Query 005480
Match_columns 694
No_of_seqs 537 out of 3876
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:56:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005480.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1985-1989//hhsearch_pdb/005480hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 713.3 46.1 451 219-672 3-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 710.1 44.7 477 207-691 8-488 (499)
3 4b4t_I 26S protease regulatory 1.0 1 1 458.1 16.7 303 171-478 127-430 (437)
4 4b4t_J 26S protease regulatory 1.0 1 1 449.1 27.9 261 218-478 135-396 (405)
5 4b4t_H 26S protease regulatory 1.0 1 1 439.4 27.6 265 215-479 193-458 (467)
6 4b4t_M 26S protease regulatory 1.0 1 1 437.1 24.9 259 218-476 168-427 (434)
7 4b4t_L 26S protease subunit RP 1.0 1 1 434.1 28.5 257 219-475 169-426 (437)
8 4b4t_K 26S protease regulatory 1.0 1 1 426.3 28.7 256 219-474 160-417 (428)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 412.2 10.5 277 224-503 197-494 (806)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 389.0 27.9 232 224-455 470-702 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=713.30 Aligned_cols=451 Identities=56% Similarity=0.942 Sum_probs=422.4
Q ss_pred CCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf 223357-8887755444662889999999999339035643058779329998579883999999999850997135321
Q 005480 219 KFQMEP-NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (694)
Q Consensus 219 ~~~~~~-~~~~~f~di~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs~ 297 (694)
++..+. .+.++|+||+|++++|+++.+++.++++|..|..+|.++|+|+||+||||||||++|+++|++++.||++++|
T Consensus 3 ~~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp --CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCH
T ss_conf 14046778999988818849999999999998407287764378889738998899988899999999981998660789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 35787774310479999999987449909998341000124678899998168999999986411865788769999529
Q 005480 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 298 s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaTN 377 (694)
+++.+.|.|.+..+++.+|+.|+.++||||||||||.++.+|+.+.++++++..+++++||.+||++..+.+++||++||
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 99999973410889999999998459978998566654210046667676889999999999975337888889999568
Q ss_pred CCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 85333032118994220235147997778999999506987773022899998499993999999999999999982996
Q 005480 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (694)
Q Consensus 378 ~~~~LDpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~~~ 457 (694)
+++.+|++++|||||++.+.+++||.++|.+|++.|+++.++..++++..++..++||+|+||.++|++|+..|.+++..
T Consensus 163 ~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~ 242 (476)
T 2ce7_A 163 RPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD 242 (476)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 75663633122675306861589998999999999997278860554999987557983999999999999999974898
Q ss_pred CCCHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-CCCCEEEEECCCCCCCC
Q ss_conf 3388889999999872757763-335776403557788999987316999985122203588-75805786038998877
Q 005480 458 AISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLI 535 (694)
Q Consensus 458 ~It~~di~~Ai~~v~~g~~~~~-~~~~~~~~~va~hEaGhAiv~~~l~~~~~v~kvti~prg-~~~G~~~~~p~~~~~~~ 535 (694)
.|+.+|+..|++++..+.++.. ..+.++++.++|||+|||++++++++.+++++++|+||| +++||+++.|.+|.+++
T Consensus 243 ~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~ 322 (476)
T 2ce7_A 243 KITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLV 322 (476)
T ss_dssp SBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSC
T ss_pred EECHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCC
T ss_conf 23399999999998557443430321001046379986247876314776543504660574200412787673112326
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHH-HHHCCC
Q ss_conf 799999999992305777776619998545820179999999999998508889-897433479884145886-521143
Q 005480 536 SKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMR-MMARNS 613 (694)
Q Consensus 536 tk~~l~~~i~~~LgGRaAEel~fG~~~~ttGa~~Dl~~AT~lA~~mV~~~Gms~-~g~~~~~~~~~~g~~~~~-~~~~~~ 613 (694)
||.+|+++|+++|||||||+++||+ +||||+|||++||+||+.||++||||+ +||+.|...... .|+++ +...++
