHHHHhC
Q 005480 359 TEMDGFEGNTGIIVIAATNR---ADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRT 432 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~---p~~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t 432 (694)
.... .....++|||++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+.... ++++ .++.+|+..
T Consensus 894 R~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd-AIELIArkV 968 (1164)
T PTZ00112 894 DWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHT-AIQLCARKV 968 (1164)
T ss_pred HHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHhh
Confidence 5433 23457999999985 6678888888 6644 578899999999999999887532 2222 256666644
Q ss_pred CCCcHHHHH---HHHHHHHHHHHHhCCcccCHHHHHHHHHHHH
Q 005480 433 PGFSGADLA---NLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (694)
Q Consensus 433 ~G~sgadL~---~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~ 472 (694)
... .+|++ .+|+.|+.. ++...|+.+|+.+|++++.
T Consensus 969 Aq~-SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 969 ANV-SGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred hhc-CCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 322 23444 455555543 3456899999999998763
No 110
>PRK08727 hypothetical protein; Validated
Probab=99.53 E-value=9.7e-13 Score=135.61 Aligned_cols=210 Identities=18% Similarity=0.214 Sum_probs=132.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
..+..+|++.++.+... +..+...... .....++|+||+|||||+|++|++.++ +..+.+++..++
T Consensus 12 ~~~~~~f~~f~~~~~n~--~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGL--LAQLQALAAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCCcCChhhccCCcHHH--HHHHHHHHhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 44567899998765531 2111111111 122359999999999999999997664 667788887665
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
... +.+.++... ...+|+|||+|.+..+ ...+..+..++.... .+..-+|+++.+.|.
T Consensus 81 ~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 81 AGR--------LRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRAR---AAGITLLYTARQMPD 138 (233)
T ss_pred hhh--------HHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCChh
Confidence 432 233444433 3469999999988422 223344444554432 122224444444666
Q ss_pred cc---chhhcCCCccc--eeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005480 381 IL---DSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (694)
Q Consensus 381 ~L---D~aLlRpgRfd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~ 454 (694)
.+ ++.+.+ ||. ..+.++.|+.+++.+|++.++....+. ++..+..|+..+.| +.+.+.++++.....+...
T Consensus 139 ~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 139 GLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 55 689998 873 478999999999999999876543332 22236778888764 4566666677665545444
Q ss_pred CCcccCHHHHHHHHHH
Q 005480 455 GKAAISSKEIDDSIDR 470 (694)
Q Consensus 455 ~~~~It~~di~~Ai~~ 470 (694)
+ ..||...+++.+.+
T Consensus 216 ~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 K-RRVTVPFLRRVLEE 230 (233)
T ss_pred C-CCCCHHHHHHHHhh
Confidence 4 47999988887753
No 111
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.53 E-value=4.1e-13 Score=146.98 Aligned_cols=228 Identities=22% Similarity=0.307 Sum_probs=164.4
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehh
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s 298 (694)
-.+..||++++.-+.-.....-.......|.. .-..++||||+|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 45678999998776655554444444444421 22369999999999999999998876 3468999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 299 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
+|...++......-.+-|+.-. .-.+++||+|+.+.++... ..+.-.++|.+.. +.+-+|+.+...
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~~-------~~kqIvltsdr~ 218 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALLE-------NGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-----HHHHHHHHHHHHh-------cCCEEEEEcCCC
Confidence 9988877765555555666666 3468999999999644321 2333344444443 444677777666
Q ss_pred cccc---chhhcCCCccce--eeeccCCCHHHHHHHHHHhhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005480 379 ADIL---DSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (694)
Q Consensus 379 p~~L---D~aLlRpgRfdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (694)
|..+ ++.|.+ ||.. .+.+.+||.+.|..||+..+...++.- +.-...++.+.. -+.++|+.+++.....|.
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFAL 295 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHH
Confidence 7654 588888 8887 889999999999999999766555432 222566777665 578999999999999997
Q ss_pred HhCCcccCHHHHHHHHHHHHcCcC
Q 005480 453 RRGKAAISSKEIDDSIDRIVAGME 476 (694)
Q Consensus 453 ~~~~~~It~~di~~Ai~~v~~g~~ 476 (694)
..++ .||.+.+.+++.......+
T Consensus 296 ~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 296 FTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred hcCc-cCcHHHHHHHHHHhhcccc
Confidence 7766 8999999999987655443
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.4e-13 Score=156.91 Aligned_cols=215 Identities=19% Similarity=0.261 Sum_probs=152.8
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee----
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI---- 295 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v---- 295 (694)
...+++++.+|+||+|++.+++.|.+.+.. .+.|.++||+||+|+|||++|+++|+.+.+.....
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 345677888999999999999999887753 24566899999999999999999999886542211
Q ss_pred ---------ehhhHHHH----H------hhhhhHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCChhHHH
Q 005480 296 ---------SGSEFVEM----F------VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (694)
Q Consensus 296 ---------s~s~~~~~----~------~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (694)
+|..+.+. + ...+...+|++.+.+... ...|++|||+|.+. ..
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~ 147 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TA 147 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HH
Confidence 12111110 0 012345678887776432 34699999999982 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCcc-ccHHHHHHh
Q 005480 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMR 431 (694)
Q Consensus 353 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~ 431 (694)
.+|.||+.|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.+..|+.++...+++..+.+.+..-+ ..+..|+..
T Consensus 148 a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 148 AFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 577888888753 4457777777888888888888 66 47899999999999988887765544322 336667777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
+.| +.+++.++++.+... +...||.+++.+.+.
T Consensus 223 a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred cCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 765 688888888776544 234699888886653
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.6e-13 Score=158.41 Aligned_cols=211 Identities=19% Similarity=0.293 Sum_probs=147.5
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------e
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------S 294 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi-------~ 294 (694)
.++.++.+|+||+|++++++.|.+.+.. .+.|+.+|||||+|+|||++|+++|+.++++-- .
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 3566788999999999999999887753 235667999999999999999999998865310 0
Q ss_pred -eehhhHHH-------HHh---hhhhHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHh
Q 005480 295 -ISGSEFVE-------MFV---GVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (694)
Q Consensus 295 -vs~s~~~~-------~~~---G~~~~~vr~lF~~A~~~----aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~ 359 (694)
-+|.++.. .+. ..+...++++.+.+... ...|++|||+|.+. ....|.||+
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naLLk 141 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNALLK 141 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHHHH
Confidence 01111110 000 12334677777666422 23599999999982 245778888
Q ss_pred hhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005480 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (694)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (694)
.|+. ...++++|.+||.++.|.+.+++ |. ..+.|..++..+....++..+.+.++. ++..+..++..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 35578888888999999999998 65 467898899888888887776655433 23346778887775 567
Q ss_pred HHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 439 DLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 439 dL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
++.+++..+..+. + ..|+.+++...
T Consensus 216 ~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 216 DSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 7777777665543 2 35888777654
No 114
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.6e-13 Score=156.69 Aligned_cols=212 Identities=18% Similarity=0.238 Sum_probs=145.6
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-----ee
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-----SI 295 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi-----~v 295 (694)
+.++.++.+|+|++|++.+++.+.+.+.. .+.|+++||+||||+|||++|+++|..+.+.-. --
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45677889999999999999988877642 244668999999999999999999998753110 00
Q ss_pred ehhhHH---H----------HHhhhhhHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 296 SGSEFV---E----------MFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 296 s~s~~~---~----------~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
.|.... . .-...+...+|.+.+.+... ...|++|||+|.+- ....+.||
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaLL 140 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNALL 140 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHHH
Confidence 111100 0 00012334567776665432 23599999999982 12457788
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (694)
..|+. +...+++|.+|+.++.+.+++++ |+. .+.+..|+..+....++..+...+.. ++..+..++..+.| +.
T Consensus 141 KtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 87774 34567888888889999999998 664 68999999999988888877554422 22336677777765 57
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
+++.++++.+...+ +. .|+.+++.+.
T Consensus 215 R~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 215 RDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 77777777654433 32 3888777764
No 115
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=5.7e-13 Score=139.69 Aligned_cols=189 Identities=25% Similarity=0.309 Sum_probs=119.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh------HHHHHhhhhhHHHHH--------------------HHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE------FVEMFVGVGASRVRD--------------------LFKKA 319 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~------~~~~~~G~~~~~vr~--------------------lF~~A 319 (694)
++||+||||||||++|+++|...+.||+.++|.. +...+.+.....+.+ .+-.|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 7999999999999999999999999999998754 222222111111111 11122
Q ss_pred HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc----Cc-------cCCCCeEEEEecCCcc-----ccc
Q 005480 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----GF-------EGNTGIIVIAATNRAD-----ILD 383 (694)
Q Consensus 320 ~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld----~~-------~~~~~ViVIaaTN~p~-----~LD 383 (694)
.. .+.+|+||||+.+ +.+.+..+..+|.+-. +. ..+.++.||+|+|... .++
T Consensus 103 ~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 103 VR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred HH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 22 2369999999997 3344445555553210 00 1224678999999752 568
Q ss_pred hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccc--cHHHHHHhC---C-CCcHHHHHHHHHHHHHHHHHhCCc
Q 005480 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRT---P-GFSGADLANLLNEAAILAGRRGKA 457 (694)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~lA~~t---~-G~sgadL~~lv~eAa~~A~~~~~~ 457 (694)
+++++ || ..+.++.|+.++..+|++.+.. .+++. .+-.++..+ . -..+. ++.++.-|...+....+.
T Consensus 171 ~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~~~ 243 (262)
T TIGR02640 171 DALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDIPV 243 (262)
T ss_pred HHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCCCC
Confidence 89998 88 5789999999999999998752 22221 011111111 1 11111 555555555555556678
Q ss_pred ccCHHHHHHHHHHHHc
Q 005480 458 AISSKEIDDSIDRIVA 473 (694)
Q Consensus 458 ~It~~di~~Ai~~v~~ 473 (694)
.++.+||.+....++.
T Consensus 244 ~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 244 DVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCcHHHHHHHHHHhc
Confidence 8899999888877654
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.52 E-value=2.6e-13 Score=138.63 Aligned_cols=203 Identities=21% Similarity=0.320 Sum_probs=123.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehhh
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s~ 299 (694)
++..||++.+--+.-+..+.-+.....++.. .-..++||||+|+|||+|.+|++++. +..++++++.+
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 3567999996333333332222222233321 12259999999999999999998864 67899999999
Q ss_pred HHHHHhhhhhH-HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 300 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 300 ~~~~~~G~~~~-~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
|...+...... .+.++.+..+ ...+|+||++|.+.. ....+..+..+++ .+..+.+.+|+++...
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n---~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG---------KQRTQEELFHLFN---RLIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT---------HHHHHHHHHHHHH---HHHHTTSEEEEEESS-
T ss_pred HHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC---------chHHHHHHHHHHH---HHHhhCCeEEEEeCCC
Confidence 98776543322 2222223222 346899999999942 2223333434443 3333555666666666
Q ss_pred ccc---cchhhcCCCccce--eeeccCCCHHHHHHHHHHhhcCCCCCccc-cHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005480 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 379 p~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (694)
|.. +++.|.+ ||.. .+.+..||.+.|.+|++..+...++.-+. -.+.|+...+ -+.++|..+++.-...+
T Consensus 141 P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 141 PSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 654 5677877 8776 88999999999999999988766544222 2566777766 47889999888876655
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.4e-13 Score=152.19 Aligned_cols=205 Identities=21% Similarity=0.281 Sum_probs=146.2
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (694)
.++.++.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|+.+.++
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567888999999999999999888752 2356678999999999999999999987431
Q ss_pred --------------eeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHH
Q 005480 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (694)
Q Consensus 292 --------------fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (694)
++.++++. ..+...++++.+.+.. ....|++|||+|.+ ....
T Consensus 74 C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L--------------t~~A 133 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML--------------TKEA 133 (535)
T ss_pred cHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--------------CHHH
Confidence 12222110 0123456776665432 12359999999998 2346
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhC
Q 005480 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (694)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (694)
++.||..|+.. ...+.+|.+|+.+..+.+++++ |. ..+++.+++.++....++..+...+.. .+..+..++..+
T Consensus 134 ~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 134 FNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred HHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 77888888864 3456777777888999999998 64 578999999998888888777655433 233467788777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
.| +.+++.+++..+...+ ...||.+++.+.
T Consensus 209 ~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 65 7888888888877655 345777766544
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.51 E-value=6.5e-13 Score=141.82 Aligned_cols=208 Identities=22% Similarity=0.294 Sum_probs=136.9
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCee
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~-----~pfi 293 (694)
..|.++.++.+|+|++|.+++++.+...+.. . ..| +++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE---K--------NMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC---C--------CCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 4577888999999999999999988877642 1 112 589999999999999999999873 3445
Q ss_pred eeehhhHHHHHhhhhhHHHHHHHHHHHh------cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCC
Q 005480 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (694)
Q Consensus 294 ~vs~s~~~~~~~G~~~~~vr~lF~~A~~------~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (694)
.+++++-. ....+++.+..... ..+.+|+|||+|.+. ... .+.|+..++....
T Consensus 73 ~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~---~~~L~~~le~~~~- 131 (319)
T PRK00440 73 ELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDA---QQALRRTMEMYSQ- 131 (319)
T ss_pred Eecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHH---HHHHHHHHhcCCC-
Confidence 55443311 11112222222111 235699999999982 122 2344555554333
Q ss_pred CCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005480 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (694)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (694)
...+|.++|.+..+.+++.+ |+. .+++++|+.++...+++.++.+.+.. .+..+..++..+.| +.+.+.+.++.
T Consensus 132 -~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 132 -NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred -CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34555667777777777877 664 58999999999999999888665532 23347778877654 44555555544
Q ss_pred HHHHHHHhCCcccCHHHHHHHHH
Q 005480 447 AAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 447 Aa~~A~~~~~~~It~~di~~Ai~ 469 (694)
++.. ...||.+++.+++.
T Consensus 207 ~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 207 AAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHc-----CCCCCHHHHHHHhC
Confidence 3332 35799999987763
No 119
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.51 E-value=2e-13 Score=147.27 Aligned_cols=216 Identities=24% Similarity=0.380 Sum_probs=134.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeee--e
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI--S 296 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-------~~pfi~v--s 296 (694)
.++.|++|+|++++++.+.-.+.. +. -.++||+|+||||||++|+++++-+ ++|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~---~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID---PG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc---cC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 457899999999999877643211 10 1379999999999999999999987 3322111 1
Q ss_pred h-hhH---------------HHHHhhhhhHHH------------------HHHHHHHHhcCCeEEEEccccccccccCCC
Q 005480 297 G-SEF---------------VEMFVGVGASRV------------------RDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (694)
Q Consensus 297 ~-s~~---------------~~~~~G~~~~~v------------------r~lF~~A~~~aP~ILfIDEID~l~~~r~~~ 342 (694)
+ .++ .....+.+..++ ...+..| ...+||||||+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-------
Confidence 1 000 000001011100 0111111 1259999999998
Q ss_pred CCCCChhHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCCcc-ccchhhcCCCccceeeeccCCCH-HHHHHH
Q 005480 343 IGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTEI 409 (694)
Q Consensus 343 ~~~~~~e~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~Pd~-~eR~~I 409 (694)
+.. ++..|+..|+.- .....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|
T Consensus 141 ----~~~---~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 141 ----EDH---IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred ----CHH---HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 233 344444444321 1245789999999754 68899999 9999999998876 889999
Q ss_pred HHHhhcCCC----C------Cc--------------------ccc---HHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhC
Q 005480 410 LKVHGSNKK----F------DA--------------------DVS---LDVIAMRTP-GFSGADLANLLNEAAILAGRRG 455 (694)
Q Consensus 410 l~~~l~~~~----l------~~--------------------dvd---l~~lA~~t~-G~sgadL~~lv~eAa~~A~~~~ 455 (694)
++....... . .. +.. +..++..+. .-.-++|. +++.|...|..+|
T Consensus 212 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~G 290 (334)
T PRK13407 212 IRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEG 290 (334)
T ss_pred HHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcC
Confidence 987532110 0 00 000 122222222 12345665 9999999999999
Q ss_pred CcccCHHHHHHHHHHHHc
Q 005480 456 KAAISSKEIDDSIDRIVA 473 (694)
Q Consensus 456 ~~~It~~di~~Ai~~v~~ 473 (694)
++.|+.+|+..+..-++.
T Consensus 291 r~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 291 AEAVGRSHLRSVATMALS 308 (334)
T ss_pred CCeeCHHHHHHHHHHhhh
Confidence 999999999888765543
No 120
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=5e-13 Score=146.22 Aligned_cols=177 Identities=29% Similarity=0.444 Sum_probs=125.8
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhhc-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-HHhh-
Q 005480 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG- 306 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg-~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~-~~~G- 306 (694)
+-|+|++++|+.+...+.. ++.......+. -..|+++||+||||||||++|+++|..++.||+.+++.++.+ .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 3489999999998776653 22211111111 235789999999999999999999999999999999887764 5666
Q ss_pred hhhHHHHHHHHHH-------------------------------------------------------------------
Q 005480 307 VGASRVRDLFKKA------------------------------------------------------------------- 319 (694)
Q Consensus 307 ~~~~~vr~lF~~A------------------------------------------------------------------- 319 (694)
..+..++.+|+.|
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 3445555555544
Q ss_pred ------------------------------------------------------------------------HhcCCeEE
Q 005480 320 ------------------------------------------------------------------------KENAPCIV 327 (694)
Q Consensus 320 ------------------------------------------------------------------------~~~aP~IL 327 (694)
+.....||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 00134699
Q ss_pred EEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc--------CCCCeEEEEecC----CccccchhhcCCCcccee
Q 005480 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQ 395 (694)
Q Consensus 328 fIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgRfdr~ 395 (694)
||||||.++.+... .+.+-..+-+...||..++|-. ...++++|++.- .|+.|=|.|.- ||...
T Consensus 252 fiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 327 (441)
T TIGR00390 252 FIDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIR 327 (441)
T ss_pred EEEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 99999999876522 1223334457778888887732 245788998764 46667777765 99999
Q ss_pred eeccCCCHHHHHHHHH
Q 005480 396 VTVDVPDIRGRTEILK 411 (694)
Q Consensus 396 I~i~~Pd~~eR~~Il~ 411 (694)
+.+..++.++..+||.
T Consensus 328 v~L~~L~~edL~rILt 343 (441)
T TIGR00390 328 VELQALTTDDFERILT 343 (441)
T ss_pred EECCCCCHHHHHHHhc
Confidence 9999999999988883
No 121
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=2e-13 Score=162.14 Aligned_cols=166 Identities=22% Similarity=0.363 Sum_probs=120.3
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH------
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE------ 302 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~------ 302 (694)
--+|+.|++++|+.+.+.+...+.... .....++|+||||+|||++++++|+.++.+|+.++++...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 345699999999999887775332210 11235999999999999999999999999999988765432
Q ss_pred ---HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcC-----cc--------C
Q 005480 303 ---MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------G 366 (694)
Q Consensus 303 ---~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~-----~~--------~ 366 (694)
.|.|.....+...+..+....| ||+|||||.+..... + .....|+..+|. |. .
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g-----~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G-----DPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C-----CHHHHHHHHhccccEEEEeccccccccc
Confidence 3555555566666666544444 789999999964321 1 123445555542 11 1
Q ss_pred CCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc
Q 005480 367 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 367 ~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
-.++++|+|+|.. .|+++|++ |++ .|.+..++.++..+|.+.|+.
T Consensus 463 ls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 463 LSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 2579999999987 49999999 995 789999999999999998874
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.8e-13 Score=153.70 Aligned_cols=211 Identities=19% Similarity=0.271 Sum_probs=147.7
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eeee
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p-------fi~v 295 (694)
.+.++.+|+||+|++.+++.|+..+.. .+.|+.+|||||||+|||++|+++|+.+.++ .-.+
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456788999999999999998887752 2346679999999999999999999988652 1111
Q ss_pred -ehhhHHHH-------Hhh---hhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh
Q 005480 296 -SGSEFVEM-------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (694)
Q Consensus 296 -s~s~~~~~-------~~G---~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (694)
+|..+... +.| .+...++++.+.+. .....|++|||+|.+. ...++.||..
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~ 142 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKT 142 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHh
Confidence 11111110 111 12345566654443 2345699999999982 2367788888
Q ss_pred hcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHH
Q 005480 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGAD 439 (694)
Q Consensus 361 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgad 439 (694)
++. +...+++|.+|+.++.+.+++++ |+. .+.+.+++.++..++++..+...++. ++..+..|+..+.| +.++
T Consensus 143 LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~ 216 (563)
T PRK06647 143 IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRD 216 (563)
T ss_pred hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 45578888888888999999998 664 67899999999998888877554433 23336677877765 6788
Q ss_pred HHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 440 LANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 440 L~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+.++++.+...+ ...|+.+++.+.+
T Consensus 217 alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 217 AYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 888887765443 2458887777654
No 123
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4e-13 Score=148.92 Aligned_cols=217 Identities=16% Similarity=0.243 Sum_probs=146.0
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------- 293 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi------- 293 (694)
..++.++.+|+||+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+.+.+.-.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 34567788999999999999988877752 245668999999999999999999999866310
Q ss_pred ---ee------ehhhHHH-------HHhh---hhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhH
Q 005480 294 ---SI------SGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (694)
Q Consensus 294 ---~v------s~s~~~~-------~~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~ 350 (694)
.- +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+.
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-------------- 140 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-------------- 140 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------
Confidence 00 1111110 0111 123456666555532 223599999999982
Q ss_pred HHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHH
Q 005480 351 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIA 429 (694)
Q Consensus 351 ~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA 429 (694)
....+.|+..++. .....++|.+|+.+..+-+++.+ |.. .+++..++.++..+.++..+...+.. ++..++.++
T Consensus 141 ~~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 141 IAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1345667777764 33456666667777888888887 653 68899999888888888776554332 223367777
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHH-hCCcccCHHHHHHHH
Q 005480 430 MRTPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (694)
Q Consensus 430 ~~t~G~sgadL~~lv~eAa~~A~~-~~~~~It~~di~~Ai 468 (694)
..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 77764 567777777776666532 234579998888776
No 124
>PRK06620 hypothetical protein; Validated
Probab=99.50 E-value=7.7e-13 Score=134.70 Aligned_cols=197 Identities=15% Similarity=0.225 Sum_probs=126.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCC--ceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~p--rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
..+..+|++++-.+.-...+..+......| + ..| +.++||||||||||+|++++++..+..++. .....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~ 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc
Confidence 455678999887664433332222222222 1 123 579999999999999999999988764332 11110
Q ss_pred HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 302 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
.+.+ . ...+|+|||||.+ . +..+..+++.+. .+.+.++|+++..|..
T Consensus 80 -----------~~~~----~-~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~~p~~ 126 (214)
T PRK06620 80 -----------EEIL----E-KYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSDKSRN 126 (214)
T ss_pred -----------hhHH----h-cCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCCCccc
Confidence 1111 1 2368999999965 1 112223333322 2455788888766554
Q ss_pred --cchhhcCCCccce--eeeccCCCHHHHHHHHHHhhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005480 382 --LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (694)
Q Consensus 382 --LD~aLlRpgRfdr--~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~ 455 (694)
+ ++|++ |+.. .+.+..||.+.+..+++.++.... ++++ .++.|+.+..| +.+.+.++++.....+...+
T Consensus 127 l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~e-v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~ 201 (214)
T PRK06620 127 FTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQ-IIDFLLVNLPR-EYSKIIEILENINYFALISK 201 (214)
T ss_pred cch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC
Confidence 5 78888 8864 789999999999999988876544 3333 36778887764 67888888888654444444
Q ss_pred CcccCHHHHHHHH
Q 005480 456 KAAISSKEIDDSI 468 (694)
Q Consensus 456 ~~~It~~di~~Ai 468 (694)
..||...+++++
T Consensus 202 -~~it~~~~~~~l 213 (214)
T PRK06620 202 -RKITISLVKEVL 213 (214)
T ss_pred -CCCCHHHHHHHh
Confidence 568988887765
No 125
>PRK05642 DNA replication initiation factor; Validated
Probab=99.49 E-value=1.4e-12 Score=134.65 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=135.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
..+..+|++.+.... ....+.+..+... .+.....+++|+||+|+|||+|++++++++ +..+++++..++
T Consensus 12 ~~~~~tfdnF~~~~~--~~a~~~~~~~~~~-----~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 12 LRDDATFANYYPGAN--AAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CCCcccccccCcCCh--HHHHHHHHHHhhc-----cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 455678999883322 2233333222110 011123579999999999999999998754 678899999887
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
.... ..+.+..... .+|+|||++.+..+ ...+..+..+++. +..+...++++++..|.
T Consensus 85 ~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~---~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 85 LDRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLFNR---LRDSGRRLLLAASKSPR 142 (234)
T ss_pred Hhhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHHHH---HHhcCCEEEEeCCCCHH
Confidence 6531 1223333222 58999999988322 2223334444433 23345567777776554
Q ss_pred c---cchhhcCCCccc--eeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005480 381 I---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (694)
Q Consensus 381 ~---LD~aLlRpgRfd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~ 454 (694)
. ..+.|.+ ||. ..+.+..|+.++|.++++..+....+. ++.-++.++.+.+ -+.+.+.++++.-...+..
T Consensus 143 ~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~- 218 (234)
T PRK05642 143 ELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQ- 218 (234)
T ss_pred HcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-
Confidence 3 3688888 875 477889999999999999665544332 2223677777776 4688899888877654433
Q ss_pred CCcccCHHHHHHHH
Q 005480 455 GKAAISSKEIDDSI 468 (694)
Q Consensus 455 ~~~~It~~di~~Ai 468 (694)
.+..||..-+++++
T Consensus 219 ~~~~it~~~~~~~L 232 (234)
T PRK05642 219 AQRKLTIPFLKETL 232 (234)
T ss_pred cCCcCCHHHHHHHh
Confidence 34568988887765
No 126
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=7.2e-13 Score=145.05 Aligned_cols=177 Identities=29% Similarity=0.439 Sum_probs=128.1
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhhcC-CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-HHhh-
Q 005480 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGA-RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG- 306 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~-~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~-~~~G- 306 (694)
..|+|++++|+.+...+.. ++.......+.. ..|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3499999999999877643 221110001111 13689999999999999999999999999999999998886 5777
Q ss_pred hhhHHHHHHHHHHH------------------------------------------------------------------
Q 005480 307 VGASRVRDLFKKAK------------------------------------------------------------------ 320 (694)
Q Consensus 307 ~~~~~vr~lF~~A~------------------------------------------------------------------ 320 (694)
..+..++++|+.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 34556666666651
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 005480 321 ------------------------------------------------------------------------ENAPCIVF 328 (694)
Q Consensus 321 ------------------------------------------------------------------------~~aP~ILf 328 (694)
...-.|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01236999
Q ss_pred EccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc--------CCCCeEEEEecC----CccccchhhcCCCccceee
Q 005480 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQV 396 (694)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgRfdr~I 396 (694)
|||||.++.+.+. ++.+...+-+...||..++|-. ...+++|||+.- .|+.|-|.|.- ||..++
T Consensus 255 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 330 (443)
T PRK05201 255 IDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRV 330 (443)
T ss_pred EEcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999876532 2223334557778888888732 345788998763 46667788875 999999
Q ss_pred eccCCCHHHHHHHHH
Q 005480 397 TVDVPDIRGRTEILK 411 (694)
Q Consensus 397 ~i~~Pd~~eR~~Il~ 411 (694)
.+..++.++..+||.
T Consensus 331 ~L~~L~~~dL~~ILt 345 (443)
T PRK05201 331 ELDALTEEDFVRILT 345 (443)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999988883
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.47 E-value=6.6e-13 Score=138.09 Aligned_cols=196 Identities=23% Similarity=0.260 Sum_probs=129.0
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------e
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------F 292 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p------f 292 (694)
..+.+++++.+|+|++|++.+.+.|...+..-..| +.|||||||||||+.|+++|.++..| +
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 44678889999999999999999999988652222 69999999999999999999998662 2
Q ss_pred eeeehhhHHHHHhhhhhHHHHHHHHHHHhc---------CC-eEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc
Q 005480 293 FSISGSEFVEMFVGVGASRVRDLFKKAKEN---------AP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (694)
Q Consensus 293 i~vs~s~~~~~~~G~~~~~vr~lF~~A~~~---------aP-~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (694)
...+.++....- .....+. -|.+.... .| -|++|||.|.+ .....+.|...|+
T Consensus 92 l~lnaSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm--------------tsdaq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM--------------TSDAQAALRRTME 154 (346)
T ss_pred hhhccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh--------------hHHHHHHHHHHHh
Confidence 333333332211 1111111 13322211 12 69999999999 2345667778888
Q ss_pred CccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccc-cHHHHHHhCCCCcHHHHH
Q 005480 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLA 441 (694)
Q Consensus 363 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~lA~~t~G~sgadL~ 441 (694)
.+. ..+++|..||..+.|...+.+ |.. .+.|+..+.+.....|+..+.+.++.-+- .+..++..++| +-++..
T Consensus 155 ~~s--~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 155 DFS--RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccc--cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 754 456778889999999999998 664 45565555555556666666555544222 26777777664 344444
Q ss_pred HHHHHHHH
Q 005480 442 NLLNEAAI 449 (694)
Q Consensus 442 ~lv~eAa~ 449 (694)
..++.+..
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 55555443
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.2e-12 Score=147.03 Aligned_cols=213 Identities=19% Similarity=0.235 Sum_probs=142.4
Q ss_pred cccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------
Q 005480 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------- 293 (694)
Q Consensus 221 ~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi------- 293 (694)
..++.++.+|+||+|++.+++.+.+.+.. .+.|+.+|||||||+|||++|+++|+.+.++--
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 34566788999999999999988887753 234668999999999999999999998754210
Q ss_pred --eeehhhHHHH-------Hhh---hhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHH
Q 005480 294 --SISGSEFVEM-------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (694)
Q Consensus 294 --~vs~s~~~~~-------~~G---~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~L 357 (694)
..+|..+... +.| .+...++.+-+... .....|++|||+|.+. ....+.|
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~L 141 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNSL 141 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHHH
Confidence 0111111100 011 11234444333322 2446799999999982 2246778
Q ss_pred HhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCc
Q 005480 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFS 436 (694)
Q Consensus 358 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~s 436 (694)
+..++.. ...+++|.+||.++.+.+++.+ |+ ..+++..++.++....++..+.+.+.. ++..+..++..+.| +
T Consensus 142 Lk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888753 4467777888888999999998 66 368999999999888888776554432 23346778877764 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 437 GADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 437 gadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
.+++.++++..... .+ ..|+.+++.+++
T Consensus 216 lr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 216 LRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 55666666554433 23 348888887665
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.47 E-value=1.3e-12 Score=144.27 Aligned_cols=180 Identities=26% Similarity=0.338 Sum_probs=113.8
Q ss_pred cccccchHHHHHHHHHHHH----hcCc-hhhhhhcCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-H
Q 005480 231 DDVAGVDEAKQDFMEVVEF----LKKP-ERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-M 303 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~----l~~p-~~~~~lg~~~-prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~-~ 303 (694)
+-|+|++++++.+...+.. +... ..-...+... +.++||+||||||||++|+++|..++.||..++++.+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 3479999999998876632 2110 0000001111 357999999999999999999999999999999887753 4
Q ss_pred Hhhhh-hHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC-----------C
Q 005480 304 FVGVG-ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-----------N 367 (694)
Q Consensus 304 ~~G~~-~~~vr~lF~~A----~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-----------~ 367 (694)
|+|.. ...+..++..+ ....++||||||||.+.+++........-..+.+.+.||+.|+|... .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 66664 23334444322 23467899999999997654322111111122355556666655321 1
Q ss_pred CCeEEEEecCCcc--------------------------------------------------ccchhhcCCCccceeee
Q 005480 368 TGIIVIAATNRAD--------------------------------------------------ILDSALLRPGRFDRQVT 397 (694)
Q Consensus 368 ~~ViVIaaTN~p~--------------------------------------------------~LD~aLlRpgRfdr~I~ 397 (694)
.+.++|.|+|-.- .+.|+|+- |+|.++.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEee
Confidence 2467777777510 02244444 8888899
Q ss_pred ccCCCHHHHHHHHHH
Q 005480 398 VDVPDIRGRTEILKV 412 (694)
Q Consensus 398 i~~Pd~~eR~~Il~~ 412 (694)
+.+.+.+...+|+..
T Consensus 315 f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 315 LEKLDEEALIAILTK 329 (413)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999998888865
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.5e-12 Score=151.18 Aligned_cols=208 Identities=18% Similarity=0.284 Sum_probs=141.4
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee----eeh-
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS----ISG- 297 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~----vs~- 297 (694)
++.++.+|++++|++++++.|...+..- +.+.++||+||+|+|||++|+++|+.+.+.... -.|
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 4567789999999999999998887642 234579999999999999999999998763110 011
Q ss_pred --h---hHH----------HHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 298 --S---EFV----------EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 298 --s---~~~----------~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
. .+. +.....+...+|++.+.+.. ....|++|||+|.+. ....+.||
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLL 142 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALL 142 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHH
Confidence 1 110 01112345678888877643 234699999999982 24567888
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (694)
..|+. ....+++|.+|+.++.+-+.+++ |+ ..+.|..++.++....+...+.+.+.. .+..+..++..+.| +.
T Consensus 143 K~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~l 216 (620)
T PRK14948 143 KTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GL 216 (620)
T ss_pred HHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 88884 34567888888888889899988 66 467888888887777776665543322 12236777877765 35
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDD 466 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~ 466 (694)
+++.++++....+ . ..|+.+++.+
T Consensus 217 r~A~~lLeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 217 RDAESLLDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHHHhc---c--CCCCHHHHHH
Confidence 6666766654433 1 2466666554
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.46 E-value=2.3e-12 Score=149.90 Aligned_cols=218 Identities=22% Similarity=0.326 Sum_probs=135.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeee
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (694)
.++.+|++++|++.+.+.+.+.+. . ..|.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999999987655442 1 124579999999999999999997654 468999
Q ss_pred eehhhHH-------HHHhhhhhH----HHHHHHHH----------HHhcCCeEEEEccccccccccCCCCCCCChhHHHH
Q 005480 295 ISGSEFV-------EMFVGVGAS----RVRDLFKK----------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (694)
Q Consensus 295 vs~s~~~-------~~~~G~~~~----~vr~lF~~----------A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (694)
++|..+. ..+.+.... ..+..++. .......+|||||++.+ +...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHH
Confidence 9987642 111121100 01111110 00123469999999988 3334444
Q ss_pred HHHHHhhhc------Cc-----------------cCCCCeEEEEec-CCccccchhhcCCCccceeeeccCCCHHHHHHH
Q 005480 354 LNQLLTEMD------GF-----------------EGNTGIIVIAAT-NRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (694)
Q Consensus 354 l~~LL~~ld------~~-----------------~~~~~ViVIaaT-N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~I 409 (694)
+..++..-. .+ .....+++|++| +.++.++++|++ ||. .+.+++++.++...|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 444443210 00 012346666655 568889999988 886 568888999999999
Q ss_pred HHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--------CCcccCHHHHHHHHHH
Q 005480 410 LKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR--------GKAAISSKEIDDSIDR 470 (694)
Q Consensus 410 l~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~--------~~~~It~~di~~Ai~~ 470 (694)
++..+...... .+.-++.|+..+. .++...+++..+...+..+ +...|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99988764422 1222455555543 4555556665554443221 2347899999998864
No 132
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.7e-12 Score=150.20 Aligned_cols=216 Identities=16% Similarity=0.246 Sum_probs=145.2
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee--------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------- 293 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi-------- 293 (694)
.++.++.+|+||+|++.+++.|++.+.. .+.|.++||+||+|||||++|+++|+.+.+.--
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 3456788999999999999998886642 245668999999999999999999999876310
Q ss_pred ---e-----eehhhHHH-------HHhh---hhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHH
Q 005480 294 ---S-----ISGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (694)
Q Consensus 294 ---~-----vs~s~~~~-------~~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~ 351 (694)
. -+|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. .
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~ 141 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------T 141 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------H
Confidence 0 01111111 0111 123456666655532 234699999999982 2
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHH
Q 005480 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (694)
Q Consensus 352 ~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~ 430 (694)
...+.||..|+.. ...+++|.+|+.++.|-+.+.+ |. ..+++..++.++....++..+...+.. ++..++.++.
T Consensus 142 ~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467788888753 3446666667777888888888 54 578999999998888887766544322 2334677787
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHH-hCCcccCHHHHHHHH
Q 005480 431 RTPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (694)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~~-~~~~~It~~di~~Ai 468 (694)
.+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 217 ~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 7764 566666766665555421 124578888877765
No 133
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.45 E-value=9e-13 Score=142.70 Aligned_cols=224 Identities=21% Similarity=0.277 Sum_probs=141.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeee--
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI-- 295 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-------~~pfi~v-- 295 (694)
.+...|++|+|++++|..|...+. +|. ..|+||.||+|||||++||+++.-+ +.||...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~---~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVI---DPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhcc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 446789999999999998765442 232 2489999999999999999997755 2344300
Q ss_pred ----ehhhHHHHH-------------------hhhhhHHH------HHHHHHHH---------hcCCeEEEEcccccccc
Q 005480 296 ----SGSEFVEMF-------------------VGVGASRV------RDLFKKAK---------ENAPCIVFVDEIDAVGR 337 (694)
Q Consensus 296 ----s~s~~~~~~-------------------~G~~~~~v------r~lF~~A~---------~~aP~ILfIDEID~l~~ 337 (694)
.|++..... .+.+..++ ...|.... +....+||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 011111000 11122211 11121111 112369999999998
Q ss_pred ccCCCCCCCChhHHHHHHHHHhhhcC---------c--cCCCCeEEEEecCCcc-ccchhhcCCCccceeeeccCCC-HH
Q 005480 338 QRGTGIGGGNDEREQTLNQLLTEMDG---------F--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPD-IR 404 (694)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~Pd-~~ 404 (694)
+...+. .|+..|+. . ....++++|++.|..+ .+.++++. ||..++.+..|+ .+
T Consensus 157 ---------~~~~Q~---~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 157 ---------DDHLVD---ILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred ---------CHHHHH---HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 233333 34444432 1 1234688999888655 68999999 999999999997 58
Q ss_pred HHHHHHHHhhcCC--C-----------------------------CCccc-c-HHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005480 405 GRTEILKVHGSNK--K-----------------------------FDADV-S-LDVIAMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 405 eR~~Il~~~l~~~--~-----------------------------l~~dv-d-l~~lA~~t~G~sgadL~~lv~eAa~~A 451 (694)
.+.+|++...... + +++++ + +..++..+.--+++--..+++.|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 8999998753211 0 00000 0 222333343335666668889999999
Q ss_pred HHhCCcccCHHHHHHHHHHHHcCcC
Q 005480 452 GRRGKAAISSKEIDDSIDRIVAGME 476 (694)
Q Consensus 452 ~~~~~~~It~~di~~Ai~~v~~g~~ 476 (694)
.-+|+..|+.+|+..+..-++....
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999987776543
No 134
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.45 E-value=8.8e-13 Score=148.25 Aligned_cols=208 Identities=22% Similarity=0.324 Sum_probs=156.0
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--eeeehh--
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--FSISGS-- 298 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf--i~vs~s-- 298 (694)
.++++.+|+|++|++.+...|.+.+..-+- +.+.||+||.|||||++||.+|+.+++.= ..--|.
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri-----------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRI-----------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcc-----------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 456788999999999999999998875433 34799999999999999999999886641 111111
Q ss_pred ----hH--------HH--HHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh
Q 005480 299 ----EF--------VE--MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (694)
Q Consensus 299 ----~~--------~~--~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (694)
++ ++ .-...+...+|++.+.+.- ..+.|.+|||+|.| ..+.+|.||+.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhcc
Confidence 11 11 1112345678888887742 34569999999998 45689999999
Q ss_pred hcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCcccc-HHHHHHhCCCCcHHH
Q 005480 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGAD 439 (694)
Q Consensus 361 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~lA~~t~G~sgad 439 (694)
++ ++..+|++|.||..++.+++.+++ |. .++.+..-+.++....|+..+.+..+.-+.+ +..+++...| |.+|
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 98 467789999999999999999998 54 3457888888888888888888777664433 6777887776 6899
Q ss_pred HHHHHHHHHHHHHHhCCcccCHHHHH
Q 005480 440 LANLLNEAAILAGRRGKAAISSKEID 465 (694)
Q Consensus 440 L~~lv~eAa~~A~~~~~~~It~~di~ 465 (694)
...+++.|..... ..||.+++.
T Consensus 217 alslLDq~i~~~~----~~It~~~v~ 238 (515)
T COG2812 217 ALSLLDQAIAFGE----GEITLESVR 238 (515)
T ss_pred HHHHHHHHHHccC----CcccHHHHH
Confidence 9999999876652 345544444
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3e-12 Score=148.52 Aligned_cols=212 Identities=19% Similarity=0.257 Sum_probs=142.6
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee---ee--
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---IS-- 296 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~---vs-- 296 (694)
.++.++.+|+||+|++.+++.|+..+..- +.++.+||+||+|+|||++|+++|+.+.+.... ..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 35678889999999999999988877532 235578999999999999999999987643210 01
Q ss_pred -h---hhHHHH----H------hhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 297 -G---SEFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 297 -~---s~~~~~----~------~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
| ..+... + ...+...++++.+.+.. ....||||||+|.+. ...++.||
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLL 141 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALL 141 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHH
Confidence 1 111100 0 01123345555544432 234699999999982 23567788
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (694)
+.++.. ...+++|.+|+..+.+.+.+.+ |+. .+.|..++..+...+++..+.+.++. ++..+..++..+.| +.
T Consensus 142 k~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 887753 3456777777777888888887 653 57899999999888888776654432 22236677777765 67
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+++.+.++....+ +...|+.+++.+.+
T Consensus 216 r~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 216 RDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 7777777765442 34468888876643
No 136
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.44 E-value=3.3e-12 Score=134.87 Aligned_cols=129 Identities=23% Similarity=0.333 Sum_probs=95.5
Q ss_pred CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC------------ccccchhhcCCCc
Q 005480 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~------------p~~LD~aLlRpgR 391 (694)
|.||||||.|.| +-+.-..+|.-+. . .-.-++|.|||+ |+-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlE---s---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALE---S---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhh---c---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 789999999888 3344444444433 1 122367777886 6677777776 5
Q ss_pred cceeeeccCCCHHHHHHHHHHhhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 005480 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (694)
Q Consensus 392 fdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~ 470 (694)
+ ..|...+++.++.++|++..++...+.- +..++.|+....--|-+---+|+.-|...|.++|+..|..+|+++|.+-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 5 4677888899999999999987765442 2337778877766777888899999999999999999999999999765
Q ss_pred HH
Q 005480 471 IV 472 (694)
Q Consensus 471 v~ 472 (694)
..
T Consensus 432 F~ 433 (450)
T COG1224 432 FL 433 (450)
T ss_pred Hh
Confidence 43
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.4e-12 Score=137.44 Aligned_cols=218 Identities=22% Similarity=0.342 Sum_probs=153.2
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----eeeeehhhHHHH
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSISGSEFVEM 303 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p-----fi~vs~s~~~~~ 303 (694)
.-+.+.+.++..+.+..++...-. ...|.++++|||||||||..++.++.++.-+ +++++|....+.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 334489999999998887655222 2346679999999999999999999987433 899999766432
Q ss_pred H---------------hhhhh-HHHHHHHHHHH-hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC
Q 005480 304 F---------------VGVGA-SRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (694)
Q Consensus 304 ~---------------~G~~~-~~vr~lF~~A~-~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~ 366 (694)
+ .|... +....+++... ...+-||++||+|.|..+.+ ..+..|+...+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~-- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--
Confidence 2 11111 12223333332 24567999999999964321 5777777766544
Q ss_pred CCCeEEEEecCCc---cccchhhcCCCccc-eeeeccCCCHHHHHHHHHHhhcCC----CCCccccHHHHH---HhCCCC
Q 005480 367 NTGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIA---MRTPGF 435 (694)
Q Consensus 367 ~~~ViVIaaTN~p---~~LD~aLlRpgRfd-r~I~i~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~lA---~~t~G~ 435 (694)
..++.+|+.+|.. +.+|+.+.+ +|. ..|.|++++.++...|++...... .+++++ ++.+| ....|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G- 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG- 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-
Confidence 5678999999864 578898887 443 368999999999999999887543 222222 33333 33333
Q ss_pred cHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 005480 436 SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (694)
Q Consensus 436 sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v 471 (694)
..+-.-.+|+.|+..|.+++...++.+++.+|.+.+
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 445556899999999999999999999999995543
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=4.5e-12 Score=129.79 Aligned_cols=192 Identities=21% Similarity=0.357 Sum_probs=130.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
....+.+++++|++++|+.|.+....+-. ..+..++||+|++|||||+++|++..+. |..++.++..++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 44578999999999999999886655332 2356789999999999999999998865 788888887765
Q ss_pred HHHHhhhhhHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc--cCCCCeEEEEecC
Q 005480 301 VEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAATN 377 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~~~~~ViVIaaTN 377 (694)
.. +.++++..+. ..+-|||+|++- + ...+. ....|-..|||- ....+|++.+|+|
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F---------e~~d~---~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F---------EEGDT---EYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C---------CCCcH---HHHHHHHHhcCccccCCCcEEEEEecc
Confidence 43 4455555542 345799999863 2 11222 334444555553 2356899999999
Q ss_pred Cccccchhhc---------------------CCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccc-c----HHHHHHh
Q 005480 378 RADILDSALL---------------------RPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-S----LDVIAMR 431 (694)
Q Consensus 378 ~p~~LD~aLl---------------------RpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv-d----l~~lA~~ 431 (694)
+-+.+..... =..||...+.|..||.++-.+|++.++...++.-+. + ....|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 8443332111 123999999999999999999999999766654331 1 1223444
Q ss_pred CCCCcHHHHHHHHH
Q 005480 432 TPGFSGADLANLLN 445 (694)
Q Consensus 432 t~G~sgadL~~lv~ 445 (694)
..|.||+-..+.++
T Consensus 230 rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 230 RGGRSGRTARQFID 243 (249)
T ss_pred cCCCCHHHHHHHHH
Confidence 45556655444443
No 139
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=2.4e-13 Score=150.90 Aligned_cols=216 Identities=25% Similarity=0.402 Sum_probs=144.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCeeeeehhhHHH
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE 302 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~---e~~~pfi~vs~s~~~~ 302 (694)
...+|+||+|.+.+..++.+.+...... +..|||.|++||||.++|++|-+ +.+.||+.++|..+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~t----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKT----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCC----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3568999999999999999888765443 34799999999999999999965 4578999999987765
Q ss_pred HH-------------hhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Cc---
Q 005480 303 MF-------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF--- 364 (694)
Q Consensus 303 ~~-------------~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~--- 364 (694)
.. .|....--..+|+.|..+ .||+|||..+ +...+..+...|++-+ ..
