Query 005481
Match_columns 694
No_of_seqs 840 out of 4438
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 00:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-136 4E-141 1174.7 74.5 677 6-692 181-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-126 5E-131 1066.5 68.5 613 75-694 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 6.4E-83 1.4E-87 732.4 63.4 655 6-689 80-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.3E-67 1.1E-71 588.3 60.7 504 43-556 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 9.6E-68 2.1E-72 592.8 50.0 441 6-451 117-560 (697)
6 PLN03218 maturation of RBCL 1; 100.0 4.3E-64 9.3E-69 564.8 49.6 461 10-487 435-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-30 2.4E-35 306.6 58.6 527 11-551 328-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-30 6.4E-35 303.0 59.3 519 17-549 300-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.5E-33 3.2E-38 232.6 6.7 106 556-684 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 6E-22 1.3E-26 233.7 57.3 520 15-549 31-700 (1157)
11 PRK11447 cellulose synthase su 99.9 1.2E-21 2.6E-26 231.1 57.9 513 18-548 118-739 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 3.3E-22 7.1E-27 199.5 36.1 447 81-542 51-512 (966)
13 PRK09782 bacteriophage N4 rece 99.9 4.1E-19 8.9E-24 200.3 56.6 508 25-549 57-706 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4.8E-21 1E-25 191.2 31.7 420 118-551 53-487 (966)
15 PRK09782 bacteriophage N4 rece 99.9 6.1E-18 1.3E-22 190.9 52.0 519 9-551 178-742 (987)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-17 3.2E-22 184.6 40.9 413 120-549 134-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 1.8E-18 3.8E-23 182.2 28.0 289 261-556 45-354 (389)
18 PRK15174 Vi polysaccharide exp 99.8 5.4E-17 1.2E-21 179.4 38.7 350 160-520 17-386 (656)
19 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.5E-22 176.1 31.7 294 185-514 41-346 (389)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-16 3.4E-21 176.4 42.1 437 81-548 130-596 (615)
21 PRK10049 pgaA outer membrane p 99.8 4.8E-16 1E-20 175.7 45.4 389 123-549 25-456 (765)
22 PRK15174 Vi polysaccharide exp 99.8 7.3E-16 1.6E-20 170.5 35.6 326 213-550 41-382 (656)
23 PRK14574 hmsH outer membrane p 99.8 1.6E-14 3.5E-19 160.1 43.8 435 56-522 43-520 (822)
24 PRK14574 hmsH outer membrane p 99.8 2.1E-14 4.6E-19 159.1 44.6 435 88-549 44-513 (822)
25 KOG2002 TPR-containing nuclear 99.8 1.6E-14 3.5E-19 152.9 40.9 515 17-550 167-746 (1018)
26 PRK10049 pgaA outer membrane p 99.7 3.9E-14 8.4E-19 160.3 43.8 405 10-448 13-457 (765)
27 KOG2002 TPR-containing nuclear 99.7 4.2E-14 9.2E-19 149.7 40.5 537 3-552 192-801 (1018)
28 KOG4422 Uncharacterized conser 99.7 2.4E-13 5.1E-18 131.2 39.7 421 13-480 117-587 (625)
29 KOG2076 RNA polymerase III tra 99.7 2.5E-12 5.4E-17 135.7 47.3 345 22-370 149-544 (895)
30 KOG2003 TPR repeat-containing 99.6 1.6E-13 3.4E-18 133.0 26.8 469 43-535 197-709 (840)