T Consensus 323 ~~~~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 399 (476)
T 2ce7_A 323 SRNELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQE-VFLGKEITRLRN 399 (476)
T ss_dssp BHHHHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC--------------CCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC-CCCCCCCCCCCC
T ss_conf 7999999999987589999602379--7745078999999999999998488876885131477765-445654334566
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 67989999999999999999999999999959999999999999355699999998701
Q 005480 614 MSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 672 (694)
Q Consensus 614 ~se~~a~~id~ev~~ll~~ay~~A~~iL~~nr~~l~~la~~Lle~EtL~g~ei~~il~~ 672 (694)
||++++..||+||++++++||++|+++|++||+.|+++|++|+|+|||+++|+.+|+++
T Consensus 400 ~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 400 YSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCC
T ss_conf 56778999999999999999999999999969999999999997490589999999645
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=710.08 Aligned_cols=477 Identities=51% Similarity=0.840 Sum_probs=438.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99765444333222335788877554446628899999999993390356430587793299985798839999999998
Q 005480 207 PGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 286 (694)
Q Consensus 207 ~~~~~~~~~s~~~~~~~~~~~~~f~di~G~~e~k~~L~e~v~~l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~ 286 (694)
.+..|+|++|++++..+. +.++|+||+|++++|.++.+++.++++|..|..+|..+|+|+||+||||||||++|+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 8 SDSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp ----------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEECCC-CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 988777566764363269-9999998188399999999999983060655414687886389989999889999999988
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 50997135321357877743104799999999874499099983410001246788999981689999999864118657
Q 005480 287 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (694)
Q Consensus 287 e~~~pfi~vs~s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~ 366 (694)
+++.+|++++++++.+.++|.+..+++.+|+.++...|||+||||||.++.+++.+.++++++..+++++++.+|+++..
T Consensus 87 ~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp HTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred HHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 74898799833687776421589999999999871599889974298898742467678748999999999987414666
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 88769999529853330321189942202351479977789999995069877730228999984999939999999999
Q 005480 367 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNE 446 (694)
Q Consensus 367 ~~~ViVIaaTN~~~~LDpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvne 446 (694)
+..++++++||+|+.||++++|||||++.+.+++||.++|.+||+.|+++.++..++++..++..++||+|+||+++|++
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE 246 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 76189999568845438312556614569852899999999999999826999768889999986389979999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEE
Q ss_conf 999999829963388889999999872757763-3357764035577889999873169999851222035887580578
Q 005480 447 AAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTW 525 (694)
Q Consensus 447 Aa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~~-~~~~~~~~~va~hEaGhAiv~~~l~~~~~v~kvti~prg~~~G~~~ 525 (694)
|+..|.+++...|+.+|+.+|++++..+.++.. ..++++++.++|||+|||++++++++.+++++++|+||++++||++
T Consensus 247 Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~ 326 (499)
T 2dhr_A 247 AALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM 326 (499)
T ss_dssp HHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 99999982898657999999999872364433211247777621899998999986657887066787404777676003
Q ss_pred EECC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHH
Q ss_conf 6038-998877799999999992305777776619998545820179999999999998508889-89743347988414
Q 005480 526 FIPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGD 603 (694)
Q Consensus 526 ~~p~-~~~~~~tk~~l~~~i~~~LgGRaAEel~fG~~~~ttGa~~Dl~~AT~lA~~mV~~~Gms~-~g~~~~~~~~~~g~ 603 (694)
|. ++.+++|+.+++++|+++||||+||+++|| ++||||+|||++||+||+.||++||||+ +|++.|......