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCC
Confidence 32 222222245677777554 7999999888 3445555555555421 11
Q ss_pred -cCCCCeEEEEecCC--ccccchhhcCCCccce--eeeccCCCHHHHHHHH--------HHhhcCCC-----CCccccHH
Q 005480 365 -EGNTGIIVIAATNR--ADILDSALLRPGRFDR--QVTVDVPDIRGRTEIL--------KVHGSNKK-----FDADVSLD 426 (694)
Q Consensus 365 -~~~~~ViVIaaTN~--p~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~Il--------~~~l~~~~-----l~~dvdl~ 426 (694)
....+|.||||||+ .+.+...-+|...|.| ++.+..|..++|.+-+ +.+.++.+ +.++.-..
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 11336999999997 2344444455555666 8889999999997622 22222221 33333233
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHH-HHH
Q 005480 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID-DSI 468 (694)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~-~Ai 468 (694)
.+...++| +.++|+|++..+...+. ....|+.+|+. .++
T Consensus 456 L~~y~WPG-NVRELeNviER~v~~~~--~~~~I~~~~lp~~~l 495 (560)
T COG3829 456 LLRYDWPG-NVRELENVIERAVNLVE--SDGLIDADDLPAFAL 495 (560)
T ss_pred HHhCCCCc-hHHHHHHHHHHHHhccC--Ccceeehhhcchhhh
Confidence 34445665 46899999999887553 34457777776 444
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=4e-12 Score=151.08 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=115.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCc-eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH---
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--- 303 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~---~~pr-gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~--- 303 (694)
+.|+|++++++.+.+.+...+ .|. ..|. .+||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~-------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR-------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh-------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 568899999998888776532 122 1244 48999999999999999999999999999999998652
Q ss_pred --Hhhhh-----hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc---------CC
Q 005480 304 --FVGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GN 367 (694)
Q Consensus 304 --~~G~~-----~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~~ 367 (694)
+.|.. ......+.+..+....+||+|||||.+ +. ...+.|+..+|.-. .-
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~---~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HP---DIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CH---HHHHHHHHhhccCeeecCCCcccCC
Confidence 23221 112233444555667789999999987 22 34555555555321 12
Q ss_pred CCeEEEEecCCcc-------------------------ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc
Q 005480 368 TGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 368 ~~ViVIaaTN~p~-------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
.++++|+|||... .+.|.++. |+|.+|.|.+.+.++..+|++..+.
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 3578999998631 13556665 9999999999999999999987764
No 141
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.40 E-value=3.8e-12 Score=137.71 Aligned_cols=219 Identities=22% Similarity=0.307 Sum_probs=137.1
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCee--------
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF-------- 293 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-------~~pfi-------- 293 (694)
.|..|+|++++|..+.-.+- +|. ..+++|.|+||+|||++++++++-. ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 58999999999987653321 221 2379999999999999999999766 33332
Q ss_pred -eeehhh----------------HHHHHhhhhhHHH------------------HHHHHHHHhcCCeEEEEccccccccc
Q 005480 294 -SISGSE----------------FVEMFVGVGASRV------------------RDLFKKAKENAPCIVFVDEIDAVGRQ 338 (694)
Q Consensus 294 -~vs~s~----------------~~~~~~G~~~~~v------------------r~lF~~A~~~aP~ILfIDEID~l~~~ 338 (694)
..+|.. |.+.-.+.++.++ ..++.+| ...+||||||+.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC---
Confidence 011111 0110011111111 1122222 2359999999998
Q ss_pred cCCCCCCCChhHHHHHHHHHhhh------cCc--cCCCCeEEEEecCCcc-ccchhhcCCCccceeeeccCCCH-HHHHH
Q 005480 339 RGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTE 408 (694)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~l------d~~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~Pd~-~eR~~ 408 (694)
....+..+.+.+.+- +|. ..+.++++|+++|..+ .+.++++. ||..++.++.|+. ++|.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 233333333333221 111 1234689999988655 68999999 9999999999975 88889
Q ss_pred HHHHhhcCC-------------------------------CCCccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005480 409 ILKVHGSNK-------------------------------KFDADV--SLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (694)
Q Consensus 409 Il~~~l~~~-------------------------------~l~~dv--dl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~ 455 (694)
|++...... .+++++ -+..++..+..-+.+--..+++-|...|..+|
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 998743210 011110 02233444443355666789999999999999
Q ss_pred CcccCHHHHHHHHHHHHcCc
Q 005480 456 KAAISSKEIDDSIDRIVAGM 475 (694)
Q Consensus 456 ~~~It~~di~~Ai~~v~~g~ 475 (694)
+..|+.+|+..+..-++...
T Consensus 294 R~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999988776543
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=1.8e-12 Score=153.24 Aligned_cols=164 Identities=20% Similarity=0.306 Sum_probs=113.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCc-eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-----HHh
Q 005480 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-----MFV 305 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~pr-gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~-----~~~ 305 (694)
.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||.+|+++|..++.||+.++|+++.+ .+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999998875432100 011243 5999999999999999999999999999999998854 333
Q ss_pred hhhhHH-----HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc--c-------CCCCeE
Q 005480 306 GVGASR-----VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E-------GNTGII 371 (694)
Q Consensus 306 G~~~~~-----vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~-------~~~~Vi 371 (694)
|..... -..+.+..+....|||||||||.+ +. .+.+.|+..||.- . .-.+++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~---~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HP---DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hH---HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 322111 112333345566699999999998 22 3455555555421 0 113688
Q ss_pred EEEecCCc-------------------------cccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc
Q 005480 372 VIAATNRA-------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 372 VIaaTN~p-------------------------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
+|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 124466666 8999999999999988888876653
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.4e-12 Score=144.93 Aligned_cols=212 Identities=19% Similarity=0.306 Sum_probs=143.1
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee------
Q 005480 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI------ 295 (694)
Q Consensus 222 ~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v------ 295 (694)
.++.++.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|..+.+.-...
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3566788999999999999998887752 23566799999999999999999999876421110
Q ss_pred ---ehhhHHHH-------Hhh---hhhHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 296 ---SGSEFVEM-------FVG---VGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 296 ---s~s~~~~~-------~~G---~~~~~vr~lF~~A~~~----aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
+|..+.+. +.+ .+...++++.+.+... ..-|++|||+|.+. ....+.|+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naLL 142 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAFL 142 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHHH
Confidence 12222110 011 1234567777666432 23599999999982 23567788
Q ss_pred hhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCcc-ccHHHHHHhCCCCcH
Q 005480 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSG 437 (694)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~G~sg 437 (694)
..|+.. ....++|.+|+.+..+-+.+++ |. ..+.+..++..+....++..+...++.-+ ..+..|+..+.| +.
T Consensus 143 K~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888753 3456777777777889999998 55 46899999999988888877766554422 236777877753 56
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 438 adL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
+++.++++....++ +.. |+.+++.+.+
T Consensus 217 r~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 217 RDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 66666666555443 322 6666655443
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=3.2e-12 Score=136.63 Aligned_cols=139 Identities=18% Similarity=0.229 Sum_probs=101.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH--HhhhhhHH----------HHHHHHHHHhcCCeEEEEcc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGVGASR----------VRDLFKKAKENAPCIVFVDE 331 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~--~~G~~~~~----------vr~lF~~A~~~aP~ILfIDE 331 (694)
.++|||.||||||||++++.+|.+++.|++.++++..... ++|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3479999999999999999999999999999998876654 34432110 1123344433 468899999
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHhh-----hc----CccCCCCeEEEEecCCcc------------ccchhhcCCC
Q 005480 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD----GFEGNTGIIVIAATNRAD------------ILDSALLRPG 390 (694)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~l~~LL~~-----ld----~~~~~~~ViVIaaTN~p~------------~LD~aLlRpg 390 (694)
||.. .......++.+|+. +. .+..+..+.||||+|..+ .++.|++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987 33445566666652 11 122445799999999754 46789998
Q ss_pred ccceeeeccCCCHHHHHHHHHHhhcC
Q 005480 391 RFDRQVTVDVPDIRGRTEILKVHGSN 416 (694)
Q Consensus 391 Rfdr~I~i~~Pd~~eR~~Il~~~l~~ 416 (694)
||-.++.++.|+.+.-.+|+......
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999876543
No 145
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.37 E-value=4.5e-12 Score=148.21 Aligned_cols=213 Identities=21% Similarity=0.318 Sum_probs=137.6
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-------------------- 288 (694)
.|.+|+|++.++..+.-.. .+|. ..||||+|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5889999999997664332 2221 1379999999999999999999876
Q ss_pred ---------------CCCeeeeehhhHHHHHhhhhh--HHH--------HHHHHHHHhcCCeEEEEccccccccccCCCC
Q 005480 289 ---------------GVPFFSISGSEFVEMFVGVGA--SRV--------RDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 343 (694)
Q Consensus 289 ---------------~~pfi~vs~s~~~~~~~G~~~--~~v--------r~lF~~A~~~aP~ILfIDEID~l~~~r~~~~ 343 (694)
..||+.+.++...+.++|... ..+ ..++..| ...|||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC--------
Confidence 357777666544443433210 000 1112222 2259999999998
Q ss_pred CCCChhHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCCc-cccchhhcCCCccceeeeccCCC-HHHHHHHH
Q 005480 344 GGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA-DILDSALLRPGRFDRQVTVDVPD-IRGRTEIL 410 (694)
Q Consensus 344 ~~~~~e~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p-~~LD~aLlRpgRfdr~I~i~~Pd-~~eR~~Il 410 (694)
+.. +++.|+..|+.- ....++++|+++|.. ..+.++|+. ||+.+|.++.|. .+++.+++
T Consensus 139 ---~~~---~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 139 ---DDH---LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ---CHH---HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 233 444455554321 113468999999964 368889999 999888888774 56677777
Q ss_pred HHhhcC-------------------------------CCCCccccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHhCC
Q 005480 411 KVHGSN-------------------------------KKFDADVSLDVIAMRT--PGF-SGADLANLLNEAAILAGRRGK 456 (694)
Q Consensus 411 ~~~l~~-------------------------------~~l~~dvdl~~lA~~t--~G~-sgadL~~lv~eAa~~A~~~~~ 456 (694)
+..... ..+.++ .+..++..+ .|. +.+-...+++-|...|..+|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDGR 289 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 653210 011111 122222222 234 355566788999999999999
Q ss_pred cccCHHHHHHHHHHHHc
Q 005480 457 AAISSKEIDDSIDRIVA 473 (694)
Q Consensus 457 ~~It~~di~~Ai~~v~~ 473 (694)
..|+.+|+.+|+.-++.
T Consensus 290 ~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 290 RRVTAEDVREAAELVLP 306 (633)
T ss_pred CcCCHHHHHHHHHHHhh
Confidence 99999999999988773
No 146
>PRK09087 hypothetical protein; Validated
Probab=99.35 E-value=3e-11 Score=124.12 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=129.1
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 223 ~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
...+..+|++++.-+.-...+ ..+..+..+ ....++|+||+|+|||+|+++++...++. +++..++..
T Consensus 13 ~~~~~~~~~~Fi~~~~N~~a~-~~l~~~~~~---------~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~ 80 (226)
T PRK09087 13 SHDPAYGRDDLLVTESNRAAV-SLVDHWPNW---------PSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS 80 (226)
T ss_pred CCCCCCChhceeecCchHHHH-HHHHhcccC---------CCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch
Confidence 345567899999643222222 222221111 12249999999999999999999887654 555544433
Q ss_pred HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc-
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI- 381 (694)
Q Consensus 303 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~- 381 (694)
.+. ..... .+|+|||+|.+.. . +..+-.+++.+. .+...+||+++..|..
T Consensus 81 ~~~-----------~~~~~---~~l~iDDi~~~~~--------~----~~~lf~l~n~~~---~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 81 DAA-----------NAAAE---GPVLIEDIDAGGF--------D----ETGLFHLINSVR---QAGTSLLMTSRLWPSSW 131 (226)
T ss_pred HHH-----------Hhhhc---CeEEEECCCCCCC--------C----HHHHHHHHHHHH---hCCCeEEEECCCChHHh
Confidence 221 11111 3788999998621 1 112333333222 2345677777655543
Q ss_pred --cchhhcCCCccc--eeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005480 382 --LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (694)
Q Consensus 382 --LD~aLlRpgRfd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~ 456 (694)
..+.+++ ||. ..+++..|+.+.|.++++.++....+. ++..++.|+.+..| +.+.+..+++.....+...+
T Consensus 132 ~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~- 207 (226)
T PRK09087 132 NVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK- 207 (226)
T ss_pred ccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-
Confidence 3577888 886 589999999999999999998765443 22336778887773 56777777777766665545
Q ss_pred cccCHHHHHHHHHHH
Q 005480 457 AAISSKEIDDSIDRI 471 (694)
Q Consensus 457 ~~It~~di~~Ai~~v 471 (694)
..||...+++++..+
T Consensus 208 ~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHhh
Confidence 568999999988764
No 147
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=1.2e-11 Score=114.32 Aligned_cols=123 Identities=40% Similarity=0.629 Sum_probs=82.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhhhhHH---HHHHHHHHHhcCCeEEEEcccccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASR---VRDLFKKAKENAPCIVFVDEIDAVGR 337 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~~~~~---vr~lF~~A~~~aP~ILfIDEID~l~~ 337 (694)
.++++++||||||||++++.++... +.+++++++.++........... ....+.......+++|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 4479999999999999999999998 89999999988765433222111 1222333445668999999999871
Q ss_pred ccCCCCCCCChhHHHHHHHHHhhhcCc-cCCCCeEEEEecCCcc--ccchhhcCCCccceeeecc
Q 005480 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVD 399 (694)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~~-~~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr~I~i~ 399 (694)
......+.+++...... ....++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 ----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11222333333332211 1246788899998776 67777777 898776665
No 148
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.34 E-value=2.9e-12 Score=142.30 Aligned_cols=212 Identities=25% Similarity=0.342 Sum_probs=135.8
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~~~~~ 303 (694)
...+.+++|.+.+.+++++.+..+...+. .|||+|++||||.++||+|-.. .+.||+.++|..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35788999999999999999988776543 7999999999999999999554 4679999999876543
Q ss_pred -----Hhhh------h-hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh--cCcc----
Q 005480 304 -----FVGV------G-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--DGFE---- 365 (694)
Q Consensus 304 -----~~G~------~-~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l--d~~~---- 365 (694)
+.|. + ..+-...|+.|..+ .||||||..+ .-+.|.-+...|++= ....
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 2221 1 11223466666544 8999999988 334444444444421 1111
Q ss_pred CCCCeEEEEecCC--ccccchhhcCCCccce--eeeccCCCHHHHHH----HHHHh----hcCCC-CCccccHHHHHHhC
Q 005480 366 GNTGIIVIAATNR--ADILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVH----GSNKK-FDADVSLDVIAMRT 432 (694)
Q Consensus 366 ~~~~ViVIaaTN~--p~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~----l~~~~-l~~dvdl~~lA~~t 432 (694)
-+.+|.||+|||. .+.+...-+|...|.| ++.+..|...+|.+ +++++ +...+ -...++-+.++...
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 1336899999986 3344444455555555 88999999999976 22333 33222 12344444555444
Q ss_pred CCCcH---HHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 005480 433 PGFSG---ADLANLLNEAAILAGRRGKAAISSKEID 465 (694)
Q Consensus 433 ~G~sg---adL~~lv~eAa~~A~~~~~~~It~~di~ 465 (694)
..-+| ++|+|++..++..+ ....|+.+++.
T Consensus 353 ~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 353 AYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred hCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 43334 55556655555544 44556665554
No 149
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.4e-10 Score=135.30 Aligned_cols=166 Identities=26% Similarity=0.381 Sum_probs=126.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCee
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi 293 (694)
....-.++-|+|.++.++.+.+++..-. ..+-+|.|+||+|||.++..+|.+. +..++
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~RR~------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSRRT------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhccC------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 3456689999999998888777765311 2257899999999999999999865 56678
Q ss_pred eeehhhHHH--HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeE
Q 005480 294 SISGSEFVE--MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (694)
Q Consensus 294 ~vs~s~~~~--~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (694)
.++.+.++. +|.|+.+++++.+.+...+..+.||||||||.+.+...... + .-.....+.-.|. +..+.
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL~ 301 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGELR 301 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCeE
Confidence 888888874 68999999999999999988899999999999965433211 1 1112223333332 56788
Q ss_pred EEEecCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHh
Q 005480 372 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (694)
Q Consensus 372 VIaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~ 413 (694)
+||||+.-+ .=|+||-| ||. .|.+.-|+.++-..||+-.
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHH
Confidence 999997533 34899999 995 7899999999999998754
No 150
>PHA02244 ATPase-like protein
Probab=99.31 E-value=5.8e-11 Score=128.48 Aligned_cols=148 Identities=23% Similarity=0.359 Sum_probs=93.8
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH--h
Q 005480 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF--V 305 (694)
Q Consensus 228 ~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~--~ 305 (694)
+++.-+.+..........+..++... .+|||+||||||||++|+++|..++.||+.+++. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~-----------~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN-----------IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 34444444444445555555545443 3799999999999999999999999999999843 2111 1
Q ss_pred hh--hhHHH-HHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh-----hcC-ccCCCCeEEEEec
Q 005480 306 GV--GASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDG-FEGNTGIIVIAAT 376 (694)
Q Consensus 306 G~--~~~~v-r~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~-----ld~-~~~~~~ViVIaaT 376 (694)
|. ..... ..-|-.|.+ ..++|+||||+.+ .......++.++.. .++ +....++.+|+|+
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATs 228 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAG 228 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcC-----------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEee
Confidence 10 00011 112222322 3479999999987 23344455555532 111 1234678999999
Q ss_pred CCc-----------cccchhhcCCCccceeeeccCCCH
Q 005480 377 NRA-----------DILDSALLRPGRFDRQVTVDVPDI 403 (694)
Q Consensus 377 N~p-----------~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (694)
|.+ ..+++++++ || ..|+++.|+.
T Consensus 229 N~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 229 NTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred CCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 973 578999999 99 4789999983
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=6.6e-11 Score=142.27 Aligned_cols=195 Identities=23% Similarity=0.320 Sum_probs=125.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCce-EEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH---
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prg-VLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~--- 303 (694)
+.|+|++++.+.+.+.+...+..-. ....|.| +||+||||||||.+|+++|..+ ..+++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 5788999999988887765321100 0123555 8999999999999999999988 458899999998653
Q ss_pred ---------HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc---------
Q 005480 304 ---------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------- 365 (694)
Q Consensus 304 ---------~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------- 365 (694)
|+|.... ..+.+..+++.++||+|||||.. +.. ..+.|+..+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~---v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPD---VLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHH---HHHHHHHHhhcceeecCCCcEE
Confidence 2332211 12344456677899999999976 333 4444555444221
Q ss_pred CCCCeEEEEecCCcc-----------------------------ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcC
Q 005480 366 GNTGIIVIAATNRAD-----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (694)
Q Consensus 366 ~~~~ViVIaaTN~p~-----------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~ 416 (694)
.-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 013678999998511 13456666 887 8899999999999998776543
Q ss_pred C--------CCCcccc---HHHHHHhCCC--CcHHHHHHHHHHHH
Q 005480 417 K--------KFDADVS---LDVIAMRTPG--FSGADLANLLNEAA 448 (694)
Q Consensus 417 ~--------~l~~dvd---l~~lA~~t~G--~sgadL~~lv~eAa 448 (694)
. ++.-.++ .+.|+....+ +-.+.|.++++.-.
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 2211222 4455555432 34566666665533
No 152
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.28 E-value=6.6e-11 Score=134.27 Aligned_cols=213 Identities=23% Similarity=0.308 Sum_probs=134.1
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 288 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~------------------ 288 (694)
...|+||.|++.+++.+.-.+. ....++|.||||||||++++++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 3589999999999776554331 12379999999999999999998622
Q ss_pred ----------CCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHH
Q 005480 289 ----------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (694)
Q Consensus 289 ----------~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL 358 (694)
..||...+++......+|.+...-...+..|. ..+|||||++.+ ....+..+.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 23555444443333333433222223344443 359999999998 233444555544
Q ss_pred hhhc----C----ccCCCCeEEEEecCCc------c-----------------ccchhhcCCCccceeeeccCCCHHH--
Q 005480 359 TEMD----G----FEGNTGIIVIAATNRA------D-----------------ILDSALLRPGRFDRQVTVDVPDIRG-- 405 (694)
Q Consensus 359 ~~ld----~----~~~~~~ViVIaaTN~p------~-----------------~LD~aLlRpgRfdr~I~i~~Pd~~e-- 405 (694)
+.-. . .....++.+|+++|.- + .+...|++ |||.++.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 3210 0 0113468999999952 1 47788888 999999998765432
Q ss_pred -----------HHHHHHH------hhcCC---CCCcccc-------------HH---HHHHhCCCCcHHHHHHHHHHHHH
Q 005480 406 -----------RTEILKV------HGSNK---KFDADVS-------------LD---VIAMRTPGFSGADLANLLNEAAI 449 (694)
Q Consensus 406 -----------R~~Il~~------~l~~~---~l~~dvd-------------l~---~lA~~t~G~sgadL~~lv~eAa~ 449 (694)
|.++.+. .+... .++..+. .. .-+....+.|.+....+++-|..
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2223221 11111 1111111 11 11223346899999999999999
Q ss_pred HHHHhCCcccCHHHHHHHHH
Q 005480 450 LAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 450 ~A~~~~~~~It~~di~~Ai~ 469 (694)
.|.-++.+.|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999974
No 153
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.28 E-value=1.3e-11 Score=140.98 Aligned_cols=212 Identities=22% Similarity=0.346 Sum_probs=126.9
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCCeeeee
Q 005480 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE-----------AGVPFFSIS 296 (694)
Q Consensus 228 ~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e-----------~~~pfi~vs 296 (694)
.+|++++|.+.+.+.+.+.+..+... +.+|||+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57999999999999999988765433 237999999999999999999765 478999999
Q ss_pred hhhHHHHH-----hhh------hh--HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc-
Q 005480 297 GSEFVEMF-----VGV------GA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD- 362 (694)
Q Consensus 297 ~s~~~~~~-----~G~------~~--~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld- 362 (694)
|+.+.+.. .|. ++ ..-..+|+.|.. ..||||||+.+ +...+..+..+|.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEM-----------PLPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhC-----------CHHHHHHHHhhhhcCeE
Confidence 98764321 221 11 012245666543 48999999999 3344445555554321
Q ss_pred -Cc----cCCCCeEEEEecCCc--cccchhhcCCCccce--eeeccCCCHHHHHH----HHHHhhcC----C--CCCccc
Q 005480 363 -GF----EGNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGSN----K--KFDADV 423 (694)
Q Consensus 363 -~~----~~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~l~~----~--~l~~dv 423 (694)
.. ....++.+|++||.. +.+....+|+..|++ .+.+.+|...+|.+ +++.++.+ . .+.++.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 431 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAAL 431 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 01 112357899999863 122222222222322 57888999999875 23333332 1 222211
Q ss_pred c------HHHHHH-hCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHH
Q 005480 424 S------LDVIAM-RTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (694)
Q Consensus 424 d------l~~lA~-~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di 464 (694)
- +..|.. ..+| +.++|++++++++..+.......|+.+++
T Consensus 432 ~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 432 RQGLQQCETLLLHYDWPG-NVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 0 011222 2343 56788888888877553222234555444
No 154
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.28 E-value=9.7e-12 Score=136.62 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=130.1
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCeeeeehhhHHHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVEM 303 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~---e~~~pfi~vs~s~~~~~ 303 (694)
...+.+|+|.+.+..++.+.++.....+. .|||.|.+||||..+||+|-. +.+.||++++|..+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 56789999999999999999998665543 799999999999999999965 45789999999988764
Q ss_pred Hh-----hhh-------hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh--hcCccC---
Q 005480 304 FV-----GVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE--MDGFEG--- 366 (694)
Q Consensus 304 ~~-----G~~-------~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~--ld~~~~--- 366 (694)
.. |.- ...-+.-|+.|.. ..||+|||..+ .-..+..+...|++ ++...+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCce
Confidence 32 110 0111234555533 48999999888 34455555555543 222222
Q ss_pred -CCCeEEEEecCCc--cccchhhcCCCccce--eeeccCCCHHHHHH--------HHHHhhcCCCC-----CccccHHHH
Q 005480 367 -NTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE--------ILKVHGSNKKF-----DADVSLDVI 428 (694)
Q Consensus 367 -~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~--------Il~~~l~~~~l-----~~dvdl~~l 428 (694)
+-+|.||||||+- +.+-..-+|...|.| ++.+.+|...+|.+ +++.+....+. +++. ++.+
T Consensus 355 ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A-l~~L 433 (550)
T COG3604 355 IKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA-LELL 433 (550)
T ss_pred eEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH-HHHH
Confidence 2368999999971 112122223333444 77888999999865 22222222222 2221 3444
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 005480 429 AMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 429 A~~t~G~sgadL~~lv~eAa~~A 451 (694)
....---+.++|+++++.|+..|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 43332235799999999999988
No 155
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.27 E-value=1.5e-11 Score=141.34 Aligned_cols=213 Identities=23% Similarity=0.337 Sum_probs=126.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~ 301 (694)
.+..+|++++|.+.+.+++.+.+..+... ..+|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34568999999999999999888776543 2379999999999999999998764 6799999998764
Q ss_pred HHHh-----hhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc----
Q 005480 302 EMFV-----GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---- 365 (694)
Q Consensus 302 ~~~~-----G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---- 365 (694)
+... |... ......|+.+ ...+|||||||.+ +...+..+..++..-. +.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~-~~~~~~ 324 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGE-FERVGG 324 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCc-EEECCC
Confidence 3221 1100 0001123333 2458999999999 3344444444443211 11
Q ss_pred ---CCCCeEEEEecCCc--cccchhhcCCCccce--eeeccCCCHHHHHH----HHHHhhcC----CCCCcccc---HHH
Q 005480 366 ---GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGSN----KKFDADVS---LDV 427 (694)
Q Consensus 366 ---~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~l~~----~~l~~dvd---l~~ 427 (694)
...++.+|++|+.. +.+....+++..|++ .+.+.+|...+|.+ +++.++.. ......++ +..
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 404 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 11257899988753 112222222222222 55777888877754 33333322 11111222 334
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 005480 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (694)
Q Consensus 428 lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~ 465 (694)
|....---+.++|+++++.|+..+ ....|+.+|+.
T Consensus 405 L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 405 LMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 444321235677888888777554 34578887764
No 156
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.25 E-value=1.6e-10 Score=121.81 Aligned_cols=218 Identities=21% Similarity=0.321 Sum_probs=137.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehh---
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS--- 298 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s--- 298 (694)
+.-+|++.+++.+..+-+.+.+|.. .++| ++||+|++|.|||++++.++... .+|++++.+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~-----~Rmp-~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR-----HRMP-NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc-----cCCC-ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 4558999999999988888888864 2333 69999999999999999998744 3688887653
Q ss_pred ---hHHHHH---hh-------hhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc
Q 005480 299 ---EFVEMF---VG-------VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE 365 (694)
Q Consensus 299 ---~~~~~~---~G-------~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~ 365 (694)
.|.... .| ...+.-.......+...+-+|+|||++.+.. +.... ++.+..+|+.+.+ .
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-------Gs~~~-qr~~Ln~LK~L~N-e 178 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-------GSYRK-QREFLNALKFLGN-E 178 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-------ccHHH-HHHHHHHHHHHhh-c
Confidence 222111 11 1112223334555667788999999999742 12223 3333334444421 2
Q ss_pred CCCCeEEEEecCCcc--ccchhhcCCCccceeeeccCCCH-HHHHHHHHHhhcCCCCCc--ccc----HHHHHHhCCCCc
Q 005480 366 GNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSNKKFDA--DVS----LDVIAMRTPGFS 436 (694)
Q Consensus 366 ~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr~I~i~~Pd~-~eR~~Il~~~l~~~~l~~--dvd----l~~lA~~t~G~s 436 (694)
-+-.++.+|+-.-.. .-|+.+-+ ||+. +.+|.-.. ++...++..+-...++.. ++. ...|-..+.|..
T Consensus 179 L~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 179 LQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred cCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 233455555433222 34677777 9963 34443322 234556666554444331 122 355667788876
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 437 GADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 437 gadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
+++.++++.|+..|++.|.+.||.+.++..
T Consensus 256 -G~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 256 -GELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred -HHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 589999999999999999999999988753
No 157
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.25 E-value=1.6e-10 Score=125.06 Aligned_cols=128 Identities=38% Similarity=0.496 Sum_probs=88.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH--HhhhhhHHHH------------HHHHHHHhcCCeEEEEcc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGVGASRVR------------DLFKKAKENAPCIVFVDE 331 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~--~~G~~~~~vr------------~lF~~A~~~aP~ILfIDE 331 (694)
++||.||||||||++|+++|...+.+|+.+.|...... ..|...-... -+|...+ +|+++||
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DE 120 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDE 120 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEec
Confidence 69999999999999999999999999999999865532 2222111110 0111111 4999999
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHhhhcC----------ccCCCCeEEEEecC-----CccccchhhcCCCccceee
Q 005480 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG----------FEGNTGIIVIAATN-----RADILDSALLRPGRFDRQV 396 (694)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~----------~~~~~~ViVIaaTN-----~p~~LD~aLlRpgRfdr~I 396 (694)
|+.. ... +.+.||..|+. +.-...++||+|+| ....+++|+++ ||...+
T Consensus 121 Inra-----------~p~---~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 121 INRA-----------PPE---VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred cccC-----------CHH---HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 9886 233 44455555543 33456789999999 45578999999 998899
Q ss_pred eccCCCHH-HHHHHHHHh
Q 005480 397 TVDVPDIR-GRTEILKVH 413 (694)
Q Consensus 397 ~i~~Pd~~-eR~~Il~~~ 413 (694)
.++.|+.+ +...++...
T Consensus 185 ~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 185 YVDYPDSEEEERIILARV 202 (329)
T ss_pred ecCCCCchHHHHHHHHhC
Confidence 99999544 444444443
No 158
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.25 E-value=2.6e-11 Score=138.47 Aligned_cols=214 Identities=23% Similarity=0.321 Sum_probs=130.4
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~~~~~ 303 (694)
..+|++++|.+.+.+.+.+.+..+... +.+|||+|++||||+++|++|... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 367999999999999999888765433 237999999999999999999764 4689999999876442
Q ss_pred H-----hhhh------h--HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Cc----
Q 005480 304 F-----VGVG------A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF---- 364 (694)
Q Consensus 304 ~-----~G~~------~--~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~---- 364 (694)
. .|.. + ..-..+|+.|.. ..||||||+.+ +...+..+..+|.+-. ..
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 2 2210 0 112345665543 48999999999 3444555555554321 01
Q ss_pred cCCCCeEEEEecCCc--cccchhhcCCCccce--eeeccCCCHHHHHH----HHHHhhcCC------CCCccccHHH---
Q 005480 365 EGNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGSNK------KFDADVSLDV--- 427 (694)
Q Consensus 365 ~~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~l~~~------~l~~dvdl~~--- 427 (694)
....++.+|++||.. +.+....+|+..|++ .+.+..|+..+|.+ +++.++.+. ++.++. +..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~~~~~ 422 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQVLAG 422 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HHHhHH
Confidence 112356899998763 223333333222333 57888999999875 233333221 122221 111
Q ss_pred ----HHH-hCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHH
Q 005480 428 ----IAM-RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (694)
Q Consensus 428 ----lA~-~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~ 466 (694)
|.. ..+| +-++|++++++++..+.......|+.+++..
T Consensus 423 ~~~~L~~y~WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 423 VADPLQRYPWPG-NVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHhCCCCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 222 2343 4678888888887765322234677777643
No 159
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=2.2e-10 Score=124.97 Aligned_cols=189 Identities=18% Similarity=0.212 Sum_probs=124.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------Ceeee---
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSI--- 295 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~-------pfi~v--- 295 (694)
.+..|++|+|++++++.+...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 456899999999999999988763 245668999999999999999999998754 21111
Q ss_pred -ehhhHHH---H----H--h-------------hhhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCCh
Q 005480 296 -SGSEFVE---M----F--V-------------GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGND 348 (694)
Q Consensus 296 -s~s~~~~---~----~--~-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~~~~~~ 348 (694)
.|..... . + + ..+...+|.+-+... .....|++|||+|.+
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------- 153 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------- 153 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-------------
Confidence 1111100 0 0 0 011234454443332 344579999999999
Q ss_pred hHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHH
Q 005480 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVI 428 (694)
Q Consensus 349 e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~l 428 (694)
.....|.||+.++.. ..+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++++.......+++ ..+..+
T Consensus 154 -~~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~~-~~~~~i 226 (351)
T PRK09112 154 -NRNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSDG-EITEAL 226 (351)
T ss_pred -CHHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCCH-HHHHHH
Confidence 233567788888753 3455666667888889899988 77 5899999999999999987543222222 225566
Q ss_pred HHhCCCCcHHHHHHHHHH
Q 005480 429 AMRTPGFSGADLANLLNE 446 (694)
Q Consensus 429 A~~t~G~sgadL~~lv~e 446 (694)
+..+.| +++...++++.
T Consensus 227 ~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHcCC-CHHHHHHHHhc
Confidence 666655 45544455443
No 160
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=5e-10 Score=116.91 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=117.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-Cee--e-----eehhhHHHHH---hhhh------hH---HHHHHH-HHHHhcCC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGV-PFF--S-----ISGSEFVEMF---VGVG------AS---RVRDLF-KKAKENAP 324 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~-pfi--~-----vs~s~~~~~~---~G~~------~~---~vr~lF-~~A~~~aP 324 (694)
-++|+||+|+|||++++.+++++.. .+. . .+..++.... .|.. .. .+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 222 1 1112222111 1211 01 122222 22335677
Q ss_pred eEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec--CCccccc----hhhcCCCccceeeec
Q 005480 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT--NRADILD----SALLRPGRFDRQVTV 398 (694)
Q Consensus 325 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT--N~p~~LD----~aLlRpgRfdr~I~i 398 (694)
++|+|||+|.+. ......+..+..... .....+.|+.+. +..+.+. ..+.+ |+...+++
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 899999999982 122223333322211 112223333322 2122221 12434 67778899
Q ss_pred cCCCHHHHHHHHHHhhcCCCC-----CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 005480 399 DVPDIRGRTEILKVHGSNKKF-----DADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (694)
Q Consensus 399 ~~Pd~~eR~~Il~~~l~~~~l-----~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v 471 (694)
++.+.++..+++...+...+. -.+..++.|...+.|. ++.|..+|+.+...|..++...|+.+++++++..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999887754321 1223478889999987 56699999999999999999999999999999864
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=1.7e-10 Score=139.34 Aligned_cols=198 Identities=23% Similarity=0.345 Sum_probs=126.8
Q ss_pred cccccchHHHHHHHHHHHHhc----CchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH
Q 005480 231 DDVAGVDEAKQDFMEVVEFLK----KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~----~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~ 303 (694)
..|+|++++.+.+.+.+...+ +|. ++...+||+||+|||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 579999999999998887632 221 223458999999999999999999976 579999999987542
Q ss_pred -----Hhhhhh-----HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc--c------
Q 005480 304 -----FVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E------ 365 (694)
Q Consensus 304 -----~~G~~~-----~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~------ 365 (694)
+.|... .....+.+..+....+|||||||+.+ +... .+.|+..++.- .
T Consensus 638 ~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v---~~~Ll~~l~~g~l~d~~g~~ 703 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDV---FNVLLQVLDDGRLTDGQGRT 703 (852)
T ss_pred chHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHH---HHHHHHHHhcCceecCCCeE
Confidence 222111 11123344445555689999999987 3333 44444444321 0
Q ss_pred -CCCCeEEEEecCCccc-------------------------cchhhcCCCccceeeeccCCCHHHHHHHHHHhhcC---
Q 005480 366 -GNTGIIVIAATNRADI-------------------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--- 416 (694)
Q Consensus 366 -~~~~ViVIaaTN~p~~-------------------------LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~--- 416 (694)
.-.+.+||+|||.... +.|.|+. |+|.++.+.+++.+...+|+...+..
T Consensus 704 vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~ 781 (852)
T TIGR03346 704 VDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRK 781 (852)
T ss_pred EecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHH
Confidence 1135789999997211 2245555 99999999999999999988766532
Q ss_pred ----CCCCcccc---HHHHHHhC--CCCcHHHHHHHHHHHHHHH
Q 005480 417 ----KKFDADVS---LDVIAMRT--PGFSGADLANLLNEAAILA 451 (694)
Q Consensus 417 ----~~l~~dvd---l~~lA~~t--~G~sgadL~~lv~eAa~~A 451 (694)
..+...++ .+.|+... +.+..+.|+++++......
T Consensus 782 ~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 782 RLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 11111111 34455542 2355667777766655433
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=2.1e-10 Score=138.32 Aligned_cols=163 Identities=23% Similarity=0.329 Sum_probs=110.2
Q ss_pred ccccccchHHHHHHHHHHHHhc----CchhhhhhcCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 005480 230 FDDVAGVDEAKQDFMEVVEFLK----KPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (694)
Q Consensus 230 f~dv~G~~e~k~~L~e~v~~l~----~p~~~~~lg~~~pr-gVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~ 301 (694)
++.|+|++++.+.+.+.+...+ +|. .|. .+||+||||||||++|+++|..+ +.+++.++|+++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~--------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPN--------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCC--------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 4578999999999998887643 232 233 58999999999999999999876 5689999999886
Q ss_pred HHH-----hhhh-----hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc--c----
Q 005480 302 EMF-----VGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E---- 365 (694)
Q Consensus 302 ~~~-----~G~~-----~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~---- 365 (694)
+.. .|.. ...-..+.+..+....++|+|||++.+ +... .+.|+..++.- .
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v---~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDV---FNILLQVLDDGRLTDGQG 704 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHH---HHHHHHHHhhCceecCCc
Confidence 532 2211 011111222333444489999999987 3333 44444444321 0
Q ss_pred ---CCCCeEEEEecCCcc-------------------------ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcC
Q 005480 366 ---GNTGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (694)
Q Consensus 366 ---~~~~ViVIaaTN~p~-------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~ 416 (694)
.-.+.+||+|||... .+.|+|+. |+|.++.+.+++.+...+|++.++..
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 112467889998621 23467776 99999999999999998888776643
No 163
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.22 E-value=4.1e-11 Score=140.68 Aligned_cols=215 Identities=18% Similarity=0.273 Sum_probs=128.0
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH-
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE- 302 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~- 302 (694)
..+|++++|.+.+.+++.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999999999888877765432 2369999999999999999997754 57999999987643
Q ss_pred ----HHhhhh----hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--CccC----CC
Q 005480 303 ----MFVGVG----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NT 368 (694)
Q Consensus 303 ----~~~G~~----~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~~----~~ 368 (694)
.+.|.. .......|+.| ...+||||||+.+ ....+..+..+|+.-. ...+ ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 222211 00011134333 2468999999998 3444555555553211 0011 12
Q ss_pred CeEEEEecCCcc--ccchhhcCCCccce--eeeccCCCHHHHHH----HHHHhhcC----CCCCcccc---HHHHHHhCC
Q 005480 369 GIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGSN----KKFDADVS---LDVIAMRTP 433 (694)
Q Consensus 369 ~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~l~~----~~l~~dvd---l~~lA~~t~ 433 (694)
++.+|+|||..- .+....+|+..|++ .+.+.+|...+|.+ +++.++.. ......++ +..|....=
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~W 536 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRW 536 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCC
Confidence 578999998631 22222233222222 67888999999864 22333221 11111222 334443331
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 434 G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
--+.++|+++++.|...+ ....|+.+|+...+
T Consensus 537 PGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 537 PGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 235677888888776543 34467777776544
No 164
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.22 E-value=6.2e-11 Score=128.31 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=112.6
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHH-----
Q 005480 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----- 304 (694)
Q Consensus 233 v~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~----- 304 (694)
++|.+.+.+.+.+.+..+... ..+|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 578888888888888765433 2379999999999999999996543 5799999998654321
Q ss_pred hhhh-------hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--C----ccCCCCeE
Q 005480 305 VGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--G----FEGNTGII 371 (694)
Q Consensus 305 ~G~~-------~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~----~~~~~~Vi 371 (694)
.|.. ......+|+.|. ..+|||||||.+ +...+..+..+|..-. . -....++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1210 011123455553 358999999999 3444555555554211 0 01134688
Q ss_pred EEEecCCc--c-----ccchhhcCCCccceeeeccCCCHHHHHH----HHHHhh----cCCCCC--cccc---HHHHHHh
Q 005480 372 VIAATNRA--D-----ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNKKFD--ADVS---LDVIAMR 431 (694)
Q Consensus 372 VIaaTN~p--~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----Il~~~l----~~~~l~--~dvd---l~~lA~~ 431 (694)
+|++||.. + .+.+.|+. |+. .+.|..|...+|.+ +++.++ .+.... ..++ +..|...
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 99999852 1 22233333 332 46788899888865 222322 211111 1233 3333333
Q ss_pred CCCCcHHHHHHHHHHHHHHH
Q 005480 432 TPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A 451 (694)
.---+.++|+++++.++..+
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchHHHHHHHHHHHHHhC
Confidence 21124567777777766554
No 165
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.21 E-value=1.2e-10 Score=125.97 Aligned_cols=194 Identities=22% Similarity=0.285 Sum_probs=116.4
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH--
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~-- 303 (694)
-|++++|.+...+.+.+.+..+... +.+|||+|++||||+++|+++-... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4788999999999999888775432 3379999999999999999996543 579999999876432
Q ss_pred ---Hhhhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc-------C
Q 005480 304 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-------G 366 (694)
Q Consensus 304 ---~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-------~ 366 (694)
+.|... ......|+.+. ...|||||||.+ ....+..+..++..-. +. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----------PMLVQEKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----------CHHHHHHHHHHHhcCc-EEeCCCCcee
Confidence 112110 01123344443 358999999999 3344445555554311 11 1
Q ss_pred CCCeEEEEecCCc-------cccchhhcCCCccceeeeccCCCHHHHHH----HHHHhh----cCCCCC--ccccHHH--
Q 005480 367 NTGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNKKFD--ADVSLDV-- 427 (694)
Q Consensus 367 ~~~ViVIaaTN~p-------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----Il~~~l----~~~~l~--~dvdl~~-- 427 (694)
+.++.||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ +++.++ .+.... ..++-+.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 2358889988752 123334443 442 46788888888865 333332 221111 1233333
Q ss_pred -HHHh-CCCCcHHHHHHHHHHHHHHH
Q 005480 428 -IAMR-TPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 428 -lA~~-t~G~sgadL~~lv~eAa~~A 451 (694)
|... .+ -+.++|+++++.|...+
T Consensus 216 ~L~~y~WP-GNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWP-GNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCC-cHHHHHHHHHHHHHHhc
Confidence 3322 23 24567777777766543
No 166
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.21 E-value=7.9e-11 Score=134.97 Aligned_cols=212 Identities=20% Similarity=0.298 Sum_probs=125.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~ 302 (694)
...+|++++|.+.+.+.+.+.+..+... ...|||+|++||||+++|+++-... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4578999999999988888777654332 2369999999999999999985543 57999999987654
Q ss_pred H-----Hhhhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Cc----
Q 005480 303 M-----FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF---- 364 (694)
Q Consensus 303 ~-----~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~---- 364 (694)
. +.|... .....+|+.|. ...|||||||.+ +...+..+..++..-. ..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCc
Confidence 2 122111 11123465553 358999999999 3445555555554311 01
Q ss_pred cCCCCeEEEEecCCc--cccchhhcCCCccce--eeeccCCCHHHHHHH--------HHHhhcCCCC-CccccHHHHHHh
Q 005480 365 EGNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEI--------LKVHGSNKKF-DADVSLDVIAMR 431 (694)
Q Consensus 365 ~~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~I--------l~~~l~~~~l-~~dvdl~~lA~~ 431 (694)
....++.||++|+.+ +.+....+|+..|++ .+.+..|..++|.+- ++.+..+... ...++.+.+...