31 KOG4422 Uncharacterized conser 99.6 8.3E-12 1.8E-16 120.7 36.3 417 78-516 116-591 (625)
32 KOG0495 HAT repeat protein [RN 99.6 2.7E-10 5.9E-15 116.0 46.8 508 25-550 264-847 (913)
33 KOG0495 HAT repeat protein [RN 99.6 3.2E-10 6.8E-15 115.5 47.1 507 32-562 366-891 (913)
34 PF13429 TPR_15: Tetratricopep 99.6 5.6E-15 1.2E-19 147.3 10.7 254 290-548 16-276 (280)
35 KOG4318 Bicoid mRNA stability 99.5 2.9E-11 6.2E-16 127.1 33.5 526 5-559 18-603 (1088)
36 KOG0547 Translocase of outer m 99.5 5.1E-11 1.1E-15 117.4 30.7 403 81-547 118-564 (606)
37 KOG1155 Anaphase-promoting com 99.5 1.4E-10 3.1E-15 113.6 33.5 325 212-548 162-494 (559)
38 KOG2076 RNA polymerase III tra 99.5 5.6E-11 1.2E-15 125.7 31.8 331 193-560 153-523 (895)
39 KOG1915 Cell cycle control pro 99.5 5.9E-09 1.3E-13 102.6 41.5 491 48-548 74-624 (677)
40 KOG1126 DNA-binding cell divis 99.5 1E-11 2.3E-16 127.2 22.0 274 266-549 334-620 (638)
41 KOG1126 DNA-binding cell divis 99.5 9.1E-12 2E-16 127.7 21.3 244 297-549 334-586 (638)
42 KOG1155 Anaphase-promoting com 99.4 3.8E-10 8.3E-15 110.7 31.4 244 294-546 274-533 (559)
43 PRK10747 putative protoheme IX 99.4 8.4E-11 1.8E-15 122.8 28.3 288 192-516 97-391 (398)
44 KOG1915 Cell cycle control pro 99.4 3.9E-09 8.4E-14 103.9 37.1 457 80-547 75-583 (677)
45 PRK10747 putative protoheme IX 99.4 9.4E-11 2E-15 122.5 28.3 275 264-548 97-389 (398)
46 TIGR00540 hemY_coli hemY prote 99.4 3.3E-10 7.2E-15 119.0 31.7 290 190-513 95-397 (409)
47 TIGR00540 hemY_coli hemY prote 99.4 1.2E-10 2.6E-15 122.3 27.2 282 159-480 95-396 (409)
48 KOG1173 Anaphase-promoting com 99.4 2.6E-09 5.7E-14 107.6 33.5 477 14-548 18-517 (611)
49 KOG2003 TPR repeat-containing 99.4 8.7E-10 1.9E-14 107.5 29.1 435 85-548 208-688 (840)
50 PF13429 TPR_15: Tetratricopep 99.4 1.5E-12 3.3E-17 129.8 9.9 250 257-514 14-276 (280)
51 COG2956 Predicted N-acetylgluc 99.3 1.7E-09 3.7E-14 101.5 26.4 287 191-513 47-345 (389)
52 KOG2047 mRNA splicing factor [ 99.3 2.8E-07 6.2E-12 94.4 44.0 432 23-461 113-629 (835)
53 TIGR02521 type_IV_pilW type IV 99.3 1.9E-10 4.2E-15 111.4 21.5 197 351-548 30-231 (234)
54 KOG4318 Bicoid mRNA stability 99.3 1.3E-09 2.9E-14 114.8 26.0 444 74-548 21-556 (1088)
55 COG3071 HemY Uncharacterized e 99.3 8.4E-09 1.8E-13 100.0 28.7 285 192-513 97-388 (400)
56 KOG3785 Uncharacterized conser 99.3 8.4E-08 1.8E-12 91.2 33.7 471 20-555 30-520 (557)
57 PF13041 PPR_2: PPR repeat fam 99.3 8.4E-12 1.8E-16 87.2 5.2 50 76-125 1-50 (50)
58 KOG4162 Predicted calmodulin-b 99.2 5.7E-08 1.2E-12 101.7 34.8 401 142-550 317-784 (799)
59 KOG1174 Anaphase-promoting com 99.2 8E-08 1.7E-12 93.3 32.6 302 212-521 192-506 (564)
60 PF13041 PPR_2: PPR repeat fam 99.2 2.8E-11 6E-16 84.6 6.7 50 381-430 1-50 (50)
61 KOG1840 Kinesin light chain [C 99.2 2.8E-09 6E-14 110.9 23.3 230 318-547 200-477 (508)
62 COG2956 Predicted N-acetylgluc 99.2 2.4E-08 5.3E-13 93.9 26.5 310 227-570 48-368 (389)
63 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.7E-11 89.9 38.9 488 47-548 102-686 (835)