T Consensus 327 --p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g--~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~-- 400 (499)
T 2dhr_A 327 --PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFD--DVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDT-- 400 (499)
T ss_dssp --HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSC--SCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCC--
T ss_pred --CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC--
T ss_conf --414654304899999999999643767786303--56766087999999999999998388887884353577764--
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC-CCCCCC
Q ss_conf 5886521143679899999999999999999999999999599999999999993556999999987015589-988889
Q 005480 604 VIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEI-PAENRV 682 (694)
Q Consensus 604 ~~~~~~~~~~~se~~a~~id~ev~~ll~~ay~~A~~iL~~nr~~l~~la~~Lle~EtL~g~ei~~il~~~~~~-~~~~~~ 682 (694)
|++.+. .++||++++..||+||++++++||++|+++|++||+.|++||++|+|+|||+++|+.+|+++.+.. |.+..+
T Consensus 401 ~~~~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 479 (499)
T 2dhr_A 401 YLGGYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLEAPEEARE 479 (499)
T ss_dssp SSCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCCCCC----
T ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCCCCCCCCCHHHH
T ss_conf 334434-3445899999999999999999999999999997999999999999748567999999966388998302343
Q ss_pred CCCCCCCCC
Q ss_conf 999999987
Q 005480 683 PPAVPAPLS 691 (694)
Q Consensus 683 ~~~~~~~~~ 691 (694)
..++|.+++
T Consensus 480 ~~~~~~~~~ 488 (499)
T 2dhr_A 480 EREPPRVVP 488 (499)
T ss_dssp ---------
T ss_pred CCCCCCCCC
T ss_conf 137987678
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=458.15 Aligned_cols=303 Identities=34% Similarity=0.600 Sum_probs=266.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 2579999877889999999999874117999999999976544433322233578887755444662889999999999-
Q 005480 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF- 249 (694)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~di~G~~e~k~~L~e~v~~- 249 (694)
.+++.+...+....+..+.++++.+++...++. .+-....+...+..+..++++|+||+|++++|+++++.+.+
T Consensus 127 ~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~-----l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~P 201 (437)
T 4b4t_I 127 DYYVSILSFVDKELLEPGCSVLLHHKTMSIVGV-----LQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELP 201 (437)
T ss_dssp CCEEECCTTSCGGGCCTTCEEEECTTTCCEEEE-----ECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHCCCCCEEEEECCCCCCEEE-----CCCCCCCCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHH
T ss_conf 899953553578675678689995467522000-----677668745255433689986005576999999999999998
Q ss_pred HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 33903564305877932999857988399999999985099713532135787774310479999999987449909998
Q 005480 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (694)
Q Consensus 250 l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs~s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfI 329 (694)
+++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||
T Consensus 202 l~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfi 281 (437)
T 4b4t_I 202 LTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFI 281 (437)
T ss_dssp HHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 76999998679997778844889996399999999998599879988799531447669999999999998659918987
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 34100012467889999816899999998641186578876999952985333032118994220235147997778999
Q 005480 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (694)
Q Consensus 330 DEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaTN~~~~LDpaLlRpgRfdr~I~i~~Pd~~~R~~I 409 (694)
||||+++.+|..+..+++.+..+++++||.+||++..+.+|+||+|||+|+.||||++||||||+.|+|++||.++|.+|
T Consensus 282 DEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~I 361 (437)
T 4b4t_I 282 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI 361 (437)
T ss_dssp EEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHH
T ss_pred EHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf 61222036677888776589999999999972476788997999957980555998864886027998089699999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 999506987773022899998499993999999999999999982996338888999999987275776
Q 005480 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT 478 (694)
Q Consensus 410 L~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~~~~It~~di~~Ai~~v~~g~~~~ 478 (694)
|+.|+++.++..++++..+|..|+||||+||.++|++|++.|.++++..|+++||..|++++..+..+.