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L 414 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 414 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 112357889888753 222222233322333 578889999888742 2222222221 112333333333
Q ss_pred CCC---CcHHHHHHHHHHHHHHHHHhCCcccCHHHH
Q 005480 432 TPG---FSGADLANLLNEAAILAGRRGKAAISSKEI 464 (694)
Q Consensus 432 t~G---~sgadL~~lv~eAa~~A~~~~~~~It~~di 464 (694)
... -+.++|++++..|...+ ....|+.+|+
T Consensus 415 ~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 415 TRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred hcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 222 24566777776666544 3446666664
No 167
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.21 E-value=1.6e-10 Score=132.15 Aligned_cols=224 Identities=18% Similarity=0.232 Sum_probs=131.3
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-eee---eehhhHHHHHhhh
Q 005480 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFS---ISGSEFVEMFVGV 307 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p-fi~---vs~s~~~~~~~G~ 307 (694)
+|.|.+.+|..+.-.+-.-..+..-.....+...+|||+|+||||||++|++++...... |.. .++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 578888887665433321111110001112233479999999999999999999876533 322 1222221100000
Q ss_pred ---hhHHH-HHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh------cCc--cCCCCeEEEEe
Q 005480 308 ---GASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAA 375 (694)
Q Consensus 308 ---~~~~v-r~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l------d~~--~~~~~ViVIaa 375 (694)
+...+ ...+..| ...+++|||+|.+ ....+..+.+.+.+- .|. .-+.++.||||
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa 349 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAA 349 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEE
Confidence 00000 0111122 2359999999998 223334444433210 111 11346899999
Q ss_pred cCCcc-------------ccchhhcCCCccceee-eccCCCHHHHHHHHHHhhcCCC-------------C---------
Q 005480 376 TNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEILKVHGSNKK-------------F--------- 419 (694)
Q Consensus 376 TN~p~-------------~LD~aLlRpgRfdr~I-~i~~Pd~~eR~~Il~~~l~~~~-------------l--------- 419 (694)
+|..+ .|++++++ |||..+ ..+.|+.+...+|.++.+.... +
T Consensus 350 ~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi 427 (509)
T smart00350 350 ANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYI 427 (509)
T ss_pred eCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHH
Confidence 99643 58999999 999854 5588999988888876432100 0
Q ss_pred -------Ccccc---HHHHH-----Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 005480 420 -------DADVS---LDVIA-----MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (694)
Q Consensus 420 -------~~dvd---l~~lA-----~~----------t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v 471 (694)
.+.++ .+.+. .+ ..+.|++.++.+++-|...|..+++..|+.+|+.+|+.=+
T Consensus 428 ~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 428 AYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 00111 11110 01 1256899999999999999999999999999999998744
No 168
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.20 E-value=5.1e-10 Score=125.05 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=126.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeeehh-hHHHHHhhhh
Q 005480 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS-EFVEMFVGVG 308 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s-~~~~~~~G~~ 308 (694)
.|+|.+++.+.+...+. ...+|||+||||||||++|++++...+. ||....+. .......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 46677776665544331 1237999999999999999999987643 56654443 1122222321
Q ss_pred -hHHH--HHHHHHHHhc---CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc--C-----C-CCeEEEE
Q 005480 309 -ASRV--RDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--G-----N-TGIIVIA 374 (694)
Q Consensus 309 -~~~v--r~lF~~A~~~---aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--~-----~-~~ViVIa 374 (694)
.... ..-|.....+ ...+||+|||..+ ...+.+.||..|..-. . . +..++++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 0110 1223222211 2348999999876 2335566666663211 0 0 1134455
Q ss_pred ecCCc-c--ccchhhcCCCccceeeeccCCC-HHHHHHHHHHhhcC--CCC--Ccccc----------------------
Q 005480 375 ATNRA-D--ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSN--KKF--DADVS---------------------- 424 (694)
Q Consensus 375 aTN~p-~--~LD~aLlRpgRfdr~I~i~~Pd-~~eR~~Il~~~l~~--~~l--~~dvd---------------------- 424 (694)
|||.. + ...++++. ||-..+.+++|+ .++..+++...... ... ..-++
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~e 230 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFE 230 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHH
Confidence 55742 2 23358888 997789999997 45557788654221 111 00010
Q ss_pred -HHHHHHh---C---CCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHcCc
Q 005480 425 -LDVIAMR---T---PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (694)
Q Consensus 425 -l~~lA~~---t---~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~~g~ 475 (694)
+..+... + ...|++--..+++-|...|...|+..|+.+|+. .+..+++..
T Consensus 231 yI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 231 LIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 1223321 2 237888888999999999999999999999999 666666654
No 169
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=5.1e-11 Score=130.33 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=129.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHH---h-cCCCeeeeehhhHH
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---E-AGVPFFSISGSEFV 301 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~---e-~~~pfi~vs~s~~~ 301 (694)
....+++++|.+...+++++.+..+... ..+||++|++||||+++|+++.. . .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~----------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPS----------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCC----------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3457999999999999999888763222 33799999999999999999943 3 47899999999887
Q ss_pred HHH-------------hhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh-----cC
Q 005480 302 EMF-------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-----DG 363 (694)
Q Consensus 302 ~~~-------------~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l-----d~ 363 (694)
+.. .| ....-..+|+.|..+ +||+|||+.+ ..+.+..+-.+|++- .+
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCC
Confidence 532 22 233345677777554 8999999998 345555555555542 11
Q ss_pred c-cCCCCeEEEEecCCccccchhhcC-CCccce--eeeccCCCHHHHHH--------HHHHhhcCCCCCcccc----HH-
Q 005480 364 F-EGNTGIIVIAATNRADILDSALLR-PGRFDR--QVTVDVPDIRGRTE--------ILKVHGSNKKFDADVS----LD- 426 (694)
Q Consensus 364 ~-~~~~~ViVIaaTN~p~~LD~aLlR-pgRfdr--~I~i~~Pd~~eR~~--------Il~~~l~~~~l~~dvd----l~- 426 (694)
- ....+|.+|+|||. .++.+++. ..-++| .+.|.+|+.++|.. +++.++++.......+ ..
T Consensus 208 ~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 208 SQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 1 12347999999974 22333322 112221 45778888888854 3334444444332222 22
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005480 427 VIAMRTPGFSGADLANLLNEAAILAGR 453 (694)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A~~ 453 (694)
.++...+| +.++|+|++..++..+..
T Consensus 286 L~~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 286 LLAYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 23334555 568999999999888743
No 170
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=3.7e-10 Score=123.77 Aligned_cols=185 Identities=17% Similarity=0.177 Sum_probs=123.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCee-----------
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF----------- 293 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi----------- 293 (694)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3566899999999999999987763 345668999999999999999999997632100
Q ss_pred ----e---eehhhHHH----------H-Hhh--------hhhHHHHHHHHHHH----hcCCeEEEEccccccccccCCCC
Q 005480 294 ----S---ISGSEFVE----------M-FVG--------VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGI 343 (694)
Q Consensus 294 ----~---vs~s~~~~----------~-~~G--------~~~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r~~~~ 343 (694)
- -+|..+.. . +.+ -....+|++-+.+. ...|.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 0 01111100 0 001 12244666655542 356789999999998
Q ss_pred CCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccc
Q 005480 344 GGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV 423 (694)
Q Consensus 344 ~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv 423 (694)
.....|.||+.++. ...+.++|.+|+.++.+.+.+++ |. ..+.+++|+.++-.+++....... .+.
T Consensus 154 ------~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~ 219 (365)
T PRK07471 154 ------NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL---PDD 219 (365)
T ss_pred ------CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC---CHH
Confidence 23467788888874 34556788889999999999887 66 578999999999999988764221 111
Q ss_pred cHHHHHHhCCCCcHHHHHHH
Q 005480 424 SLDVIAMRTPGFSGADLANL 443 (694)
Q Consensus 424 dl~~lA~~t~G~sgadL~~l 443 (694)
.+..++..+.|. +....++
T Consensus 220 ~~~~l~~~s~Gs-p~~Al~l 238 (365)
T PRK07471 220 PRAALAALAEGS-VGRALRL 238 (365)
T ss_pred HHHHHHHHcCCC-HHHHHHH
Confidence 234566666654 4433333
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.7e-11 Score=136.56 Aligned_cols=160 Identities=26% Similarity=0.363 Sum_probs=114.1
Q ss_pred cccccchHHHHHHHHHHHH----hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeeehhhHHHH
Q 005480 231 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 303 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~----l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~---~pfi~vs~s~~~~~ 303 (694)
..|+|++++...+.+.+.. +++|.+ |-..+||.||+|+|||-||+++|..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r-------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR-------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC-------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 6789999999999888865 444432 223578899999999999999999996 89999999999874
Q ss_pred ------------HhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC-----
Q 005480 304 ------------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG----- 366 (694)
Q Consensus 304 ------------~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~----- 366 (694)
|+|..+ =..+-+..+++..|||++|||+.- ...++|-||+.||.-.-
T Consensus 564 HsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA--------------HpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA--------------HPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc--------------CHHHHHHHHHHhcCCeeecCCC
Confidence 333322 123444556667799999999986 34577777777764211
Q ss_pred ----CCCeEEEEecCCcc----------------------------ccchhhcCCCccceeeeccCCCHHHHHHHHHHhh
Q 005480 367 ----NTGIIVIAATNRAD----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (694)
Q Consensus 367 ----~~~ViVIaaTN~p~----------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l 414 (694)
-.+.++|.|||--. ...|+++. |+|.+|.|.+.+.+...+|+...+
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 12579999998421 11234444 788888888888887777776655
Q ss_pred c
Q 005480 415 S 415 (694)
Q Consensus 415 ~ 415 (694)
.
T Consensus 706 ~ 706 (786)
T COG0542 706 N 706 (786)
T ss_pred H
Confidence 3
No 172
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.19 E-value=4.9e-10 Score=130.29 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=66.8
Q ss_pred CCeEEEEecCCc--cccchhhcCCCccc---eeeec--cCCC-HHHHHHHHHHh---hcCCCCCcccc---HHHHH---H
Q 005480 368 TGIIVIAATNRA--DILDSALLRPGRFD---RQVTV--DVPD-IRGRTEILKVH---GSNKKFDADVS---LDVIA---M 430 (694)
Q Consensus 368 ~~ViVIaaTN~p--~~LD~aLlRpgRfd---r~I~i--~~Pd-~~eR~~Il~~~---l~~~~l~~dvd---l~~lA---~ 430 (694)
.++.+|+++|.. ..+|+.|++ ||+ ..+.+ ..|+ .+.|.++.+.. +++.+..+.++ +..+. .
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 368899999964 578999999 998 55554 3354 44454444332 22221111222 22222 1
Q ss_pred hCC------CCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHH
Q 005480 431 RTP------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (694)
Q Consensus 431 ~t~------G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~ 472 (694)
+.. ..+.++|.+++++|...|..++...|+.+|+.+|++...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 145799999999999889888889999999999987543
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.19 E-value=4.3e-10 Score=135.39 Aligned_cols=162 Identities=24% Similarity=0.335 Sum_probs=113.0
Q ss_pred cccccchHHHHHHHHHHHHh----cCchhhhhhcCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 005480 231 DDVAGVDEAKQDFMEVVEFL----KKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l----~~p~~~~~lg~~~pr-gVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~ 302 (694)
+.|+|++++++.+.+.+... .+| ..|. .+||+||+|||||++|+++|..+ +.+++.+++++|.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~--------~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNP--------NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCC--------CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 67899999999998877642 222 2243 47999999999999999999987 46899999988754
Q ss_pred H-----Hhhhh-----hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc-------
Q 005480 303 M-----FVGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------- 365 (694)
Q Consensus 303 ~-----~~G~~-----~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~------- 365 (694)
. +.|.. ......+.+..+....+||+|||+|.+ +. ...+.|+..++.-.
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~---~v~~~Llq~le~g~~~d~~g~ 646 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HP---DIFNLLLQILDDGRLTDSKGR 646 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CH---HHHHHHHHHhccCceecCCCc
Confidence 2 22221 111234555556666689999999987 22 34555555555311
Q ss_pred --CCCCeEEEEecCCccc-------------------------------------cchhhcCCCccceeeeccCCCHHHH
Q 005480 366 --GNTGIIVIAATNRADI-------------------------------------LDSALLRPGRFDRQVTVDVPDIRGR 406 (694)
Q Consensus 366 --~~~~ViVIaaTN~p~~-------------------------------------LD~aLlRpgRfdr~I~i~~Pd~~eR 406 (694)
.-.+.+||.|||.... +.|.++. |+|.+|.|.+.+.++.
T Consensus 647 ~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l 724 (821)
T CHL00095 647 TIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDV 724 (821)
T ss_pred EEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHH
Confidence 1246899999985311 1244555 8999999999999999
Q ss_pred HHHHHHhhcC
Q 005480 407 TEILKVHGSN 416 (694)
Q Consensus 407 ~~Il~~~l~~ 416 (694)
.+|++..+.+
T Consensus 725 ~~Iv~~~l~~ 734 (821)
T CHL00095 725 WEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHH
Confidence 9998876643
No 174
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.18 E-value=8e-10 Score=114.23 Aligned_cols=131 Identities=24% Similarity=0.329 Sum_probs=91.1
Q ss_pred CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC-------------ccccchhhcCC
Q 005480 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-------------ADILDSALLRP 389 (694)
Q Consensus 323 aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-------------p~~LD~aLlRp 389 (694)
-|.+|||||++.| +-+.-..++ ..++ ++-.-+||.|||+ |.-+++.++.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~---kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLH---KALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHH---HHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 4899999999998 223333333 3333 2333467777775 4556666666
Q ss_pred CccceeeeccCCCHHHHHHHHHHhhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 390 GRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 390 gRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
|+ ..|..-+.+.++-++|++.......+.-+ ..+..++.....-|-+-..+|+.-|...|...|+..|..+|++++-
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 54 35666677888899999998876665433 2366677666556667777888888899999999999999999987
Q ss_pred HHHHc
Q 005480 469 DRIVA 473 (694)
Q Consensus 469 ~~v~~ 473 (694)
+-.+.
T Consensus 436 ~Lf~D 440 (456)
T KOG1942|consen 436 ELFLD 440 (456)
T ss_pred HHHHh
Confidence 65443
No 175
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.17 E-value=4.1e-10 Score=111.94 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=98.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-------ee-eeehhhHHHH---------H--hhhhhHHHHHHHHHHHh-
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FF-SISGSEFVEM---------F--VGVGASRVRDLFKKAKE- 321 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~p-------fi-~vs~s~~~~~---------~--~G~~~~~vr~lF~~A~~- 321 (694)
+.|..+||+||+|+|||++|++++..+... .. ..+|..+... . ...+...++++.+.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 456789999999999999999999987432 00 0011111000 0 01123456666666543
Q ss_pred ---cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeec
Q 005480 322 ---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 398 (694)
Q Consensus 322 ---~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i 398 (694)
....||+|||+|.+. ....+.||..|+.. ....++|.+||.++.+.+++.+ |. ..+.+
T Consensus 92 ~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMN--------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred cccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 345699999999982 23456778877753 3455666677778999999998 66 47999
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCC
Q 005480 399 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (694)
Q Consensus 399 ~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G 434 (694)
++|+.++..++++.. +++ +..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999999999999876 233 2335666666654
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.16 E-value=2.3e-10 Score=104.51 Aligned_cols=126 Identities=34% Similarity=0.504 Sum_probs=83.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC---eeeeehhhHHHH--------------HhhhhhHHHHHHHHHHHhcCCeE
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEFVEM--------------FVGVGASRVRDLFKKAKENAPCI 326 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~p---fi~vs~s~~~~~--------------~~G~~~~~vr~lF~~A~~~aP~I 326 (694)
+..++|+||||||||++++.+|..+..+ +++++++..... .........+.+++.++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3479999999999999999999999775 888887755432 11234556778888888887899
Q ss_pred EEEccccccccccCCCCCCCChhHHHHHHHH--HhhhcCccCCCCeEEEEecCC-ccccchhhcCCCccceeeeccCC
Q 005480 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQL--LTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVP 401 (694)
Q Consensus 327 LfIDEID~l~~~r~~~~~~~~~e~~~~l~~L--L~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i~~P 401 (694)
|+|||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999984322 11111100 000111123456788888886 3334444444 88888877654
No 177
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=5.3e-10 Score=120.19 Aligned_cols=170 Identities=15% Similarity=0.269 Sum_probs=117.0
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------eeeeehhhH
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSEF 300 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p--------fi~vs~s~~ 300 (694)
+|+||+|++.+++.+.+.+.. .+.|+.+||+||+|+|||++|+++|..+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999998887742 2456689999999999999999999976332 22222100
Q ss_pred HHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 301 VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
. ...+...+|++.+.+.. ....|++||++|.+ .....|.||+.++. +..++++|.+|
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m--------------~~~a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM--------------TEQAQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEEe
Confidence 0 01123456666664432 33469999999998 23457788888885 44566666677
Q ss_pred CCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCC
Q 005480 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (694)
Q Consensus 377 N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~ 435 (694)
+.++.+-|.+++ |. ..+.++.|+.++....++..... .+ +.....++..+.|.
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~ 183 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGI 183 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCC
Confidence 888999999998 55 47899999999888888765432 21 22245566666554
No 178
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.15 E-value=6.6e-10 Score=128.92 Aligned_cols=186 Identities=23% Similarity=0.341 Sum_probs=123.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--CCeeeeehhhHHHHHhhhhhHHHHH------------HHHHHHhcCCeEEEEcc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRD------------LFKKAKENAPCIVFVDE 331 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~--~pfi~vs~s~~~~~~~G~~~~~vr~------------lF~~A~~~aP~ILfIDE 331 (694)
||||.|+||||||++|++++.... .||+.+.++...+...|.. .+.. ++.+| ...+|||||
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 799999999999999999999764 4788887643333333331 0111 11111 125999999
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHhhhcCcc-----------CCCCeEEEEecCCcc---ccchhhcCCCccceeee
Q 005480 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD---ILDSALLRPGRFDRQVT 397 (694)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~p~---~LD~aLlRpgRfdr~I~ 397 (694)
|+.+ ... +.+.|+..|+.-. ...++.||+++|..+ .+.++|+. ||+.++.
T Consensus 93 i~rl-----------~~~---~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 93 ANLL-----------DDG---LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred hhhC-----------CHH---HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 9998 223 4444555553211 124689999999765 78899999 9998877
Q ss_pred cc-CCCHHHHHHHHHHhhcCC-------------------------CCCccccHHHHHHh--CCCCc-HHHHHHHHHHHH
Q 005480 398 VD-VPDIRGRTEILKVHGSNK-------------------------KFDADVSLDVIAMR--TPGFS-GADLANLLNEAA 448 (694)
Q Consensus 398 i~-~Pd~~eR~~Il~~~l~~~-------------------------~l~~dvdl~~lA~~--t~G~s-gadL~~lv~eAa 448 (694)
+. .|+.++|.+|++.+.... .+.++ .+..++.. ..|.+ .+.-..+++-|.
T Consensus 157 ~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~Ar 235 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAK 235 (589)
T ss_pred cCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 75 567788899887754211 11111 12222221 12333 445557889999
Q ss_pred HHHHHhCCcccCHHHHHHHHHHHHc
Q 005480 449 ILAGRRGKAAISSKEIDDSIDRIVA 473 (694)
Q Consensus 449 ~~A~~~~~~~It~~di~~Ai~~v~~ 473 (694)
..|..+|+..|+.+|+..|+.-++.
T Consensus 236 A~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 236 AHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999987763
No 179
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.14 E-value=1.7e-10 Score=131.97 Aligned_cols=199 Identities=24% Similarity=0.295 Sum_probs=121.8
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHHH-
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF- 304 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~~~~~~- 304 (694)
++.+++|.+...+.+.+.+..+... +.+|||+|++||||+++|++|... .+.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999999999988875443 337999999999999999999775 46899999998775421
Q ss_pred ----hhhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Cc----cCC
Q 005480 305 ----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGN 367 (694)
Q Consensus 305 ----~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~----~~~ 367 (694)
.|... ......|+.|. ...|||||||.+ ..+.+..+..++..-. .. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 22100 01122455543 358999999999 3344444444444211 00 112
Q ss_pred CCeEEEEecCCcc--ccchhhcCCCccce--eeeccCCCHHHHHH----HHHHhhc----CCC-CCcccc---HHHHHHh
Q 005480 368 TGIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGS----NKK-FDADVS---LDVIAMR 431 (694)
Q Consensus 368 ~~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~l~----~~~-l~~dvd---l~~lA~~ 431 (694)
.++.+|++||..- .+....+++..|++ .+.|.+|...+|.+ ++++++. +.. ....++ +..|...
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y 400 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY 400 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 3688999998631 12222222222222 56788999999865 2222222 111 111222 3333333
Q ss_pred -CCCCcHHHHHHHHHHHHHHHH
Q 005480 432 -TPGFSGADLANLLNEAAILAG 452 (694)
Q Consensus 432 -t~G~sgadL~~lv~eAa~~A~ 452 (694)
.+ -+.++|+++++.|+..+.
T Consensus 401 ~WP-GNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 401 DWP-GNVRELEHVISRAALLAR 421 (509)
T ss_pred CCC-CcHHHHHHHHHHHHHhcC
Confidence 34 356889999999888774
No 180
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.13 E-value=4.9e-10 Score=132.67 Aligned_cols=199 Identities=25% Similarity=0.393 Sum_probs=121.7
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~ 303 (694)
+.+|++++|.+.+.+.+.+.+..+... +.+|||+|++|||||++|++|.... +.||+.++|..+.+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 467999999999999999888765433 2379999999999999999997644 679999999876432
Q ss_pred -----Hhhhh-------hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Cc----c
Q 005480 304 -----FVGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----E 365 (694)
Q Consensus 304 -----~~G~~-------~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~----~ 365 (694)
+.|.. .......|+.+. ..+||||||+.+ ....+..+..++..-. .. .
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 12210 011223455443 358999999998 3344444444543311 00 1
Q ss_pred CCCCeEEEEecCCc--cccchhhcCCCccce--eeeccCCCHHHHHH----HHHHhhcC----CC-----CCccccHHHH
Q 005480 366 GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGSN----KK-----FDADVSLDVI 428 (694)
Q Consensus 366 ~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~l~~----~~-----l~~dvdl~~l 428 (694)
...++.+|++|+.. +.+....+++..|.+ .+.|..|...+|.+ +++.++.+ .+ +.++ .+..|
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~-al~~L 586 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE-TLRTL 586 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHHH
Confidence 12468899999863 222333333222323 57789999999876 23333221 11 2222 13333
Q ss_pred HHh-CCCCcHHHHHHHHHHHHHHH
Q 005480 429 AMR-TPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 429 A~~-t~G~sgadL~~lv~eAa~~A 451 (694)
... .+| +.++|+++++.|+..+
T Consensus 587 ~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHhC
Confidence 332 333 5678888888887654
No 181
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.13 E-value=1.2e-09 Score=124.45 Aligned_cols=214 Identities=23% Similarity=0.322 Sum_probs=136.0
Q ss_pred cccccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhh----hh--------------c----CCCC-ceEEEEcCC
Q 005480 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFT----AI--------------G----ARIP-KGVLLVGPP 273 (694)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~----~l--------------g----~~~p-rgVLL~GPp 273 (694)
-.++|+++..+..|.|+.|-+..-..+.-.+... ++-.|. ++ + -+++ |-+||+|||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 4569999999999999999988776555433221 000111 11 1 1222 468999999
Q ss_pred CChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHH--------hcCCeEEEEccccccccccCCCCCC
Q 005480 274 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK--------ENAPCIVFVDEIDAVGRQRGTGIGG 345 (694)
Q Consensus 274 GTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~--------~~aP~ILfIDEID~l~~~r~~~~~~ 345 (694)
|-|||+||+.+|+.+|..++.+++|+-.. +..++.....|. ...|..|+|||||--
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------- 399 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------- 399 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC----------
Confidence 99999999999999999999999987432 233333333332 246878889999874
Q ss_pred CChhHHHHHHHHHhh----hcCccCC---------C---CeEEEEecCCccccchhhcCCC-ccceeeeccCCCHHHHHH
Q 005480 346 GNDEREQTLNQLLTE----MDGFEGN---------T---GIIVIAATNRADILDSALLRPG-RFDRQVTVDVPDIRGRTE 408 (694)
Q Consensus 346 ~~~e~~~~l~~LL~~----ld~~~~~---------~---~ViVIaaTN~p~~LD~aLlRpg-Rfdr~I~i~~Pd~~eR~~ 408 (694)
....-.++..++.. ..|-... . .--|||.+|.... |+|+ |- -|-.+|.|.+|...-..+
T Consensus 400 -~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR-~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 400 -PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALR-PLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred -cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhh-hcccceEEEEecCCChhHHHH
Confidence 11222233333321 1111110 0 1357777886443 4443 22 367789999998887777
Q ss_pred HHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005480 409 ILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (694)
Q Consensus 409 Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~ 454 (694)
=|+..+.+.++..+ ...|...++ ++-.||++++|.-..+|...
T Consensus 476 RL~~IC~rE~mr~d--~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 476 RLNEICHRENMRAD--SKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHHHhhhcCCCC--HHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 77777766665433 455555555 44579999999998888653
No 182
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.11 E-value=7.2e-11 Score=118.54 Aligned_cols=142 Identities=28% Similarity=0.423 Sum_probs=68.0
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-------------------- 288 (694)
+|+||+|++.+|..+.-... | .+++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998876554 1 2489999999999999999998743
Q ss_pred --------CCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh
Q 005480 289 --------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (694)
Q Consensus 289 --------~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (694)
..||....-+.-....+|.+....-..+..|- ..|||+||+-.+ ...++..|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc--------------CHHHHHHHHHH
Confidence 12333322222122223332211111222222 259999999887 34566666666
Q ss_pred hcCc-----------cCCCCeEEEEecCCc-----------------------cccchhhcCCCccceeeeccCCCH
Q 005480 361 MDGF-----------EGNTGIIVIAATNRA-----------------------DILDSALLRPGRFDRQVTVDVPDI 403 (694)
Q Consensus 361 ld~~-----------~~~~~ViVIaaTN~p-----------------------~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (694)
|+.- .-..++++|+|+|.- ..+...++. |||.++.++..+.
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 6421 123368999999851 134445555 7776666665544
No 183
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.11 E-value=1.6e-09 Score=116.46 Aligned_cols=66 Identities=45% Similarity=0.704 Sum_probs=52.8
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCeeeeehhhHH
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFV 301 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~--~pfi~vs~s~~~ 301 (694)
..+.++|+.++.+..--+++.++..+. ..+++||.||||||||.||-++|.++| +||..++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 467999999999999988888876542 346899999999999999999999996 899999998874
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.1e-09 Score=126.92 Aligned_cols=259 Identities=13% Similarity=0.147 Sum_probs=144.7
Q ss_pred ccccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee-e
Q 005480 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-S 296 (694)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v-s 296 (694)
...+.++..+.+++||+|.++..++++..+.....+ ....+.++|+||||||||++++.+|++++..++.. +
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n 143 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN 143 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh
Confidence 356788899999999999999999888877653322 12233599999999999999999999988765441 1
Q ss_pred ---hhhHH----------HHH--hhhhhHHHHHHHHHHHh----------cCCeEEEEccccccccccCCCCCCCChhHH
Q 005480 297 ---GSEFV----------EMF--VGVGASRVRDLFKKAKE----------NAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (694)
Q Consensus 297 ---~s~~~----------~~~--~G~~~~~vr~lF~~A~~----------~aP~ILfIDEID~l~~~r~~~~~~~~~e~~ 351 (694)
|.... ..+ .......++.++..+.. ....|||||||+.+.. + ..
T Consensus 144 pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~-r----------~~ 212 (637)
T TIGR00602 144 PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY-R----------DT 212 (637)
T ss_pred hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-h----------hH
Confidence 11000 000 01122334555555532 3457999999998742 1 11
Q ss_pred HHHHHHHh-hhcCccCCCCeEEEEecC-Ccc--------------ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc
Q 005480 352 QTLNQLLT-EMDGFEGNTGIIVIAATN-RAD--------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 352 ~~l~~LL~-~ld~~~~~~~ViVIaaTN-~p~--------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
..+..+|. ... ....+.+|++++ .+. .|.+++++..|. .+|.|.+.......+.|+..+.
T Consensus 213 ~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 213 RALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred HHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHH
Confidence 23334443 111 122333443333 111 133677743344 3789999999986666666554
Q ss_pred CCC--------CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-------hCCcccCHHHHHHHHHHHHcCcC--Cc
Q 005480 416 NKK--------FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR-------RGKAAISSKEIDDSIDRIVAGME--GT 478 (694)
Q Consensus 416 ~~~--------l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~-------~~~~~It~~di~~Ai~~v~~g~~--~~ 478 (694)
... +.....+..|+.. +.+|++.+++.-...+.+ .+...++..++..+..+...-.. ..
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~ 364 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQ 364 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHH
Confidence 321 1112235566663 456788777766655432 23345555555544433211000 00
Q ss_pred c--cccCCcchhhhHHHHHHHHHHhh
Q 005480 479 V--MTDGKSKSLVAYHEVGHAICGTL 502 (694)
Q Consensus 479 ~--~~~~~~~~~va~hEaGhAvv~~~ 502 (694)
. .....+..+..+|-.|..|....
T Consensus 365 ~l~~~~~rd~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 365 EIQALGGKDVSLFLFRALGKILYCKR 390 (637)
T ss_pred HHHhhccccchhHHHHHhChhhcccc
Confidence 0 11223444567777777776543
No 185
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.10 E-value=2.5e-11 Score=114.39 Aligned_cols=113 Identities=35% Similarity=0.416 Sum_probs=71.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH--HHhhhhhHH------HHHHHHHHHhcCCeEEEEcccccccc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGVGASR------VRDLFKKAKENAPCIVFVDEIDAVGR 337 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~--~~~G~~~~~------vr~lF~~A~~~aP~ILfIDEID~l~~ 337 (694)
+|+|+||||||||++|+.+|..++.+++.++++...+ .+.|.-.-. ....+-.+. ..++|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 5899999999999999999999999999999876543 222211100 000011111 14689999999987
Q ss_pred ccCCCCCCCChhHHHHHHHHHhhhcCc-------c-CCC------CeEEEEecCCcc----ccchhhcCCCcc
Q 005480 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-------E-GNT------GIIVIAATNRAD----ILDSALLRPGRF 392 (694)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~~-------~-~~~------~ViVIaaTN~p~----~LD~aLlRpgRf 392 (694)
+.+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 344445555555431100 0 111 489999999988 89999999 87
No 186
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=4.5e-09 Score=106.48 Aligned_cols=168 Identities=22% Similarity=0.342 Sum_probs=120.7
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
....+.+.+++|++.+++.|.+....+... .+..+|||+|..|||||+|+||+-++. +..++.++-+++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 445689999999999999988766654322 345689999999999999999997765 677899988876
Q ss_pred HHHHhhhhhHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc--CCCCeEEEEecC
Q 005480 301 VEMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATN 377 (694)
Q Consensus 301 ~~~~~G~~~~~vr~lF~~A~~~-aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--~~~~ViVIaaTN 377 (694)
.. +-.+++..+.. .+-|||+|++-- ++.+.....|-..|||-- ...+|+|.||+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF-------------EEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC-------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 54 44556655542 346999998622 112223344445555532 245899999999
Q ss_pred Cccccchh--------------------hcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCc
Q 005480 378 RADILDSA--------------------LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA 421 (694)
Q Consensus 378 ~p~~LD~a--------------------LlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~ 421 (694)
+.+.|+.. +-=+.||...+.|.+++.++-..|+..++...+++-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 86544421 112349999999999999999999999998777653
No 187
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.10 E-value=1.4e-09 Score=123.12 Aligned_cols=209 Identities=24% Similarity=0.315 Sum_probs=128.4
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 005480 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------------------ 289 (694)
Q Consensus 228 ~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~------------------ 289 (694)
.+|.++.|+..+++.+.-.+ .....++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 48899999888776543111 1234799999999999999999987431
Q ss_pred ----------CCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHh
Q 005480 290 ----------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (694)
Q Consensus 290 ----------~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~ 359 (694)
.||.....+.-....+|.+...-...+..|.. .+|||||++.+ +.. ++..|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~---~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERR---TLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHH---HHHHHHH
Confidence 12211111111112334332222345666644 49999999887 223 3344444
Q ss_pred hhcCc-----------cCCCCeEEEEecCCcc---------------------ccchhhcCCCccceeeeccCCCHHH--
Q 005480 360 EMDGF-----------EGNTGIIVIAATNRAD---------------------ILDSALLRPGRFDRQVTVDVPDIRG-- 405 (694)
Q Consensus 360 ~ld~~-----------~~~~~ViVIaaTN~p~---------------------~LD~aLlRpgRfdr~I~i~~Pd~~e-- 405 (694)
.|+.- ....++.+|+|+|... .+..++++ |||.++.++.|+.++
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh
Confidence 34221 1234689999999742 47778888 999999999885321
Q ss_pred --------HHHHHHHh--------hcCCCCCcccc-------------H-H--HHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005480 406 --------RTEILKVH--------GSNKKFDADVS-------------L-D--VIAMRTPGFSGADLANLLNEAAILAGR 453 (694)
Q Consensus 406 --------R~~Il~~~--------l~~~~l~~dvd-------------l-~--~lA~~t~G~sgadL~~lv~eAa~~A~~ 453 (694)
...+-+.. .++..+...+. . . .-+....|.|.+....+++-|...|.-
T Consensus 395 ~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 395 KTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred cccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 11111100 00001011110 0 1 112234578999999999999999999
Q ss_pred hCCcccCHHHHHHHHH
Q 005480 454 RGKAAISSKEIDDSID 469 (694)
Q Consensus 454 ~~~~~It~~di~~Ai~ 469 (694)
+|++.|+.+|+.+|+.
T Consensus 475 ~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 475 DQSDIITRQHLQEAVS 490 (506)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9999999999999986
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.9e-09 Score=118.77 Aligned_cols=159 Identities=26% Similarity=0.367 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee-ehhhHHHHHhhhhhHHHHHHHHHHH
Q 005480 242 DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASRVRDLFKKAK 320 (694)
Q Consensus 242 ~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v-s~s~~~~~~~G~~~~~vr~lF~~A~ 320 (694)
+-..++...++++++ +-..+||+||||+|||.||..+|...+.||+.+ |..+.+..-.......++..|+.|+
T Consensus 522 ~G~llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 522 DGKLLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred hHHHHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhh
Confidence 333455556666542 234799999999999999999999999999985 4445444333334456899999999
Q ss_pred hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCC-CeEEEEecCCccccch-hhcCCCccceeeec
Q 005480 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDS-ALLRPGRFDRQVTV 398 (694)
Q Consensus 321 ~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~-~ViVIaaTN~p~~LD~-aLlRpgRfdr~I~i 398 (694)
+..-+||++|+|+.|..--. -+....+-++..|+..+....+.. +.+|++||.+.+.|.. .++. .|+..+.+
T Consensus 596 kS~lsiivvDdiErLiD~vp----IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~V 669 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVP----IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHV 669 (744)
T ss_pred cCcceEEEEcchhhhhcccc----cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeec
Confidence 98889999999999864322 245556667777777776655543 5777888877666543 3445 78888888
Q ss_pred cCCCH-HHHHHHHHH
Q 005480 399 DVPDI-RGRTEILKV 412 (694)
Q Consensus 399 ~~Pd~-~eR~~Il~~ 412 (694)
|.-.. ++..+++..
T Consensus 670 pnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEE 684 (744)
T ss_pred CccCchHHHHHHHHH
Confidence 76654 455555543
No 189
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.07 E-value=1.2e-09 Score=121.12 Aligned_cols=141 Identities=24% Similarity=0.436 Sum_probs=88.9
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------eeeee----hh
Q 005480 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSIS----GS 298 (694)
Q Consensus 230 f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p-------fi~vs----~s 298 (694)
++++.+.++..+.+...+. . .++++|+||||||||++|+.+|..+... ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L~---~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---I-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---c-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6777777766665544432 2 3479999999999999999999887421 22222 23
Q ss_pred hHHHHH--hhhhhH----HHHHHHHHHHhc--CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh---------
Q 005480 299 EFVEMF--VGVGAS----RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--------- 361 (694)
Q Consensus 299 ~~~~~~--~G~~~~----~vr~lF~~A~~~--aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l--------- 361 (694)
+++..+ .+.+.. .+.++...|+.. .|++||||||+.....+ .+..++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 444332 111111 234455666543 58999999999863222 122222211
Q ss_pred -----------cCccCCCCeEEEEecCCcc----ccchhhcCCCccceeeeccC
Q 005480 362 -----------DGFEGNTGIIVIAATNRAD----ILDSALLRPGRFDRQVTVDV 400 (694)
Q Consensus 362 -----------d~~~~~~~ViVIaaTN~p~----~LD~aLlRpgRfdr~I~i~~ 400 (694)
+.+....++.||||+|..+ .+|.|++| ||. .|++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2355567899999999877 89999999 995 456654
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=4.9e-09 Score=112.06 Aligned_cols=145 Identities=25% Similarity=0.350 Sum_probs=98.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--------------------- 289 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~--------------------- 289 (694)
++++|.+++...+...+..-. +.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 356777777777766554221 3455799999999999999999999886
Q ss_pred ---CCeeeeehhhHHHHHhhhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc
Q 005480 290 ---VPFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (694)
Q Consensus 290 ---~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (694)
-.|+.++.++-... ......++++-+.... ...-|++|||+|.+ .....|.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m--------------t~~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL--------------TEDAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH--------------hHHHHHHHHHHhc
Confidence 24555555443221 1123445555444432 23579999999999 2356788888887
Q ss_pred CccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHH
Q 005480 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 406 (694)
Q Consensus 363 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR 406 (694)
. +..+..+|.+||.++.+-+.+.+ |. ..+.|++|+...+
T Consensus 135 e--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~ 173 (325)
T COG0470 135 E--PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEA 173 (325)
T ss_pred c--CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHH
Confidence 4 45567888889999999998888 54 3567766554433
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.03 E-value=9.5e-10 Score=107.94 Aligned_cols=122 Identities=28% Similarity=0.410 Sum_probs=80.8
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH-----H
Q 005480 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-----F 304 (694)
Q Consensus 233 v~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~-----~ 304 (694)
|+|.+.+.+++.+.+..+... |.+|||+|++||||+++|++|-+.. +.||+.++|+.+.+. +
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578889999888888765433 3489999999999999999997754 679999999877543 2
Q ss_pred hhhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Cc----cCCCCeE
Q 005480 305 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGNTGII 371 (694)
Q Consensus 305 ~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~----~~~~~Vi 371 (694)
.|... .....+|+.|... +||||||+.+ ....+..+.++|+.-. .. ....++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 33211 1123678877655 8999999999 3455555656665321 01 1123789
Q ss_pred EEEecCC
Q 005480 372 VIAATNR 378 (694)
Q Consensus 372 VIaaTN~ 378 (694)
+|++|+.
T Consensus 137 iI~st~~ 143 (168)
T PF00158_consen 137 IIASTSK 143 (168)
T ss_dssp EEEEESS
T ss_pred EEeecCc
Confidence 9999986
No 192
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.8e-10 Score=122.33 Aligned_cols=210 Identities=26% Similarity=0.351 Sum_probs=125.0
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC-----------------
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG----------------- 289 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~----------------- 289 (694)
..+|.||.|++.+|..+.....- .+++|++||||||||++|+-+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 46899999999999988765532 23799999999999999999866320
Q ss_pred ------------CCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHH
Q 005480 290 ------------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (694)
Q Consensus 290 ------------~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~L 357 (694)
.||..-.-+.-....+|.+..-.-.-...| ...||||||+-.+ ..++++.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh--------------hHHHHHHH
Confidence 111111111111111222100000000111 1269999998776 33677777
Q ss_pred HhhhcCc-----------cCCCCeEEEEecCCc-----------------------cccchhhcCCCccceeeeccCCCH
Q 005480 358 LTEMDGF-----------EGNTGIIVIAATNRA-----------------------DILDSALLRPGRFDRQVTVDVPDI 403 (694)
Q Consensus 358 L~~ld~~-----------~~~~~ViVIaaTN~p-----------------------~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (694)
.+=|+.- .-..++.+|+|+|.. ..|...+++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 7666532 112357888999851 234556677 9999999988774
Q ss_pred HHH--------------HHHHHHh----hcCCCC--Cc----------------cccHHHHHHhCCCCcHHHHHHHHHHH
Q 005480 404 RGR--------------TEILKVH----GSNKKF--DA----------------DVSLDVIAMRTPGFSGADLANLLNEA 447 (694)
Q Consensus 404 ~eR--------------~~Il~~~----l~~~~l--~~----------------dvdl~~lA~~t~G~sgadL~~lv~eA 447 (694)
.++ ..+.+.+ .+..+. +. +.++-..+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 433 1122111 111111 11 11222334445567888888888888
Q ss_pred HHHHHHhCCcccCHHHHHHHHH
Q 005480 448 AILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 448 a~~A~~~~~~~It~~di~~Ai~ 469 (694)
..+|--.+...|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 8888888888888888888875
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.1e-10 Score=116.02 Aligned_cols=132 Identities=27% Similarity=0.434 Sum_probs=86.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhh----hcCCCC-ceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-HH
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTA----IGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MF 304 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~----lg~~~p-rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~-~~ 304 (694)
+-|+|++.+|+.|.-.|- .+.++... -..... .+|||.||.|||||+||+.+|+.+++||...++..+.+ .|
T Consensus 61 ~YVIGQe~AKKvLsVAVY--NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVY--NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred hheecchhhhceeeeeeh--hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 457899999987754332 11111111 012222 36999999999999999999999999999999999886 58
Q ss_pred hhhhhHHH-HHHHHHH----HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc
Q 005480 305 VGVGASRV-RDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (694)
Q Consensus 305 ~G~~~~~v-r~lF~~A----~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (694)
+|+...++ ..++..| .+....||+|||||.+.++....+-.-+-..+-+...||+.++|-
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 88765543 3444443 122346999999999987664332111122234555677777764
No 194
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=3.9e-09 Score=113.59 Aligned_cols=183 Identities=14% Similarity=0.209 Sum_probs=122.5
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 291 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p----------------- 291 (694)
.|++|+|++++++.+.+.+..- +.|..+||+||+|+||+++|.++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999999999888642 345689999999999999999999876322
Q ss_pred -eeeeehhh------HHHHH---hh--------hhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChh
Q 005480 292 -FFSISGSE------FVEMF---VG--------VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDE 349 (694)
Q Consensus 292 -fi~vs~s~------~~~~~---~G--------~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e 349 (694)
++.+.... ....+ .| -....+|++.+.+.. ....|++||++|.+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------- 136 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------- 136 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc--------------
Confidence 11111100 00000 00 012345666555432 34579999999998
Q ss_pred HHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHH
Q 005480 350 REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIA 429 (694)
Q Consensus 350 ~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA 429 (694)
.....|.||+.|+... +.++|..|+.++.|-|.+++ |. ..+.|+.|+.++..++++........ +.+...++
T Consensus 137 ~~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 2346788888888643 34667777889999999999 65 57899999999999988876432211 12246677
Q ss_pred HhCCCCcHHHHHHHHH
Q 005480 430 MRTPGFSGADLANLLN 445 (694)
Q Consensus 430 ~~t~G~sgadL~~lv~ 445 (694)
....|- ++...++++
T Consensus 209 ~~a~Gs-~~~al~~l~ 223 (314)
T PRK07399 209 ALAQGS-PGAAIANIE 223 (314)
T ss_pred HHcCCC-HHHHHHHHH
Confidence 767654 444444443
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=6.5e-09 Score=112.69 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=106.7
Q ss_pred Ccccccc-chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--eee------ehhh
Q 005480 229 TFDDVAG-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--FSI------SGSE 299 (694)
Q Consensus 229 ~f~dv~G-~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf--i~v------s~s~ 299 (694)
.|+.|.| ++.+++.+...+.. .+.|..+||+||+|+||+++|+++|..+-++- -.. +|..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 88899888877752 24566899999999999999999998764321 000 0111
Q ss_pred HHH---------HHhh--hhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc
Q 005480 300 FVE---------MFVG--VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (694)
Q Consensus 300 ~~~---------~~~G--~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (694)
+.. ...| .+...+|++.+.+.. ...-|++|||+|.+ .....|.||+.++.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~--------------~~~a~NaLLK~LEE- 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM--------------TASAANSLLKFLEE- 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh--------------CHHHHHHHHHHhcC-
Confidence 100 0001 123456666655432 23469999999998 23467888988885
Q ss_pred cCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHH
Q 005480 365 EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (694)
Q Consensus 365 ~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~ 412 (694)
+..++++|.+|+.++.|-|.+++ |. ..++++.|+.++..++++.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45567777788888999999998 55 4689999999888777764
No 196
>PRK08116 hypothetical protein; Validated
Probab=98.99 E-value=4.2e-09 Score=110.94 Aligned_cols=123 Identities=21% Similarity=0.326 Sum_probs=76.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh----hhHHHHHHHHHHHhcCCeEEEEccccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~----~~~~vr~lF~~A~~~aP~ILfIDEID~l~ 336 (694)
+.|++|+|+||||||+||.++|+++ +.++++++.+++...+... ......++++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4589999999999999999999975 8899999999887654321 1112233444333 2359999998653
Q ss_pred cccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC-ccc----cchhhcCCCcc---ceeeeccCCCH
Q 005480 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLRPGRF---DRQVTVDVPDI 403 (694)
Q Consensus 337 ~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~----LD~aLlRpgRf---dr~I~i~~Pd~ 403 (694)
...++.+..+..++...- +.+..+|.|||. |+. ++..+.+ |+ -..|.+.-||.