64 KOG1173 Anaphase-promoting com 99.1 7.3E-07 1.6E-11 90.4 35.4 286 179-497 244-533 (611)
65 PRK12370 invasion protein regu 99.1 8.7E-09 1.9E-13 112.6 24.0 244 297-550 276-536 (553)
66 COG3071 HemY Uncharacterized e 99.1 8.1E-08 1.8E-12 93.4 27.3 284 91-411 97-389 (400)
67 KOG2376 Signal recognition par 99.1 3.6E-06 7.8E-11 85.9 39.2 459 17-543 17-514 (652)
68 KOG0547 Translocase of outer m 99.1 2.7E-07 5.8E-12 91.7 29.5 216 191-445 338-564 (606)
69 PRK12370 invasion protein regu 99.1 9.7E-09 2.1E-13 112.2 22.0 211 331-549 275-502 (553)
70 PRK11189 lipoprotein NlpI; Pro 99.1 6.9E-09 1.5E-13 103.7 19.2 189 353-550 65-266 (296)
71 KOG0985 Vesicle coat protein c 99.1 2.3E-06 4.9E-11 92.0 37.8 466 49-546 608-1246(1666)
72 KOG1129 TPR repeat-containing 99.1 4E-09 8.7E-14 98.9 15.5 229 287-550 228-459 (478)
73 COG3063 PilF Tfp pilus assembl 99.1 1.1E-08 2.5E-13 91.9 17.5 162 385-551 37-204 (250)
74 TIGR02521 type_IV_pilW type IV 99.0 3.8E-08 8.1E-13 95.2 21.8 197 282-517 31-234 (234)
75 KOG1840 Kinesin light chain [C 99.0 9E-08 2E-12 99.8 25.4 127 387-513 329-477 (508)
76 KOG3616 Selective LIM binding 99.0 1E-06 2.2E-11 91.4 31.7 451 22-545 500-962 (1636)
77 KOG4162 Predicted calmodulin-b 99.0 2.9E-06 6.2E-11 89.3 33.2 442 42-521 318-789 (799)
78 KOG3785 Uncharacterized conser 99.0 8.2E-06 1.8E-10 78.0 32.6 188 357-549 290-490 (557)
79 PRK11189 lipoprotein NlpI; Pro 98.9 2.7E-07 5.8E-12 92.3 23.3 198 324-529 71-280 (296)
80 KOG3616 Selective LIM binding 98.9 7.9E-06 1.7E-10 85.0 32.0 435 51-549 561-1024(1636)
81 KOG0985 Vesicle coat protein c 98.9 2.6E-05 5.6E-10 84.2 35.5 346 18-406 844-1217(1666)
82 KOG1156 N-terminal acetyltrans 98.9 8.3E-05 1.8E-09 77.1 37.9 457 9-512 4-508 (700)
83 KOG3617 WD40 and TPR repeat-co 98.8 8.9E-05 1.9E-09 78.6 37.7 222 22-278 738-994 (1416)
84 KOG1129 TPR repeat-containing 98.8 1.1E-07 2.4E-12 89.5 14.9 225 82-310 227-457 (478)
85 KOG1156 N-terminal acetyltrans 98.8 0.00011 2.4E-09 76.3 37.4 453 81-547 11-509 (700)
86 PF04733 Coatomer_E: Coatomer 98.8 2.6E-07 5.6E-12 91.0 17.7 147 393-548 112-264 (290)
87 PF12569 NARP1: NMDA receptor- 98.8 2.8E-05 6E-10 82.5 33.8 430 86-545 12-516 (517)
88 PRK04841 transcriptional regul 98.8 0.00032 7E-09 82.7 45.9 366 156-549 349-760 (903)
89 COG3063 PilF Tfp pilus assembl 98.8 1.6E-06 3.5E-11 78.3 19.8 198 284-520 37-241 (250)
90 KOG0624 dsRNA-activated protei 98.8 1.7E-05 3.7E-10 75.6 27.0 194 150-419 40-257 (504)
91 KOG1127 TPR repeat-containing 98.7 5.1E-05 1.1E-09 82.2 33.0 175 32-207 476-658 (1238)
92 KOG1125 TPR repeat-containing 98.7 2.4E-07 5.3E-12 94.2 14.7 219 328-549 296-527 (579)
93 KOG0548 Molecular co-chaperone 98.7 8.5E-06 1.8E-10 82.6 24.8 215 321-549 228-455 (539)
94 KOG1127 TPR repeat-containing 98.7 6.1E-05 1.3E-09 81.6 32.4 522 15-548 495-1103(1238)
95 KOG3617 WD40 and TPR repeat-co 98.7 1.9E-05 4.2E-10 83.4 27.9 405 45-504 724-1189(1416)