T Consensus 362 l~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 362 LGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp HHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 999964899997679999997679998999999999999999984899669999999999870798733
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=449.12 Aligned_cols=261 Identities=39% Similarity=0.711 Sum_probs=248.8
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 22233578887755444662889999999999-33903564305877932999857988399999999985099713532
Q 005480 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 218 ~~~~~~~~~~~~f~di~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs 296 (694)
..+.....|+++|+||+|++++|+++++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred HHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 61355579999888828889999999999999874999998679998882588589999878999999985188852888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 13578777431047999999998744990999834100012467889999816899999998641186578876999952
Q 005480 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 297 ~s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaT 376 (694)
++++.++|+|++++.++.+|..|+..+||||||||||+++++|..+.++++.+..+++++||.+||++....+|+||+||
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 68951133546899999999999870994676533411115778889997689999999999960433888875788126
Q ss_pred CCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98533303211899422023514799777899999950698777302289999849999399999999999999998299
Q 005480 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (694)
Q Consensus 377 N~~~~LDpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~~ 456 (694)
|+|+.||||++||||||+.|+|++||.++|.+||+.|+++.++..++++..+|..|+||||+||.++|++|++.|.++++
T Consensus 295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~ 374 (405)
T 4b4t_J 295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR 374 (405)
T ss_dssp SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 98144899672877676699769969999999999985599999657999999877999999999999999999998699
Q ss_pred CCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 6338888999999987275776
Q 005480 457 AAISSKEIDDSIDRIVAGMEGT 478 (694)
Q Consensus 457 ~~It~~di~~Ai~~v~~g~~~~ 478 (694)
..|+++||..|+++++....+.
T Consensus 375 ~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 375 IHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp SBCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCC
T ss_conf 8759999999999985726555
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=439.37 Aligned_cols=265 Identities=39% Similarity=0.702 Sum_probs=251.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 33322233578887755444662889999999999-33903564305877932999857988399999999985099713
Q 005480 215 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (694)
Q Consensus 215 ~s~~~~~~~~~~~~~f~di~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi 293 (694)
.....+..+..|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+
T Consensus 193 ~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi 272 (467)
T 4b4t_H 193 PSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI 272 (467)
T ss_dssp CCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 75502001579999878854599999999999998842999998779999981476489998099999999844689869
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 53213578777431047999999998744990999834100012467889999816899999998641186578876999
Q 005480 294 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (694)
Q Consensus 294 ~vs~s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVI 373 (694)
.++++++.++|+|++++.++.+|..|+..+||||||||+|+++.+|+...++......++++++|.+||++....+|+||
T Consensus 273 ~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 273 RVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp EEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred EEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98869950266778999999999998761784675223211013556767786278999999999986555788837988
Q ss_pred EECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 95298533303211899422023514799777899999950698777302289999849999399999999999999998
Q 005480 374 AATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (694)
Q Consensus 374 aaTN~~~~LDpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~ 453 (694)
+|||+|+.||||++||||||+.|+|++||.++|.+||+.|+++.++..++++..+|..|+||||+||.++|++|++.|++
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air 432 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 28789311795463666550799838969999999999985489998777999999777999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 29963388889999999872757763
Q 005480 454 RGKAAISSKEIDDSIDRIVAGMEGTV 479 (694)
Q Consensus 454 ~~~~~It~~di~~Ai~~v~~g~~~~~ 479 (694)
+++..|+++||..|+++++.+.++.+
T Consensus 433 ~~~~~it~~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 433 ARRKVATEKDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp HTCSSBCHHHHHHHHHHHHHHHCC--
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf 38876699999999999964745612
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=437.13 Aligned_cols=259 Identities=37% Similarity=0.684 Sum_probs=246.0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 22233578887755444662889999999999-33903564305877932999857988399999999985099713532
Q 005480 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (694)
Q Consensus 218 ~~~~~~~~~~~~f~di~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs 296 (694)
..+..+..|+++|+||+|++++|+++++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred HHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 43266889799867609579999999999999974999998679998872687794999889999999999599889986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 13578777431047999999998744990999834100012467889999816899999998641186578876999952
Q 005480 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (694)
Q Consensus 297 ~s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaT 376 (694)
++++..+|+|++++.++.+|..|+..+||||||||||+++.+|..+.+++..+..+++++||.+||++..+.+|+||+||
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 44643134563899999999999861990896033256652257788887469999999999971366888998999948
Q ss_pred CCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98533303211899422023514799777899999950698777302289999849999399999999999999998299
Q 005480 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (694)
Q Consensus 377 N~~~~LDpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~~ 456 (694)
|+|+.||||++||||||+.|+|++||.++|.+||+.|+++.++..++++..+|..|+||||+||.++|++|++.|.++++
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99223399671577403899808959999999999985689998767999999868998999999999999999998699
Q ss_pred CCCCHHHHHHHHHHHHCCCC
Q ss_conf 63388889999999872757
Q 005480 457 AAISSKEIDDSIDRIVAGME 476 (694)
Q Consensus 457 ~~It~~di~~Ai~~v~~g~~ 476 (694)
..|+++||..|+.++.+...