T Consensus 191 --------~~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 --------RDTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred --------CCCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 123444445555554321 223457777875 333 4556665 53 12455555554
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.99 E-value=9.1e-10 Score=108.41 Aligned_cols=110 Identities=35% Similarity=0.426 Sum_probs=71.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CeeeeehhhHHHHHhhhhhHHHHHHHHHH----HhcCCeEEEEcccccccc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDAVGR 337 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~----pfi~vs~s~~~~~~~G~~~~~vr~lF~~A----~~~aP~ILfIDEID~l~~ 337 (694)
.+||+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||.+..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 6899999999999999999999996 9999999998761 11111122222211 011113999999999965
Q ss_pred ccCCCCCCCChhHHHHHHHHHhhhcCc---------cCCCCeEEEEecCCcc
Q 005480 338 QRGTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIVIAATNRAD 380 (694)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~~---------~~~~~ViVIaaTN~p~ 380 (694)
. ...+.+.....+.+.||..+|+- -.-.+++||+|+|.-.
T Consensus 83 ~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 4 11223334456677777766532 1124689999999644
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=7e-09 Score=123.31 Aligned_cols=170 Identities=20% Similarity=0.215 Sum_probs=121.6
Q ss_pred EEEEc--CCCChHHHHHHHHHHhc-----CCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcC------CeEEEEcccc
Q 005480 267 VLLVG--PPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA------PCIVFVDEID 333 (694)
Q Consensus 267 VLL~G--PpGTGKT~LArAlA~e~-----~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~a------P~ILfIDEID 333 (694)
-+..| |++.|||++|+++|++. +.+++.+++++... ...+|++.+.+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 56678 99999999999999997 56899999987422 235666665543322 3699999999
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHh
Q 005480 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (694)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~ 413 (694)
.+- ....+.|+..|+.. ..++.+|.+||.++.+.+++++ |+ ..+.|++|+.++....++..
T Consensus 641 ~Lt--------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALT--------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCC--------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 992 23566677777753 4567899999999999999998 65 57899999998888888877
Q ss_pred hcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 414 GSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 414 l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
+.+.++. ++..+..++..+.|- .+...++++.++.. ...|+.+++...
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GD-lR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGD-MRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 7654432 334578888888763 45555555554422 235777666544
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.99 E-value=2.6e-09 Score=107.56 Aligned_cols=203 Identities=20% Similarity=0.309 Sum_probs=118.8
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----Ceee
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFS 294 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~-----pfi~ 294 (694)
.+.+++++..+.||+|.++..+.+.-+...-..| +++|.||||||||+-+.++|+++=. -++.
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 3788999999999999999999988777655555 5999999999999999999998722 3455
Q ss_pred eehhhHHHHHhhhhhHHHH---HHHHHHHhcC----CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCC
Q 005480 295 ISGSEFVEMFVGVGASRVR---DLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (694)
Q Consensus 295 vs~s~~~~~~~G~~~~~vr---~lF~~A~~~a----P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (694)
+++|+-. +-.-+| ..|.+-+-.- -.||++||.|.+ ....+|.+.... +-+.+
T Consensus 84 LNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtM---EiyS~- 142 (333)
T KOG0991|consen 84 LNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTM---EIYSN- 142 (333)
T ss_pred ccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHH---HHHcc-
Confidence 5555421 222233 3454443322 259999999998 223455544433 32222
Q ss_pred CCeEEEEecCCccccchhhcCCCccceeeecc-CCCHHHHHHHHHHhh-cCCCCCccccHHHHHHhCCCCcHHHHHHHHH
Q 005480 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVD-VPDIRGRTEILKVHG-SNKKFDADVSLDVIAMRTPGFSGADLANLLN 445 (694)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~-~Pd~~eR~~Il~~~l-~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (694)
...+..++|..+.+-+.+.+ |.- .+.+. +-|..-..++++..- .+.+.. +..++.+.-..+| |.++.+|
T Consensus 143 -ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt-~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 143 -TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYT-DDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred -cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCC-cchHHHhhhhccc----hHHHHHH
Confidence 34566778888877777776 332 12222 223333333333332 222222 2235555544443 5555555
Q ss_pred HHHHHHHHhCCcccCHHHHHH
Q 005480 446 EAAILAGRRGKAAISSKEIDD 466 (694)
Q Consensus 446 eAa~~A~~~~~~~It~~di~~ 466 (694)
... +...|-..|+.+.+-+
T Consensus 214 nLQ--st~~g~g~Vn~enVfK 232 (333)
T KOG0991|consen 214 NLQ--STVNGFGLVNQENVFK 232 (333)
T ss_pred HHH--HHhccccccchhhhhh
Confidence 433 2234455555554433
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=5.8e-09 Score=112.88 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=104.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------eeeeehhhHHHHHhhhhhHHHHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLF 316 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~vs~s~~~~~~~G~~~~~vr~lF 316 (694)
.+.|.++||+||+|+|||++|+++|..+.+. ++.+...+ .-...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCCCCCHHHHHHHH
Confidence 4567899999999999999999999987542 11111100 00012345677776
Q ss_pred HHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCcc
Q 005480 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (694)
Q Consensus 317 ~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRf 392 (694)
+.+.. ....|++|||+|.+ .....|.||+.++. +..++++|.+|+.++.|.|.+++ |.
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m--------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM--------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC--------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc
Confidence 66543 34568999999999 23578889998885 44678888999999999999999 76
Q ss_pred ceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCC
Q 005480 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (694)
Q Consensus 393 dr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~ 435 (694)
. .+.|++|+.++-.+.+...... ..+.+...++....|-
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 4 5899999999888888765421 1222234555566554
No 201
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.8e-09 Score=110.57 Aligned_cols=84 Identities=31% Similarity=0.429 Sum_probs=62.9
Q ss_pred CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc--------CCCCeEEEEecC----CccccchhhcCCCc
Q 005480 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGR 391 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgR 391 (694)
-.||||||||.++.+.+.+. ..-.++-+...||-.++|-. ...++++||+.- .|..|-|.|. ||
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~--~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGG--PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred cCeEEEehhhHHHhcCCCCC--CCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 36999999999987665322 24445666777777776642 345789998873 5888888885 59
Q ss_pred cceeeeccCCCHHHHHHHHH
Q 005480 392 FDRQVTVDVPDIRGRTEILK 411 (694)
Q Consensus 392 fdr~I~i~~Pd~~eR~~Il~ 411 (694)
|.-.+++...+.++-.+||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999998888874
No 202
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.94 E-value=8.5e-09 Score=111.73 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=61.3
Q ss_pred Ccc-ccccchHHHHHHHHHHHHhcCchhhhhhcCC-CCceEEEEcCCCChHHHHHHHHHHhcCC-------Ceeeeeh--
Q 005480 229 TFD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSISG-- 297 (694)
Q Consensus 229 ~f~-dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~-~prgVLL~GPpGTGKT~LArAlA~e~~~-------pfi~vs~-- 297 (694)
-|+ ++.|++++++++.+.+.... .|.. ..+.++|+||||+|||+||++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 466 99999999887766554432 1222 2457999999999999999999999976 9999988
Q ss_pred --hhHHHHHhhhhhHHHHHHHHH
Q 005480 298 --SEFVEMFVGVGASRVRDLFKK 318 (694)
Q Consensus 298 --s~~~~~~~G~~~~~vr~lF~~ 318 (694)
+.+.++.++.....+|+.|..
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHH
Confidence 666666666555555555544
No 203
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.93 E-value=5.6e-09 Score=117.22 Aligned_cols=209 Identities=21% Similarity=0.299 Sum_probs=120.9
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV 305 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~ 305 (694)
.+.+++|.+...+.+.+.+..+... ..+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4668899988888887777654332 2369999999999999999997654 57999999987643321
Q ss_pred -----hhh-------hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc-----Cc-cCC
Q 005480 306 -----GVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GF-EGN 367 (694)
Q Consensus 306 -----G~~-------~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld-----~~-~~~ 367 (694)
|.. .......|+.| ...+||||||+.+ +.+.+..+..++..-. +. ...
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceee
Confidence 100 01111223333 2468999999999 3444555555554311 00 012
Q ss_pred CCeEEEEecCCcc--ccchhhcCCCccce--eeeccCCCHHHHHH----HHHHhhc----CCCCC-cccc---HHHHHHh
Q 005480 368 TGIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGS----NKKFD-ADVS---LDVIAMR 431 (694)
Q Consensus 368 ~~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----Il~~~l~----~~~l~-~dvd---l~~lA~~ 431 (694)
.++.+|++|+..- .+....+++..|++ .+.+..|...+|.+ +++.++. ..... ..++ +..|...
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC
Confidence 3678899887631 11112222211222 56788899999876 2333322 11111 1222 3444443
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHH
Q 005480 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (694)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di 464 (694)
.--.+.++|+++++.|+..+ ....|+.+++
T Consensus 353 ~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 353 AWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred CCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 32235678888888887654 2345666654
No 204
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.87 E-value=2.4e-08 Score=108.91 Aligned_cols=215 Identities=25% Similarity=0.398 Sum_probs=129.0
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCeee-----
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFS----- 294 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-------~~pfi~----- 294 (694)
.+.|.-++|++..|..|.-. .-+|+ -.|+||.|+.|||||+++|+||.-+ |+||--
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 56799999999999876532 22232 1389999999999999999999865 333320
Q ss_pred -eehhhHHH-------------------HHhhhhhHHH------HHHHHH----------HHhcCCeEEEEccccccccc
Q 005480 295 -ISGSEFVE-------------------MFVGVGASRV------RDLFKK----------AKENAPCIVFVDEIDAVGRQ 338 (694)
Q Consensus 295 -vs~s~~~~-------------------~~~G~~~~~v------r~lF~~----------A~~~aP~ILfIDEID~l~~~ 338 (694)
-.|..... .-.+.++.++ ....+. |+.+ ..|++|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc---
Confidence 01111111 1122333321 111110 1111 259999999888
Q ss_pred cCCCCCCCChhHHHHHHHHHhhhc---------Cc--cCCCCeEEEEecCCcc-ccchhhcCCCccceeeeccCC-CHHH
Q 005480 339 RGTGIGGGNDEREQTLNQLLTEMD---------GF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRG 405 (694)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld---------~~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~P-d~~e 405 (694)
. .+.++.||+.+. |+ ....++++|+|+|..+ .|-|.|+. ||...|.+..| +.++
T Consensus 157 --------~---d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 157 --------D---DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred --------c---HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 2 345555555443 22 2345799999999743 68888988 99999998766 6888
Q ss_pred HHHHHHHhhcCCCCCcccc-------------------------------HHHHHHh-----CCCCcHHHHHHHHHHHHH
Q 005480 406 RTEILKVHGSNKKFDADVS-------------------------------LDVIAMR-----TPGFSGADLANLLNEAAI 449 (694)
Q Consensus 406 R~~Il~~~l~~~~l~~dvd-------------------------------l~~lA~~-----t~G~sgadL~~lv~eAa~ 449 (694)
|.+|.++.+.-. ..++.- ...++.. ..| .-+|+ .+++.|..
T Consensus 224 rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi-~~~r~a~a 300 (423)
T COG1239 224 RVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADI-VVVRAAKA 300 (423)
T ss_pred HHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-Cchhh-HHHHHHHH
Confidence 999887654321 111110 1111111 112 11222 45566677
Q ss_pred HHHHhCCcccCHHHHHHHHHHHHc
Q 005480 450 LAGRRGKAAISSKEIDDSIDRIVA 473 (694)
Q Consensus 450 ~A~~~~~~~It~~di~~Ai~~v~~ 473 (694)
.|+..|+..++.+|+++|..-...
T Consensus 301 ~aa~~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 301 LAALRGRTEVEEEDIREAAELALL 324 (423)
T ss_pred HHHhcCceeeehhhHHHHHhhhhh
Confidence 777788888888888888765543
No 205
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.86 E-value=3.1e-08 Score=117.59 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=76.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeeehhhHHHHHh-hhhhHHH-HHHHHHHHhcCCeEEEEcccc
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVEMFV-GVGASRV-RDLFKKAKENAPCIVFVDEID 333 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~-------~~pfi~vs~s~~~~~~~-G~~~~~v-r~lF~~A~~~aP~ILfIDEID 333 (694)
-.-+|||+|+||||||.+|++++... |.++..+.+..+..... ..+...+ ...+..| ...++||||+|
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEid 567 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELD 567 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchh
Confidence 34479999999999999999998754 24555555444321000 0000000 0111122 13599999999
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHhhhc------Cc--cCCCCeEEEEecCCcc-------------ccchhhcCCCcc
Q 005480 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMD------GF--EGNTGIIVIAATNRAD-------------ILDSALLRPGRF 392 (694)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~l~~LL~~ld------~~--~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRf 392 (694)
.+ +...+..+.+++.+=. |. .-+.++.||||+|... .|+++|++ ||
T Consensus 568 km-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 568 KC-----------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred hC-----------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 98 2333344444443211 11 1235789999999742 47799999 99
Q ss_pred ceee-eccCCCHHHHHHH
Q 005480 393 DRQV-TVDVPDIRGRTEI 409 (694)
Q Consensus 393 dr~I-~i~~Pd~~eR~~I 409 (694)
|..+ .++.|+.+.=+.|
T Consensus 635 DLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cEEEEecCCCChHHHHHH
Confidence 9854 5577776543333
No 206
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.86 E-value=1.2e-08 Score=118.81 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=63.5
Q ss_pred CeEEEEecCCc--cccchhhcCCCccc---eeeecc--CCC-HHHHHHHHHHhhcCCC---CCccccH---HHHHH---h
Q 005480 369 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVD--VPD-IRGRTEILKVHGSNKK---FDADVSL---DVIAM---R 431 (694)
Q Consensus 369 ~ViVIaaTN~p--~~LD~aLlRpgRfd---r~I~i~--~Pd-~~eR~~Il~~~l~~~~---l~~dvdl---~~lA~---~ 431 (694)
++.||+++|+. ..+||+|.. ||. ..+.++ .++ .+.+..+++...+... ....++- ..+.. +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 67899999874 567899888 775 344443 222 4445556554332211 1112222 22221 1
Q ss_pred CCC------CcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 005480 432 TPG------FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (694)
Q Consensus 432 t~G------~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~ 470 (694)
..| ..-++|.+++++|...|..++...++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 346899999999999999999999999999998864
No 207
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.86 E-value=2.9e-09 Score=100.74 Aligned_cols=105 Identities=30% Similarity=0.500 Sum_probs=72.1
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeeehhhHHHHHhhhhhH
Q 005480 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMFVGVGAS 310 (694)
Q Consensus 234 ~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~---~pfi~vs~s~~~~~~~G~~~~ 310 (694)
+|.+.+.+++++.+..+.... ..|||+|++||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 477888888888887765432 3799999999999999999988664 588888887643
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 311 ~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
.++++.+ .+.+|||+|||.+ +.+.+..+.+++...+ +.++.+|+++.
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~ 108 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSS 108 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEEC
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeC
Confidence 3456655 4568999999999 4455555555555432 34456666654
No 208
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.86 E-value=1.4e-08 Score=114.39 Aligned_cols=209 Identities=23% Similarity=0.335 Sum_probs=121.3
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHHH-
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF- 304 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~~~~~~- 304 (694)
.+.+++|.+.....+.+.+..+.... ..++++|++||||+++|+++... .+.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQ----------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCC----------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45678898888887777665544332 37999999999999999999665 46899999998764322
Q ss_pred ----hhhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Ccc----CC
Q 005480 305 ----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (694)
Q Consensus 305 ----~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~ 367 (694)
.|... ......|..| ...+|||||||.+ +...+..+..++..-. ... ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 11100 0001123333 2358999999999 3334444444443211 001 12
Q ss_pred CCeEEEEecCCccccchhhcCCCccce-------eeeccCCCHHHHHH----HHHHhhcCC----CCC-cccc---HHHH
Q 005480 368 TGIIVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGSNK----KFD-ADVS---LDVI 428 (694)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr-------~I~i~~Pd~~eR~~----Il~~~l~~~----~l~-~dvd---l~~l 428 (694)
.++.+|++||..- ..+.+.|+|.. .+.+..|+..+|.+ ++..++.+. ... ..++ +..+
T Consensus 277 ~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3578999998631 12233333332 57788999998865 222222211 111 1122 3334
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 429 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 429 A~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
....---+.++|+++++.|...+ ....|+.+|+...
T Consensus 354 ~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~ 389 (457)
T PRK11361 354 TAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQ 389 (457)
T ss_pred HcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHh
Confidence 33332235678888888877544 3456777776543
No 209
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.85 E-value=1.8e-08 Score=113.95 Aligned_cols=209 Identities=20% Similarity=0.316 Sum_probs=124.0
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHH-
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF- 304 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~- 304 (694)
.+.+++|.+...+.+.+.+..+... ...++++|++|||||++|+++.... +.||+.++|+.+.+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999999888888777654433 2379999999999999999997765 5799999998764321
Q ss_pred ----hhhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc-----Cc-cCC
Q 005480 305 ----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GF-EGN 367 (694)
Q Consensus 305 ----~G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld-----~~-~~~ 367 (694)
.|... ......|+.+ ....|||||||.+ ....+..+..++..-. +. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 11100 0001123333 2358999999998 3344444444444211 00 112
Q ss_pred CCeEEEEecCCcc-------ccchhhcCCCccceeeeccCCCHHHHHH----HHHHhhc----CCC-----CCccccHHH
Q 005480 368 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NKK-----FDADVSLDV 427 (694)
Q Consensus 368 ~~ViVIaaTN~p~-------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----Il~~~l~----~~~-----l~~dvdl~~ 427 (694)
.++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.+ ++++++. ... +.++ .+..
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~ 347 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE-TEAA 347 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHH
Confidence 3578898887531 22233333 332 46788888888865 3333332 111 2222 1334
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 428 lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
|....---+.++|+++++.+...+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 443332235678888888877655 34568877775433
No 210
>PRK12377 putative replication protein; Provisional
Probab=98.84 E-value=2.9e-08 Score=103.34 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=66.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhhhh--HHHHHHHHHHHhcCCeEEEEcccccccccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~~~--~~vr~lF~~A~~~aP~ILfIDEID~l~~~r 339 (694)
.+++|+||||||||+||.|+|+++ +..+++++..++...+..... ....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~--- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR--- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---
Confidence 489999999999999999999877 788899999888775432111 1122344443 345799999997652
Q ss_pred CCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
.++.....+.+++..-. ....-+|.|||.
T Consensus 177 ------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl 205 (248)
T PRK12377 177 ------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNL 205 (248)
T ss_pred ------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCC
Confidence 23445566666665432 122335667885
No 211
>PRK08181 transposase; Validated
Probab=98.83 E-value=3.6e-08 Score=103.79 Aligned_cols=98 Identities=20% Similarity=0.314 Sum_probs=65.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh-hhHHHHHHHHHHHhcCCeEEEEccccccccccC
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~ 340 (694)
.+++|+||||||||+||.+++.++ |..+++++..++.+.+... ........++... .+.+|+|||++.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~---- 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT---- 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc----
Confidence 489999999999999999998754 7889999999988765322 1122333444433 45799999998863
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 341 ~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
..+.....+.+++....+ + + -+|.|||.
T Consensus 181 -----~~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~ 208 (269)
T PRK08181 181 -----KDQAETSVLFELISARYE---R-R-SILITANQ 208 (269)
T ss_pred -----CCHHHHHHHHHHHHHHHh---C-C-CEEEEcCC
Confidence 233344556666654332 1 2 36667775
No 212
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.8e-08 Score=107.95 Aligned_cols=134 Identities=25% Similarity=0.332 Sum_probs=97.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCee---eeehh------hHHH-----H-Hh--------------------
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SISGS------EFVE-----M-FV-------------------- 305 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi---~vs~s------~~~~-----~-~~-------------------- 305 (694)
.+.|.++||+||+|+||+++|+++|..+.+.-- .-.|. .+.. . ++
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 477889999999999999999999987754220 00111 0000 0 00
Q ss_pred -------------hhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCC
Q 005480 306 -------------GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (694)
Q Consensus 306 -------------G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (694)
.-+...+|++.+.+.. ....|++||++|.+ .....|.||+.++ ++..
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--------------NVAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--------------CHHHHHHHHHHhc--CCCc
Confidence 1123466776665432 33459999999998 3457889999999 4677
Q ss_pred CeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHh
Q 005480 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (694)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~ 413 (694)
++++|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 88999999999999999999 76 57899999999888888764
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.80 E-value=5.1e-08 Score=101.26 Aligned_cols=130 Identities=17% Similarity=0.246 Sum_probs=80.7
Q ss_pred CCCccccccc-hHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 005480 227 GVTFDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (694)
Q Consensus 227 ~~~f~dv~G~-~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~ 302 (694)
..+|++..-. +..+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +.++++++..++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 4567776532 333333333333333211 012489999999999999999999987 78999999999887
Q ss_pred HHhhhh---hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 303 MFVGVG---ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 303 ~~~G~~---~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
.+.... ......+++... ..++|+|||++... ..++....+.+++..-- ...-.+|.+||.
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl 204 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRS----SSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCC
Confidence 543321 112234455443 45799999998862 23445567777765421 222356677885
No 214
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.80 E-value=2.2e-08 Score=106.31 Aligned_cols=209 Identities=24% Similarity=0.381 Sum_probs=133.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCeeeeehhhHHH
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE 302 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~---e~~~pfi~vs~s~~~~ 302 (694)
....|+.+++.+...+.+.+....+..-+ -.+||.|..||||-++||+.-. +...||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlD----------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLD----------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccC----------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 45579999999888777766555443322 1599999999999999999844 3378999999987765
Q ss_pred H-----Hhhhh--hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc--------cCC
Q 005480 303 M-----FVGVG--ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--------EGN 367 (694)
Q Consensus 303 ~-----~~G~~--~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--------~~~ 367 (694)
. ..|.. .+.-..+|+.|... .+|+|||..+ +...+..+..||+ ||- +..
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~--DGtFRRVGee~Ev~ 332 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLN--DGTFRRVGEDHEVH 332 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhc--CCceeecCCcceEE
Confidence 3 23332 24456789988665 6899999887 4455555556654 221 112
Q ss_pred CCeEEEEecCC--ccccchhhcCCCccce--eeeccCCCHHHHHH--------HHHHhhcCCCCC-ccccHH---HHHH-
Q 005480 368 TGIIVIAATNR--ADILDSALLRPGRFDR--QVTVDVPDIRGRTE--------ILKVHGSNKKFD-ADVSLD---VIAM- 430 (694)
Q Consensus 368 ~~ViVIaaTN~--p~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~--------Il~~~l~~~~l~-~dvdl~---~lA~- 430 (694)
.+|.||+||.. .+..+..-+|...|.| +..+..|...+|.+ ++..++.+.... +..+.+ .+.+
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 36999999964 4455555566656666 77888999888854 334444443322 223322 2222
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHH
Q 005480 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (694)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di 464 (694)
..+| +.++|.|.+-.|+.... ...++.+|+
T Consensus 413 ~WpG-NVRqL~N~iyRA~s~~E---g~~l~i~~i 442 (511)
T COG3283 413 AWPG-NVRQLKNAIYRALTLLE---GYELRIEDI 442 (511)
T ss_pred CCCc-cHHHHHHHHHHHHHHhc---cCccchhhc
Confidence 2333 45778888777776552 234444444
No 215
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.80 E-value=2.6e-08 Score=97.12 Aligned_cols=136 Identities=20% Similarity=0.279 Sum_probs=86.7
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeee----eehh---hHHHH----
Q 005480 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS----ISGS---EFVEM---- 303 (694)
Q Consensus 235 G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~----vs~s---~~~~~---- 303 (694)
|++++++.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-+.-.. -.|. .+...
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677777777777653 2456689999999999999999999976332111 1111 11100
Q ss_pred --H---h----hhhhHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCe
Q 005480 304 --F---V----GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI 370 (694)
Q Consensus 304 --~---~----G~~~~~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~V 370 (694)
+ . .-..+.++++.+.+.. ...-|++|||+|.+ .....|.||+.|+. +..++
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEe--pp~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEE--PPENT 133 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--TTTTE
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcC--CCCCE
Confidence 0 0 1134566766666532 34569999999998 34577888998885 45678
Q ss_pred EEEEecCCccccchhhcCCCccceeeeccC
Q 005480 371 IVIAATNRADILDSALLRPGRFDRQVTVDV 400 (694)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfdr~I~i~~ 400 (694)
++|.+|+.++.|-|.+++ |. ..+.++.
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 999999999999999999 55 2344443
No 216
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.77 E-value=1.6e-07 Score=97.86 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=92.3
Q ss_pred CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC------------ccccchhhcCCCc
Q 005480 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~------------p~~LD~aLlRpgR 391 (694)
|.||||||++.| +-+.-..+|.-|.. .+. -++|.+||+ |+-++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~--d~~----PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN--DMA----PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh--ccC----cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 789999998887 33455556655541 121 255556664 5566766666 4
Q ss_pred cceeeeccCCCHHHHHHHHHHhhcCCCCCccc-cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 005480 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (694)
Q Consensus 392 fdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~ 470 (694)
. ..|...+++.++.++||+..+......-+. .++.|......-|-+--.+|+..|...+.++....+..+|++.+..-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 4 367778889999999999998775543222 24555555555566777789999999999999999999999999876
Q ss_pred HHcCc
Q 005480 471 IVAGM 475 (694)
Q Consensus 471 v~~g~ 475 (694)
.+...
T Consensus 429 FlD~~ 433 (454)
T KOG2680|consen 429 FLDEK 433 (454)
T ss_pred Hhhhh
Confidence 55443
No 217
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.4e-08 Score=108.27 Aligned_cols=98 Identities=32% Similarity=0.516 Sum_probs=68.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-HHhhhh-hHHHHHHHHHHH----hcCCeEEEEcccccccccc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVG-ASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQR 339 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~-~~~G~~-~~~vr~lF~~A~----~~aP~ILfIDEID~l~~~r 339 (694)
+|||.||+|+|||+||+.+|+-+++||...+|..+.. .|+|+. +..+..++..|. +....|+||||+|.++.+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 6999999999999999999999999999999998864 588875 344566665552 2334699999999998543
Q ss_pred CCCCCCCChhHHHHHHHHHhhhcC
Q 005480 340 GTGIGGGNDEREQTLNQLLTEMDG 363 (694)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~ 363 (694)
..-...-+-..+-+...||+.++|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc
Confidence 221111111123344456666655
No 218
>PRK06526 transposase; Provisional
Probab=98.76 E-value=3.7e-08 Score=102.96 Aligned_cols=100 Identities=25% Similarity=0.367 Sum_probs=65.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhhh-hHHHHHHHHHHHhcCCeEEEEcccccccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~~-~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r 339 (694)
+.+++|+||||||||+||.+++.++ |..+.++++.++.+...... .......+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 3489999999999999999998765 78888888888877543211 11222333332 346799999998872
Q ss_pred CCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
...+....+.+++..... + + .+|.+||.+
T Consensus 173 ------~~~~~~~~L~~li~~r~~---~-~-s~IitSn~~ 201 (254)
T PRK06526 173 ------FEPEAANLFFQLVSSRYE---R-A-SLIVTSNKP 201 (254)
T ss_pred ------CCHHHHHHHHHHHHHHHh---c-C-CEEEEcCCC
Confidence 133444556666654322 1 2 366677763
No 219
>PRK15115 response regulator GlrR; Provisional
Probab=98.74 E-value=5.6e-08 Score=109.14 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=118.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh-
Q 005480 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV- 307 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~- 307 (694)
.++|.+.....+.+.+..+... ...++|+|++|||||++|+++.... +.||+.++|..+.+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 5677776666655555443322 2269999999999999999997754 5899999998764322111
Q ss_pred ----hh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Ccc----CCCCe
Q 005480 308 ----GA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNTGI 370 (694)
Q Consensus 308 ----~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~~~V 370 (694)
.. .....+|+.+ ...+|||||||.+ +...+..+..++..-. ... ...++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 00 0001122222 2358999999999 3344444444443211 011 12267
Q ss_pred EEEEecCCccccchhhcCCCccc-----e--eeeccCCCHHHHHH----HHHHhhcC----CC-----CCccccHHHHHH
Q 005480 371 IVIAATNRADILDSALLRPGRFD-----R--QVTVDVPDIRGRTE----ILKVHGSN----KK-----FDADVSLDVIAM 430 (694)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfd-----r--~I~i~~Pd~~eR~~----Il~~~l~~----~~-----l~~dvdl~~lA~ 430 (694)
.+|++|+.. ++..+ ..|+|. + .+.+..|...+|.+ +++.++.. .. ++++ -+..|..
T Consensus 271 rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~ 346 (444)
T PRK15115 271 RIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMT 346 (444)
T ss_pred EEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHh
Confidence 899999853 33333 234442 2 56788899999865 22333321 11 2222 2444554
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
..---+.++|+++++.|+..+ ....|+.+++...
T Consensus 347 ~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 380 (444)
T PRK15115 347 ASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQA 380 (444)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhh
Confidence 442235678888888876543 3456777776543
No 220
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.74 E-value=9.9e-08 Score=100.45 Aligned_cols=201 Identities=19% Similarity=0.188 Sum_probs=125.9
Q ss_pred ccccccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 216 s~~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
....-+.+++++-+++|+++.++....+.+..+.-+. | +.|+|||||||||....+.|..+..|.-+-
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~l-----------P-h~L~YgPPGtGktsti~a~a~~ly~~~~~~ 93 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGL-----------P-HLLFYGPPGTGKTSTILANARDFYSPHPTT 93 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCC-----------C-cccccCCCCCCCCCchhhhhhhhcCCCCch
Confidence 3344567888999999999999999988877443333 2 799999999999999999999987762111
Q ss_pred ehhhHHHHH----hhhhh-HHHHHHHHHHHh-------cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcC
Q 005480 296 SGSEFVEMF----VGVGA-SRVRDLFKKAKE-------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (694)
Q Consensus 296 s~s~~~~~~----~G~~~-~~vr~lF~~A~~-------~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~ 363 (694)
+-..+.. .|... +.--..|..++. ..+..+++||.|++. ....|+|-..++.
T Consensus 94 --~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek 157 (360)
T KOG0990|consen 94 --SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEK 157 (360)
T ss_pred --hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHH
Confidence 1111111 11111 112234555553 267899999999983 2345555566665
Q ss_pred ccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCcccc-HHHHHHhCCCCcHHHHHH
Q 005480 364 FEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLAN 442 (694)
Q Consensus 364 ~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~lA~~t~G~sgadL~~ 442 (694)
+..+ +.++..+|++..+.|++++ |+.+ +.+.+-+...-...+.+++.........+ ...++. .+-.|.+.
T Consensus 158 ~t~n--~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~ 228 (360)
T KOG0990|consen 158 YTAN--TRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRV 228 (360)
T ss_pred hccc--eEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHH
Confidence 5444 4555667999999999998 6654 34555555566666666665444332211 122222 34567777
Q ss_pred HHHHHHHHHHH
Q 005480 443 LLNEAAILAGR 453 (694)
Q Consensus 443 lv~eAa~~A~~ 453 (694)
.+|.....+..
T Consensus 229 a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 229 ALNYLQSILKK 239 (360)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 221
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.72 E-value=5e-08 Score=110.09 Aligned_cols=209 Identities=19% Similarity=0.295 Sum_probs=120.1
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh-
Q 005480 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV- 305 (694)
Q Consensus 230 f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~- 305 (694)
+.+++|.+....++.+.+..+... +..+++.|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456889888888887776654433 2379999999999999999997654 67999999987643221
Q ss_pred ----hhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcC--c----cCCC
Q 005480 306 ----GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F----EGNT 368 (694)
Q Consensus 306 ----G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~--~----~~~~ 368 (694)
|... ......|+. ...++|||||||.+ +.+.+..+..++..-.. . ....
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeee
Confidence 1100 000111222 23568999999999 33444555555543210 0 1123
Q ss_pred CeEEEEecCCcc-------ccchhhcCCCccceeeeccCCCHHHHHH----HHHHhhc----CCCCC-cccc---HHHHH
Q 005480 369 GIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NKKFD-ADVS---LDVIA 429 (694)
Q Consensus 369 ~ViVIaaTN~p~-------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----Il~~~l~----~~~l~-~dvd---l~~lA 429 (694)
++.+|++|+..- .+.+.|.. |+. .+.+.+|...+|.+ +++.++. ..... ..++ +..|.
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLK 345 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 578888887531 11222222 222 45777888777754 3333322 11111 1222 33333
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 005480 430 MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (694)
Q Consensus 430 ~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai 468 (694)
...---+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 346 ~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 346 QLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 3321124578888888887665 23568888876554
No 222
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.7e-07 Score=99.59 Aligned_cols=133 Identities=16% Similarity=0.223 Sum_probs=94.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCe--eeeeh------hhHH----------HHHhh--hhhHHHHHHHHHHHh
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--FSISG------SEFV----------EMFVG--VGASRVRDLFKKAKE 321 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pf--i~vs~------s~~~----------~~~~G--~~~~~vr~lF~~A~~ 321 (694)
+.|.++||+||+|+||+++|+++|..+-+.- -.-.| ..+. ....| -+...+|++-+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 5677899999999999999999998764311 00011 1110 00001 234567776655532
Q ss_pred ----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeee
Q 005480 322 ----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 397 (694)
Q Consensus 322 ----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~ 397 (694)
...-|++||++|.+ .....|.||+.++. +..++++|.+|+.++.|.|.+++ |. ..+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERL--------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred ccccCCceEEEEechhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 33469999999999 34578889999984 56778899999999999999998 65 4678
Q ss_pred ccCCCHHHHHHHHHHh
Q 005480 398 VDVPDIRGRTEILKVH 413 (694)
Q Consensus 398 i~~Pd~~eR~~Il~~~ 413 (694)
+++|+.++..+.|...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999988888777764
No 223
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.70 E-value=1.3e-08 Score=94.85 Aligned_cols=111 Identities=32% Similarity=0.415 Sum_probs=58.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh-hHH-HHHhhhhhHHH-HHHHHHHHh-cCCeEEEEccccccccccCC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV-EMFVGVGASRV-RDLFKKAKE-NAPCIVFVDEIDAVGRQRGT 341 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s-~~~-~~~~G~~~~~v-r~lF~~A~~-~aP~ILfIDEID~l~~~r~~ 341 (694)
+|||.|+||+|||++|+++|...+..|..+.+. ++. +...|...-.. ...|+..+. --..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 589999999999999999999999999998875 332 22222210000 000000000 00149999999886
Q ss_pred CCCCCChhHHHHHHHHHhhhcC---------ccCCCCeEEEEecCCcc-----ccchhhcCCCcc
Q 005480 342 GIGGGNDEREQTLNQLLTEMDG---------FEGNTGIIVIAATNRAD-----ILDSALLRPGRF 392 (694)
Q Consensus 342 ~~~~~~~e~~~~l~~LL~~ld~---------~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRf 392 (694)
..++...||+.|.. +.-...+.||||-|..+ .|+.+++. ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 33455666666542 22244689999999866 67888887 77
No 224
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.70 E-value=2.6e-07 Score=93.18 Aligned_cols=183 Identities=23% Similarity=0.304 Sum_probs=95.1
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC---Ceeeeeh-hhH----HHHH-
Q 005480 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISG-SEF----VEMF- 304 (694)
Q Consensus 234 ~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~---pfi~vs~-s~~----~~~~- 304 (694)
+|.++..+.|.+.+..- ....++|+||+|+|||+|++.+.....- ..+++.+ ... ...+
T Consensus 2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 45666666666554321 1337999999999999999999998722 2222221 100 0000
Q ss_pred ------------h-----------------hhhhHHHHHHHHHHHhc-CCeEEEEccccccc-cccCCCCCCCChhHHHH
Q 005480 305 ------------V-----------------GVGASRVRDLFKKAKEN-APCIVFVDEIDAVG-RQRGTGIGGGNDEREQT 353 (694)
Q Consensus 305 ------------~-----------------G~~~~~vr~lF~~A~~~-aP~ILfIDEID~l~-~~r~~~~~~~~~e~~~~ 353 (694)
. ......+..+++...+. ...||+|||++.+. ... .....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~ 140 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDF 140 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHH
Confidence 0 11234456666666543 34899999999995 111 22344
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCccccc------hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCC-CC-CccccH
Q 005480 354 LNQLLTEMDGFEGNTGIIVIAATNRADILD------SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-KF-DADVSL 425 (694)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD------~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~-~l-~~dvdl 425 (694)
+..|...++......++.+|.++....... ..+. +|+.. +.+++-+.++..++++..+... .+ .++.++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 455555555433445554444443322221 2232 36766 9999999999999999876655 11 245567
Q ss_pred HHHHHhCCCCcHHHHH
Q 005480 426 DVIAMRTPGFSGADLA 441 (694)
Q Consensus 426 ~~lA~~t~G~sgadL~ 441 (694)
+.+...+.|. |+-|.
T Consensus 218 ~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 218 EEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHHHTT--HHHHH
T ss_pred HHHHHHhCCC-HHHHh
Confidence 7888888775 55443
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.69 E-value=1.4e-07 Score=102.20 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=68.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh---hhHHHHHHHHHHHhcCCeEEEEccccccccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~---~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~ 338 (694)
.+++|+||+|||||+||.|+|+++ +..+++++..++...+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 589999999999999999999986 7899999999988755321 1111122233333 34699999997752
Q ss_pred cCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC-ccc----cchhhcC
Q 005480 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLR 388 (694)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~----LD~aLlR 388 (694)
.++.....+..++...-. + +--+|.|||. ++. +++.+.+
T Consensus 260 -------~t~~~~~~Lf~iin~R~~---~-~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRLL---R-QKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred -------CCHHHHHHHHHHHHHHHH---C-CCCEEEECCCCHHHHHHHHhHHHHH
Confidence 234444455555544221 1 1236667774 333 3455655
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.7e-07 Score=101.71 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=102.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC--eeeeehh------hHHH----------HH---hhhhhHHHHHHHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGS------EFVE----------MF---VGVGASRVRDLFKKA 319 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~p--fi~vs~s------~~~~----------~~---~G~~~~~vr~lF~~A 319 (694)
.+.|..+||+||+|+||+++|.++|..+-+. --.-.|. .+.. .- ..-+...+|++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4667899999999999999999999876331 0000111 1100 00 012344566666555
Q ss_pred H----hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCcccee
Q 005480 320 K----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 395 (694)
Q Consensus 320 ~----~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~ 395 (694)
. ....-|++||++|.+ .....|.||+.++. +..++++|..|+.++.|-|.+++ |.. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALL--------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 3 234569999999999 34578899999984 56778999999999999999999 664 5
Q ss_pred eeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCc
Q 005480 396 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 436 (694)
Q Consensus 396 I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~s 436 (694)
+.+++|+.++..+.|.... +.+. .+...++..+.|-.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G~~ 198 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAGAP 198 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCCCH
Confidence 7999999888777775431 2222 22445566666543
No 227
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.69 E-value=2.9e-07 Score=105.19 Aligned_cols=194 Identities=18% Similarity=0.280 Sum_probs=122.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCCeeeeehhhHHH----------HHhhhh------hHHHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVE----------MFVGVG------ASRVRDLFKKA 319 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~----------~~pfi~vs~s~~~~----------~~~G~~------~~~vr~lF~~A 319 (694)
.++++|-||||||..++.+-.++ ..+++.+++-.+.+ .+.|.. ...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58999999999999999997744 35677777654432 122221 11222233311
Q ss_pred -HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccch----hhcCCCccce
Q 005480 320 -KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS----ALLRPGRFDR 394 (694)
Q Consensus 320 -~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~----aLlRpgRfdr 394 (694)
-...||||+|||+|.|..+ .+.++..++..-. ..+.+++||+..|.-+.... ..-+ |++.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-----------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-----------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-----------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 2345799999999999643 3456666665432 23567888888886443222 2222 5554
Q ss_pred -eeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcH--HHHHHHHHHHHHHHHHhCC-------cccCHHHH
Q 005480 395 -QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG--ADLANLLNEAAILAGRRGK-------AAISSKEI 464 (694)
Q Consensus 395 -~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sg--adL~~lv~eAa~~A~~~~~-------~~It~~di 464 (694)
.+.|.+++..+..+|+...+.....-..-..+.+|+.-...|| +-...+|+.|...|..+.. ..|++.|+
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHH
Confidence 7899999999999999998877632111113333443333333 3345788888888876654 56777888
Q ss_pred HHHHHHHHcC
Q 005480 465 DDSIDRIVAG 474 (694)
Q Consensus 465 ~~Ai~~v~~g 474 (694)
.+|++.+...
T Consensus 649 ~~Ai~em~~~ 658 (767)
T KOG1514|consen 649 MEAINEMLAS 658 (767)
T ss_pred HHHHHHHhhh
Confidence 8888766543
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=3.1e-07 Score=99.01 Aligned_cols=154 Identities=20% Similarity=0.305 Sum_probs=101.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCe--e--eeehhhHHHH-------Hh-------h------hhhHHHHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--F--SISGSEFVEM-------FV-------G------VGASRVRDLF 316 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf--i--~vs~s~~~~~-------~~-------G------~~~~~vr~lF 316 (694)
.+.|..+||+||+|+||+++|.++|..+-+.= - ...|..+... ++ | .+.+.+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 35677899999999999999999998663310 0 0111111110 00 1 1244567766
Q ss_pred HHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCcc
Q 005480 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (694)
Q Consensus 317 ~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRf 392 (694)
+.+.. ...-|++||++|.+ .....|.||+.++. +..++++|.+|+.++.|-|.+++ |.
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAI--------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhh--------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh
Confidence 65533 22369999999999 34577889998885 45567888888999999999999 66
Q ss_pred ceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHH
Q 005480 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGA 438 (694)
Q Consensus 393 dr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sga 438 (694)
..+.++.|+.++-.+.|... ..+ ..+...++..+.|..+.
T Consensus 165 -q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 165 -QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGL 204 (319)
T ss_pred -eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHH
Confidence 46789999988877777642 222 12233556666654443
No 229
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.66 E-value=1.7e-07 Score=108.47 Aligned_cols=189 Identities=15% Similarity=0.149 Sum_probs=128.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeeeeehhhHHHHHhhhhh--H--------HHHHHHHHHHhcCCeEEEEccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGA--S--------RVRDLFKKAKENAPCIVFVDEI 332 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~--~pfi~vs~s~~~~~~~G~~~--~--------~vr~lF~~A~~~aP~ILfIDEI 332 (694)
.||+|.|++||+||+++++++.-+. .||..+..+--.+..+|... . .-..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 4899999999999999999999874 58887766554455555431 0 0112222222 259999999
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCCc---cccchhhcCCCccceeeec
Q 005480 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTV 398 (694)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p---~~LD~aLlRpgRfdr~I~i 398 (694)
..+ ...++..|++-|+.- ....++++|++-|.. ..|.++++. ||+.++.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 887 335677777777531 123468888874432 458899999 99999999
Q ss_pred cCCCHHHH-------HHHHHH--hhcCCCCCccccHHHHHHh--CCCC-cHHHHHHHHHHHHHHHHHhCCcccCHHHHHH
Q 005480 399 DVPDIRGR-------TEILKV--HGSNKKFDADVSLDVIAMR--TPGF-SGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (694)
Q Consensus 399 ~~Pd~~eR-------~~Il~~--~l~~~~l~~dvdl~~lA~~--t~G~-sgadL~~lv~eAa~~A~~~~~~~It~~di~~ 466 (694)
+.|+..+. .+|.+. .+.+..+.+.+ +..++.. ..|. |.+--..+++-|..+|..+|+..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~-l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEA-IAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 98875532 123322 23333333221 3333221 2355 6777778999999999999999999999999
Q ss_pred HHHHHHc
Q 005480 467 SIDRIVA 473 (694)
Q Consensus 467 Ai~~v~~ 473 (694)
|+.-++.
T Consensus 246 Aa~lvL~ 252 (584)
T PRK13406 246 AARLVLA 252 (584)
T ss_pred HHHHHHH
Confidence 9987764
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.64 E-value=1.4e-07 Score=101.16 Aligned_cols=100 Identities=25% Similarity=0.308 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh-hhHHHHHHHHHHHhcCCeEEEEccccccccc
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~ 338 (694)
..+|++|+||+|||||+||.|+|+++ |.++.+++.++|...+... ........++..+ ...+|+||||..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 35799999999999999999999987 7889999998887654322 1112334444443 34699999997651
Q ss_pred cCCCCCCCChhHH-HHHHHHHhh-hcCccCCCCeEEEEecCC
Q 005480 339 RGTGIGGGNDERE-QTLNQLLTE-MDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 339 r~~~~~~~~~e~~-~~l~~LL~~-ld~~~~~~~ViVIaaTN~ 378 (694)
.+++.. .++..++.. +. .+...|.|||.
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl 260 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNF 260 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCC
Confidence 123332 344555432 22 23457778886
No 231
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.62 E-value=1.4e-07 Score=105.56 Aligned_cols=205 Identities=24% Similarity=0.362 Sum_probs=115.6
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHHHh---
Q 005480 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV--- 305 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~~~~~~~--- 305 (694)
.++|.+.....+.+.+..+... ...++++|++||||+++|+++... .+.||+.++|..+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~----------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS----------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC----------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 4677777777666655544322 347999999999999999999654 468999999987643321
Q ss_pred --hhhh-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc--Ccc----CCCCe
Q 005480 306 --GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNTGI 370 (694)
Q Consensus 306 --G~~~-------~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~~~V 370 (694)
|... .....+|..| .+++|||||||.+ +...+..+..++..-. ... ...++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVDV 275 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeece
Confidence 1100 0001112222 3579999999999 2334444444443211 000 12257
Q ss_pred EEEEecCCccccchhhcCCCccce-------eeeccCCCHHHHHH----HHHHhhcC----CC-----CCccccHHHHHH
Q 005480 371 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGSN----KK-----FDADVSLDVIAM 430 (694)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfdr-------~I~i~~Pd~~eR~~----Il~~~l~~----~~-----l~~dvdl~~lA~ 430 (694)
.+|++|+.+- .....+|+|.. .+.+..|+..+|.+ +++.++.+ .. +.++ .+..|..
T Consensus 276 rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~ 351 (441)
T PRK10365 276 RLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMDLLIH 351 (441)
T ss_pred EEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHh
Confidence 7888887632 12233444432 57888899888865 33333322 11 2221 2344444
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 005480 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (694)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~A 467 (694)
..---+.++|.++++.|...+ ....|+.+++...
T Consensus 352 ~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~ 385 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVLL---TGEYISERELPLA 385 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchh
Confidence 331234577777777766543 3456777776543
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=98.61 E-value=2.6e-07 Score=96.93 Aligned_cols=100 Identities=23% Similarity=0.361 Sum_probs=63.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh-hhHHHHHHHHHHHhcCCeEEEEcccccccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r 339 (694)
..+++|+||||||||+||.+++..+ |..+.++++.++...+... ....+...|... ...+++++|||++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC--
Confidence 3479999999999999999997654 7788888988887554221 112244455443 24567999999987521
Q ss_pred CCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
+.+....+.+++....+ +. -+|.|||.
T Consensus 179 -------~~~~~~~lf~li~~r~~---~~--s~iiTsn~ 205 (259)
T PRK09183 179 -------SQEEANLFFQVIAKRYE---KG--SMILTSNL 205 (259)
T ss_pred -------ChHHHHHHHHHHHHHHh---cC--cEEEecCC
Confidence 22333345555544321 22 25667875
No 233
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=1.2e-06 Score=96.44 Aligned_cols=205 Identities=21% Similarity=0.221 Sum_probs=131.8
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehhhHHH--
Q 005480 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE-- 302 (694)
Q Consensus 230 f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s~~~~-- 302 (694)
-..+.|.+..+..+++++..-.. ..-+..+++.|-||||||.+..-+-... ....++++|..+.+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 35678888888888877654222 2335679999999999999888664433 22447888875422
Q ss_pred --------HH----hhhh-hHHHHHHHHHH-Hhc-CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCC
Q 005480 303 --------MF----VGVG-ASRVRDLFKKA-KEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (694)
Q Consensus 303 --------~~----~G~~-~~~vr~lF~~A-~~~-aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (694)
.+ .+.+ .......|+.- .+. .+-++++||+|.|+.+.. .++..+ -++... .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~l-Fewp~l-p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTL-FEWPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeee-hhcccC-Cc
Confidence 11 1111 12233344433 223 367999999999974321 233332 233332 35
Q ss_pred CCeEEEEecCCccccchhhcC----CCccceeeeccCCCHHHHHHHHHHhhcCCCCCccc--cHHHHHHhCCCCcHHHHH
Q 005480 368 TGIIVIAATNRADILDSALLR----PGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRTPGFSGADLA 441 (694)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlR----pgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~lA~~t~G~sgadL~ 441 (694)
.++++||.+|..+.-|..|.| .+.-...+.|++++.++..+||+..+......... .++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 679999999988876665543 12233588999999999999999998877654433 36778888888886 565
Q ss_pred H---HHHHHHHHHHHhCC
Q 005480 442 N---LLNEAAILAGRRGK 456 (694)
Q Consensus 442 ~---lv~eAa~~A~~~~~ 456 (694)
. +|+.|...|....+
T Consensus 367 kaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKR 384 (529)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 4 55666666655443
No 234
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.59 E-value=7.2e-08 Score=109.49 Aligned_cols=204 Identities=27% Similarity=0.408 Sum_probs=121.5
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHH--hcCCCeeeeehhhHHHH-----Hhhh
Q 005480 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG--EAGVPFFSISGSEFVEM-----FVGV 307 (694)
Q Consensus 235 G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~--e~~~pfi~vs~s~~~~~-----~~G~ 307 (694)
+.+...+.+...+..+...+ -.+|+.|.|||||-.|||++-. +...||+.++|..+.+. ++|.
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~----------~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy 386 (606)
T COG3284 317 LLDPSRATLLRKAERVAATD----------LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGY 386 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcC----------CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhcc
Confidence 44555555554444433332 2699999999999999999943 45789999999876643 2222
Q ss_pred --------hhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh-----hcCccCCCCeEEEE
Q 005480 308 --------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDGFEGNTGIIVIA 374 (694)
Q Consensus 308 --------~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~-----ld~~~~~~~ViVIa 374 (694)
..+..+..+++|-. ..+|+|||..+ .-..+.-+.+.|.+ +.+-...-+|.||+
T Consensus 387 ~~GafTga~~kG~~g~~~~A~g---GtlFldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ 452 (606)
T COG3284 387 VAGAFTGARRKGYKGKLEQADG---GTLFLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIA 452 (606)
T ss_pred CccccccchhccccccceecCC---CccHHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEe
Confidence 22233444555543 37999999887 23344444455543 22222334689999
Q ss_pred ecCCccccchhhcCCCccce-------eeeccCCCHHHHHH---HHHHhh-cC----CCCCccccHHHHHHhCCCCcHHH
Q 005480 375 ATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE---ILKVHG-SN----KKFDADVSLDVIAMRTPGFSGAD 439 (694)
Q Consensus 375 aTN~p~~LD~aLlRpgRfdr-------~I~i~~Pd~~eR~~---Il~~~l-~~----~~l~~dvdl~~lA~~t~G~sgad 439 (694)
||+++= ..+.+.|||-. ...|.+|...+|.+ .|..++ +. ..++++.-...++...+| +-++
T Consensus 453 ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nire 528 (606)
T COG3284 453 ATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRE 528 (606)
T ss_pred ccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHH
Confidence 999732 35666677643 56778888888764 222222 22 223333323345556665 4577
Q ss_pred HHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 440 LANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 440 L~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
|.+++..++.++ ....|...|+...+-
T Consensus 529 l~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 529 LDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred HHHHHHHHHHcC---CCCeeEcccCCHHHH
Confidence 777777776555 444555555555543
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.56 E-value=5e-07 Score=94.56 Aligned_cols=70 Identities=29% Similarity=0.530 Sum_probs=50.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhhhhH-HHHH-HHHHHHhcCCeEEEEcccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGAS-RVRD-LFKKAKENAPCIVFVDEIDAV 335 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~~~~-~vr~-lF~~A~~~aP~ILfIDEID~l 335 (694)
+.+++|+||||||||+||-|+++++ |.++++++.++++...-..... .... +.+..+ ...+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 4589999999999999999998876 8999999999998754332211 1111 222122 3469999999776
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=2.7e-06 Score=88.22 Aligned_cols=228 Identities=17% Similarity=0.187 Sum_probs=141.3
Q ss_pred ccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeee--
Q 005480 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFS-- 294 (694)
Q Consensus 220 ~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~---~pfi~-- 294 (694)
+|.++..+-+++.+.+.++....++.+...-.-| ++++|||+|+||.+.+-++-+++. ++=+.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 3556677788999999999988888766522223 699999999999999999988762 21111
Q ss_pred ----------------eehhhHHH---HHhhhh-hHHHHHHHHHHHhcCC---------eEEEEccccccccccCCCCCC
Q 005480 295 ----------------ISGSEFVE---MFVGVG-ASRVRDLFKKAKENAP---------CIVFVDEIDAVGRQRGTGIGG 345 (694)
Q Consensus 295 ----------------vs~s~~~~---~~~G~~-~~~vr~lF~~A~~~aP---------~ILfIDEID~l~~~r~~~~~~ 345 (694)
++....++ .-.|.- .--++++.++..+..| .+++|.|.|.|.
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------- 140 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------- 140 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh---------
Confidence 11111111 011221 1235666666544332 588999999993
Q ss_pred CChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCc-ccc
Q 005480 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVS 424 (694)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvd 424 (694)
.+ ....|-..|+.+.++ +.+|..+|....+-+++++ |. ..|.++.|+.++...++...+.+.++.- +.-
T Consensus 141 --~d---AQ~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 141 --RD---AQHALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred --HH---HHHHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 22 333455566655544 5566667888888899998 43 3589999999999999998887766543 333
Q ss_pred HHHHHHhCCCCcHHHHHHH--HHHHHHHHHHhCCcccCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhh
Q 005480 425 LDVIAMRTPGFSGADLANL--LNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (694)
Q Consensus 425 l~~lA~~t~G~sgadL~~l--v~eAa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~va~hEaGhAvv~~~ 502 (694)
+..+|..+.| +++.. +-||.... +.. ........+...|.+.+||.+..++..-
T Consensus 211 l~rIa~kS~~----nLRrAllmlE~~~~~---n~~-----------------~~a~~~~i~~~dWe~~i~e~a~~i~~eQ 266 (351)
T KOG2035|consen 211 LKRIAEKSNR----NLRRALLMLEAVRVN---NEP-----------------FTANSQVIPKPDWEIYIQEIARVILKEQ 266 (351)
T ss_pred HHHHHHHhcc----cHHHHHHHHHHHHhc---ccc-----------------ccccCCCCCCccHHHHHHHHHHHHHhcc
Confidence 6677777654 34322 22222211 110 0011112244568889999998887643
No 237
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.5e-06 Score=93.65 Aligned_cols=130 Identities=21% Similarity=0.277 Sum_probs=93.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------------eeeeehhhHHHHHhhhhhHHHHHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~p-----------------------fi~vs~s~~~~~~~G~~~~~vr~lF~ 317 (694)
.+.|.++||+||.|+||+.+|+++|..+-+. |+.+...+ ..+ .-+...+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHH
Confidence 4567799999999999999999999866321 11111100 000 012345666655
Q ss_pred HHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccc
Q 005480 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (694)
Q Consensus 318 ~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd 393 (694)
.+.. ....|++||++|.+ .....|.||+.++. +..++++|..|+.++.|-|.+++ |.
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC- 159 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM--------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC- 159 (319)
T ss_pred HHhhCcccCCceEEEecchhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-
Confidence 5432 33469999999999 24578889999984 56678999999999999999999 66
Q ss_pred eeeeccCCCHHHHHHHHHH
Q 005480 394 RQVTVDVPDIRGRTEILKV 412 (694)
Q Consensus 394 r~I~i~~Pd~~eR~~Il~~ 412 (694)
..+.++.|+.++..+.+..
T Consensus 160 q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eeEeCCCCCHHHHHHHHHH
Confidence 4789999998888777764
No 238
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=5.8e-07 Score=83.92 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=70.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCC
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~--~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~ 342 (694)
+.++|+||+|+|||++++.++.... ..++++++.+.......... +.+.+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 3689999999999999999998876 78888888776542211110 223333222235689999999998
Q ss_pred CCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccch--hhcCCCccceeeeccCCCHHH
Q 005480 343 IGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS--ALLRPGRFDRQVTVDVPDIRG 405 (694)
Q Consensus 343 ~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~--aLlRpgRfdr~I~i~~Pd~~e 405 (694)
+.....+..+...- .++-+|.|+.....+.. +-.-+||.. .+++.+.+..|
T Consensus 74 -----~~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 12445555555421 22334443333222211 111245764 56777776654
No 239
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.52 E-value=1.2e-06 Score=100.09 Aligned_cols=212 Identities=19% Similarity=0.235 Sum_probs=120.7
Q ss_pred cccccccCCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
....|.++..+.+.+||+-..+-.++++..++.... +....+-+||+||||||||++++.+|++++..+....
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 345688899999999999998777777776654221 1222346889999999999999999999987766542
Q ss_pred h-hhHH------HHHhhhh------hH---HHHHH-HHHHHh-----------cCCeEEEEccccccccccCCCCCCCCh
Q 005480 297 G-SEFV------EMFVGVG------AS---RVRDL-FKKAKE-----------NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (694)
Q Consensus 297 ~-s~~~------~~~~G~~------~~---~vr~l-F~~A~~-----------~aP~ILfIDEID~l~~~r~~~~~~~~~ 348 (694)
. ..+. ..+.+.. .. ...++ +..++. ..+.||+|||+-.+... ...
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------~~~ 150 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------DTS 150 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-------hHH
Confidence 2 1110 0111110 01 12222 122221 24679999999876321 112
Q ss_pred hHHHHHHHHHhhhcCccCCC-CeEEEEe-c------CCc--------cccchhhcCCCccceeeeccCCCHHHHHHHHHH
Q 005480 349 EREQTLNQLLTEMDGFEGNT-GIIVIAA-T------NRA--------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (694)
Q Consensus 349 e~~~~l~~LL~~ld~~~~~~-~ViVIaa-T------N~p--------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~ 412 (694)
.....+.+++.. ... .+|+|.+ + |.. ..+++.++...+. .+|.|.+-...-.++-|+.
T Consensus 151 ~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 151 RFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHH
Confidence 333334443331 223 6666666 1 111 1355666653334 3677876666555444444
Q ss_pred hhcCC--------CCCcccc-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005480 413 HGSNK--------KFDADVS-LDVIAMRTPGFSGADLANLLNEAAILAG 452 (694)
Q Consensus 413 ~l~~~--------~l~~dvd-l~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (694)
.+... ......+ ++.|+..+ .+||+.+++.-...+.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 33221 1222222 56676654 4699999998888886
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.51 E-value=2.6e-07 Score=91.64 Aligned_cols=99 Identities=27% Similarity=0.395 Sum_probs=60.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh-hhHHHHHHHHHHHhcCCeEEEEcccccccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r 339 (694)
..|++|+||||||||+||.+++.++ |.++.+++.+++.+.+... ........++.... ..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP--- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee---
Confidence 4589999999999999999998866 8999999999998765322 11123344544433 3688999986541
Q ss_pred CCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
..++....+.+++..-- .+ + -.|.|||.
T Consensus 122 ------~~~~~~~~l~~ii~~R~---~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERY---ER-K-PTIITSNL 149 (178)
T ss_dssp --------HHHHHCTHHHHHHHH---HT---EEEEEESS
T ss_pred ------ecccccccchhhhhHhh---cc-c-CeEeeCCC
Confidence 23334444455554332 12 2 35558886
No 241
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.49 E-value=4.5e-07 Score=99.43 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=84.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CeeeeehhhHHHHHhhh------hhHHHHHHHHHHHhcCCeEEEEcccc
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFVEMFVGV------GASRVRDLFKKAKENAPCIVFVDEID 333 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~-pfi~vs~s~~~~~~~G~------~~~~vr~lF~~A~~~aP~ILfIDEID 333 (694)
...|+|++||||+|+|||+|.-.+...+.. .-..+...+|....-.. ...-+..+-+...+ ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457899999999999999999999887754 22233334444321110 11112222222222 23499999987
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC-ccccchhhcCCCccceeeeccCCCHHHHHHHHHH
Q 005480 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (694)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~ 412 (694)
.- +-.....+..|+..+- ..++++|+|+|+ |+.|-+.=+...+|-.. .++|+.
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~-----------I~~l~~ 191 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQRERFLPF-----------IDLLKR 191 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccHHHHHHH-----------HHHHHh
Confidence 64 1122346666766654 478999999996 45444333332334211 357777
Q ss_pred hhcCCCCCccccHHHH
Q 005480 413 HGSNKKFDADVSLDVI 428 (694)
Q Consensus 413 ~l~~~~l~~dvdl~~l 428 (694)
++.-..++...|+...
T Consensus 192 ~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 192 RCDVVELDGGVDYRRR 207 (362)
T ss_pred ceEEEEecCCCchhhh
Confidence 7777777777776553
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=92.46 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=48.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 334 (694)
..+++|+||||||||+|+.|+|+++ +..+++++..++...+.... ......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4589999999999999999999875 67888998877765432211 1222233333 2357999999954
No 243
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1e-06 Score=104.82 Aligned_cols=128 Identities=29% Similarity=0.335 Sum_probs=91.3
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH-----
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 302 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~----- 302 (694)
+.|+|++++...+.+.+..-+..-. . . +++-.++|.||.|+|||-||+++|... .-.|+.+++++|.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~-~-~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK-D-P--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC-C-C--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 5688999999988888865332110 0 0 345569999999999999999999977 46799999998765
Q ss_pred ----HHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC---------CCC
Q 005480 303 ----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NTG 369 (694)
Q Consensus 303 ----~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~---------~~~ 369 (694)
.|+|. .....+.+..++...+||+|||||.. + ...++.|+..+|...- -.+
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA-----------h---~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA-----------H---PDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc-----------C---HHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 12332 23446777777788899999999986 2 3455656655554321 226
Q ss_pred eEEEEecCC
Q 005480 370 IIVIAATNR 378 (694)
Q Consensus 370 ViVIaaTN~ 378 (694)
+|||.|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 899999986
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=8.4e-07 Score=96.07 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=90.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------------------eeeeehhhHHHHHhh-----hhhH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------------------------FFSISGSEFVEMFVG-----VGAS 310 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~p-------------------------fi~vs~s~~~~~~~G-----~~~~ 310 (694)
.+.|.++||+||+|+|||++|+++|+.+.+. |++++...-. .-.| -+..
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 3778899999999999999999999976431 2222211000 0001 1345
Q ss_pred HHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhh
Q 005480 311 RVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (694)
Q Consensus 311 ~vr~lF~~A~~----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 386 (694)
.+|++.+.+.. ....|++||++|.+ + ....+.+++.++... .++.+|.+|+.++.+.+.+
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d---~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESM-----------N---LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhC-----------C---HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHH
Confidence 67887777643 33469999999998 2 235566666666543 3466777888899999999
Q ss_pred cCCCccceeeeccCCCHHHHHHHHHH
Q 005480 387 LRPGRFDRQVTVDVPDIRGRTEILKV 412 (694)
Q Consensus 387 lRpgRfdr~I~i~~Pd~~eR~~Il~~ 412 (694)
.+ |. ..+.|++|+.++..+.|..
T Consensus 161 ~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 88 55 5678999998887777754
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=7.1e-07 Score=82.56 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=59.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCeeeeehhhHHH------HH---hh------hhhHHH-HHHHHHHH
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGSEFVE------MF---VG------VGASRV-RDLFKKAK 320 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~--------~~pfi~vs~s~~~~------~~---~G------~~~~~v-r~lF~~A~ 320 (694)
+.++++||||+|||++++.++... ..+++.+++..... .. .+ .....+ ..+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999977 78888888765431 11 01 112222 33333344
Q ss_pred hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 321 ~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
.....+|+|||+|.+. ....++.+...++ ..+-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 4444599999999983 1345666655545 3344556655543
No 246
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.33 E-value=1.2e-06 Score=102.07 Aligned_cols=188 Identities=28% Similarity=0.336 Sum_probs=110.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeee-ehhhHHHHHhhhhhHHHHHHH--H---HH---HhcCCeEEEEcccccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASRVRDLF--K---KA---KENAPCIVFVDEIDAV 335 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~v-s~s~~~~~~~G~~~~~vr~lF--~---~A---~~~aP~ILfIDEID~l 335 (694)
-+|||.|.||||||.|.+.+++-+...++.- .++. -+|.++..+++-+ + .| .-..+.|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 4799999999999999999998876555432 1111 1233333333322 1 11 0123579999999998
Q ss_pred ccccCCCCCCCChhHHHHHHHHHhhhcCcc-----------CCCCeEEEEecCCcc-------------ccchhhcCCCc
Q 005480 336 GRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD-------------ILDSALLRPGR 391 (694)
Q Consensus 336 ~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~p~-------------~LD~aLlRpgR 391 (694)
+++ ..+.+...|+... -+...-|+||+|... .|+++|++ |
T Consensus 396 -----------~~~---dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 -----------NEE---DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred -----------ChH---HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 222 2233444444221 123456888888643 57888999 9
Q ss_pred cceeee-ccCCCHHHHH----HHHHHhhcCCC------------------------------CCccc---cHHHHH----
Q 005480 392 FDRQVT-VDVPDIRGRT----EILKVHGSNKK------------------------------FDADV---SLDVIA---- 429 (694)
Q Consensus 392 fdr~I~-i~~Pd~~eR~----~Il~~~l~~~~------------------------------l~~dv---dl~~lA---- 429 (694)
||..+. .+.||.+.=+ .++..|..... ..+.+ ..+.|.
T Consensus 460 FDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv 539 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYV 539 (682)
T ss_pred CCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHH
Confidence 998554 4677665332 34444421100 00000 011110
Q ss_pred -Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHH
Q 005480 430 -MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (694)
Q Consensus 430 -~~----------t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~ 472 (694)
.+ +--.|.++|+.+++-|-..|..+-...|+.+|+++|+.-+.
T Consensus 540 ~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 540 EMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred HhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 01 12267889999999999999888888999999999887543
No 247
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.28 E-value=3e-06 Score=89.61 Aligned_cols=164 Identities=20% Similarity=0.313 Sum_probs=81.9
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCC-C--eeeeehhhHHHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-P--FFSISGSEFVEM 303 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~-p--fi~vs~s~~~~~ 303 (694)
++.|.++.=.-..-.....+++.+-. ..+++||+||+|||||.+++..-.+..- . ...++++....
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~----------~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt- 74 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLS----------NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT- 74 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHH----------CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH-
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHH----------cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC-
Confidence 34555555443333444555554322 1238999999999999999988765532 2 22344433211
Q ss_pred HhhhhhHHHHHHHHHH-----------HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC------
Q 005480 304 FVGVGASRVRDLFKKA-----------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------ 366 (694)
Q Consensus 304 ~~G~~~~~vr~lF~~A-----------~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~------ 366 (694)
...++.+.+.. ..+..+|+||||+..-....- +.....+.+.|++..- |+-.
T Consensus 75 -----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~y-----gtq~~iElLRQ~i~~~-g~yd~~~~~~ 143 (272)
T PF12775_consen 75 -----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKY-----GTQPPIELLRQLIDYG-GFYDRKKLEW 143 (272)
T ss_dssp -----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TT-----S--HHHHHHHHHHHCS-EEECTTTTEE
T ss_pred -----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCC-----CCcCHHHHHHHHHHhc-CcccCCCcEE
Confidence 12222222211 113457999999987532211 1112223444444321 2211
Q ss_pred --CCCeEEEEecCCcc---ccchhhcCCCccceeeeccCCCHHHHHHHHHHhhc
Q 005480 367 --NTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 367 --~~~ViVIaaTN~p~---~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
=.++.+|||.|.+. .+++.++| .| ..+.++.|+.+....|+...+.
T Consensus 144 ~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 144 KSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred EEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 12578889888532 47888887 56 5889999999998887766553
No 248
>PF05729 NACHT: NACHT domain
Probab=98.27 E-value=1.2e-05 Score=76.90 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=73.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc------C--CC-eeeeehhhHHHH------------HhhhhhHHHHHH-HHHHHhcC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA------G--VP-FFSISGSEFVEM------------FVGVGASRVRDL-FKKAKENA 323 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~------~--~p-fi~vs~s~~~~~------------~~G~~~~~vr~l-F~~A~~~a 323 (694)
-++|+|+||+|||++++.++... . .+ ++++++.++... ............ ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999998755 1 12 233444333221 011111112221 22234556
Q ss_pred CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCH
Q 005480 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (694)
+.+|+||.+|.+...... .........+.+++.. ....+..++|.+.+.....+...+... ..+.++.-+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~----~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQA----QILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCC----cEEEECCCCH
Confidence 789999999999542211 0001122223333332 112233333333222222222222221 4678888899
Q ss_pred HHHHHHHHHhhcC
Q 005480 404 RGRTEILKVHGSN 416 (694)
Q Consensus 404 ~eR~~Il~~~l~~ 416 (694)
++..++++.++++
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.27 E-value=3.5e-06 Score=79.86 Aligned_cols=110 Identities=23% Similarity=0.281 Sum_probs=63.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh----------------------hh--hhHHHHHHHHHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV----------------------GV--GASRVRDLFKKA 319 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~----------------------G~--~~~~vr~lF~~A 319 (694)
++|+||||+|||+++..++..+ +.+++++++........ .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 57777777654332110 00 001112234455
Q ss_pred HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 320 ~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
....|.+|+|||+..+.........+........+..++..+. ..++.+|.+++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6677899999999988543211001112223344444444433 34556666665443
No 250
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.25 E-value=9.7e-07 Score=79.10 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeE--------EEEEecccccCcce
Q 005480 65 LKKLVGNVGVGTALLGSG-KAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTI--------AIVEAISPELGNRV 135 (694)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~ 135 (694)
++|++++++++++++.+. .. ...+..+++||+|+++|++|+|++|.+.++... ..............
T Consensus 2 ~~~ili~~vi~~l~~~~~~~~----~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (110)
T PF06480_consen 2 ILYILIILVILLLFNFFFFNS----NNSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYT 77 (110)
T ss_dssp -----------------S----------SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT
T ss_pred cceehhHHHHHHHHHHHHhhc----ccCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccE
Confidence 578777777777666553 21 234677999999999999999999999866544 11111111111122
Q ss_pred eEEEEEcCC---CcHHHHHHHHhcCcceeec
Q 005480 136 QRVRVQLPG---LSQELLQKFREKNIDFAAH 163 (694)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 163 (694)
.......+. ..+.+.+.+.++|+.+...
T Consensus 78 ~~~~~~~~~~~~~~~~L~~~~~~~~v~~~~~ 108 (110)
T PF06480_consen 78 TFYTPSIPSVDSFDEFLIEALVEKGVKYESV 108 (110)
T ss_dssp --EEEE-S-HHHHHHHHHHHHHHTT--TTT-
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHCCCcccee
Confidence 222223221 2245677777888876554
No 251
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=4.9e-06 Score=89.18 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=83.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCe-eeeehhhHHHH-------HhhhhhHHHHHHHHHHHhcCCeEEEEcccc
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-FSISGSEFVEM-------FVGVGASRVRDLFKKAKENAPCIVFVDEID 333 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-i~vs~s~~~~~-------~~G~~~~~vr~lF~~A~~~aP~ILfIDEID 333 (694)
.+|+|++|||+-|.|||+|...+...+..+- ..+....|... +.|... -+..+-+... ..-.||+|||+.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~~~-~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADELA-AETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHHHH-hcCCEEEeeeee
Confidence 3789999999999999999999988775433 33444444321 223221 1111111111 122599999986
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC-ccccchhhcCCCccceeeeccCCCHHHHHHHHHH
Q 005480 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (694)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~ 412 (694)
-= +-....++..|+.+|- ..+|++++|+|. |+.|-+.=+.++||-..| ++++.
T Consensus 141 Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I-----------~li~~ 194 (367)
T COG1485 141 VT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERFLPAI-----------DLIKS 194 (367)
T ss_pred ec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhhHHHH-----------HHHHH
Confidence 52 1123346777777765 458999999995 666554434334553222 57788
Q ss_pred hhcCCCCCccccHH
Q 005480 413 HGSNKKFDADVSLD 426 (694)
Q Consensus 413 ~l~~~~l~~dvdl~ 426 (694)
++.-+.++...|..
T Consensus 195 ~~~v~~vD~~~DYR 208 (367)
T COG1485 195 HFEVVNVDGPVDYR 208 (367)
T ss_pred heEEEEecCCcccc
Confidence 87777776666653
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.23 E-value=1.9e-05 Score=90.29 Aligned_cols=125 Identities=30% Similarity=0.394 Sum_probs=71.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhH-----HHHHHHHHHH---hcCCeEEEEcccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS-----RVRDLFKKAK---ENAPCIVFVDEIDAV 335 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~-----~vr~lF~~A~---~~aP~ILfIDEID~l 335 (694)
.-+|||+|.||||||.+.+.+++-+..-.+. |+-.- .-+|.++. .-+++.-+.- -....|-+|||+|.+
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGs--SavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGS--SAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCcc--chhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhh
Confidence 3479999999999999999999877544332 22100 00111110 0111111110 012358899999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHhhh------cCc--cCCCCeEEEEecCCcc-------------ccchhhcCCCccce
Q 005480 336 GRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-------------ILDSALLRPGRFDR 394 (694)
Q Consensus 336 ~~~r~~~~~~~~~e~~~~l~~LL~~l------d~~--~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRfdr 394 (694)
++..+.+|.+.+++- -|+ .-+...-|+|+.|... .|+|.|++ |||.
T Consensus 539 -----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDL 605 (804)
T KOG0478|consen 539 -----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDL 605 (804)
T ss_pred -----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcE
Confidence 222333444433321 011 1134557899998522 57899999 9998
Q ss_pred ee-eccCCCHH
Q 005480 395 QV-TVDVPDIR 404 (694)
Q Consensus 395 ~I-~i~~Pd~~ 404 (694)
++ -++.||..
T Consensus 606 IylllD~~DE~ 616 (804)
T KOG0478|consen 606 IFLLLDKPDER 616 (804)
T ss_pred EEEEecCcchh
Confidence 54 56888876
No 253
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.23 E-value=3.3e-05 Score=79.70 Aligned_cols=183 Identities=22% Similarity=0.253 Sum_probs=115.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC---CCeeeeeh-----hhHHHHHhhh------------hhHHHHHHHHHHHh-cCCe
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-----SEFVEMFVGV------------GASRVRDLFKKAKE-NAPC 325 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~---~pfi~vs~-----s~~~~~~~G~------------~~~~vr~lF~~A~~-~aP~ 325 (694)
+.++|+.|+|||+++|++....+ +-.++++. +.+.+.++-+ ....-+.+.+..++ ..|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 77999999999999998766552 22334432 2222222111 12223344444444 4468
Q ss_pred EEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCC------Cccceeeecc
Q 005480 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP------GRFDRQVTVD 399 (694)
Q Consensus 326 ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRp------gRfdr~I~i~ 399 (694)
++++||.+.+. ......+..|.+.-++....-.++.||-.. |.+.+++| -|++-.|+++
T Consensus 134 ~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 134 VLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred EEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecC
Confidence 99999999983 222333433333333333334566666443 23322211 1777678888
Q ss_pred CCCHHHHHHHHHHhhcCCCCC----ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 005480 400 VPDIRGRTEILKVHGSNKKFD----ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (694)
Q Consensus 400 ~Pd~~eR~~Il~~~l~~~~l~----~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~ 465 (694)
+.+.++-...++.+++..... .+-.+..+...+.| .|+-+.++|..|...|...|...|+...+.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 889998888888888765433 33336677778887 588899999999999999999988876654
No 254
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.23 E-value=3e-07 Score=99.84 Aligned_cols=217 Identities=22% Similarity=0.253 Sum_probs=110.6
Q ss_pred ccccchHHHHHHHH-HHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH---------
Q 005480 232 DVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--------- 301 (694)
Q Consensus 232 dv~G~~e~k~~L~e-~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~--------- 301 (694)
+|.|.+.+|..+.= ++........ .....+-.-++||+|.||||||.|.+.++.-+...+ ++++..-.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 57788888775532 1111111000 001122334799999999999999999876554333 22322110
Q ss_pred -HHHhhhhhHHH-HHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc-----------CCC
Q 005480 302 -EMFVGVGASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNT 368 (694)
Q Consensus 302 -~~~~G~~~~~v-r~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~ 368 (694)
+...+. ..+ -..+-.|. ..|++|||+|.+- +. ....|++.|+.-. -+.
T Consensus 103 ~d~~~~~--~~leaGalvlad---~GiccIDe~dk~~-----------~~---~~~~l~eaMEqq~isi~kagi~~~l~a 163 (331)
T PF00493_consen 103 RDPVTGE--WVLEAGALVLAD---GGICCIDEFDKMK-----------ED---DRDALHEAMEQQTISIAKAGIVTTLNA 163 (331)
T ss_dssp CCGGTSS--ECEEE-HHHHCT---TSEEEECTTTT-------------CH---HHHHHHHHHHCSCEEECTSSSEEEEE-
T ss_pred cccccce--eEEeCCchhccc---Cceeeeccccccc-----------ch---HHHHHHHHHHcCeeccchhhhcccccc
Confidence 000000 000 01233332 3599999999982 22 2344555554311 133
Q ss_pred CeEEEEecCCcc-------------ccchhhcCCCccceeeec-cCCCHHHHHHHHHHhhcCCC----------------
Q 005480 369 GIIVIAATNRAD-------------ILDSALLRPGRFDRQVTV-DVPDIRGRTEILKVHGSNKK---------------- 418 (694)
Q Consensus 369 ~ViVIaaTN~p~-------------~LD~aLlRpgRfdr~I~i-~~Pd~~eR~~Il~~~l~~~~---------------- 418 (694)
+.-|+|++|... .+++.|++ |||..+.+ +.||.+.-..+.++.++...
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKP 241 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-T
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCc
Confidence 568999998654 47888999 99987654 67775544444443332211
Q ss_pred CCcccc--HHHHHH------------------------------hCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHH
Q 005480 419 FDADVS--LDVIAM------------------------------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (694)
Q Consensus 419 l~~dvd--l~~lA~------------------------------~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~ 466 (694)
++.+.- +-..++ .....|.+.|+.+++-|...|.-+-+..|+.+|+..
T Consensus 242 ~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~ 321 (331)
T PF00493_consen 242 ISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEE 321 (331)
T ss_dssp T-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHH
T ss_pred cCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHH
Confidence 110000 111111 012356778899999999999999999999999999
Q ss_pred HHHHH
Q 005480 467 SIDRI 471 (694)
Q Consensus 467 Ai~~v 471 (694)
|+.=+
T Consensus 322 Ai~L~ 326 (331)
T PF00493_consen 322 AIRLF 326 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98643
No 255
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.18 E-value=1.6e-05 Score=82.07 Aligned_cols=124 Identities=25% Similarity=0.311 Sum_probs=73.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~ 345 (694)
|..++||+|||||..++++|..+|.+++.++|++..+. ..+..+|.-+... .+.+++||++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl---------- 96 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL---------- 96 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS----------
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh----------
Confidence 77899999999999999999999999999999985542 4456666555443 379999999998
Q ss_pred CChhHHHHHHHHHhhh----cC-----------ccCCCCeEEEEecCC----ccccchhhcCCCccceeeeccCCCHHHH
Q 005480 346 GNDEREQTLNQLLTEM----DG-----------FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRGR 406 (694)
Q Consensus 346 ~~~e~~~~l~~LL~~l----d~-----------~~~~~~ViVIaaTN~----p~~LD~aLlRpgRfdr~I~i~~Pd~~eR 406 (694)
+.+.-.++.+.+..+ .. +.-+.+.-+..|.|. ...|++.|+. +-|.+.+..||....
T Consensus 97 -~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I 172 (231)
T PF12774_consen 97 -SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLI 172 (231)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHH
T ss_pred -hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHH
Confidence 223333333333322 11 011223344445553 3467887776 448899999998754
Q ss_pred HHHH
Q 005480 407 TEIL 410 (694)
Q Consensus 407 ~~Il 410 (694)
.+++
T Consensus 173 ~ei~ 176 (231)
T PF12774_consen 173 AEIL 176 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 256
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=6.1e-05 Score=80.11 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=82.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH-------H--hh----hhhHHHHHHHHHHHh----cC
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-------F--VG----VGASRVRDLFKKAKE----NA 323 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~-------~--~G----~~~~~vr~lF~~A~~----~a 323 (694)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+|..+... . .+ -+...+|++.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 3567789999999999999999999977442111122111100 0 11 124456666655532 33
Q ss_pred CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCC
Q 005480 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 401 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~P 401 (694)
.-|++||++|.+ .....|.||+.++. +..++++|..|+.++.+.|.+++ |.. .+.|+++
T Consensus 96 ~kv~ii~~ad~m--------------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM--------------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhc--------------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 469999999999 34577888888884 56678888889999999999998 552 4455543
No 257
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.14 E-value=1.9e-05 Score=85.70 Aligned_cols=160 Identities=20% Similarity=0.274 Sum_probs=91.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCee---eeehhhHHHHHh--------hhhh-----------HHHHHHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SISGSEFVEMFV--------GVGA-----------SRVRDLFKK 318 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi---~vs~s~~~~~~~--------G~~~-----------~~vr~lF~~ 318 (694)
..+|+|++|||..|||||+|.-.+-..+.. .. .+...+|....- ..+. .-+.-+-++
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH
Confidence 456999999999999999999988754421 11 122233322100 0000 001111111
Q ss_pred HHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC-ccccchhhcCCCccceeee
Q 005480 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVT 397 (694)
Q Consensus 319 A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~ 397 (694)
. ...-++|++||+..- +-...-+|++|...+- +.+|+++||+|+ |+.|-..=+.+.-|...
T Consensus 190 I-a~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR~~F~Pf-- 251 (467)
T KOG2383|consen 190 I-AEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQRENFIPF-- 251 (467)
T ss_pred H-hhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhhhhhhhH--
Confidence 1 122379999998653 1122335666666554 458999999997 66665443332233322
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCC-C--CcHH-HHHHHHHHHH
Q 005480 398 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTP-G--FSGA-DLANLLNEAA 448 (694)
Q Consensus 398 i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~-G--~sga-dL~~lv~eAa 448 (694)
-.+|+.++.-..+...+|....++... + |.+. |.+.++++-.
T Consensus 252 ---------I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 252 ---------IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred ---------HHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 367888888888888899884433221 1 3333 7777777765
No 258
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.13 E-value=1.1e-05 Score=91.38 Aligned_cols=222 Identities=18% Similarity=0.223 Sum_probs=125.6
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhh--hcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhh
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTA--IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~--lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G 306 (694)
-|-.|.|.+.+|.-+.-.+ +.-..++.. ..++-.-+|+++|.||||||-+.+++++-+-..++. ++..-. -.|
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSS--aAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASS--AAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccc--ccc
Confidence 3677889999998765322 222222222 223333479999999999999999999877655443 221100 011
Q ss_pred hhhHHHHH--HHHH---HH---hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc-----------CC
Q 005480 307 VGASRVRD--LFKK---AK---ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GN 367 (694)
Q Consensus 307 ~~~~~vr~--lF~~---A~---~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~ 367 (694)
-++.-+++ -++. |- -....|-+|||+|.+..+ .++ .+++.|+... -+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-----------dqv---AihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-----------DQV---AIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH-----------hHH---HHHHHHHhheehheecceEEeec
Confidence 11111111 0000 10 012358899999998311 112 2344444321 12
Q ss_pred CCeEEEEecCCcc-------------ccchhhcCCCccce-eeeccCCCHHHHHHHHHHhhcCCC-CCc------ccc--
Q 005480 368 TGIIVIAATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-FDA------DVS-- 424 (694)
Q Consensus 368 ~~ViVIaaTN~p~-------------~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~Il~~~l~~~~-l~~------dvd-- 424 (694)
.+.-||||+|+.. .+++++++ |||. .|-++-|+...-..|-++.+.... +.. ...
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 3446888998632 57889999 9998 456688877655444443322111 000 000
Q ss_pred ---------------------------HHHHHH--------hCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 005480 425 ---------------------------LDVIAM--------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (694)
Q Consensus 425 ---------------------------l~~lA~--------~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~ 469 (694)
+..+-. .+-+.|.++|+.+++-+-.+|.-.-++.||.+|+++|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 000000 122567888999998888888877888889999888886
Q ss_pred HH
Q 005480 470 RI 471 (694)
Q Consensus 470 ~v 471 (694)
-+
T Consensus 642 Ll 643 (764)
T KOG0480|consen 642 LL 643 (764)
T ss_pred HH
Confidence 44
No 259
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.13 E-value=9.9e-06 Score=81.67 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=64.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH-HHHhh----------------------hhhHHHHHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-EMFVG----------------------VGASRVRDLFK 317 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~-~~~~G----------------------~~~~~vr~lF~ 317 (694)
..-++++||||+|||+++..++.+. +.+++++++.++. +.+.. .....+..+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3458999999999999999987543 6778888886521 11100 00111333444
Q ss_pred HHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 318 ~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
.+.+..|++|+||-|.++....... ......+.+..++..|..+....++.++.+..
T Consensus 92 ~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4555678999999999985422110 11122233344444444443455666766644
No 260
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.12 E-value=3.2e-05 Score=86.74 Aligned_cols=210 Identities=15% Similarity=0.210 Sum_probs=110.1
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHH--hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~--l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
..+.++..+-+.+|++-...-..++++.+.. ...|. + ..+-+||+||+|||||+.++.++.++|..+...+
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l---~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----L---GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----C---CceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 4677788888999988665444444443331 11111 1 1234889999999999999999999998777654
Q ss_pred hh-------h------HHHHHhhhhhHHHHHHHHHHH------------hcCCeEEEEccccccccccCCCCCCCChhHH
Q 005480 297 GS-------E------FVEMFVGVGASRVRDLFKKAK------------ENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (694)
Q Consensus 297 ~s-------~------~~~~~~G~~~~~vr~lF~~A~------------~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~ 351 (694)
-. . +..................+. ..+|.+|+|||+-...... ..
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----------~~ 212 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----------DS 212 (634)
T ss_pred CCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----------hH
Confidence 11 1 111011111112222222221 1346799999997774221 22
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEe-cCCccccchhhcCC------CccceeeeccCCCHHHHHHHHHHhhcCCC------
Q 005480 352 QTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSALLRP------GRFDRQVTVDVPDIRGRTEILKVHGSNKK------ 418 (694)
Q Consensus 352 ~~l~~LL~~ld~~~~~~~ViVIaa-TN~p~~LD~aLlRp------gRfdr~I~i~~Pd~~eR~~Il~~~l~~~~------ 418 (694)
..+..+|.++-... ...+|+|.| ++.++..++..+.+ .|.+ .|.|.+-...-.++.|+..+....
T Consensus 213 ~~f~evL~~y~s~g-~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~ 290 (634)
T KOG1970|consen 213 ETFREVLRLYVSIG-RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGI 290 (634)
T ss_pred HHHHHHHHHHHhcC-CCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCC
Confidence 23333333322211 223333332 23334333332221 1443 567766666656666655543221
Q ss_pred -CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005480 419 -FDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (694)
Q Consensus 419 -l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (694)
......++.++.. +++||+.+++.-.+.+
T Consensus 291 k~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 291 KVPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred cCchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 1223334455543 3569999999888886
No 261
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.10 E-value=4.4e-05 Score=95.86 Aligned_cols=177 Identities=19% Similarity=0.302 Sum_probs=102.3
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCe---eeeehh----
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSISGS---- 298 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pf---i~vs~s---- 298 (694)
+...+++++|.+...+++.+.+.. .....+-+-|+||+|+|||+||+++++....+| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 445789999999999888877642 112245689999999999999999988764433 111110
Q ss_pred ---hH--------------HHHHhhh----h---hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHH
Q 005480 299 ---EF--------------VEMFVGV----G---ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (694)
Q Consensus 299 ---~~--------------~~~~~G~----~---~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 354 (694)
.+ ...+... . .... ...+.....++.+|++|+++.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH----------------HHH
Confidence 00 0000000 0 0000 1122223456789999998653 123
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccc--c-HHHHHHh
Q 005480 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--S-LDVIAMR 431 (694)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv--d-l~~lA~~ 431 (694)
..+....+.+. .+-.||.||...+. ++....++.+.++.|+.++..+++..++.+....++. + ...++..
T Consensus 312 ~~L~~~~~~~~--~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 312 DALAGQTQWFG--SGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALR 384 (1153)
T ss_pred HHHHhhCccCC--CCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 33333333232 33455556664433 3323467789999999999999999887544322211 1 2346667
Q ss_pred CCCCc
Q 005480 432 TPGFS 436 (694)
Q Consensus 432 t~G~s 436 (694)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 77764
No 262
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.01 E-value=9.1e-05 Score=77.91 Aligned_cols=157 Identities=20% Similarity=0.320 Sum_probs=83.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh--cCCCe---eeeehh------hHHHHH---hhh---------hhHHHHHHHHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGE--AGVPF---FSISGS------EFVEMF---VGV---------GASRVRDLFKKAK 320 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e--~~~pf---i~vs~s------~~~~~~---~G~---------~~~~vr~lF~~A~ 320 (694)
.+-|.|+|++|+|||+||+.+++. ....| +.++.+ ++.... .+. ........+....
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 446999999999999999999987 33222 222221 111111 111 1122333333444
Q ss_pred hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccC
Q 005480 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (694)
Q Consensus 321 ~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~ 400 (694)
...+++|+||+++... .+..+...+... ..+..||.||...... ...-. -+..++++.
T Consensus 99 ~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~-~~~~~---~~~~~~l~~ 156 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRSVA-GSLGG---TDKVIELEP 156 (287)
T ss_dssp CCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGGGG-TTHHS---CEEEEECSS
T ss_pred ccccceeeeeeecccc----------------cccccccccccc--cccccccccccccccc-ccccc---ccccccccc
Confidence 4558999999987751 222222222222 2244566677654322 11211 146789999
Q ss_pred CCHHHHHHHHHHhhcCCC----CCccccHHHHHHhCCCCcHHHHHHH
Q 005480 401 PDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSGADLANL 443 (694)
Q Consensus 401 Pd~~eR~~Il~~~l~~~~----l~~dvdl~~lA~~t~G~sgadL~~l 443 (694)
.+.++-.++|..+..... ...+.....++..+.|. |-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999998876544 11122357888888875 4444444
No 263
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.99 E-value=9.2e-06 Score=79.37 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eeeeehhhH
Q 005480 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 300 (694)
Q Consensus 233 v~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---fi~vs~s~~ 300 (694)
++|.++..+++...+. ... ...++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888888877765 221 2235689999999999999999997655322 666666555
No 264
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.96 E-value=1.9e-05 Score=87.49 Aligned_cols=223 Identities=21% Similarity=0.284 Sum_probs=129.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeee-hhhHHHHHhhhhhH
Q 005480 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS-GSEFVEMFVGVGAS 310 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs-~s~~~~~~~G~~~~ 310 (694)
+|.|.+++|+.|.-++----+...-..+.++-.-+|+|.|.||+-||-|.+++.+-+-..++..- +|. -+|.++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccchh
Confidence 68899999998876654422222112233333457999999999999999999987766555431 111 1233333
Q ss_pred HHHHHHHHH--Hh------cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh----h--cCc--cCCCCeEEEE
Q 005480 311 RVRDLFKKA--KE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----M--DGF--EGNTGIIVIA 374 (694)
Q Consensus 311 ~vr~lF~~A--~~------~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~----l--d~~--~~~~~ViVIa 374 (694)
-+++-..-- .+ ....|-+|||+|.+.... ...+.+..++ + -|+ .-|.+.-|+|
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-----------RtAIHEVMEQQTISIaKAGI~TtLNAR~sILa 487 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-----------RTAIHEVMEQQTISIAKAGINTTLNARTSILA 487 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-----------hHHHHHHHHhhhhhhhhhccccchhhhHHhhh
Confidence 332211100 00 112588999999983211 1122222211 1 111 1134567888
Q ss_pred ecCCcc-------------ccchhhcCCCcccee-eeccCCCHHHHHHHHHH----hhcCCCCCc---cccHHH------
Q 005480 375 ATNRAD-------------ILDSALLRPGRFDRQ-VTVDVPDIRGRTEILKV----HGSNKKFDA---DVSLDV------ 427 (694)
Q Consensus 375 aTN~p~-------------~LD~aLlRpgRfdr~-I~i~~Pd~~eR~~Il~~----~l~~~~l~~---dvdl~~------ 427 (694)
|.|... .|++||++ |||.. +-.+.||.+.-..+-++ |..+..... .++.+.