T Consensus 408 ~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp SSBCHHHHHHHHHSCSSSCC
T ss_pred CCCCHHHHHHHHHHHHCCCC
T ss_conf 87699999999999737777
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=434.12 Aligned_cols=257 Identities=40% Similarity=0.675 Sum_probs=245.7
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf 2233578887755444662889999999999-339035643058779329998579883999999999850997135321
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (694)
Q Consensus 219 ~~~~~~~~~~~f~di~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs~ 297 (694)
.+.....|+++|+||+|++++|+++++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++
T Consensus 169 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 169 NMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp SCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred EEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEH
T ss_conf 01331599989667178599999999999998749999986798978769998999984999999999985999899841
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 35787774310479999999987449909998341000124678899998168999999986411865788769999529
Q 005480 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 298 s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaTN 377 (694)
+++.++|+|+++..++.+|..|+.++||||||||||+++.+|.......+.+..+++++||.+|||+....+|+||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 46205520178999999999998638964642044333333344788753689999999999834666779869999339
Q ss_pred CCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 85333032118994220235147997778999999506987773022899998499993999999999999999982996
Q 005480 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (694)
Q Consensus 378 ~~~~LDpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~~~ 457 (694)
+|+.||||++||||||+.|+|++||..+|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|++.|.++++.
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~ 408 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD 408 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 90331897827771020013599699999999999865899986458999997689999999999999999999986998
Q ss_pred CCCHHHHHHHHHHHHCCC
Q ss_conf 338888999999987275
Q 005480 458 AISSKEIDDSIDRIVAGM 475 (694)
Q Consensus 458 ~It~~di~~Ai~~v~~g~ 475 (694)
.|+.+||..|++++....
T Consensus 409 ~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 409 HINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp SBCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCC
T ss_conf 779999999999987503
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=426.34 Aligned_cols=256 Identities=40% Similarity=0.668 Sum_probs=244.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf 2233578887755444662889999999999-339035643058779329998579883999999999850997135321
Q 005480 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (694)
Q Consensus 219 ~~~~~~~~~~~f~di~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs~ 297 (694)
.+..+..|+++|+||+|++++|+++++.+.+ +++|+.|..+|..+|+|+|||||||||||++|+|+|++++++|+.+++
T Consensus 160 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 160 VMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred HCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 32677899998888516999999999999998739999986799988658888989988899999999986799699933
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 35787774310479999999987449909998341000124678899998168999999986411865788769999529
Q 005480 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (694)
Q Consensus 298 s~l~~~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaTN 377 (694)
+++.++|+|.++..++.+|..|+.++||||||||+|+++.+|.....+++.+..+++++||.+|||+....+|+||+|||
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 04431454605999999999999739974630022433035567878887189999999999843878779979999619
Q ss_pred CCCCCCHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8533303211899422023514-799777899999950698777302289999849999399999999999999998299
Q 005480 378 RADILDSALLRPGRFDRQVTVD-VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (694)
Q Consensus 378 ~~~~LDpaLlRpgRfdr~I~i~-~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~~ 456 (694)
+|+.||||++||||||+.|++| +||..+|..||+.|+++.++..++++..+|..|+||||+||.++|++|++.|.++++
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 81556966636875159998199999999999999985579999635899999777998899999999999999998799
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 633888899999998727
Q 005480 457 AAISSKEIDDSIDRIVAG 474 (694)
Q Consensus 457 ~~It~~di~~Ai~~v~~g 474 (694)
..|+++||.+|+.+++..