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~ 565 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS 565 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH
Confidence 888632 68899999 99984 44578876655444433 222211110 011110
Q ss_pred HHH----------------------------h-CCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 005480 428 IAM----------------------------R-TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (694)
Q Consensus 428 lA~----------------------------~-t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v 471 (694)
+++ . ..-.|++.|-.+++-+..+|.-|-...|..+|+++|+.-+
T Consensus 566 ~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 566 LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 000 0 1134788899999999999988888999999999999744
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.93 E-value=6.4e-05 Score=73.95 Aligned_cols=70 Identities=27% Similarity=0.323 Sum_probs=46.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh------hh-----------------------hh-----
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV-----------------------GA----- 309 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~------G~-----------------------~~----- 309 (694)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 77888887643222110 10 00
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccc
Q 005480 310 SRVRDLFKKAKENAPCIVFVDEIDAVG 336 (694)
Q Consensus 310 ~~vr~lF~~A~~~aP~ILfIDEID~l~ 336 (694)
.....+...+....|.+|+||++..+.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~ 108 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLL 108 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHh
Confidence 012334444456789999999999874
No 266
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.89 E-value=0.00022 Score=79.12 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCeeeeehhhHHHHHhhhhhHHHH
Q 005480 238 EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEMFVGVGASRVR 313 (694)
Q Consensus 238 e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e----~~~pfi~vs~s~~~~~~~G~~~~~vr 313 (694)
.....|..++.++.... ++++.||+|||||+++.+++.. .| -+++.+.++.....
T Consensus 194 ~k~~~L~rl~~fve~~~-----------Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNY-----------NLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------- 252 (449)
T ss_pred HHHHHHHhhHHHHhcCC-----------cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------
Confidence 33444555555655443 8999999999999999999776 24 34455555443211
Q ss_pred HHHHHHHhcCCeEEEEcccccc
Q 005480 314 DLFKKAKENAPCIVFVDEIDAV 335 (694)
Q Consensus 314 ~lF~~A~~~aP~ILfIDEID~l 335 (694)
..+... ....+|+|||+..+
T Consensus 253 ~~lg~v--~~~DlLI~DEvgyl 272 (449)
T TIGR02688 253 RQIGLV--GRWDVVAFDEVATL 272 (449)
T ss_pred HHHhhh--ccCCEEEEEcCCCC
Confidence 112211 33569999999886
No 267
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.89 E-value=6.7e-05 Score=84.78 Aligned_cols=78 Identities=24% Similarity=0.381 Sum_probs=56.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh------hh--------hhHHHHHHHHHHHhcC
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENA 323 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~------G~--------~~~~vr~lF~~A~~~a 323 (694)
+....-++|+|+||+|||+|+..+|... +.++++++..+..+... |. ....+..+++...+..
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 3344458999999999999999998755 67889998766544321 11 1123556677777778
Q ss_pred CeEEEEccccccccc
Q 005480 324 PCIVFVDEIDAVGRQ 338 (694)
Q Consensus 324 P~ILfIDEID~l~~~ 338 (694)
|.+|+||+|..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 999999999998643
No 268
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.0003 Score=75.05 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCee-------ee-ehhhHHH-H-----H---hh--hhhHHHHHHHHHHHh-
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------SI-SGSEFVE-M-----F---VG--VGASRVRDLFKKAKE- 321 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi-------~v-s~s~~~~-~-----~---~G--~~~~~vr~lF~~A~~- 321 (694)
+.|.++||+|| +||+.+|+++|..+-+.-- .. +|..+.. . + .| -....+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 6899999999986633210 00 1111110 0 0 01 123567777666533
Q ss_pred ---cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeec
Q 005480 322 ---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 398 (694)
Q Consensus 322 ---~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i 398 (694)
....|++||++|.+ .....|.||+.++. +..++++|..|+.++.+-|.+++ |. ..+.|
T Consensus 100 p~~~~~kV~II~~ad~m--------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM--------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 33469999999999 34578889999985 45668888889889999999999 65 45677
Q ss_pred cCCCHHHHHHHHH
Q 005480 399 DVPDIRGRTEILK 411 (694)
Q Consensus 399 ~~Pd~~eR~~Il~ 411 (694)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 55 4444445554
No 269
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.81 E-value=0.0012 Score=69.73 Aligned_cols=127 Identities=24% Similarity=0.287 Sum_probs=75.3
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCeeee--eh-----
Q 005480 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSI--SG----- 297 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~-----~pfi~v--s~----- 297 (694)
..+.|+.-+++.+...+.. +.++. -+.|--+=|||++||||.+.++.||+... .|++.. ..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 3578999999888777765 55543 23355566899999999999999999762 232211 00
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhh---hcCccCCCCeEEEE
Q 005480 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE---MDGFEGNTGIIVIA 374 (694)
Q Consensus 298 s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~---ld~~~~~~~ViVIa 374 (694)
..-++.|-.+-.+++++ .+...+.+|.++||.|.+ +...-+++.-+|.. .+|.. ..+-|+|.
T Consensus 156 ~~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~-frkaIFIf 220 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVD-FRKAIFIF 220 (344)
T ss_pred hHHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhc-----------CHhHHHHHhhhhcccccccccc-ccceEEEE
Confidence 11122232223333333 344556679999999998 33444555555542 22222 23456666
Q ss_pred ecCC
Q 005480 375 ATNR 378 (694)
Q Consensus 375 aTN~ 378 (694)
-+|.
T Consensus 221 LSN~ 224 (344)
T KOG2170|consen 221 LSNA 224 (344)
T ss_pred EcCC
Confidence 6664
No 270
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.81 E-value=9.7e-05 Score=81.51 Aligned_cols=78 Identities=27% Similarity=0.410 Sum_probs=54.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh------hh--------hhHHHHHHHHHHHhcC
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENA 323 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~------G~--------~~~~vr~lF~~A~~~a 323 (694)
+.+..-++|+|+||+|||+|+..+|... +.++++++..+-.+... +. ....+..+++.+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 3344458999999999999999998754 46888887754333211 11 1223456677777788
Q ss_pred CeEEEEccccccccc
Q 005480 324 PCIVFVDEIDAVGRQ 338 (694)
Q Consensus 324 P~ILfIDEID~l~~~ 338 (694)
|.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998543
No 271
>PHA00729 NTP-binding motif containing protein
Probab=97.80 E-value=7.5e-05 Score=76.60 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~ 289 (694)
.++|+|+||||||+||.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 272
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.80 E-value=5.8e-05 Score=77.31 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=40.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH-H--H-------HhhhhhHHHHHHHHHHH--hcCCeEEEEc
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-E--M-------FVGVGASRVRDLFKKAK--ENAPCIVFVD 330 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~-~--~-------~~G~~~~~vr~lF~~A~--~~aP~ILfID 330 (694)
.|.-+||||+||+|||++|+.+++. ..++..+.+.-. . . -.......+.+.+..+. ...+.+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3567999999999999999999742 122222221100 0 0 00011122333333332 2446799999
Q ss_pred ccccccc
Q 005480 331 EIDAVGR 337 (694)
Q Consensus 331 EID~l~~ 337 (694)
+|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999854
No 273
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00052 Score=73.60 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----------C--eeeeehhhHHHHHhhhhhHHHHHHHHHHHh-----cC
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------P--FFSISGSEFVEMFVGVGASRVRDLFKKAKE-----NA 323 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~-----------p--fi~vs~s~~~~~~~G~~~~~vr~lF~~A~~-----~a 323 (694)
+.++..||+|+.|.||+.+|++++..+-+ | +..++... . ......++++.+.... +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~--~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K--DLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C--cCCHHHHHHHHHHhccCCcccCC
Confidence 34557899999999999999999988622 2 12222000 0 1122456666555421 34
Q ss_pred CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCH
Q 005480 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (694)
.-|++||++|.+ .....|.||+.++. +..++++|..|+.++.+-+.+++ |. .++++.+|+.
T Consensus 91 ~KvvII~~~e~m--------------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT--------------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc--------------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 579999999888 23467788888885 45566777777788999999988 44 4689999988
Q ss_pred HHHHHHHHH
Q 005480 404 RGRTEILKV 412 (694)
Q Consensus 404 ~eR~~Il~~ 412 (694)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 877766654
No 274
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00017 Score=75.45 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=80.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCe-----ee-eehhhHHH------HHh-----hhhhHHHHHHHHHHHh---
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FS-ISGSEFVE------MFV-----GVGASRVRDLFKKAKE--- 321 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pf-----i~-vs~s~~~~------~~~-----G~~~~~vr~lF~~A~~--- 321 (694)
.+|..+||+||+|+||..+|.++|...-+.= =. -+|..+.. .++ .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3577899999999999999999998663211 00 01111111 000 1233455665554321
Q ss_pred --cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeecc
Q 005480 322 --NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (694)
Q Consensus 322 --~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~ 399 (694)
...-|++||++|.+ .....|.||+.++. +..++++|..|+.++.+-|.+++ |.. .+.++
T Consensus 85 e~~~~KV~II~~ae~m--------------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL--------------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh--------------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23579999999998 34578899999884 56778999999999999999999 653 34555
Q ss_pred CC
Q 005480 400 VP 401 (694)
Q Consensus 400 ~P 401 (694)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 54
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.77 E-value=0.00012 Score=74.80 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=63.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH----HHHhhh-------------------hhHHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGV-------------------GASRVRD 314 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~----~~~~G~-------------------~~~~vr~ 314 (694)
++...-++++||||+|||+++..+|.+. +.+++++++..+. ...... ....++.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 3334458999999999999999998744 7788888877221 111110 0011122
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 315 lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
+..... ..+.+|+||.+.++....... .....+..+.+.+++..+..+....++.|+.+..
T Consensus 100 ~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 100 AEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 222122 578999999999886432110 0112222334444444443333345566666543
No 276
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.76 E-value=6.5e-05 Score=68.09 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAG 289 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~ 289 (694)
|+|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 277
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.69 E-value=0.00024 Score=75.81 Aligned_cols=160 Identities=21% Similarity=0.365 Sum_probs=95.1
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHH---HHhcCCCeeeeehhhHHH-----
Q 005480 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI---AGEAGVPFFSISGSEFVE----- 302 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAl---A~e~~~pfi~vs~s~~~~----- 302 (694)
.+.|.....+.+.+++.. .-..+ ...|++.||.|+|||.+.... +.+.+-.|+.+....+..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456666666777777765 22222 236999999999999876655 335666776654432221
Q ss_pred ----------------HHhhhhhHHHHHHHHHHHh-----cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh
Q 005480 303 ----------------MFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (694)
Q Consensus 303 ----------------~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l 361 (694)
...|.....+..++...+. ..+.|.++||||-+++. .++..+..++..-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 0122233344444444432 22345556799998532 2344444444432
Q ss_pred cCccCCCCeEEEEecCCcc---ccchhhcCCCcccee-eeccCC-CHHHHHHHHHHhh
Q 005480 362 DGFEGNTGIIVIAATNRAD---ILDSALLRPGRFDRQ-VTVDVP-DIRGRTEILKVHG 414 (694)
Q Consensus 362 d~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfdr~-I~i~~P-d~~eR~~Il~~~l 414 (694)
. ..+.++.||+.|.+.+ .|.....+ ||... |++.+| +..+-..+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 2356799999998755 45677777 99874 665444 4666777777665
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00024 Score=73.11 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=30.9
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhh
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~ 299 (694)
|.+.+..++++|+||+|||+++..++.+ .+.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4444556999999999999999999654 377888777643
No 279
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.66 E-value=0.00022 Score=76.97 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHH----hh------------hhhHHHHHHHHHHHh
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VG------------VGASRVRDLFKKAKE 321 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~----~G------------~~~~~vr~lF~~A~~ 321 (694)
.+..+-++|+||||||||+||-.++.++ +.+++++++.+..+.. .| ..+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3334458999999999999988875544 6778888765433210 01 111222223333455
Q ss_pred cCCeEEEEccccccccccCC-CC-CCC-ChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 322 NAPCIVFVDEIDAVGRQRGT-GI-GGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 322 ~aP~ILfIDEID~l~~~r~~-~~-~~~-~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
..+.+|+||-+.++.++..- +. +.. .....+.+.+++..+...-...++.+|.+..
T Consensus 132 ~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 77899999999998753211 10 001 1122334456666565555566677776543
No 280
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00023 Score=68.86 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~ 288 (694)
+.+.-++++|+||+|||+++.-++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345569999999999999999999866
No 281
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=6.6e-05 Score=77.42 Aligned_cols=30 Identities=43% Similarity=0.746 Sum_probs=24.1
Q ss_pred hhcCCCCce--EEEEcCCCChHHHHHHHHHHh
Q 005480 258 AIGARIPKG--VLLVGPPGTGKTLLAKAIAGE 287 (694)
Q Consensus 258 ~lg~~~prg--VLL~GPpGTGKT~LArAlA~e 287 (694)
.+....++| |-|.||+|||||||.+.+|+-
T Consensus 21 ~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 21 DINLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred cceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344455555 889999999999999999983
No 282
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.64 E-value=0.00035 Score=70.91 Aligned_cols=116 Identities=21% Similarity=0.176 Sum_probs=61.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH----HHHhhh-------------------hhHHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGV-------------------GASRVRD 314 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~----~~~~G~-------------------~~~~vr~ 314 (694)
+....-++++|+||+|||+++..+|.+. +.++++++..... ....+. ....+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQE 95 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHH
Confidence 3334459999999999999999998765 6678788654211 111110 0111222
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 315 lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
+..... ..+++|+||-+..+........ .........+..++..|..+....++.||.+...
T Consensus 96 ~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 96 TETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 222222 3478999999999853211110 0111222334444444444434556666666543
No 283
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.60 E-value=0.00022 Score=75.38 Aligned_cols=113 Identities=25% Similarity=0.440 Sum_probs=67.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC----------CCeeeee-hhhHHHHHh-------h------hhhHHHHHHHHHHH
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSIS-GSEFVEMFV-------G------VGASRVRDLFKKAK 320 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~----------~pfi~vs-~s~~~~~~~-------G------~~~~~vr~lF~~A~ 320 (694)
++++|.||+|+|||+|.+++++... .++..++ ..++...+. + ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4899999999999999999998763 2332222 223322111 1 11122345666777
Q ss_pred hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchh--------hcCCCcc
Q 005480 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA--------LLRPGRF 392 (694)
Q Consensus 321 ~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a--------LlRpgRf 392 (694)
.+.|.+|++||+.. ...+..++..+. .+..+|++|+.++. ... ++..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCce
Confidence 78999999999521 123444444442 35678888875433 222 3334557
Q ss_pred ceeeecc
Q 005480 393 DRQVTVD 399 (694)
Q Consensus 393 dr~I~i~ 399 (694)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 7766654
No 284
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.60 E-value=0.0002 Score=69.35 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.+..|+|+|+||||||++|+++|..++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456899999999999999999999999988854
No 285
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.60 E-value=9.6e-05 Score=74.08 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=60.1
Q ss_pred EEEEcCCCChHHHHHHHH-HH---hcCCCeeeeehhhHH-HHH---hhhhhH-------------HHHHHHHHHHhcCCe
Q 005480 267 VLLVGPPGTGKTLLAKAI-AG---EAGVPFFSISGSEFV-EMF---VGVGAS-------------RVRDLFKKAKENAPC 325 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAl-A~---e~~~pfi~vs~s~~~-~~~---~G~~~~-------------~vr~lF~~A~~~aP~ 325 (694)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. +.+ .+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999987555 33 33777665 443222 110 000000 001111111111468
Q ss_pred EEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCC
Q 005480 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 402 (694)
Q Consensus 326 ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd 402 (694)
+|+|||++.+.+.|... .......+ +++.+.. ..++-||.+|..+..+|+.+++ +.+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998877541 01122333 4444322 4567888899999999999986 788777776554
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.58 E-value=0.00041 Score=71.62 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh------hh-------------------------h
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV-------------------------G 308 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~------G~-------------------------~ 308 (694)
...-+++.||||||||+++..++... +.++++++..+-.+.+. |. .
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 33459999999999999976554422 66777776543221110 00 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccccccc
Q 005480 309 ASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (694)
Q Consensus 309 ~~~vr~lF~~A~~~aP~ILfIDEID~l~ 336 (694)
...+..+.+......|.+++|||+-.+.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 1223344455555578999999998864
No 287
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.57 E-value=0.00031 Score=70.95 Aligned_cols=105 Identities=27% Similarity=0.426 Sum_probs=60.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh-----cCCCee-------------eeehhhHHH----HHhhhhhHHHHHHHHHHHhc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGE-----AGVPFF-------------SISGSEFVE----MFVGVGASRVRDLFKKAKEN 322 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e-----~~~pfi-------------~vs~s~~~~----~~~G~~~~~vr~lF~~A~~~ 322 (694)
+-++|.||+|+|||+|.|.++.. .|.++- .++..+-.. .+ .....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHHHHHhccCC
Confidence 46899999999999999999853 344321 111111110 11 11224567777776555
Q ss_pred CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 323 aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
.|.++++||.-.-. ...........++..+.. .+..+|.+|+.++.+.
T Consensus 105 ~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 105 EPVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred CCeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 78999999964311 112222334445555532 2456777788766543
No 288
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.0026 Score=71.00 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=74.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~ 345 (694)
-++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999988888775556666655544322111 11222233333334579999999997
Q ss_pred CChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHH
Q 005480 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (694)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~ 408 (694)
+..+..+..+..... .++++.+++...-....+-.=+||. ..+.+.+-+..+...
T Consensus 107 --~~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 235566666654221 1455555443322223333336785 567777888887754
No 289
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.51 E-value=0.00042 Score=74.99 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=64.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH-H---hh------------hhhHHHHHHHHHHHhcC
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-F---VG------------VGASRVRDLFKKAKENA 323 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~-~---~G------------~~~~~vr~lF~~A~~~a 323 (694)
..+-+.++||||||||+||-.++.++ +.++++++..+-.+. + .| ..+..+..+-...+...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 33458899999999999999886543 778888876442221 0 01 11112222222335567
Q ss_pred CeEEEEccccccccccCC-CCCCCC--hhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 324 PCIVFVDEIDAVGRQRGT-GIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~-~~~~~~--~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
+.+|+||-+.++.+.... +..+.. ....+.+.+.|..+...-...++.+|.+.
T Consensus 134 ~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 134 VDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred CCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 899999999999753211 111111 11223445555555554445566666653
No 290
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.51 E-value=0.00011 Score=84.16 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=45.4
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCeeeeeh
Q 005480 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (694)
Q Consensus 228 ~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~-~~pfi~vs~ 297 (694)
.-|+|+.|++++++.+.+.+.... ..++ ...+-++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa-----~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAA-----QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHH-----HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 358899999999998887663211 0011 112368999999999999999999866 346666544
No 291
>PRK08118 topology modulation protein; Reviewed
Probab=97.51 E-value=0.00016 Score=70.96 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=30.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s 298 (694)
-|+++||||+||||+|+.|+..++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999999988753
No 292
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.50 E-value=0.00027 Score=85.09 Aligned_cols=211 Identities=17% Similarity=0.211 Sum_probs=124.2
Q ss_pred cccccCCCCCCccccccchHHHHHHHHHHHHhcCch--hhhhhcCCCC-c-eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPE--RFTAIGARIP-K-GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (694)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~--~~~~lg~~~p-r-gVLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (694)
..+.+++.+....++.|....-..+.+-++..++++ .|...+-... + .++++||||+|||+.+..+|.+.+..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 456667777777888888766665555444433331 1222111111 1 36999999999999999999999999999
Q ss_pred eehhhHHHHHh-----hh--hhHHHHHHH---HHHHh-cCC-eEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc
Q 005480 295 ISGSEFVEMFV-----GV--GASRVRDLF---KKAKE-NAP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (694)
Q Consensus 295 vs~s~~~~~~~-----G~--~~~~vr~lF---~~A~~-~aP-~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (694)
.+.++...... +. +...+...| ..... ... -||++||+|.+.. . ....-..+.++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH---
Confidence 98876543221 11 112223333 00000 112 3899999999853 1 1112223444443
Q ss_pred CccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCC-ccccHHHHHHhCCCCcHHHHH
Q 005480 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLA 441 (694)
Q Consensus 363 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~ 441 (694)
....-+|+++|.........+. |...-++|+.|+...+..-+...+....+. .+-.++.+...+ ++||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2234577777765544443333 333458999999998877666665443322 233366777655 67888
Q ss_pred HHHHHHHHH
Q 005480 442 NLLNEAAIL 450 (694)
Q Consensus 442 ~lv~eAa~~ 450 (694)
+.++.-...
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 887776655
No 293
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.50 E-value=0.0025 Score=68.35 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=48.4
Q ss_pred cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhh---------------
Q 005480 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL--------------- 386 (694)
Q Consensus 322 ~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL--------------- 386 (694)
..+-||||||+|.+- .++ +.++|..+..+-...++++|.+.+.. .+..++
T Consensus 171 ~~~iViiIDdLDR~~----------~~~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCS----------PEE----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCC----------cHH----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 346799999999982 222 33344444434445778888887642 222222
Q ss_pred -cCCCccceeeeccCCCHHHHHHHHHHhhc
Q 005480 387 -LRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 387 -lRpgRfdr~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
+.. -|+..+.+|.|+..+...++...+.
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~ 264 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLE 264 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHH
Confidence 210 4666888999998888887776643
No 294
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.49 E-value=8.3e-05 Score=67.96 Aligned_cols=30 Identities=43% Similarity=0.904 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
|+|.||||+||||+|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998876543
No 295
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.48 E-value=0.00069 Score=76.82 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=53.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh------hh--------hhHHHHHHHHHHHhcC
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENA 323 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~------G~--------~~~~vr~lF~~A~~~a 323 (694)
+....-++|+|+||+|||+|+..++... +.++++++..+-.+... |. ....+..+.+.+.+..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 3334458999999999999999997654 46788888765443211 10 1123455666667778
Q ss_pred CeEEEEcccccccc
Q 005480 324 PCIVFVDEIDAVGR 337 (694)
Q Consensus 324 P~ILfIDEID~l~~ 337 (694)
|.+|+||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999999853
No 296
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00039 Score=76.60 Aligned_cols=110 Identities=19% Similarity=0.374 Sum_probs=63.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCeeeeehhhHH-------HH---Hhhh------hhHHHHHHHHHHHh
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFV-------EM---FVGV------GASRVRDLFKKAKE 321 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~----~-~pfi~vs~s~~~-------~~---~~G~------~~~~vr~lF~~A~~ 321 (694)
....++|+||+|+|||+++..+|..+ | ..+..+++..+. .. ..|. ....+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 34569999999999999999998763 3 345455544431 11 1111 111222233322
Q ss_pred cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccC-CCCeEEEEecCCccccchhhc
Q 005480 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALL 387 (694)
Q Consensus 322 ~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p~~LD~aLl 387 (694)
....+|+||..... .....+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 214 ~~~DlVLIDTaG~~-------------~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMS-------------QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCC-------------cccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 34578999987443 112234445555544332 345788888888887775543
No 297
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.46 E-value=0.00042 Score=85.17 Aligned_cols=135 Identities=30% Similarity=0.377 Sum_probs=92.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH--Hhhh-------hhHHHH-HHHHHHHhcCCeEEEEcccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGV-------GASRVR-DLFKKAKENAPCIVFVDEID 333 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~--~~G~-------~~~~vr-~lF~~A~~~aP~ILfIDEID 333 (694)
.+++||.|.||+|||+|..|+|+..|..++.++.++-.+- .+|. ++-+.+ .-|-.|.+.. ..+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhh
Confidence 4589999999999999999999999999999998865431 1221 111122 1233343332 478899986
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHhhhcC------------ccCCCCeEEEEecCCc------cccchhhcCCCcccee
Q 005480 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDG------------FEGNTGIIVIAATNRA------DILDSALLRPGRFDRQ 395 (694)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~------------~~~~~~ViVIaaTN~p------~~LD~aLlRpgRfdr~ 395 (694)
-. .+.++..|-.++|. |.-.+++.|.||-|.- ..|+..++. ||. +
T Consensus 1622 La--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-v 1684 (4600)
T COG5271 1622 LA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-V 1684 (4600)
T ss_pred hh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-e
Confidence 54 33344444444442 3446678999999863 468888988 895 6
Q ss_pred eeccCCCHHHHHHHHHHhhcC
Q 005480 396 VTVDVPDIRGRTEILKVHGSN 416 (694)
Q Consensus 396 I~i~~Pd~~eR~~Il~~~l~~ 416 (694)
|.++....++...|.......
T Consensus 1685 V~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EEecccccchHHHHHHhhCCc
Confidence 778888888777777766554
No 298
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.43 E-value=0.0018 Score=65.35 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=86.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH----hhhhhHHHHHHHHHHHhcCCeEEEEcccccccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF----VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~----~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r 339 (694)
|+-++++|+||+|||++|+.+|.+++.+++ ..+++.... .+.........|+.-+...+. ..+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~--~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~-----~~~~~~~-- 73 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV--LSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSM-----TDENIVK-- 73 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE--ehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCc-----chhHHHH--
Confidence 446899999999999999999999987653 344433211 111001111111111111100 0000100
Q ss_pred CCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC-CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCC
Q 005480 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 418 (694)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN-~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~ 418 (694)
+-.+..+.+...+......+-....-+|+-++. .++.++.... + . ...+.+..++.+..++=+........
T Consensus 74 -----~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~-~-~-v~~i~l~v~d~e~lr~Rl~~R~~~~~ 145 (197)
T PRK12339 74 -----GYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRT-N-N-IRAFYLYIRDAELHRSRLADRINYTH 145 (197)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHh-c-C-eEEEEEEeCCHHHHHHHHHHHhhccc
Confidence 000000111111111111111122224444444 4555543322 1 1 23456666666654333333322211
Q ss_pred CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHc
Q 005480 419 FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (694)
Q Consensus 419 l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~~ 473 (694)
.+...+...+. -.+++.+-+.....|...+-..|+..+++++++.++.
T Consensus 146 --~~~p~~~~~~~-----~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~ 193 (197)
T PRK12339 146 --KNSPGKRLAEH-----LPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLD 193 (197)
T ss_pred --CCCcHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 11112333332 2456666666777788888999999999999998764
No 299
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.41 E-value=0.00097 Score=69.92 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=49.0
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHH------hcCCCeeeeehhhHHHHH-hhhhhHHHHHHHHHHH--------hcCC
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAG------EAGVPFFSISGSEFVEMF-VGVGASRVRDLFKKAK--------ENAP 324 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~------e~~~pfi~vs~s~~~~~~-~G~~~~~vr~lF~~A~--------~~aP 324 (694)
..+....+||.||.|.||+.||+-|.. .+..+|+.++|..+...- +..--..++..|.-|+ ....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 344445799999999999999999944 457899999998764310 0000011222222211 1224
Q ss_pred eEEEEccccccc
Q 005480 325 CIVFVDEIDAVG 336 (694)
Q Consensus 325 ~ILfIDEID~l~ 336 (694)
.++|+|||..++
T Consensus 284 gmlfldeigelg 295 (531)
T COG4650 284 GMLFLDEIGELG 295 (531)
T ss_pred ceEehHhhhhcC
Confidence 599999999994
No 300
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.39 E-value=0.00056 Score=75.37 Aligned_cols=72 Identities=26% Similarity=0.368 Sum_probs=43.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC-----CCeeeeehhhH-------HHHH---------hhhhhHHHH---HHHHHHH--
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF-------VEMF---------VGVGASRVR---DLFKKAK-- 320 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~-----~pfi~vs~s~~-------~~~~---------~G~~~~~vr---~lF~~A~-- 320 (694)
.+|+||||+|||+|++.|++... +..+.+-..+. .... ......+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988663 33222222222 1111 111222333 3344443
Q ss_pred --hcCCeEEEEccccccccc
Q 005480 321 --ENAPCIVFVDEIDAVGRQ 338 (694)
Q Consensus 321 --~~aP~ILfIDEID~l~~~ 338 (694)
.+...+||||||+.+.+.
T Consensus 252 ~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHcCCCEEEEEEChHHHHHH
Confidence 245689999999998653
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.37 E-value=0.00059 Score=64.03 Aligned_cols=36 Identities=42% Similarity=0.690 Sum_probs=29.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~ 304 (694)
|+++||||+|||++|+.++...+ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 78999999999999999999988 4556666665543
No 302
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.36 E-value=0.0032 Score=68.49 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=93.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH------HH
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE------MF 304 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~------~~ 304 (694)
..+.+.+.+...+..++- +.. ...|..|.|+|..|||||.+.+.+-+..+.|.+.++|-+... ..
T Consensus 6 ~~v~~Re~qi~~L~~Llg---~~~------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLG---NNS------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhC---CCC------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 355666666666665542 211 145778999999999999999999999999999998866542 11
Q ss_pred ---h------h----hhhHHHHH---HHHH--HHhc--CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc
Q 005480 305 ---V------G----VGASRVRD---LFKK--AKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (694)
Q Consensus 305 ---~------G----~~~~~vr~---lF~~--A~~~--aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (694)
+ | .....+.+ +|.+ +..+ ..-.|++|.+|.+- +.....+..|+..-+ .
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr-----------D~~a~ll~~l~~L~e-l 144 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR-----------DMDAILLQCLFRLYE-L 144 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh-----------ccchHHHHHHHHHHH-H
Confidence 0 0 11122222 2333 2112 34578899999992 112223444433222 2
Q ss_pred cCCCCeEEEEecCCccccchhhcCCCccce-eeeccCCCHHHHHHHHHHhhc
Q 005480 365 EGNTGIIVIAATNRADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGS 415 (694)
Q Consensus 365 ~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~Il~~~l~ 415 (694)
-....+.+|.....++ +.-+.+-|-++- .+++|.|+.++...|+..--.
T Consensus 145 ~~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred hCCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 2222333333332222 112223344443 779999999999999875433
No 303
>PRK04296 thymidine kinase; Provisional
Probab=97.36 E-value=0.0006 Score=68.23 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=42.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeeeh--h--hHHH---HHhhhh-----hHHHHHHHHHHH--hcCCeEEE
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG--S--EFVE---MFVGVG-----ASRVRDLFKKAK--ENAPCIVF 328 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~--s--~~~~---~~~G~~-----~~~vr~lF~~A~--~~aP~ILf 328 (694)
-.+++||||+|||+++..++.++ +..++.+.. . .... ...|.. .....++++.+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 556665533 1 1100 011110 112344444443 34568999
Q ss_pred Ecccccc
Q 005480 329 VDEIDAV 335 (694)
Q Consensus 329 IDEID~l 335 (694)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999776
No 304
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.36 E-value=0.00052 Score=69.86 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=66.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---C------CCeeeeehhhHH--HHHh----h-----------------hh
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---G------VPFFSISGSEFV--EMFV----G-----------------VG 308 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~------~pfi~vs~s~~~--~~~~----G-----------------~~ 308 (694)
.+...-+.|+||||+|||+++..+|... + ..+++++..+-. +.+. . ..
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 3444458999999999999999997653 3 566777764321 0000 0 01
Q ss_pred hHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 309 ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 309 ~~~vr~lF~~A----~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
...+...++.. ....+++|+||-|..+....... .....+..+.+.+++..|..+....++.||.+..
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 11122222222 24577899999999886432110 0011234455666666666665555666665543
No 305
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.35 E-value=0.00095 Score=75.96 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHHH--hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 232 DVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~--l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.|.|...+|..+.-.+-- -+++..- ...+-.-+|||+|.||||||-+.|.+++-....++..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~k--hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGK--HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCC--ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 355666666655433321 1222110 1112223699999999999999999999887777653
No 306
>PRK13949 shikimate kinase; Provisional
Probab=97.34 E-value=0.0014 Score=64.49 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988765
No 307
>PRK07261 topology modulation protein; Provisional
Probab=97.34 E-value=0.0003 Score=69.25 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=29.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~ 299 (694)
|+++|+||+|||+||+.++...+.|++..+.-.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 899999999999999999999999988766433
No 308
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.34 E-value=0.0012 Score=67.36 Aligned_cols=97 Identities=25% Similarity=0.257 Sum_probs=55.6
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehhhHHHHH--------------hh---------------
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMF--------------VG--------------- 306 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s~~~~~~--------------~G--------------- 306 (694)
|.+....+|+.||||||||+|+..++.+. |-++++++..+-.+.+ ..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44445569999999999999999875432 7888888754332210 00
Q ss_pred ----hhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhc
Q 005480 307 ----VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (694)
Q Consensus 307 ----~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (694)
........+.+..+...+.+++||-+..+. ... ........+..+...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~-----~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD-----DPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS-----SGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC-----CHHHHHHHHHHHHHHHH
Confidence 011122333344455677999999999992 211 12333445555555553
No 309
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.33 E-value=0.00071 Score=69.32 Aligned_cols=116 Identities=23% Similarity=0.234 Sum_probs=65.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehhhHH--HHHh------h-----------------
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV--EMFV------G----------------- 306 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s~~~--~~~~------G----------------- 306 (694)
.+...-+.|+||||+|||+++..++... +..+++++..+-. ..+. +
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 3444458999999999999999997543 2577777764411 0000 0
Q ss_pred --hhhHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 307 --VGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 307 --~~~~~vr~lF~~A~~~-aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
.....+..+-+..... .+++|+||-+.++......+. ....+..+.+.+++..|..+....++.|+.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0001112222223344 789999999998853211100 011344456666666666555555666666543
No 310
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0013 Score=78.90 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=104.7
Q ss_pred ccccccc-hHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCeeeeehh
Q 005480 230 FDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGS 298 (694)
Q Consensus 230 f~dv~G~-~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~----------~~pfi~vs~s 298 (694)
++-++|. ++..+.+.+++ .... .++-+|.|.||+|||.++.-+|... +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL---~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEIL---SRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHH---hccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5666676 44444444433 3222 2468999999999999999999865 3445666665
Q ss_pred hHH--HHHhhhhhHHHHHHHHHHH-hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005480 299 EFV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (694)
Q Consensus 299 ~~~--~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (694)
.+. .++.|+.+.+++++.+.+. .....||||||++-+...... .......|. |..+- .+.++-+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~nl-Lkp~L---~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAANL-LKPLL---ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHHh-hHHHH---hcCCeEEEec
Confidence 443 3567888899999999887 455679999999999654332 112222332 22222 2445889998
Q ss_pred cCCcc-----ccchhhcCCCccceeeeccCCCHHHHHHHHHHhh
Q 005480 376 TNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (694)
Q Consensus 376 TN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l 414 (694)
|...+ .=||++-| ||+ .+.++.|+...-..||....
T Consensus 323 tT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhh
Confidence 86322 34899988 897 46788888776556665443
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.33 E-value=0.0039 Score=70.31 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
..|..++++|++|+|||+++..+|..+ +..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 357789999999999999999998765 566666666543
No 312
>PRK14532 adenylate kinase; Provisional
Probab=97.33 E-value=0.00074 Score=66.93 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
.|+|.||||+|||++|+.+|...+.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999986665 55555543
No 313
>PRK05973 replicative DNA helicase; Provisional
Probab=97.32 E-value=0.0013 Score=68.15 Aligned_cols=39 Identities=36% Similarity=0.292 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~ 299 (694)
..+..-++|.|+||+|||+++-.++.+. |.++++++..+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 3333458999999999999998886644 77888887653
No 314
>PF14516 AAA_35: AAA-like domain
Probab=97.32 E-value=0.011 Score=64.29 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=84.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH-------HHhh------------------------hhhHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MFVG------------------------VGASR 311 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~-------~~~G------------------------~~~~~ 311 (694)
-+.+.||..+|||++...+...+ +...+++++..+.. .|.. .....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 58999999999999999886544 77777777655321 0000 01112
Q ss_pred HHHHHHHH---HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCcc---CCCCe--EEEEecCCccccc
Q 005480 312 VRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNTGI--IVIAATNRADILD 383 (694)
Q Consensus 312 vr~lF~~A---~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---~~~~V--iVIaaTN~p~~LD 383 (694)
....|+.. ....|-||+|||||.+.... ......+..|-...+.-. .-..+ +++++|. +....
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~-~~~~~ 183 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTE-DYIIL 183 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcc-ccccc
Confidence 33344432 22568999999999995321 111222222222111111 11123 3333332 22221
Q ss_pred hhhcCCCccceeeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCC
Q 005480 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (694)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~ 435 (694)
..-.+|--+...|.++.-+.++-..+++.|-.. ..... ++.+-..|.|.
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGh 232 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGH 232 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCC
Confidence 112344333346667766788888888877433 22232 77788888775
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.32 E-value=0.0019 Score=66.85 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=30.4
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhh
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~ 299 (694)
|......+|++||||||||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4445556999999999999999877543 377888887554
No 316
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.31 E-value=0.00076 Score=75.21 Aligned_cols=140 Identities=29% Similarity=0.377 Sum_probs=70.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHH-----H--HH-hcCCeEEEEccccccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFK-----K--AK-ENAPCIVFVDEIDAVG 336 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~-----~--A~-~~aP~ILfIDEID~l~ 336 (694)
-+|||.|.|||.|+-|.+-+-.-+-+-++. |+.. +.-.|.+++-+|+--. + |. -....|++|||+|.+-
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 369999999999999999987765544443 2110 0011222222221100 0 00 0123599999999982
Q ss_pred cccCCCCCCCChhHH-HHHHHHHhhhcCc--cCCCCeEEEEecCCc-----------cccc--hhhcCCCccceeeeccC
Q 005480 337 RQRGTGIGGGNDERE-QTLNQLLTEMDGF--EGNTGIIVIAATNRA-----------DILD--SALLRPGRFDRQVTVDV 400 (694)
Q Consensus 337 ~~r~~~~~~~~~e~~-~~l~~LL~~ld~~--~~~~~ViVIaaTN~p-----------~~LD--~aLlRpgRfdr~I~i~~ 400 (694)
....-.-++..+ |++. +-+ -|+ .-|.+.-|+||.|.+ +.+| +.+++ |||..+-+.-
T Consensus 442 ---e~DRVAIHEAMEQQTIS-IAK--AGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD 513 (729)
T KOG0481|consen 442 ---EDDRVAIHEAMEQQTIS-IAK--AGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKD 513 (729)
T ss_pred ---chhhhHHHHHHHhhhHH-Hhh--hcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEec
Confidence 110000011111 1111 100 111 114456788888852 2333 77888 9998776653
Q ss_pred CCHHH-----HHHHHHHhhc
Q 005480 401 PDIRG-----RTEILKVHGS 415 (694)
Q Consensus 401 Pd~~e-----R~~Il~~~l~ 415 (694)
--.++ -+.++..|..
T Consensus 514 ~h~~~~D~~lAkHVI~vH~~ 533 (729)
T KOG0481|consen 514 EHDEERDITLAKHVINVHVS 533 (729)
T ss_pred cCcchhhhHHHHHhhhhhcc
Confidence 32222 3445666665
No 317
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.30 E-value=0.0016 Score=59.03 Aligned_cols=23 Identities=48% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~ 288 (694)
+++++||+|+|||+.+-.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888886655
No 318
>PRK10536 hypothetical protein; Provisional
Probab=97.30 E-value=0.00089 Score=70.02 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=32.3
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005480 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (694)
Q Consensus 229 ~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e 287 (694)
.+.-+.+.......+...+. +.+ -+++.||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~~~-----------lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---SKQ-----------LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---cCC-----------eEEEECCCCCCHHHHHHHHHHH
Confidence 44556666666666555442 211 5999999999999999999885
No 319
>PRK06762 hypothetical protein; Provisional
Probab=97.28 E-value=0.00093 Score=64.78 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=33.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
|+-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5678999999999999999999998766777777766653
No 320
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.26 E-value=0.00032 Score=73.71 Aligned_cols=101 Identities=21% Similarity=0.313 Sum_probs=63.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---eeeee-hhh
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSIS-GSE 299 (694)
Q Consensus 224 ~~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~p---fi~vs-~s~ 299 (694)
.....+++++.-.....+.+.+++...-. ....+++.||+|+|||++++++.....-. ++.+. ..+
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ccccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 44567899998877777777776665311 12379999999999999999999877433 33332 111
Q ss_pred HHHH------Hh-hhhhHHHHHHHHHHHhcCCeEEEEccccc
Q 005480 300 FVEM------FV-GVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (694)
Q Consensus 300 ~~~~------~~-G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 334 (694)
+.-. +. ........+++..+.+..|.+|+|+||..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 2100 00 11234567788888889999999999854
No 321
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.23 E-value=0.0024 Score=66.84 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGV 290 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~ 290 (694)
-++|.||+|+|||+|++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 4999999999999999999987743
No 322
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.21 E-value=0.002 Score=66.36 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=30.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehh
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s 298 (694)
|..+..-++|.|+||+|||+++..++... +.+++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 45555569999999999999999886543 7888888743
No 323
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.21 E-value=0.002 Score=60.31 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=41.0
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005480 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~ 288 (694)
..|.|++-+.+.+.+.+.. +.++. .+.|.-+-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5789999999998887765 55542 2334456699999999999999999975
No 324
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.20 E-value=0.0016 Score=68.31 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=29.6
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehh
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s 298 (694)
|.....-++|.||||+|||+++..+|... +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 33444468999999999999999886653 6778777763
No 325
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.19 E-value=0.0027 Score=64.82 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=58.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-----hcCCCeee--------------eehhhHHHHHhhhhhHHHHHHHH-HHHhcC
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAG-----EAGVPFFS--------------ISGSEFVEMFVGVGASRVRDLFK-KAKENA 323 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~-----e~~~pfi~--------------vs~s~~~~~~~G~~~~~vr~lF~-~A~~~a 323 (694)
++.++|+||.|+|||++.|.++. ..|.++.. +...+-...........++.+-. .+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 35799999999999999999973 23433221 11111011111111222222211 122356
Q ss_pred CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhh
Q 005480 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (694)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 386 (694)
|.+++|||+..-. ...+....+..++..+-. ....+..+|.+|+..+.+....
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 8999999985521 112233444445555432 1112346777888777665544
No 326
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.18 E-value=0.0007 Score=66.61 Aligned_cols=27 Identities=44% Similarity=0.882 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCe
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPF 292 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~---~~pf 292 (694)
.++|+|+||+||||+++.+...+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 38999999999999999998877 5554
No 327
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0011 Score=65.80 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
-|+|.||||+||||+|+.||+. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 555666655544
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0021 Score=71.26 Aligned_cols=129 Identities=15% Similarity=0.206 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCeeeeehhhHH-------HHH---hh------hhhHHHHHHHHHH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFV-------EMF---VG------VGASRVRDLFKKA 319 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~-------~~pfi~vs~s~~~-------~~~---~G------~~~~~vr~lF~~A 319 (694)
.|+.++|+||+|+|||+.+..+|..+ +..+..+++..+. ..| .| .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 36679999999999999999998754 3444444443321 111 11 1222333333333
Q ss_pred HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCC-CCeEEEEecCCccccchhhcCCC--ccceee
Q 005480 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPG--RFDRQV 396 (694)
Q Consensus 320 ~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~p~~LD~aLlRpg--Rfdr~I 396 (694)
....+|+||++...- .+. ..+..+...++..... ..++|+.+|.....+...+.+-. .++ .+
T Consensus 253 --~~~DlVLIDTaGr~~---------~~~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~ 317 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP---------KDF---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TV 317 (388)
T ss_pred --CCCCEEEEcCCCCCc---------cCH---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EE
Confidence 345799999987651 111 1244444444433323 45788888877777764443311 122 34
Q ss_pred eccCCCHHHH
Q 005480 397 TVDVPDIRGR 406 (694)
Q Consensus 397 ~i~~Pd~~eR 406 (694)
-+...|...+
T Consensus 318 I~TKlDet~~ 327 (388)
T PRK12723 318 IFTKLDETTC 327 (388)
T ss_pred EEEeccCCCc
Confidence 4455555443
No 329
>PRK09354 recA recombinase A; Provisional
Probab=97.16 E-value=0.0017 Score=70.92 Aligned_cols=112 Identities=22% Similarity=0.262 Sum_probs=61.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH-H---hh------------hhhHHHHHHHHHHHhcCC
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VG------------VGASRVRDLFKKAKENAP 324 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s~~~~~-~---~G------------~~~~~vr~lF~~A~~~aP 324 (694)
.+-++++||||||||+|+-.++.+ .+...++++..+-.+. + .| ..+..+..+-...+...+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 345889999999999999987654 3777888876543221 0 01 011112222222345678
Q ss_pred eEEEEccccccccccC-CCCCCC--ChhHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005480 325 CIVFVDEIDAVGRQRG-TGIGGG--NDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (694)
Q Consensus 325 ~ILfIDEID~l~~~r~-~~~~~~--~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (694)
.+|+||-+-++.+... .+..+. .....+.+.+.|..+...-...++.+|.+
T Consensus 140 ~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 140 DLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred CEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 9999999999865211 111011 11222344444444444434556666654
No 330
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.15 E-value=0.0014 Score=63.83 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=60.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeeehhh--------HHHHHhh-----hhhHHHHHHHHHHHhcCCeEEE
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE--------FVEMFVG-----VGASRVRDLFKKAKENAPCIVF 328 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s~--------~~~~~~G-----~~~~~vr~lF~~A~~~aP~ILf 328 (694)
...+.|.||+|+|||+|.+.+++...- --+.+++.+ .....++ .+..+.+-.+..|....|.+++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 335889999999999999999986521 011121111 1111011 1122345556677778899999
Q ss_pred EccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
+||-..- -+....+.+.+++.++.. + +..+|.+|+.++.+
T Consensus 106 lDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~~ 145 (163)
T cd03216 106 LDEPTAA----------LTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLDEV 145 (163)
T ss_pred EECCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 9996442 234455566666665531 2 34566667765543
No 331
>PRK13948 shikimate kinase; Provisional
Probab=97.14 E-value=0.0015 Score=65.23 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=34.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhh
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G 306 (694)
.|..|+|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 4578999999999999999999999999998554 44443333
No 332
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.12 E-value=0.00097 Score=67.12 Aligned_cols=97 Identities=25% Similarity=0.371 Sum_probs=53.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH----HhhhhhHHHHHHHHHHH---------hcCCeEEEE
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVGASRVRDLFKKAK---------ENAPCIVFV 329 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~----~~G~~~~~vr~lF~~A~---------~~aP~ILfI 329 (694)
-.++.||||||||++++.+...+ +..++.+..+.-... -.+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 58889999999999999986543 667776665432211 11111222222222211 123479999
Q ss_pred ccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
||+..+. ...+..++..... .+.++++++-.+.
T Consensus 100 DEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9998872 2355666665553 3456888887665
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.11 E-value=0.0039 Score=61.02 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGE 287 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e 287 (694)
-++|+||+|||||+|.|++|.-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 4999999999999999999983
No 334
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.08 E-value=0.0045 Score=63.20 Aligned_cols=41 Identities=27% Similarity=0.262 Sum_probs=30.6
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
|.+...-+++.|+||+|||+++..++.+. +.++++++..+-
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 33444468999999999999999887543 778887776443
No 335
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.08 E-value=0.00046 Score=74.07 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeeh-hhHH-------HHHhhhhhHHHHHHHHHHHhcCCeEEEEcc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG-SEFV-------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~-s~~~-------~~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 331 (694)
++++++||+|+|||++++++++.. +..++.+.- .++. ............++++.+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 479999999999999999998875 223333321 1111 000111222567888889899999999999
Q ss_pred cc
Q 005480 332 ID 333 (694)
Q Consensus 332 ID 333 (694)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 83
No 336
>PRK04040 adenylate kinase; Provisional
Probab=97.08 E-value=0.0061 Score=61.04 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCee
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA--GVPFF 293 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~--~~pfi 293 (694)
|+-++++|+||+|||++++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5579999999999999999999998 55554
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=97.06 E-value=0.004 Score=67.90 Aligned_cols=73 Identities=29% Similarity=0.375 Sum_probs=44.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH-------HHH---hhh----------hhHHHHHHHHHH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VGV----------GASRVRDLFKKA 319 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~-------~~~---~G~----------~~~~vr~lF~~A 319 (694)
.|+-++|+||||+|||+++..+|..+ +..+..+++..+. ..+ .|. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36679999999999999888887654 5556555554321 111 110 012233444455
Q ss_pred HhcCCeEEEEcccccc
Q 005480 320 KENAPCIVFVDEIDAV 335 (694)
Q Consensus 320 ~~~aP~ILfIDEID~l 335 (694)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555578998887655
No 338
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0034 Score=64.18 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=45.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--------CCCeeeeeh-hhHHHHHhhh-------------hhHHHHHHHHHHHhcC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG-SEFVEMFVGV-------------GASRVRDLFKKAKENA 323 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~--------~~pfi~vs~-s~~~~~~~G~-------------~~~~vr~lF~~A~~~a 323 (694)
+.|+.||||||||++.|-+|.-+ ...+..++- +++..-..|. ..-+-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 68999999999999999998855 223333332 2322211111 1122344566678899
Q ss_pred CeEEEEcccccc
Q 005480 324 PCIVFVDEIDAV 335 (694)
Q Consensus 324 P~ILfIDEID~l 335 (694)
|.|+++|||..-
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999553
No 339
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.04 E-value=0.0096 Score=72.83 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=81.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh-------hHHHHH---h-----hh---h------------hHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-------EFVEMF---V-----GV---G------------ASRVRDL 315 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s-------~~~~~~---~-----G~---~------------~~~vr~l 315 (694)
-++++||+|.|||+++...+...+ ++.-++.. .|...+ + +. . ...+..+
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 599999999999999999887766 65555442 111110 0 00 0 0112233
Q ss_pred HHHHHh-cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc-hhhcCCCccc
Q 005480 316 FKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD-SALLRPGRFD 393 (694)
Q Consensus 316 F~~A~~-~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD-~aLlRpgRfd 393 (694)
+..... ..|.+|+|||++.+- +....+.+..|+..+ ..++.+|.++.....+. ..+... +
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~---~ 174 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR---D 174 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---C
Confidence 333332 678999999999981 233344555666542 23333433443311121 111111 1
Q ss_pred eeeecc----CCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCc
Q 005480 394 RQVTVD----VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 436 (694)
Q Consensus 394 r~I~i~----~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~s 436 (694)
..+.+. .-+.++-.+++...+.. .+ ...+...+...|.|+.
T Consensus 175 ~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 175 QLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWA 219 (903)
T ss_pred cceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChH
Confidence 234455 55777888888765443 22 2334677888888763
No 340
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.03 E-value=0.0008 Score=66.98 Aligned_cols=69 Identities=28% Similarity=0.396 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCeeeeehh-hHHH---H----------HhhhhhHHHHHHHHHHHhcCCeEEE
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFVE---M----------FVGVGASRVRDLFKKAKENAPCIVF 328 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~--~pfi~vs~s-~~~~---~----------~~G~~~~~vr~lF~~A~~~aP~ILf 328 (694)
..++|.||+|+|||++++++++... ...+.+... ++.. . ..+.......++++.+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 4799999999999999999998652 122222110 1100 0 0011123456777778888899999
Q ss_pred Ecccc
Q 005480 329 VDEID 333 (694)
Q Consensus 329 IDEID 333 (694)
++|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99983
No 341
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.02 E-value=0.0011 Score=63.07 Aligned_cols=37 Identities=32% Similarity=0.668 Sum_probs=30.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~ 304 (694)
.|+|+|+||+|||++|+.+|..++.+++.. ..+....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~ 37 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQR 37 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHH
Confidence 389999999999999999999999888754 3444433
No 342
>PRK13947 shikimate kinase; Provisional
Probab=97.02 E-value=0.0006 Score=66.34 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
+|+|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 343
>PRK13946 shikimate kinase; Provisional
Probab=97.02 E-value=0.0021 Score=63.89 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
.++.|+|.|++|+|||++++.+|..+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3567999999999999999999999999998765
No 344
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0019 Score=63.55 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
+.|+|+|++|+|||++.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998654
No 345
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.02 E-value=0.0021 Score=69.49 Aligned_cols=113 Identities=23% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehhhH-H-HHH------hhh---------------hh
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF-V-EMF------VGV---------------GA 309 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s~~-~-~~~------~G~---------------~~ 309 (694)
....-+.|+||||+|||.|+..+|-.+ +..++|++..+- . +.+ .+. ..
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCH
Confidence 333458899999999999998876422 456777775441 1 100 000 00
Q ss_pred ----HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005480 310 ----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (694)
Q Consensus 310 ----~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (694)
..+..+-.......+.+|+||-|-++.+....+ .+...++++.+.+++..|..+....++.||.+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 111222222334568899999999886542221 11233445557777766666655556666654
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.0037 Score=61.97 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=62.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-------------CeeeeehhhHHHHHh------hh------hhHHHHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGV-------------PFFSISGSEFVEMFV------GV------GASRVRDLFKKAK 320 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~-------------pfi~vs~s~~~~~~~------G~------~~~~vr~lF~~A~ 320 (694)
-+.|.||+|+|||+|.+++....|- ++.++.-.++.+.+- .. +..+.+-.+..|.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral 102 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASEL 102 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHH
Confidence 4889999999999999999743321 122322212222110 00 1123444556666
Q ss_pred hcC--CeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeec
Q 005480 321 ENA--PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 398 (694)
Q Consensus 321 ~~a--P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i 398 (694)
... |.++++||--.- -+....+.+.+++..+. . .+..||.+|+.++.+ + ..|+.+.+
T Consensus 103 ~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~d~i~~l 161 (176)
T cd03238 103 FSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SADWIIDF 161 (176)
T ss_pred hhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hCCEEEEE
Confidence 677 899999996443 23334445555555442 1 244566677765432 2 35566655
Q ss_pred c
Q 005480 399 D 399 (694)
Q Consensus 399 ~ 399 (694)
.
T Consensus 162 ~ 162 (176)
T cd03238 162 G 162 (176)
T ss_pred C
Confidence 4
No 347
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.99 E-value=0.0019 Score=74.68 Aligned_cols=55 Identities=31% Similarity=0.373 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 311 ~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
+-|-.|....-++|.++||||.-.- -+++.+..+.++++. .-.++.||..++++.
T Consensus 521 qQRlafARilL~kP~~v~LDEATsA----------LDe~~e~~l~q~l~~-----~lp~~tvISV~Hr~t 575 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSA----------LDEETEDRLYQLLKE-----ELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhc----------cChHHHHHHHHHHHh-----hCCCCEEEEeccchh
Confidence 3455677777789999999997543 244566666666653 114567777777654
No 348
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.98 E-value=0.003 Score=63.80 Aligned_cols=125 Identities=26% Similarity=0.418 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHH
Q 005480 240 KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA 319 (694)
Q Consensus 240 k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A 319 (694)
+..+...|...-+| |.+....++|.|+-|+|||++.+.|+.+ ++.-+.... . ..... ...
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~-----~-~kd~~----~~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF-----D-DKDFL----EQL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC-----C-CcHHH----HHH
Confidence 45556666655555 4555667899999999999999999666 221111100 0 01111 112
Q ss_pred HhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh-cCccC---------CCCeEEEEecCCcccc-chhhcC
Q 005480 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFEG---------NTGIIVIAATNRADIL-DSALLR 388 (694)
Q Consensus 320 ~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l-d~~~~---------~~~ViVIaaTN~p~~L-D~aLlR 388 (694)
... -|+.|||++.+.++ ....+..+++.- +.+.. ....++|||||..+-| |+.--|
T Consensus 94 ~~~--~iveldEl~~~~k~-----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR 160 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR 160 (198)
T ss_pred HHh--HheeHHHHhhcchh-----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe
Confidence 222 38999999998421 223555555432 22211 2247899999987755 344445
Q ss_pred CCccceeeeccC
Q 005480 389 PGRFDRQVTVDV 400 (694)
Q Consensus 389 pgRfdr~I~i~~ 400 (694)
|| ..|.+..
T Consensus 161 --Rf-~~v~v~~ 169 (198)
T PF05272_consen 161 --RF-WPVEVSK 169 (198)
T ss_pred --EE-EEEEEcC
Confidence 77 3444443
No 349
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.97 E-value=0.0027 Score=68.67 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=65.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehhhHH--HHH------hhhhh--------------
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV--EMF------VGVGA-------------- 309 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s~~~--~~~------~G~~~-------------- 309 (694)
+....-++|+||||+|||.++-.+|..+ +..+++++..+-. +.+ .|...
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCC
Confidence 4444568899999999999999998653 3467788765411 000 00000
Q ss_pred -----HHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005480 310 -----SRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 310 -----~~vr~lF~~A~~-~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (694)
..+..+...... ..+.+|+||-|-++......+. +...++++.+.+++..+..+....++.||.+..
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222233 4567999999999864321111 112234555666666665554455666666543
No 350
>PLN02674 adenylate kinase
Probab=96.97 E-value=0.0034 Score=65.43 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
.+..++|.||||+||+++++.+|...+++. ++..+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 345699999999999999999999998654 455666543
No 351
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.96 E-value=0.001 Score=67.03 Aligned_cols=66 Identities=29% Similarity=0.470 Sum_probs=41.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCC----Ceeeeeh-hhHHH----H-----HhhhhhHHHHHHHHHHHhcCCeEEEEccc
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGV----PFFSISG-SEFVE----M-----FVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~----pfi~vs~-s~~~~----~-----~~G~~~~~vr~lF~~A~~~aP~ILfIDEI 332 (694)
++++||+|+|||+++++++..... .++.+.. .++.. . -++.......+.++.+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 789999999999999999887642 2222211 11110 0 01222223455666677778999999997
No 352
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.96 E-value=0.0038 Score=61.54 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s 298 (694)
-+|+.|+||+|||++|..++.+.+.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988888777654
No 353
>PRK03839 putative kinase; Provisional
Probab=96.96 E-value=0.00063 Score=67.00 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
-|+|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987653
No 354
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.96 E-value=0.0031 Score=67.86 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehhh-HH-----HHH--hhhhh--------------
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-FV-----EMF--VGVGA-------------- 309 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s~-~~-----~~~--~G~~~-------------- 309 (694)
+....-++++||||+|||+++-.+|..+ +..+++++..+ |. +.. .+...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCC
Confidence 3444458899999999999999997663 33788887655 11 000 01000
Q ss_pred --H---HHHHHHHHHHhc--CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 310 --S---RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 310 --~---~vr~lF~~A~~~--aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
. .+..+.+..... .+.+|+||-|-++....-.+. +...++++.+.+++..+..+....++.|+.+.
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 0 122223333333 367999999988754321111 11223445566666655555445566666554
No 355
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.95 E-value=0.004 Score=63.69 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=28.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeeh
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISG 297 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~ 297 (694)
|......++++||||+|||+++..++.+ .+.++++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3444556999999999999999987643 2567777765
No 356
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.94 E-value=0.0036 Score=65.82 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehh
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s 298 (694)
.....-++++||||||||+++-.+|.+ .|-++++++..
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 344445999999999999999988653 36677777754
No 357
>PRK00625 shikimate kinase; Provisional
Probab=96.93 E-value=0.00078 Score=66.60 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
.|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 358
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.92 E-value=0.0025 Score=64.30 Aligned_cols=109 Identities=27% Similarity=0.407 Sum_probs=58.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH-------HHH---hhh----------hhHHHHHHHHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VGV----------GASRVRDLFKKAK 320 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~-------~~~---~G~----------~~~~vr~lF~~A~ 320 (694)
|+-++|.||+|+|||+.+--+|..+ +..+-.+++..+. ..| .+. .....++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999888887654 4444444443221 111 111 1223445566665
Q ss_pred hcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccch
Q 005480 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (694)
Q Consensus 321 ~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (694)
...-.+|+||-...- ..+.+...-+..++..+ ....-.+|+.++-..+.++.
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHH
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHH
Confidence 555578998775332 11222233344444444 23334566666666666663
No 359
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.90 E-value=0.0019 Score=70.67 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=44.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----Ceeeee-hhhHHH---------HHhhhhhHHHHHHHHHHHhcCCeEEEEcc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSIS-GSEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~----pfi~vs-~s~~~~---------~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 331 (694)
.++++||+|+|||++.+++.+...- .++.+. ..++.. .-+|.......+.++.+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 5899999999999999999886642 233331 112210 00122222356667777788999999999
Q ss_pred cc
Q 005480 332 ID 333 (694)
Q Consensus 332 ID 333 (694)
+.
T Consensus 204 ir 205 (343)
T TIGR01420 204 MR 205 (343)
T ss_pred CC
Confidence 83
No 360
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.90 E-value=0.0033 Score=68.75 Aligned_cols=113 Identities=23% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehhh------HHHHH--hhhh---------------h
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGVG---------------A 309 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s~------~~~~~--~G~~---------------~ 309 (694)
....-..|+||||||||.|+..+|-.. +..+++++... +.+.. .|.. .
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCH
Confidence 333447899999999999999886432 24667776643 11100 0000 0
Q ss_pred ----HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005480 310 ----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (694)
Q Consensus 310 ----~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (694)
..+..+-.......+.+|+||-|-++.+....+. +...++++.+.+++..|..+....++.||.+
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 1112222223345688999999999865432221 1223456667777776655544555666654
No 361
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.90 E-value=0.0037 Score=74.62 Aligned_cols=114 Identities=23% Similarity=0.267 Sum_probs=64.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH---hcCCCeeeeehhhHHH-HH---hhh------------hhHHHHHHHHHHHhc
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE-MF---VGV------------GASRVRDLFKKAKEN 322 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~---e~~~pfi~vs~s~~~~-~~---~G~------------~~~~vr~lF~~A~~~ 322 (694)
...+-++++||||||||+|+..++. ..|.++++++..+-.. .+ .|. .+..+..+-...+..
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 3344589999999999999976644 3366777776554222 00 010 111111122223456
Q ss_pred CCeEEEEccccccccccC-CCCCCCC--hhHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005480 323 APCIVFVDEIDAVGRQRG-TGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (694)
Q Consensus 323 aP~ILfIDEID~l~~~r~-~~~~~~~--~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (694)
.+.+|+||-+.++..+.. .+..+.. ...++.++++|..|..+-...++.+|.+
T Consensus 138 ~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 138 ALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred CCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 789999999999975221 1111111 1233445666666666655666666665
No 362
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.89 E-value=0.037 Score=59.79 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=68.3
Q ss_pred HHHHHHHHHh--c-CCeEEEEccccccccccCCCC---CCCChhHHHHHHHHHhhhcCccC-CCCeEE--EEecCC---c
Q 005480 312 VRDLFKKAKE--N-APCIVFVDEIDAVGRQRGTGI---GGGNDEREQTLNQLLTEMDGFEG-NTGIIV--IAATNR---A 379 (694)
Q Consensus 312 vr~lF~~A~~--~-aP~ILfIDEID~l~~~r~~~~---~~~~~e~~~~l~~LL~~ld~~~~-~~~ViV--IaaTN~---p 379 (694)
+..++++.+. . .|.++-||++.++.....-.. ..-+...-.....|+..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 4445555433 2 477888999999976522111 11122333444555544332222 334444 555532 3
Q ss_pred c--ccchhhcCCCc------cc-------------eeeeccCCCHHHHHHHHHHhhcCCCCCc----cccHHHHHHhCCC
Q 005480 380 D--ILDSALLRPGR------FD-------------RQVTVDVPDIRGRTEILKVHGSNKKFDA----DVSLDVIAMRTPG 434 (694)
Q Consensus 380 ~--~LD~aLlRpgR------fd-------------r~I~i~~Pd~~eR~~Il~~~l~~~~l~~----dvdl~~lA~~t~G 434 (694)
. .++.++....- |. ..|.++..+.+|-+.+++.+....-+.. ..-.+.+...+ |
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~ 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-N 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-C
Confidence 3 45555553211 21 1578888899999999998876654432 11133333333 4
Q ss_pred CcHHHHHH
Q 005480 435 FSGADLAN 442 (694)
Q Consensus 435 ~sgadL~~ 442 (694)
.+++++..
T Consensus 301 GNp~el~k 308 (309)
T PF10236_consen 301 GNPRELEK 308 (309)
T ss_pred CCHHHhcc
Confidence 56776653
No 363
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.012 Score=65.70 Aligned_cols=111 Identities=17% Similarity=0.299 Sum_probs=59.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehhhHHH-------HH---hhh---hhHHHHHHHHHHHhcCCeE
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE-------MF---VGV---GASRVRDLFKKAKENAPCI 326 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s~~~~-------~~---~G~---~~~~vr~lF~~A~~~aP~I 326 (694)
++-+++.||+|+|||+++..+|... |..+..+++..+.. .| .+. ....+..+.+.+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999998754 44455555544321 11 111 1122334444444445678
Q ss_pred EEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCc---cCCCCeEEEEecCCccccchhh
Q 005480 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---EGNTGIIVIAATNRADILDSAL 386 (694)
Q Consensus 327 LfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~---~~~~~ViVIaaTN~p~~LD~aL 386 (694)
|+||=.... ..+. ..+..|...++.+ .....++|+.+|...+.+....
T Consensus 303 VLIDTaGr~---------~rd~---~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 303 ILIDTAGYS---------HRNL---EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEeCCCCC---------ccCH---HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 887753221 0111 2333333333222 2234577777777766665444
No 364
>PRK04328 hypothetical protein; Provisional
Probab=96.88 E-value=0.0085 Score=62.59 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=28.9
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCeeeeehh
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e---~~~pfi~vs~s 298 (694)
|.+....+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 3444456999999999999998887543 36777777653
No 365
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.007 Score=66.63 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=85.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--CCCeeeeehhhHHHHHhhh--------------hhHHHHHHHHHHHhcCCeEEEE
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEMFVGV--------------GASRVRDLFKKAKENAPCIVFV 329 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~--~~pfi~vs~s~~~~~~~G~--------------~~~~vr~lF~~A~~~aP~ILfI 329 (694)
-+|+-|.||.|||+|.-.+|..+ ..+++|+++.+-....-.. .+.++.++.+.+....|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 48889999999999888876655 3389999998765432111 2345778888888999999999
Q ss_pred ccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC-ccccchhhcCCCccceeeeccCCCHHHHHH
Q 005480 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (694)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~ 408 (694)
|-|..+....-.+..++-......-.+|...-. ..+..+++++=-.. -..--|.++- +-.|-+++|.- |.....+
T Consensus 175 DSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFEG-d~~~~~R 250 (456)
T COG1066 175 DSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFEG-DRHSRYR 250 (456)
T ss_pred eccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchhee-eeeeEEEEEec-cCCCcee
Confidence 999999765543333332222223333332211 11223344442222 2222343433 23455555543 3334455
Q ss_pred HHHHhhcCCCC
Q 005480 409 ILKVHGSNKKF 419 (694)
Q Consensus 409 Il~~~l~~~~l 419 (694)
||+.+-.++..
T Consensus 251 iLR~vKNRFG~ 261 (456)
T COG1066 251 ILRSVKNRFGA 261 (456)
T ss_pred eeehhcccCCc
Confidence 66655444443
No 366
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.88 E-value=0.0011 Score=65.30 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=32.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
+-++|+|+||+|||++|+.++...+.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 35899999999999999999999988888776665544
No 367
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.87 E-value=0.0056 Score=60.88 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 005480 267 VLLVGPPGTGKTLLAKAIA 285 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA 285 (694)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 368
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.87 E-value=0.0029 Score=59.40 Aligned_cols=30 Identities=33% Similarity=0.757 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
|.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 369
>PRK10867 signal recognition particle protein; Provisional
Probab=96.87 E-value=0.02 Score=64.60 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehhhHHHH----H------hh----------hhhHHHHHHHH
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEM----F------VG----------VGASRVRDLFK 317 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s~~~~~----~------~G----------~~~~~vr~lF~ 317 (694)
..|.-++++||+|+|||+++..+|..+ |..+..+++..+... + .+ ......++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999777776643 667777777643221 0 00 11222344555
Q ss_pred HHHhcCCeEEEEcccccc
Q 005480 318 KAKENAPCIVFVDEIDAV 335 (694)
Q Consensus 318 ~A~~~aP~ILfIDEID~l 335 (694)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666778888775443
No 370
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.86 E-value=0.0061 Score=61.77 Aligned_cols=127 Identities=23% Similarity=0.340 Sum_probs=77.7
Q ss_pred hcCchhhhhhcCCCCce--EEEEcCCCChHHHHHHHHHHhc---CCCeeeeehh----hHHH-----------HH-----
Q 005480 250 LKKPERFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS----EFVE-----------MF----- 304 (694)
Q Consensus 250 l~~p~~~~~lg~~~prg--VLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s----~~~~-----------~~----- 304 (694)
..+.+.-+++|.-.|.| +++.|+.|||||.|.+.++--. +..+.+++.. +|.. .+
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 33445556777766665 8899999999999999997633 4445444432 1111 00
Q ss_pred -------------hhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeE
Q 005480 305 -------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (694)
Q Consensus 305 -------------~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (694)
.......+..+.+..+.....+|+||-+..+... + ..+.+++++..+..+....+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~---------~-~~~~vl~fm~~~r~l~d~gKvI 161 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY---------D-SEDAVLNFMTFLRKLSDLGKVI 161 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc---------c-cHHHHHHHHHHHHHHHhCCCEE
Confidence 0112223444455555555679999999988532 1 2345566677776666666665
Q ss_pred EEEecCCccccchhhcC
Q 005480 372 VIAATNRADILDSALLR 388 (694)
Q Consensus 372 VIaaTN~p~~LD~aLlR 388 (694)
++ |-+|+.++.+.+-
T Consensus 162 il--Tvhp~~l~e~~~~ 176 (235)
T COG2874 162 IL--TVHPSALDEDVLT 176 (235)
T ss_pred EE--EeChhhcCHHHHH
Confidence 55 4467788877765
No 371
>PLN02200 adenylate kinase family protein
Probab=96.84 E-value=0.0014 Score=67.99 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=33.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
+.+.|.-+++.||||+|||++|+.+|...|++ .+++++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34556679999999999999999999998865 4666666643
No 372
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.83 E-value=0.0029 Score=77.72 Aligned_cols=179 Identities=21% Similarity=0.222 Sum_probs=100.3
Q ss_pred CCCceEEEEcCCCChHHHH-HHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhc---------------CCe
Q 005480 262 RIPKGVLLVGPPGTGKTLL-AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN---------------APC 325 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~L-ArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~---------------aP~ 325 (694)
..-|+++++||||+|||+| .-++-++....|++++.+.-.. +...++ ++++-... .--
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLS-VLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHH-HHHhhceeeccCCeEEEccCcchhhe
Confidence 3456999999999999985 5677777777787776553211 111222 22221111 114
Q ss_pred EEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCC--------CCeEEEEecCCccccchhhcCCCccce---
Q 005480 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRADILDSALLRPGRFDR--- 394 (694)
Q Consensus 326 ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~--------~~ViVIaaTN~p~~LD~aLlRpgRfdr--- 394 (694)
|||.|||. +-..+.-. .+..--.+.+|+ +-+||... .++++.|++|.+..... .-=+.||-+
T Consensus 1566 VLFcDeIn-Lp~~~~y~----~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v 1638 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYY----PPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPV 1638 (3164)
T ss_pred EEEeeccC-CccccccC----CCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCce
Confidence 99999998 42221110 100000111222 23444332 37899999998764331 111235544
Q ss_pred eeeccCCCHHHHHHHHHHhhcCCCCCc-c------------ccH--------HHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005480 395 QVTVDVPDIRGRTEILKVHGSNKKFDA-D------------VSL--------DVIAMRTPGFSGADLANLLNEAAILAGR 453 (694)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~~~l~~~~l~~-d------------vdl--------~~lA~~t~G~sgadL~~lv~eAa~~A~~ 453 (694)
.+.+..|.......|.+.++.+..+-- + +.+ ....+..-||+|+||-..++.....|..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT 1718 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAET 1718 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhc
Confidence 678899999999998887765432211 1 000 0011122579999999988877666643
No 373
>PTZ00035 Rad51 protein; Provisional
Probab=96.83 E-value=0.0047 Score=67.47 Aligned_cols=114 Identities=21% Similarity=0.234 Sum_probs=64.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehhhH------HHHH--hhh---------------h
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEMF--VGV---------------G 308 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s~~------~~~~--~G~---------------~ 308 (694)
+....-+.|+||||+|||+|+..++... +..+++++...- .... .+. .
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCC
Confidence 3334458899999999999999997543 335666665431 1100 000 0
Q ss_pred ----hHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005480 309 ----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (694)
Q Consensus 309 ----~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (694)
...+..+........+.+|+||-|-++.+....+. +...++++.+.+++..|..+....++.|+.+
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 01111222222345678999999999865422111 1223455667777776665544556666644
No 374
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.82 E-value=0.0068 Score=63.05 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=29.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~ 302 (694)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777776655533
No 375
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.81 E-value=0.01 Score=57.29 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHhcC----CCeeeeeh
Q 005480 265 KGVLLVGPPGTGKTL-LAKAIAGEAG----VPFFSISG 297 (694)
Q Consensus 265 rgVLL~GPpGTGKT~-LArAlA~e~~----~pfi~vs~ 297 (694)
+.+++.||+|+|||. ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 479999999999999 5555544432 34555544
No 376
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.81 E-value=0.001 Score=65.36 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
|+++||||+|||++|+.+|...+++. ++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998644 55555554
No 377
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.79 E-value=0.0047 Score=59.36 Aligned_cols=36 Identities=28% Similarity=0.627 Sum_probs=30.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~ 302 (694)
++++|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7899999999999999999987 66777777665543
No 378
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.78 E-value=0.0066 Score=57.94 Aligned_cols=100 Identities=26% Similarity=0.311 Sum_probs=55.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeeehh---hHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEccccccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS---EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s---~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~ 338 (694)
...+.|.||+|+|||+|++++++.... --+.++.. .+...+ ..+ .+.+-.+..|....|.++++||-..=
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G-~~~rv~laral~~~p~illlDEP~~~--- 100 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGG-EKMRLALAKLLLENPNLLLLDEPTNH--- 100 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHH-HHHHHHHHHHHhcCCCEEEEeCCccC---
Confidence 345889999999999999999986521 00111110 000001 111 22333455666678999999996542
Q ss_pred cCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
-+......+.+++.++. ..++.+|+.++.+
T Consensus 101 -------LD~~~~~~l~~~l~~~~-------~til~~th~~~~~ 130 (144)
T cd03221 101 -------LDLESIEALEEALKEYP-------GTVILVSHDRYFL 130 (144)
T ss_pred -------CCHHHHHHHHHHHHHcC-------CEEEEEECCHHHH
Confidence 13334444555555441 2466677765543
No 379
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.77 E-value=0.0016 Score=70.63 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeee-hhhHH---H---HHhhhhhHHHHHHHHHHHhcCCeEEEEccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFV---E---MFVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs-~s~~~---~---~~~G~~~~~vr~lF~~A~~~aP~ILfIDEI 332 (694)
++++++|++|+|||+++++++... ...++.+. ..++. . .+.....-...++++.+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 479999999999999999998763 12222221 11111 0 001111224678889999999999999998
Q ss_pred c
Q 005480 333 D 333 (694)
Q Consensus 333 D 333 (694)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 380
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.76 E-value=0.0043 Score=71.02 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHhhh----------------------------hhH
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----------------------------GAS 310 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~G~----------------------------~~~ 310 (694)
.....+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+... ...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 333459999999999999999997754 6688888765544322110 023
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccc
Q 005480 311 RVRDLFKKAKENAPCIVFVDEIDAVG 336 (694)
Q Consensus 311 ~vr~lF~~A~~~aP~ILfIDEID~l~ 336 (694)
.+..+.+......|.+|+||-+..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 44555666667789999999999874
No 381
>PRK14531 adenylate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=64.96 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
+-|+++||||+|||++++.+|...|++.+. +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999877654 44444
No 382
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.74 E-value=0.0017 Score=70.33 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=46.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeee-hhhHHH------HHhhhhhHHHHHHHHHHHhcCCeEEEEccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFVE------MFVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs-~s~~~~------~~~G~~~~~vr~lF~~A~~~aP~ILfIDEI 332 (694)
+++|++|++|+|||+++++++... +..++.+. ..++.- .+.....-...++++.+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 479999999999999999998865 22333322 112110 001111223677888888999999999998
Q ss_pred c
Q 005480 333 D 333 (694)
Q Consensus 333 D 333 (694)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 383
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.74 E-value=0.0041 Score=67.30 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCeeeeehhhH------HHHH--hhhh---------------
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSEF------VEMF--VGVG--------------- 308 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~---------~pfi~vs~s~~------~~~~--~G~~--------------- 308 (694)
.....-+.++||||+|||+|+..+|..+. ..+++++..+- .... .+..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCC
Confidence 33444588999999999999999876321 25677766541 1100 0000
Q ss_pred hH----HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 309 AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 309 ~~----~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
.. .+..+........+.+|+||-|-++.+....+. +....++..+.+++..|..+....++.|+.+.
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 112222222345688999999999864322111 11123445566777776665555566666543
No 384
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.74 E-value=0.0055 Score=58.60 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=28.7
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHh
Q 005480 269 LVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (694)
Q Consensus 269 L~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~ 305 (694)
|.||||+|||++|+.||.+.+. ..++..++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 5667777765543
No 385
>PRK06217 hypothetical protein; Validated
Probab=96.73 E-value=0.0013 Score=65.11 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
.|+|.|+||+|||++|++|+..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999877654
No 386
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.73 E-value=0.0059 Score=63.12 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---------------CCCeeeeehhh
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA---------------GVPFFSISGSE 299 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~---------------~~pfi~vs~s~ 299 (694)
-+|+||||+|||+|+-.+|-.. +.+++++++.+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 5899999999999999997532 34677777553
No 387
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.71 E-value=0.0027 Score=69.19 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=46.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCeeeee-hhhHHH--------HH-----hhhhhHHHHHHHHHHHhcCCeEE
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSIS-GSEFVE--------MF-----VGVGASRVRDLFKKAKENAPCIV 327 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~--~pfi~vs-~s~~~~--------~~-----~G~~~~~vr~lF~~A~~~aP~IL 327 (694)
.++++++|++|+|||++++++..... ..++.+. ..++.- .+ .+...-...++++.+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 45899999999999999999988663 2222221 111110 00 11122245788899999999999
Q ss_pred EEcccc
Q 005480 328 FVDEID 333 (694)
Q Consensus 328 fIDEID 333 (694)
++.|+.
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999984
No 388
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0012 Score=63.19 Aligned_cols=34 Identities=41% Similarity=0.827 Sum_probs=29.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
+||++|-||||||+++..+|...+.+++.+ ++++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 699999999999999999999999887765 4444
No 389
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.70 E-value=0.0057 Score=61.59 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~ 286 (694)
-++|+||.|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 599999999999999999983
No 390
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.70 E-value=0.0037 Score=65.92 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=57.3
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeee-hhhHHH
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFVE 302 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~---~pfi~vs-~s~~~~ 302 (694)
..+++++.-.++..+.+++++. .+. ..+++.||+|+|||++++++..... ..++.+. ..++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~---~~~----------GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE---KPH----------GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---cCC----------CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3467777655555555544442 111 1489999999999999999977653 2344432 111110
Q ss_pred ------HHhhhhhHHHHHHHHHHHhcCCeEEEEccccc
Q 005480 303 ------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (694)
Q Consensus 303 ------~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 334 (694)
...........++.+.+.+..|.+|+|+|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 00011112356677778888999999999854
No 391
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0082 Score=62.70 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 311 ~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
.-|-++..|....|.++++||=-. +-+...+..+..+|.++.. . +..|+..|.....
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~ 201 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHH
Confidence 345567777778899999999422 2344566777788877763 2 5667777776543
No 392
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.69 E-value=0.0047 Score=61.09 Aligned_cols=72 Identities=28% Similarity=0.385 Sum_probs=41.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc-------------CCCeeeeehhhHH----HHH---------------hh--------
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSEFV----EMF---------------VG-------- 306 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~-------------~~pfi~vs~s~~~----~~~---------------~G-------- 306 (694)
++|+||||+|||+++..++... +.+++++++..-. ..+ ..
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 8999999999999999986644 2466777543221 111 00
Q ss_pred ---------hhhHHHHHHHHHHHh-cCCeEEEEccccccccc
Q 005480 307 ---------VGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQ 338 (694)
Q Consensus 307 ---------~~~~~vr~lF~~A~~-~aP~ILfIDEID~l~~~ 338 (694)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223455555666 57899999999999643
No 393
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.68 E-value=0.0054 Score=67.08 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---------CCCeeeeehhh------HHHHH--hhh---------------hhH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGV---------------GAS 310 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~---------~~pfi~vs~s~------~~~~~--~G~---------------~~~ 310 (694)
...-+.++|+||+|||.|+..+|-.+ +.++++++..+ +.+.. .+. ...
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHH
Confidence 33448899999999999999887432 23677887655 11110 000 001
Q ss_pred H----HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 311 R----VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 311 ~----vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
. +..+........+.+|+||-|-++.+....+. +....+++.+.+++..|..+....++.|+.+.
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 1 11121223445789999999999865322111 11234555677777777666555666666653
No 394
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.007 Score=61.01 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~ 288 (694)
++|+|+||+|||++|+-+|.++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 8899999999999999999987
No 395
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.66 E-value=0.0015 Score=62.14 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
++|+|+||+|||++|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 396
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.012 Score=65.10 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH----HH---H-
Q 005480 237 DEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EM---F- 304 (694)
Q Consensus 237 ~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~----~~---~- 304 (694)
++.++.+.+.+.. +..+..+ ...|+-++|.||+|+|||+++..||..+ +..+..+++..+. +. |
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4555555554433 3322111 2235679999999999999999998765 4455555554331 11 1
Q ss_pred --------hhhhhHHHHHHHHHHHh-cCCeEEEEccccc
Q 005480 305 --------VGVGASRVRDLFKKAKE-NAPCIVFVDEIDA 334 (694)
Q Consensus 305 --------~G~~~~~vr~lF~~A~~-~aP~ILfIDEID~ 334 (694)
.......+.+.++.++. ....+||||-...
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 11233445555555543 2346888886544
No 397
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.65 E-value=0.0016 Score=64.50 Aligned_cols=34 Identities=38% Similarity=0.784 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~ 302 (694)
|+|+||||+|||++|+.||...+++++. ..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999998876654 455543
No 398
>PRK13764 ATPase; Provisional
Probab=96.65 E-value=0.0026 Score=74.06 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=41.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCeeeee-hhhHH-----HHHhhhhhHHHHHHHHHHHhcCCeEEEEccccc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFV-----EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~---~pfi~vs-~s~~~-----~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~ 334 (694)
.+++|++||||+||||++++++..+. ..+.++. ..++. ..+... ........+.+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 35899999999999999999988763 2232321 11221 111000 01122333334567899999999743
No 399
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.64 E-value=0.0083 Score=59.11 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=46.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH-----HH---H---------hhhhhHHHHHHHHHHHhcCCeEEEE
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-----EM---F---------VGVGASRVRDLFKKAKENAPCIVFV 329 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~-----~~---~---------~G~~~~~vr~lF~~A~~~aP~ILfI 329 (694)
+|+.|++|+|||++|..++...+.+++++....-. .. + ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877788877644221 11 1 0111223334333222 4678999
Q ss_pred cccccccccc
Q 005480 330 DEIDAVGRQR 339 (694)
Q Consensus 330 DEID~l~~~r 339 (694)
|-+..+..+-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998876543
No 400
>PRK13695 putative NTPase; Provisional
Probab=96.64 E-value=0.022 Score=55.89 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~ 288 (694)
-++|.|++|+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 401
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.64 E-value=0.012 Score=67.32 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=30.7
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCeeeeehhh
Q 005480 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSE 299 (694)
Q Consensus 260 g~~~prgVLL~GPpGTGKT~LArAlA~e----~~~pfi~vs~s~ 299 (694)
|....+.+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3445567999999999999999988443 267888887653
No 402
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0075 Score=58.01 Aligned_cols=104 Identities=29% Similarity=0.406 Sum_probs=58.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC--eeeeehhhHH-------HH---H---hhhhhHHHHHHHHHHHhcCCeEEEE
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEFV-------EM---F---VGVGASRVRDLFKKAKENAPCIVFV 329 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~p--fi~vs~s~~~-------~~---~---~G~~~~~vr~lF~~A~~~aP~ILfI 329 (694)
.-+.|.||+|+|||+|.+++++..... -++++..... .. | ...+ .+.+-.+..+-...|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 358999999999999999999865311 1222221110 00 0 1112 23333455555667899999
Q ss_pred ccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
||...=. +......+..++.++-. . +..++.+|+..+.+.
T Consensus 105 DEp~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 9976532 23334455555554431 2 235666777655544
No 403
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.63 E-value=0.028 Score=58.49 Aligned_cols=133 Identities=16% Similarity=0.237 Sum_probs=73.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--CeeeeehhhHHH---HH-----hhh---------h----hHHHHHHHHHH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVE---MF-----VGV---------G----ASRVRDLFKKA 319 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s~~~~---~~-----~G~---------~----~~~vr~lF~~A 319 (694)
.|-.+++.|++|||||+++..+...... ..+.+-+..... .| +.. . ...+.......
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446999999999999999999765532 112221111111 00 000 0 01111122211
Q ss_pred Hh---cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceee
Q 005480 320 KE---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 396 (694)
Q Consensus 320 ~~---~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I 396 (694)
.. ..+++|++|++.. .....+.+.+++..- ..-++-+|..+.....+++.++. -.+..+
T Consensus 92 ~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~g----RH~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNG----RHYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhcc----cccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 3368999999632 112334566666532 23457778788888889999865 566666
Q ss_pred eccCCCHHHHHHHHHHhh
Q 005480 397 TVDVPDIRGRTEILKVHG 414 (694)
Q Consensus 397 ~i~~Pd~~eR~~Il~~~l 414 (694)
-+. -+......|++.+.
T Consensus 154 ~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNMN 170 (241)
T ss_pred Eec-CcHHHHHHHHHhcc
Confidence 554 45666666666553
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.63 E-value=0.023 Score=61.57 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s 298 (694)
..|.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 346678999999999999999998865 4455555554
No 405
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.63 E-value=0.002 Score=66.53 Aligned_cols=33 Identities=24% Similarity=0.527 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.|.-++|.||||+|||++|+.+|...+++++.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 345599999999999999999999999877754
No 406
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.62 E-value=0.0065 Score=65.53 Aligned_cols=34 Identities=32% Similarity=0.652 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.++..|+|+|+||+|||++++.+|..+|.||+.+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 4456799999999999999999999999999943
No 407
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.61 E-value=0.011 Score=59.01 Aligned_cols=34 Identities=47% Similarity=0.805 Sum_probs=27.2
Q ss_pred hhhhhcCCCCce--EEEEcCCCChHHHHHHHHHHhc
Q 005480 255 RFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 255 ~~~~lg~~~prg--VLL~GPpGTGKT~LArAlA~e~ 288 (694)
..+.+...+++| ++|.||+|.|||+|.|.+..+.
T Consensus 17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 445555666666 8999999999999999997754
No 408
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.60 E-value=0.0035 Score=67.55 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=46.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeee-hhhHHH---H----H-----hhhhhHHHHHHHHHHHhcCCe
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE---M----F-----VGVGASRVRDLFKKAKENAPC 325 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs-~s~~~~---~----~-----~G~~~~~vr~lF~~A~~~aP~ 325 (694)
.+....+++.||+|+|||++++++++...- .++.+. ..++.- . . .+...-...+++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 344558999999999999999999886621 122221 111100 0 0 011122356778888889999
Q ss_pred EEEEcccc
Q 005480 326 IVFVDEID 333 (694)
Q Consensus 326 ILfIDEID 333 (694)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999984
No 409
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.028 Score=58.31 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=92.8
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHhcCC--------C-eeeeehhhHHHH-HhhhhhHHHHHHHHHHH----hcCCeEEE
Q 005480 264 PKGVLLVGPPG-TGKTLLAKAIAGEAGV--------P-FFSISGSEFVEM-FVGVGASRVRDLFKKAK----ENAPCIVF 328 (694)
Q Consensus 264 prgVLL~GPpG-TGKT~LArAlA~e~~~--------p-fi~vs~s~~~~~-~~G~~~~~vr~lF~~A~----~~aP~ILf 328 (694)
....|+.|..+ ++|..++..++....+ | ++.+....-... -..-+...+|++-+.+. ....-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 44799999998 9999998888776522 1 222221100000 00113455666655553 23456999
Q ss_pred EccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCCCccceeeeccCCCHHHHHH
Q 005480 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (694)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~ 408 (694)
||++|.+ .....|.||+.++. +..++++|..|+.++.+.|.+++ |. ..+.++.|+...-.+
T Consensus 95 I~~ae~m--------------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM--------------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNE 155 (263)
T ss_pred EechHHh--------------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHH
Confidence 9999999 34578899999885 56678888888889999999998 65 467899998887777
Q ss_pred HHHHhhcCCC
Q 005480 409 ILKVHGSNKK 418 (694)
Q Consensus 409 Il~~~l~~~~ 418 (694)
.....+....
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 7777665443
No 410
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.58 E-value=0.01 Score=58.86 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=55.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CeeeeehhhH---HHH-HhhhhhHHHHHHHHHHHhcCCeEEEEcccccccccc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF---VEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s~~---~~~-~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r 339 (694)
-+.|.||.|+|||+|.+.+++.... --+.+++..+ ... ....+ .+.+-.+..+....|.++++||--.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEPts~---- 101 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEPSAY---- 101 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECCccc----
Confidence 5889999999999999999986411 0111111100 000 01111 23344556666678999999996442
Q ss_pred CCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
-+....+.+..++.++. ...+..+|.+|+..+.