T Consensus 400 ~~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVKT 417 (428)
T ss_dssp SSBCHHHHHHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 877999999999976176
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=412.25 Aligned_cols=277 Identities=38% Similarity=0.617 Sum_probs=246.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHH
Q ss_conf 78887755444662889999999999-33903564305877932999857988399999999985099713532135787
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 224 ~~~~~~f~di~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs~s~l~~ 302 (694)
..+.++|+||+|++++|+++++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++|+++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 58999903514999999999999998751989886358999975897798999889999999997198399997379543
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 77431047999999998744990999834100012467889999816899999998641186578876999952985333
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaTN~~~~L 382 (694)
+|.|+++.+++.+|+.|++++||||||||||+++.+|+.. .++...+++++||.+||++..+.+|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCC---CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHC
T ss_conf 3316789999999999997299299985100233445778---8739999999999997466666987999966980326
Q ss_pred CHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC------
Q ss_conf 03211899422023514799777899999950698777302289999849999399999999999999998299------
Q 005480 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK------ 456 (694)
Q Consensus 383 DpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~~------ 456 (694)
|++++|||||++.|++++||..+|.+||+.|+++.++..++++..+|..|.||+|+||.++|++|++.|.++..
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98885786361688668979899999999985689988643899999756899899999999999999998414512000
Q ss_pred -----------CCCCHHHHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHC
Q ss_conf -----------63388889999999872757763335---776403557788999987316
Q 005480 457 -----------AAISSKEIDDSIDRIVAGMEGTVMTD---GKSKSLVAYHEVGHAICGTLT 503 (694)
Q Consensus 457 -----------~~It~~di~~Ai~~v~~g~~~~~~~~---~~~~~~va~hEaGhAiv~~~l 503 (694)
..++.+||..|+..+.+...+..... .....+..+.++...+...+.
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~ 494 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 494 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTT
T ss_pred CCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 1332045522556519999999972878311234445788788881788999999999997
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=389.01 Aligned_cols=232 Identities=42% Similarity=0.781 Sum_probs=222.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHH
Q ss_conf 78887755444662889999999999-33903564305877932999857988399999999985099713532135787
Q 005480 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (694)
Q Consensus 224 ~~~~~~f~di~G~~e~k~~L~e~v~~-l~~p~~~~~lg~~~prgvLL~GppGTGKT~LAkAiA~e~~~pfi~vs~s~l~~ 302 (694)
..+.++|+|++|++++|+++.+.+.+ +++|+.|.+.|..+|+|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHC
T ss_conf 57887888817889999999999975666899997148888860798668778963999999998389668742411210
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 77431047999999998744990999834100012467889999816899999998641186578876999952985333
Q 005480 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (694)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~l~~LL~~ldg~~~~~~ViVIaaTN~~~~L 382 (694)
+|+|++++.++.+|+.|+..+||||||||||+++.+|+...++++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHC
T ss_conf 33436899999999999972996352042567763158888898669999999999997487877998999937980438
Q ss_pred CHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 0321189942202351479977789999995069877730228999984999939999999999999999829
Q 005480 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (694)
Q Consensus 383 DpaLlRpgRfdr~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgaDL~~lvneAa~~A~~~~ 455 (694)
|+|++||||||+.|+|++||.++|.+||+.|+++.++..++++..+|..|+||||+||.++|++|++.|.++.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred CHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9847177855079997996999999999998567999877899999976899999999999999999999999
Done!