T Consensus 102 ------LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 134 (177)
T cd03222 102 ------LDIEQRLNAARAIRRLS---EEGKKTALVVEHDLAV 134 (177)
T ss_pred ------CCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHH
Confidence 23333444444554432 1222345566666543
No 411
>PRK13808 adenylate kinase; Provisional
Probab=96.57 E-value=0.011 Score=64.20 Aligned_cols=33 Identities=30% Similarity=0.655 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
|+|+||||+|||++++.||...+++.+ +..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 899999999999999999999987555 445554
No 412
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.57 E-value=0.028 Score=64.04 Aligned_cols=153 Identities=25% Similarity=0.295 Sum_probs=81.8
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhc--CCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeee-ehhhHHH------
Q 005480 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIG--ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVE------ 302 (694)
Q Consensus 232 dv~G~~e~k~~L~e~v~~l~~p~~~~~lg--~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v-s~s~~~~------ 302 (694)
.|.|.+.+|+.+.=++-- .-++--.-| ++-.-+|||.|.|.|-||-|.|++-+.+...+-.. .+|.-+.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 467888888877654422 111111112 22234799999999999999999987653322211 0111000
Q ss_pred HHhhhhhHHHHH-HHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhh------cCc--cCCCCeEEE
Q 005480 303 MFVGVGASRVRD-LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVI 373 (694)
Q Consensus 303 ~~~G~~~~~vr~-lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~l------d~~--~~~~~ViVI 373 (694)
.-...+++++.. ..-.| ...|++|||+|.+. +-....+.+..++- -|+ .-|.+.-|+
T Consensus 380 tD~eTGERRLEAGAMVLA---DRGVVCIDEFDKMs-----------DiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLA---DRGVVCIDEFDKMS-----------DIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred eccccchhhhhcCceEEc---cCceEEehhccccc-----------chhHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 001112233210 00111 23599999999982 22223344433321 011 224567899
Q ss_pred EecCCcc-------------ccchhhcCCCccceee-eccCCC
Q 005480 374 AATNRAD-------------ILDSALLRPGRFDRQV-TVDVPD 402 (694)
Q Consensus 374 aaTN~p~-------------~LD~aLlRpgRfdr~I-~i~~Pd 402 (694)
||.|... .|+..|++ |||..+ .++--|
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~lD~~d 486 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVVLDDID 486 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHh--hhcEEEEEecccc
Confidence 9999633 46788999 999844 334333
No 413
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.57 E-value=0.007 Score=59.34 Aligned_cols=102 Identities=27% Similarity=0.410 Sum_probs=57.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--Ceeeeehh--------hHHHH----------Hh-------hhhhHHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS--------EFVEM----------FV-------GVGASRVRDLFKK 318 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s--------~~~~~----------~~-------G~~~~~vr~lF~~ 318 (694)
-+.|.||+|+|||+|.+.+++.... --+.+++. .+... +. -.+-.+.+-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 4889999999999999999986410 00111111 11000 00 0112234445666
Q ss_pred HHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 319 A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
|....|.++++||--.- -+....+.+.+++..+.. .+..+|.+|+..+.
T Consensus 110 al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 158 (173)
T cd03246 110 ALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPET 158 (173)
T ss_pred HHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 66788999999996442 233445555566655431 23456666776543
No 414
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0095 Score=58.31 Aligned_cols=103 Identities=25% Similarity=0.349 Sum_probs=57.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CeeeeehhhH--------HH----------HH--------hhhhhHHHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VE----------MF--------VGVGASRVRDL 315 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s~~--------~~----------~~--------~G~~~~~vr~l 315 (694)
..-+.|.||+|+|||+|.+.+++.... --+.+++... .. .+ ... -.+.+-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~-G~~~rl~ 106 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSG-GQRQRIA 106 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCH-HHHHHHH
Confidence 335999999999999999999986520 0011111110 00 00 111 1222334
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 316 FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 316 F~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
+..+-...|.++++||--+- -+......+.+++.++. . +..+|.+|+.++.+
T Consensus 107 la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARALLRDPPILILDEATSA----------LDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 55556678999999995442 23334455556665543 1 24566677776554
No 415
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.57 E-value=0.0017 Score=62.81 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~ 300 (694)
++|+||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986665 44443
No 416
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.56 E-value=0.003 Score=64.05 Aligned_cols=129 Identities=24% Similarity=0.383 Sum_probs=60.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHH-hhhhhHHHHHHHHHHHhcCCeEEEEccccccccccCCCCC
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF-VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~-~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~ 344 (694)
-++|+||+|||||.+|-++|++.|.|++..+.-...... +|.+.....+ + +..+ =+++||-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e-l----~~~~-RiyL~~r~l~--------- 67 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE-L----KGTR-RIYLDDRPLS--------- 67 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG-G----TT-E-EEES----GG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH-H----cccc-eeeecccccc---------
Confidence 378999999999999999999999999998765544332 3322111111 1 1112 2777864332
Q ss_pred CCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcC---CCccce-eeeccCCCHHHHHHHHH
Q 005480 345 GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR---PGRFDR-QVTVDVPDIRGRTEILK 411 (694)
Q Consensus 345 ~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlR---pgRfdr-~I~i~~Pd~~eR~~Il~ 411 (694)
.|.-...+....|+..++......++|+=+-+.. .|..-..+ ...|.. +..+++||.+.-..=.+
T Consensus 68 ~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~ 136 (233)
T PF01745_consen 68 DGIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAK 136 (233)
T ss_dssp G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHH
Confidence 1233345566777778887777555555554422 12111111 113333 45667888775444333
No 417
>PRK14529 adenylate kinase; Provisional
Probab=96.56 E-value=0.006 Score=62.78 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
.|+|.||||+|||++++.||...+.+.+ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 3899999999999999999999997765 334444
No 418
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.55 E-value=0.014 Score=57.01 Aligned_cols=99 Identities=32% Similarity=0.484 Sum_probs=56.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-----------Ceeeeehh------hHHHHHh------hhhhHHHHHHHHHHHh
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGV-----------PFFSISGS------EFVEMFV------GVGASRVRDLFKKAKE 321 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~-----------pfi~vs~s------~~~~~~~------G~~~~~vr~lF~~A~~ 321 (694)
.-+.|.||+|+|||+|++.+++.... .+.++... ...+... -.+-.+.+-.+..|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999986410 01111110 0111110 0112234445666667
Q ss_pred cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005480 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (694)
Q Consensus 322 ~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (694)
..|.++++||-.+- -+....+.+.+++.++ +..+|.+|+.++
T Consensus 108 ~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSA----------LDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECCccc----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 88999999996543 2334455555666543 134566677653
No 419
>PRK06696 uridine kinase; Validated
Probab=96.55 E-value=0.0041 Score=63.67 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=33.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~ 301 (694)
|.-|.+.|++|+|||++|+.|+..+ |.+++.++..+|.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 5569999999999999999999988 7788888877775
No 420
>PRK06547 hypothetical protein; Provisional
Probab=96.55 E-value=0.0025 Score=62.91 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.+.-|++.|++|+|||++|+.+++..+++++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 355789999999999999999999998887754
No 421
>PTZ00202 tuzin; Provisional
Probab=96.54 E-value=0.067 Score=59.99 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=51.0
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 005480 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (694)
Q Consensus 227 ~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~ 299 (694)
+....+++|.+....+|.+++.... ...|+-+.|+||+|||||++++.+....+.+.++++...
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 3456799999999999988886422 223556889999999999999999999998877776653
No 422
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.53 E-value=0.0052 Score=62.52 Aligned_cols=29 Identities=48% Similarity=0.838 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
|+++||||+|||++|+.+|...+++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999776654
No 423
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.52 E-value=0.0096 Score=57.87 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~ 286 (694)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999843
No 424
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.52 E-value=0.0072 Score=64.38 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=30.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
++-+++.|+||||||++|+.++.+.. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45689999999999999999999983 3455566666544
No 425
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.52 E-value=0.0025 Score=62.13 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeee
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs 296 (694)
+.++|+|++|+|||++++.+|..++.||+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988543
No 426
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.51 E-value=0.0026 Score=62.69 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=30.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeeh
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~ 297 (694)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999887654
No 427
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.51 E-value=0.014 Score=58.76 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIA 285 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA 285 (694)
-++|+||.|+|||+|.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 428
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.50 E-value=0.014 Score=57.09 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~ 299 (694)
++++||||+|||++++.+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998765 66777777653
No 429
>PHA02624 large T antigen; Provisional
Probab=96.49 E-value=0.0043 Score=71.60 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=66.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhHHHHHHHHHHHhcCCeEEEEcccccccc-ccC
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR-QRG 340 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEID~l~~-~r~ 340 (694)
+..+.++|+||||||||+++.+|++.++...+.++++.-...| .+.-+... -+.+||++-.-.- +..
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F----------wL~pl~D~--~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF----------ELGCAIDQ--FMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH----------Hhhhhhhc--eEEEeeecccccccccc
Confidence 3334899999999999999999999997667778755432221 11111111 3677787753322 110
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCc-cC------CCC-----eEEEEecCCccccchhhcCCCccceeeeccC
Q 005480 341 TGIGGGNDEREQTLNQLLTEMDGF-EG------NTG-----IIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (694)
Q Consensus 341 ~~~~~~~~e~~~~l~~LL~~ld~~-~~------~~~-----ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~ 400 (694)
-..|.+-+ -+..|-..+||. .- ... --.|.|||. ..|+..+.- ||-.++.|..
T Consensus 497 Lp~G~~~d----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 497 LPSGQGMN----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred CCcccccc----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 00111111 123444556654 10 011 135567774 456777766 8888777753
No 430
>PRK14530 adenylate kinase; Provisional
Probab=96.48 E-value=0.0025 Score=64.88 Aligned_cols=30 Identities=37% Similarity=0.627 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.|+|.||||+|||++++.||...+.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 499999999999999999999998776644
No 431
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.48 E-value=0.017 Score=56.82 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=58.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CeeeeehhhH-------HHH--H----------------hh--hhhHHHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF-------VEM--F----------------VG--VGASRVRD 314 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs~s~~-------~~~--~----------------~G--~~~~~vr~ 314 (694)
..-+.|.||+|+|||+|++.+++.... --+.+++.+. ... | .. .+-.+.+-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 345899999999999999999986420 0111221110 000 0 00 01123344
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 315 lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
.+..|....|.++++||-.+- -+....+.+.+++.++. + +..+|.+|+.++.+
T Consensus 108 ~laral~~~p~~lllDEP~~~----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVG----------LDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 456666678999999996543 23344556666666553 2 23555566765543
No 432
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.48 E-value=0.0027 Score=69.49 Aligned_cols=73 Identities=25% Similarity=0.425 Sum_probs=47.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeee-hhhHHH-------H-H----hhhhhHHHHHHHHHHHhcCCe
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE-------M-F----VGVGASRVRDLFKKAKENAPC 325 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs-~s~~~~-------~-~----~G~~~~~vr~lF~~A~~~aP~ 325 (694)
.+..+++|++||+|+|||+++++++..... .++.+. ..++.- . + .+...-...++++.+.+..|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 344558999999999999999999987632 222221 111110 0 0 111223456788888899999
Q ss_pred EEEEcccc
Q 005480 326 IVFVDEID 333 (694)
Q Consensus 326 ILfIDEID 333 (694)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999973
No 433
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.48 E-value=0.014 Score=61.75 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=60.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhhhH
Q 005480 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS 310 (694)
Q Consensus 231 ~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~~~ 310 (694)
-+++=.+++.+-+..+..-+..|. .+.||.|.+|+||++++|..|.-++..++.+..+.-.+ ..+...
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp ------HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 356666788888888888887764 26999999999999999999999999998887543111 122234
Q ss_pred HHHHHHHHHH-hcCCeEEEEcccc
Q 005480 311 RVRDLFKKAK-ENAPCIVFVDEID 333 (694)
Q Consensus 311 ~vr~lF~~A~-~~aP~ILfIDEID 333 (694)
.++.++..|- ++.|.+++|+|-+
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHHhccCCCeEEEecCcc
Confidence 5666666553 5678888887743
No 434
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.48 E-value=0.068 Score=60.24 Aligned_cols=74 Identities=27% Similarity=0.356 Sum_probs=47.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh----cCCCeeeeehhhHHHH-------H---hh---------hh-hHHHHHHHH
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEM-------F---VG---------VG-ASRVRDLFK 317 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e----~~~pfi~vs~s~~~~~-------~---~G---------~~-~~~vr~lF~ 317 (694)
..|.-++++|++|+|||+++..+|.. .+..+..++|..+... + .+ .. .....+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 34778999999999999998888765 3567777777644211 1 00 01 122345566
Q ss_pred HHHhcCCeEEEEcccccc
Q 005480 318 KAKENAPCIVFVDEIDAV 335 (694)
Q Consensus 318 ~A~~~aP~ILfIDEID~l 335 (694)
.++.....+|+||=...+
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 666666678888765443
No 435
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.47 E-value=0.0081 Score=63.96 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCeeeeehhhH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEF 300 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~----~-~pfi~vs~s~~ 300 (694)
.++.++|+||+|+|||+++..+|..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45679999999999999999998754 3 56666766553
No 436
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.46 E-value=0.0031 Score=63.99 Aligned_cols=23 Identities=57% Similarity=0.661 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~ 288 (694)
-+.+.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998754
No 437
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.45 E-value=0.0064 Score=68.64 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=62.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCce-EEEEcCCCChHHHHHHHHHHhcCCCeee-eehhhHHH
Q 005480 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFFS-ISGSEFVE 302 (694)
Q Consensus 225 ~~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prg-VLL~GPpGTGKT~LArAlA~e~~~pfi~-vs~s~~~~ 302 (694)
....+|+++.......+.+.+++. .|.| +|++||.|+|||+...++.++++-+... ++..+=++
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 346778888888877777766553 2446 6788999999999999998888655442 22222221
Q ss_pred HH-hhh--------hhHHHHHHHHHHHhcCCeEEEEcccccc
Q 005480 303 MF-VGV--------GASRVRDLFKKAKENAPCIVFVDEIDAV 335 (694)
Q Consensus 303 ~~-~G~--------~~~~vr~lF~~A~~~aP~ILfIDEID~l 335 (694)
.. .|. ..-.....++...++.|+||.+.||-..
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 10 000 0011233455556788999999999554
No 438
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.45 E-value=0.008 Score=65.34 Aligned_cols=70 Identities=27% Similarity=0.280 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhhh--------hHHHHH---HHHHHHhcCCeEEEEcccc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG--------ASRVRD---LFKKAKENAPCIVFVDEID 333 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~~--------~~~vr~---lF~~A~~~aP~ILfIDEID 333 (694)
+.+.|.|+||+|||+|++.++...+.+++.-.+.++.....+.. ...+.. ....+...++.|||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 36999999999999999999999999988766666654332100 011111 12334445678999995 4
Q ss_pred cc
Q 005480 334 AV 335 (694)
Q Consensus 334 ~l 335 (694)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 44
No 439
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.44 E-value=0.0054 Score=67.77 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=45.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC-----CCeeeeeh-hhHH-----------HHHhhhhhHHHHHHHHHHHhcCCeEEE
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISG-SEFV-----------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~-----~pfi~vs~-s~~~-----------~~~~G~~~~~vr~lF~~A~~~aP~ILf 328 (694)
.+|++||+|+|||++++++..... ..++.+.- .++. ..-+|.......+.++.+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999987652 33444421 1211 011122222355667778888999999
Q ss_pred Eccccc
Q 005480 329 VDEIDA 334 (694)
Q Consensus 329 IDEID~ 334 (694)
++|+..
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999844
No 440
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0037 Score=68.24 Aligned_cols=28 Identities=57% Similarity=0.875 Sum_probs=23.3
Q ss_pred hcCCCCce--EEEEcCCCChHHHHHHHHHH
Q 005480 259 IGARIPKG--VLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 259 lg~~~prg--VLL~GPpGTGKT~LArAlA~ 286 (694)
+...+.+| +-|.||+||||||+.|.||+
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34455556 67999999999999999998
No 441
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.023 Score=55.74 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=57.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC----------CCe-----------eeeehh-hHH------HHHhhhhhHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAG----------VPF-----------FSISGS-EFV------EMFVGVGASRVRDLFK 317 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~----------~pf-----------i~vs~s-~~~------~~~~G~~~~~vr~lF~ 317 (694)
-+.|.||+|+|||+|.+.+++... .+. .++... .+. +...-.+-.+.+-.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 489999999999999999998541 010 011000 000 0000011223344566
Q ss_pred HHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005480 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (694)
Q Consensus 318 ~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (694)
.|....|.++++||-.+- -+......+.+++..+.. + +..+|.+|+.++.
T Consensus 108 ral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~~ 157 (173)
T cd03230 108 QALLHDPELLILDEPTSG----------LDPESRREFWELLRELKK---E-GKTILLSSHILEE 157 (173)
T ss_pred HHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHHH
Confidence 666788999999996553 233444555566655431 2 3456666776543
No 442
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.41 E-value=0.0052 Score=64.53 Aligned_cols=109 Identities=25% Similarity=0.277 Sum_probs=63.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC---------CCeeeeehhh-HH--------HHHhhh--------------h----hH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSE-FV--------EMFVGV--------------G----AS 310 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~---------~pfi~vs~s~-~~--------~~~~G~--------------~----~~ 310 (694)
.=|+||||+|||.|+-.+|-.+- ..+++++... |. +.+-.. . ..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 44999999999999998876543 3477776532 11 111000 0 01
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005480 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 311 ~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (694)
.+..+-.......-.+|+||-|-++.+....+ .+...++.+.+..++..|..+....++.||.|.
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTN 185 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTN 185 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeec
Confidence 11122222234556899999999997643221 122345677888887777766666677666543
No 443
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.41 E-value=0.063 Score=56.98 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s 298 (694)
..|+-++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 446778899999999999999988755 5556556554
No 444
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.40 E-value=0.0072 Score=63.36 Aligned_cols=31 Identities=42% Similarity=0.728 Sum_probs=24.5
Q ss_pred hhcCCCCce--EEEEcCCCChHHHHHHHHHHhc
Q 005480 258 AIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 258 ~lg~~~prg--VLL~GPpGTGKT~LArAlA~e~ 288 (694)
.+....|+| +.|.||.|||||||.|++++-+
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 344455554 8899999999999999999833
No 445
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.40 E-value=0.023 Score=56.30 Aligned_cols=38 Identities=32% Similarity=0.607 Sum_probs=34.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~ 303 (694)
-|+|.|+|-+|||++|++|...+..||+.++...|.++
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 48999999999999999999999999999999999874
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.39 E-value=0.019 Score=59.01 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~ 286 (694)
-+.+.||+|||||||...++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999976
No 447
>PHA02774 E1; Provisional
Probab=96.39 E-value=0.013 Score=67.55 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCeee-eeh
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-ISG 297 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~pfi~-vs~ 297 (694)
++++|+||||||||++|-+|++.++..++. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 479999999999999999999998655543 553
No 448
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.39 E-value=0.008 Score=71.61 Aligned_cols=68 Identities=28% Similarity=0.343 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcCC
Q 005480 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (694)
Q Consensus 310 ~~vr~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRp 389 (694)
.+-|-.+..|--..|.||++||.-+- -+.+.++.+.+-|.++.. +..+|..|+++.. ++
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSa----------LD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t-----i~- 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSA----------LDPETEAIILQNLLQILQ-----GRTVIIIAHRLST-----IR- 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccc----------cCHhHHHHHHHHHHHHhc-----CCeEEEEEccchH-----hh-
Confidence 34455566666788999999997543 245566666666665542 2345556777544 33
Q ss_pred Cccceeeecc
Q 005480 390 GRFDRQVTVD 399 (694)
Q Consensus 390 gRfdr~I~i~ 399 (694)
+.|+.+.++
T Consensus 673 -~adrIiVl~ 681 (709)
T COG2274 673 -SADRIIVLD 681 (709)
T ss_pred -hccEEEEcc
Confidence 566666554
No 449
>PRK14528 adenylate kinase; Provisional
Probab=96.37 E-value=0.0032 Score=62.76 Aligned_cols=30 Identities=33% Similarity=0.692 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.+++.||||+|||++++.+|...+++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999877653
No 450
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.37 E-value=0.016 Score=59.82 Aligned_cols=34 Identities=26% Similarity=0.584 Sum_probs=26.7
Q ss_pred hhhhhhcCCCCce--EEEEcCCCChHHHHHHHHHHh
Q 005480 254 ERFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGE 287 (694)
Q Consensus 254 ~~~~~lg~~~prg--VLL~GPpGTGKT~LArAlA~e 287 (694)
..+..+..+.++| +-+.||+|||||+|.|.+.+.
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 3444556666766 678999999999999999874
No 451
>PRK14527 adenylate kinase; Provisional
Probab=96.36 E-value=0.0034 Score=62.58 Aligned_cols=33 Identities=39% Similarity=0.600 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
.|.-++++||||+|||++|+.+|.+.+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 455699999999999999999999998765543
No 452
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.35 E-value=0.01 Score=58.15 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC---CCeeeeehhhHHH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVE 302 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~~---~pfi~vs~s~~~~ 302 (694)
.|.-++|+|+||+|||++|+.++..+. ...+.++...+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 455799999999999999999998875 3355666655543
No 453
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.35 E-value=0.011 Score=65.44 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~ 288 (694)
++|+||||+|||+|++.+++..
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhh
Confidence 9999999999999999999975
No 454
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.34 E-value=0.025 Score=65.24 Aligned_cols=41 Identities=27% Similarity=0.237 Sum_probs=30.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc----CCCeeeeehhhHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~----~~pfi~vs~s~~~ 301 (694)
.+...-+||+|+||+|||+|+..++.+. |-++++++..+-.
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 3344569999999999999999875432 6788888765443
No 455
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.34 E-value=0.14 Score=54.99 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
+.|.-+++.|++|||||++|+.+|..++.+. .+++..+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHHH
Confidence 4577899999999999999999999999884 34555444
No 456
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.003 Score=61.31 Aligned_cols=28 Identities=36% Similarity=0.681 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeee
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (694)
|-+.||||||||++|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999986
No 457
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.32 E-value=0.023 Score=57.64 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=55.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-----hcCCCee--e------------eehhh----HHHHHhhhhhHHHHHHHHHHHh
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAG-----EAGVPFF--S------------ISGSE----FVEMFVGVGASRVRDLFKKAKE 321 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~-----e~~~pfi--~------------vs~s~----~~~~~~G~~~~~vr~lF~~A~~ 321 (694)
+-++|.||.|+|||++.+.++. .+|+++- + +...+ -.+.|..+ ..++..++..+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e-~~~~~~il~~~-- 106 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE-MSETAYILDYA-- 106 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHH-HHHHHHHHHhc--
Confidence 4599999999999999999964 3343321 0 00110 01112221 22344444433
Q ss_pred cCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccch
Q 005480 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (694)
Q Consensus 322 ~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (694)
..|+++++||+..= -...+.......++..+... +..+|.+|+..+..+.
T Consensus 107 ~~~~lvllDE~~~g---------t~~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 107 DGDSLVLIDELGRG---------TSSADGFAISLAILECLIKK----ESTVFFATHFRDIAAI 156 (204)
T ss_pred CCCcEEEeccccCC---------CCHHHHHHHHHHHHHHHHhc----CCEEEEECChHHHHHH
Confidence 45789999997441 01122233334445444422 4567778987665553
No 458
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.32 E-value=0.0092 Score=64.93 Aligned_cols=84 Identities=21% Similarity=0.395 Sum_probs=56.2
Q ss_pred Ccc-ccccchHHHHHHHHHHHHhcCchhhhhhcCCC-CceEEEEcCCCChHHHHHHHHHHhc-CCCeeeeehhhHHHHHh
Q 005480 229 TFD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEMFV 305 (694)
Q Consensus 229 ~f~-dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~-prgVLL~GPpGTGKT~LArAlA~e~-~~pfi~vs~s~~~~~~~ 305 (694)
.|+ ++.|+++.++++-+.+..... |... -+-++|.||+|+|||+|++.+.+-+ ..|++.+..+-..+.-.
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~-------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL 130 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQ-------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPL 130 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHh-------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChh
Confidence 355 899999998877665543221 2222 2358899999999999999997755 34777776555554444
Q ss_pred hhhhHHHHHHHHHH
Q 005480 306 GVGASRVRDLFKKA 319 (694)
Q Consensus 306 G~~~~~vr~lF~~A 319 (694)
......+|+.|..-
T Consensus 131 ~L~P~~~r~~~~~~ 144 (358)
T PF08298_consen 131 HLFPKELRREFEDE 144 (358)
T ss_pred hhCCHhHHHHHHHH
Confidence 44566667666543
No 459
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.31 E-value=0.0035 Score=61.60 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
-+++.||||+|||++++.++...|.+. ++..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 488999999999999999999987654 4554443
No 460
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.31 E-value=0.02 Score=63.23 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~ 300 (694)
.|..+++.||.|||||++.+++...+ +..++.+..+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~ 61 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGI 61 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHH
Confidence 35679999999999999999997766 334544443333
No 461
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.29 E-value=0.0034 Score=63.58 Aligned_cols=33 Identities=42% Similarity=0.804 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
|++.||||+|||++|+.+|...+++.+. ..++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7999999999999999999999876654 44444
No 462
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.1 Score=54.35 Aligned_cols=186 Identities=17% Similarity=0.205 Sum_probs=99.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehh---hHHHHHhhh--hhHHHH---HHHHHHHhc---CC-eEEEE
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS---EFVEMFVGV--GASRVR---DLFKKAKEN---AP-CIVFV 329 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s---~~~~~~~G~--~~~~vr---~lF~~A~~~---aP-~ILfI 329 (694)
+.|.-+||=|+||+|||++|.-+|.++|++-+- +.. ++.-..++. -...-. +.++..+.. .| +.=|.
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~ 165 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE 165 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence 456779999999999999999999999987653 222 222222220 011111 122222111 11 00122
Q ss_pred ccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecC-CccccchhhcCCCccceeeeccCCCHHHHHH
Q 005480 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (694)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN-~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~ 408 (694)
|....+ ....+.++..-+.+ ..+ +||=... -|..+++..+.. -...+.+-.+|.+.-+.
T Consensus 166 dqa~~V-----------~~GI~~VI~RAi~e------G~~-lIIEGvHlVPg~i~~~~~~~--n~~~~~l~i~dee~Hr~ 225 (299)
T COG2074 166 DQASAV-----------MVGIEAVIERAIEE------GED-LIIEGVHLVPGLIKEEALGN--NVFMFMLYIADEELHRE 225 (299)
T ss_pred HHhHHH-----------HHHHHHHHHHHHhc------Ccc-eEEEeeeeccccccHhhhcc--ceEEEEEEeCCHHHHHH
Confidence 222222 01122233332221 222 3443333 477777776632 23355667777776554
Q ss_pred HHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHcCc
Q 005480 409 ILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (694)
Q Consensus 409 Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~~g~ 475 (694)
=|............ ....+.. -.+++.+-+.....|...|-..|+.+|+++++++++.-.
T Consensus 226 RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i 285 (299)
T COG2074 226 RFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDI 285 (299)
T ss_pred HHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHHH
Confidence 44333322211111 1222222 246778888888888889999999999999999887554
No 463
>PRK02496 adk adenylate kinase; Provisional
Probab=96.27 E-value=0.0034 Score=62.01 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
-+++.||||+|||++++.+|...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998766543
No 464
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.27 E-value=0.009 Score=68.39 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=58.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCce-EEEEcCCCChHHHHHHHHHHhcC---CCeeeeeh-hhH
Q 005480 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-SEF 300 (694)
Q Consensus 226 ~~~~f~dv~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prg-VLL~GPpGTGKT~LArAlA~e~~---~pfi~vs~-s~~ 300 (694)
...+++++.-.++..+.+.+++. . |+| ++++||+|+|||++.+++..+.. ..++++.- -++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34678887766666666665542 2 335 78999999999999998877663 33444321 111
Q ss_pred HHHH-----hh-hhhHHHHHHHHHHHhcCCeEEEEccccc
Q 005480 301 VEMF-----VG-VGASRVRDLFKKAKENAPCIVFVDEIDA 334 (694)
Q Consensus 301 ~~~~-----~G-~~~~~vr~lF~~A~~~aP~ILfIDEID~ 334 (694)
.-.. +. ..........+.+.+..|.+|+|.||..
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1000 00 0011234556667778999999999844
No 465
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.27 E-value=0.023 Score=56.19 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~ 288 (694)
..+.|.||+|+|||+|.+.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
No 466
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.26 E-value=0.013 Score=72.88 Aligned_cols=135 Identities=23% Similarity=0.311 Sum_probs=88.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHH--HHhhh----hh---HHHHHHHHHHHhcCCeEEEEccccccc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGV----GA---SRVRDLFKKAKENAPCIVFVDEIDAVG 336 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~--~~~G~----~~---~~vr~lF~~A~~~aP~ILfIDEID~l~ 336 (694)
++||.||..+|||+....+|.+.|..|+.++-.+..+ .|.|. .. +--..++-.|.+.. ..|++||+.-.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 5999999999999999999999999999998765432 23332 11 11123333443333 47889998654
Q ss_pred cccCCCCCCCChhHHHHHHHHHhhhcC---------ccCCCCeEEEEecCCcc------ccchhhcCCCccceeeeccCC
Q 005480 337 RQRGTGIGGGNDEREQTLNQLLTEMDG---------FEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVTVDVP 401 (694)
Q Consensus 337 ~~r~~~~~~~~~e~~~~l~~LL~~ld~---------~~~~~~ViVIaaTN~p~------~LD~aLlRpgRfdr~I~i~~P 401 (694)
....-..+|.||..-.. ..+.+++.+.||-|.|- .|..|++. ||- .++|.--
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddi 1034 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDI 1034 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccC
Confidence 22344566766653211 12345688888888764 57788877 883 5566655
Q ss_pred CHHHHHHHHHHhhc
Q 005480 402 DIRGRTEILKVHGS 415 (694)
Q Consensus 402 d~~eR~~Il~~~l~ 415 (694)
..++...||...+.
T Consensus 1035 pedEle~ILh~rc~ 1048 (4600)
T COG5271 1035 PEDELEEILHGRCE 1048 (4600)
T ss_pred cHHHHHHHHhccCc
Confidence 66777788876553
No 467
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.26 E-value=0.014 Score=58.73 Aligned_cols=67 Identities=28% Similarity=0.447 Sum_probs=43.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc-CCCeeeeehhhHHHHHhh------------------hhhHHHHHHHHHHHhc
Q 005480 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEMFVG------------------VGASRVRDLFKKAKEN 322 (694)
Q Consensus 262 ~~prgVLL~GPpGTGKT~LArAlA~e~-~~pfi~vs~s~~~~~~~G------------------~~~~~vr~lF~~A~~~ 322 (694)
..|.-+++.|+||+|||+++..+..+. +..++.++..+|...+.. ........+++.+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 557789999999999999999998888 778888888887643211 0111234556666666
Q ss_pred CCeEEE
Q 005480 323 APCIVF 328 (694)
Q Consensus 323 aP~ILf 328 (694)
...|||
T Consensus 93 ~~nii~ 98 (199)
T PF06414_consen 93 RYNIIF 98 (199)
T ss_dssp T--EEE
T ss_pred CCCEEE
Confidence 666664
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.26 E-value=0.016 Score=66.66 Aligned_cols=76 Identities=26% Similarity=0.300 Sum_probs=48.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHHh------hh----------------------hh
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV----------------------GA 309 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~~~------G~----------------------~~ 309 (694)
......++++|+||+|||+++..++.+. |-++++++..+-.+.+. |. ..
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 3444458999999999999999987644 77888776543222110 00 01
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccc
Q 005480 310 SRVRDLFKKAKENAPCIVFVDEIDAVG 336 (694)
Q Consensus 310 ~~vr~lF~~A~~~aP~ILfIDEID~l~ 336 (694)
..+..+.+......|.+|+||-+..+.
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 122233334455678899999999885
No 469
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.074 Score=58.66 Aligned_cols=49 Identities=6% Similarity=0.014 Sum_probs=32.1
Q ss_pred eeeccCCCHHHHHHHHHHhhcCCCCCccc----cHHHHHHhCCCCcHHHHHHHH
Q 005480 395 QVTVDVPDIRGRTEILKVHGSNKKFDADV----SLDVIAMRTPGFSGADLANLL 444 (694)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv----dl~~lA~~t~G~sgadL~~lv 444 (694)
.|+++.++.+|-.+++..+++..-+..++ ....+--.. +.+|+.++.+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 57888999999999999887654333222 234444444 56777666655
No 470
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.22 E-value=0.009 Score=65.51 Aligned_cols=23 Identities=48% Similarity=0.661 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~ 288 (694)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 471
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.21 E-value=0.017 Score=58.12 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhh
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G 306 (694)
-|.|+|++|+|||++++.++...|.+++ ++.++......
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~ 41 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALA 41 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHh
Confidence 3889999999999999999998888877 56666554433
No 472
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.20 E-value=0.022 Score=56.63 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHHhhh
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGV 307 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~~~~~G~ 307 (694)
|.|+|.+|+|||++++.++...+.+++ ++.++.......
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~ 40 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEK 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhc
Confidence 689999999999999999998667665 556665444433
No 473
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.19 E-value=0.012 Score=65.79 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
.+.|.|.|++|||||+|+++||...|.+.+.--+.++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 45699999999999999999999998887654444444
No 474
>PF13245 AAA_19: Part of AAA domain
Probab=96.13 E-value=0.0072 Score=51.56 Aligned_cols=32 Identities=41% Similarity=0.625 Sum_probs=22.2
Q ss_pred EEEEcCCCChHH-HHHHHHHHhc------CCCeeeeehh
Q 005480 267 VLLVGPPGTGKT-LLAKAIAGEA------GVPFFSISGS 298 (694)
Q Consensus 267 VLL~GPpGTGKT-~LArAlA~e~------~~pfi~vs~s 298 (694)
+++.|||||||| ++++.++... +..++.++.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 556999999999 6666666554 4456666543
No 475
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.13 E-value=0.0041 Score=56.77 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~ 288 (694)
|+|.|+||||||++|+.|+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 476
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.10 E-value=0.041 Score=62.00 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCeeeeehhhH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 300 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~-----~~pfi~vs~s~~ 300 (694)
++.++|.||+|+|||+++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4568999999999999888887643 356666766554
No 477
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.10 E-value=0.028 Score=59.78 Aligned_cols=94 Identities=26% Similarity=0.463 Sum_probs=58.5
Q ss_pred Cce-EEEEcCCCChHHHHHHHHHHhcC----CCeeeee-hhhHH---------HHHhhhhhHHHHHHHHHHHhcCCeEEE
Q 005480 264 PKG-VLLVGPPGTGKTLLAKAIAGEAG----VPFFSIS-GSEFV---------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (694)
Q Consensus 264 prg-VLL~GPpGTGKT~LArAlA~e~~----~pfi~vs-~s~~~---------~~~~G~~~~~vr~lF~~A~~~aP~ILf 328 (694)
|+| ||++||.|+|||+...++-...+ .+++.+. .-+|+ ..-+|.........++.|.+..|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 446 78899999999998888876653 3333331 11222 123444444455667777788899999
Q ss_pred EccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005480 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (694)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (694)
+-|+-.. .++..-|.. ...+-+|++|-+.
T Consensus 204 vGEmRD~----------------ETi~~ALtA-----AETGHLV~~TLHT 232 (353)
T COG2805 204 VGEMRDL----------------ETIRLALTA-----AETGHLVFGTLHT 232 (353)
T ss_pred EeccccH----------------HHHHHHHHH-----HhcCCEEEEeccc
Confidence 9997554 244444442 2355688887543
No 478
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.10 E-value=0.026 Score=55.64 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~ 288 (694)
.-+.|.||+|+|||+|.+.+++..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 479
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.09 E-value=0.04 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~ 288 (694)
...+.|.||+|+|||+|.+.+++..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999875
No 480
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.08 E-value=0.032 Score=57.39 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=56.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh-----cCCCe---------e-----eeehhhHHHH---HhhhhhHHHHHHHHHHHhc
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGE-----AGVPF---------F-----SISGSEFVEM---FVGVGASRVRDLFKKAKEN 322 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e-----~~~pf---------i-----~vs~s~~~~~---~~G~~~~~vr~lF~~A~~~ 322 (694)
+-++|.||.|+|||++.+.++.- .|.++ + .+...+-... ....--.++..+++.+.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~-- 109 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT-- 109 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC--
Confidence 35899999999999999999872 13221 1 1111111110 11112234555666553
Q ss_pred CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005480 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (694)
Q Consensus 323 aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (694)
.|++++|||+..= ....+.......++..+.. ..+..+|.+|+..+..+
T Consensus 110 ~~sLvllDE~~~g---------T~~~d~~~i~~~il~~l~~---~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 110 SRSLVILDELGRG---------TSTHDGIAIAYATLHYLLE---EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CCeEEEEccCCCC---------CChhhHHHHHHHHHHHHHh---ccCCeEEEEcccHHHHH
Confidence 5789999997541 0111222223344444432 23456777898876543
No 481
>PRK01184 hypothetical protein; Provisional
Probab=96.08 E-value=0.005 Score=60.77 Aligned_cols=29 Identities=41% Similarity=0.676 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 788999888654
No 482
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.05 E-value=0.012 Score=58.76 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~ 288 (694)
|+-++|+||+|+|||+|++.+..+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5679999999999999999998764
No 483
>PRK04182 cytidylate kinase; Provisional
Probab=96.04 E-value=0.0057 Score=59.57 Aligned_cols=29 Identities=38% Similarity=0.691 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeee
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (694)
-|+|.|++|+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999998765
No 484
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.024 Score=55.81 Aligned_cols=104 Identities=26% Similarity=0.391 Sum_probs=57.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC--eeeeeh---h-------hHHH----------HHhh-----------hhhHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISG---S-------EFVE----------MFVG-----------VGASRV 312 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~~~p--fi~vs~---s-------~~~~----------~~~G-----------~~~~~v 312 (694)
-+.|.||+|+|||+|++++++..... -+.+++ + .+.. .+.+ .+-.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~q 107 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQ 107 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHH
Confidence 48899999999999999998754110 011111 0 0000 0000 011233
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005480 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 313 r~lF~~A~~~aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (694)
|-.+..|....|.++++||-.+- -+......+.+++.++.. ..+..+|.+|+.++.+
T Consensus 108 r~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 164 (178)
T cd03229 108 RVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQA---QLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 44556666778999999996442 234445556666655432 2134566666665544
No 485
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.02 E-value=0.0073 Score=66.03 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--Ceeeee-hhhHH-------HH------HhhhhhHHHHHHHHHHHhcCCeEEE
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFV-------EM------FVGVGASRVRDLFKKAKENAPCIVF 328 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e~~~--pfi~vs-~s~~~-------~~------~~G~~~~~vr~lF~~A~~~aP~ILf 328 (694)
+++++.|++|+|||++.+++.....- ..+.+. ..++. .. -.|.+.-...++++.+.+..|..|+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~Ii 258 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIV 258 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEE
Confidence 47999999999999999999876521 122111 11111 00 0122233567888899999999999
Q ss_pred Ecccc
Q 005480 329 VDEID 333 (694)
Q Consensus 329 IDEID 333 (694)
+.|+-
T Consensus 259 vGEiR 263 (340)
T TIGR03819 259 VGEVR 263 (340)
T ss_pred EeCcC
Confidence 99984
No 486
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.02 E-value=0.054 Score=60.91 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH-------HH--------hh-----hhhHHHHHHHHHH
Q 005480 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF--------VG-----VGASRVRDLFKKA 319 (694)
Q Consensus 263 ~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~-------~~--------~G-----~~~~~vr~lF~~A 319 (694)
.|.-++|+|++|+||||++..+|..+ |..+..+++..+.. .+ .. ......++.++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998755 66677676654321 00 10 0112234456666
Q ss_pred HhcCCeEEEEccccc
Q 005480 320 KENAPCIVFVDEIDA 334 (694)
Q Consensus 320 ~~~aP~ILfIDEID~ 334 (694)
+.....+||||=...
T Consensus 179 ~~~~~DvViIDTaGr 193 (429)
T TIGR01425 179 KKENFDIIIVDTSGR 193 (429)
T ss_pred HhCCCCEEEEECCCC
Confidence 655567888776543
No 487
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.99 E-value=0.017 Score=69.19 Aligned_cols=97 Identities=25% Similarity=0.340 Sum_probs=56.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---C--CCeeeeehhhH----HHHHhhhhhHHHHHHHHHHH----------hcCCeE
Q 005480 266 GVLLVGPPGTGKTLLAKAIAGEA---G--VPFFSISGSEF----VEMFVGVGASRVRDLFKKAK----------ENAPCI 326 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~e~---~--~pfi~vs~s~~----~~~~~G~~~~~vr~lF~~A~----------~~aP~I 326 (694)
-++|.|+||||||++++++...+ + .+++.+..+.- .....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999995543 4 45554432211 11112222333333332210 123579
Q ss_pred EEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005480 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (694)
Q Consensus 327 LfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (694)
|+|||+..+. ...+..|+..+ ....+++++|=.+..
T Consensus 420 lIvDEaSMvd--------------~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD--------------TWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC--------------HHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999998872 23455666543 345678888866653
No 488
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.98 E-value=0.027 Score=55.13 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=30.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 005480 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (694)
Q Consensus 264 prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~ 302 (694)
+.-+.|.|+||+|||++|+.++..+ +..+..++...+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 3468999999999999999999876 44566666655443
No 489
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.98 E-value=0.13 Score=58.31 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=47.0
Q ss_pred eeeccCCCHHHHHHHHHHhhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHcC
Q 005480 395 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~~~~~~~It~~di~~Ai~~v~~g 474 (694)
.+.+-.+|.++-++-|....+....... .+...+ .-.+|+.+-+.....|...+-..|+..++++++++++.-
T Consensus 386 ~flv~isdeeeH~~Rf~~Ra~~~~~~r~--~~ky~~-----~f~~IR~IQdyLv~~A~~~~ipvI~n~nid~tv~~~l~~ 458 (475)
T PRK12337 386 PMLVTLPDEALHRRRFELRDRETGASRP--RERYLR-----HFEEIRLIQDHLLRLARQEGVPVLPGEDLDESIDKALEV 458 (475)
T ss_pred EEEEEECCHHHHHHHHHHHhhhccCCCc--hhHHHH-----hHHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHHH
Confidence 3566677887766666655554432222 222222 224566666677777778888999999999999887644
No 490
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.96 E-value=0.0069 Score=58.62 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~vs~s~~~ 301 (694)
|.|+|+||||||+|+++|+.. |.+++.=.+.++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999988 8887744444444
No 491
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.95 E-value=0.035 Score=54.21 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=21.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeee
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFS 294 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~---~~pfi~ 294 (694)
|.+|+++|.|||++|-++|-++ |..+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 7789999999999999997655 444443
No 492
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.95 E-value=0.0066 Score=58.67 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeeee
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~~~pfi~v 295 (694)
|.++|++|+|||++|+.+++.++.|++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887653
No 493
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.035 Score=55.39 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=34.5
Q ss_pred CCeEEEEccccccccccCCCCCCCChhHHHHHHHHHhhhcCccCCCCeEEEEecCCccccchhhcC
Q 005480 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 388 (694)
Q Consensus 323 aP~ILfIDEID~l~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlR 388 (694)
...+-++||-.+-. +.+....++.++.+-- ..+=+||+||..|-.++++..+
T Consensus 148 ~~pLWiLDEP~taL----------Dk~g~a~l~~l~~~H~----~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 148 PAPLWILDEPFTAL----------DKEGVALLTALMAAHA----AQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred CCCceeecCccccc----------CHHHHHHHHHHHHHHh----cCCCEEEEecCCccCCCccceE
Confidence 34577789965542 3445567777766432 3455888999998888877776
No 494
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.94 E-value=0.031 Score=58.56 Aligned_cols=43 Identities=40% Similarity=0.516 Sum_probs=33.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH
Q 005480 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (694)
Q Consensus 261 ~~~prgVLL~GPpGTGKT~LArAlA~e~---~~pfi~vs~s~~~~~ 303 (694)
.+..+.+|++|+||||||.++..++.+. |-|+++++..+-.+.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 4444569999999999999999885533 889999987765443
No 495
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.94 E-value=0.047 Score=60.19 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005480 267 VLLVGPPGTGKTLLAKAIAGEA 288 (694)
Q Consensus 267 VLL~GPpGTGKT~LArAlA~e~ 288 (694)
.+|+||||||||+|++.+++..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998866
No 496
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.92 E-value=0.24 Score=55.41 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=30.9
Q ss_pred CeEEEEecC-CccccchhhcCCCccceeeeccCCCHHHHHHHHHHhhcCC
Q 005480 369 GIIVIAATN-RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK 417 (694)
Q Consensus 369 ~ViVIaaTN-~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~Il~~~l~~~ 417 (694)
+|||+.... ....|..+| |.|.-+.|.+.-.+.+.-+.++..++...
T Consensus 185 HVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 444443222 345677777 44766888998888888888887777553
No 497
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.048 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~e 287 (694)
.-+.|.||+|+|||+|++.+++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999973
No 498
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.91 E-value=0.021 Score=58.13 Aligned_cols=27 Identities=37% Similarity=0.868 Sum_probs=21.7
Q ss_pred cCCCCce--EEEEcCCCChHHHHHHHHHH
Q 005480 260 GARIPKG--VLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 260 g~~~prg--VLL~GPpGTGKT~LArAlA~ 286 (694)
.....+| +.++||+|+|||||.|++..
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3344444 89999999999999999965
No 499
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.024 Score=60.37 Aligned_cols=21 Identities=52% Similarity=0.843 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005480 266 GVLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 266 gVLL~GPpGTGKT~LArAlA~ 286 (694)
-+-|.||+|+|||++.|.||+
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 488999999999999999998
No 500
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.91 E-value=0.031 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 005480 265 KGVLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 265 rgVLL~GPpGTGKT~LArAlA~ 286 (694)
+-++|+||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999964
Done!