96 KOG1174 Anaphase-promoting com 98.7 0.00011 2.4E-09 72.0 31.2 154 326-485 343-503 (564)
97 KOG0548 Molecular co-chaperone 98.7 4.5E-05 9.8E-10 77.5 29.1 241 255-533 228-473 (539)
98 PF12569 NARP1: NMDA receptor- 98.7 2.7E-05 5.9E-10 82.6 28.9 125 421-548 197-333 (517)
99 PF04733 Coatomer_E: Coatomer 98.7 1.6E-06 3.4E-11 85.5 18.2 158 356-520 106-270 (290)
100 cd05804 StaR_like StaR_like; a 98.7 2.4E-05 5.3E-10 81.1 28.0 294 252-550 7-337 (355)
101 PRK15359 type III secretion sy 98.6 9.7E-07 2.1E-11 77.6 14.1 121 404-531 14-137 (144)
102 KOG2376 Signal recognition par 98.6 0.00037 7.9E-09 71.8 33.9 408 85-548 19-486 (652)
103 TIGR03302 OM_YfiO outer membra 98.6 3.2E-06 6.9E-11 81.9 18.5 178 352-549 33-232 (235)
104 PRK15359 type III secretion sy 98.5 1.2E-06 2.6E-11 77.0 12.3 106 439-549 14-121 (144)
105 cd05804 StaR_like StaR_like; a 98.5 0.00013 2.8E-09 75.8 29.7 298 179-515 6-336 (355)
106 KOG4340 Uncharacterized conser 98.5 0.00019 4.2E-09 67.3 26.3 406 116-548 13-442 (459)
107 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 59.1 4.0 33 42-74 2-34 (34)
108 PRK10370 formate-dependent nit 98.5 5.7E-06 1.2E-10 77.0 16.6 117 431-549 52-173 (198)
109 PRK04841 transcriptional regul 98.5 0.00024 5.1E-09 83.8 34.1 322 125-446 386-759 (903)
110 PRK15179 Vi polysaccharide bio 98.5 8.5E-06 1.8E-10 89.7 19.7 138 382-524 85-226 (694)
111 KOG1125 TPR repeat-containing 98.5 8.9E-06 1.9E-10 83.1 18.1 216 224-446 295-526 (579)
112 KOG1914 mRNA cleavage and poly 98.5 0.0024 5.3E-08 65.2 36.9 420 44-470 17-526 (656)
113 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.4E-12 58.3 3.9 33 143-175 2-34 (34)
114 KOG0624 dsRNA-activated protei 98.5 0.00037 8.1E-09 66.8 26.9 174 112-310 37-217 (504)
115 KOG1128 Uncharacterized conser 98.5 7.3E-06 1.6E-10 85.9 17.1 217 249-515 396-616 (777)
116 KOG1070 rRNA processing protei 98.4 1.6E-05 3.5E-10 88.8 19.6 198 351-552 1457-1666(1710)
117 PRK15363 pathogenicity island 98.4 3.8E-06 8.2E-11 72.5 10.7 97 453-549 34-132 (157)
118 PRK10370 formate-dependent nit 98.4 3.3E-05 7.2E-10 71.8 17.9 154 359-524 23-182 (198)
119 COG5010 TadD Flp pilus assembl 98.3 1.8E-05 4E-10 73.2 14.3 134 414-549 62-197 (257)
120 KOG4340 Uncharacterized conser 98.3 5E-05 1.1E-09 71.1 17.1 303 217-545 13-335 (459)
121 TIGR03302 OM_YfiO outer membra 98.3 2E-05 4.4E-10 76.3 15.7 180 317-517 33-234 (235)
122 KOG1128 Uncharacterized conser 98.3 2E-05 4.3E-10 82.7 15.4 189 347-550 393-583 (777)
123 PLN02789 farnesyltranstransfer 98.3 0.00014 3.1E-09 72.7 21.2 168 362-533 81-268 (320)
124 TIGR02552 LcrH_SycD type III s 98.2 1.7E-05 3.6E-10 69.3 11.9 100 450-549 12-114 (135)
125 PRK15179 Vi polysaccharide bio 98.2 0.00011 2.5E-09 81.0 20.5 142 348-494 82-230 (694)
126 KOG1070 rRNA processing protei 98.2 0.00024 5.2E-09 79.9 22.5 228 212-440 1455-1693(1710)
127 PRK14720 transcript cleavage f 98.1 0.00025 5.4E-09 79.1 21.3 233 249-531 29-268 (906)
128 COG5010 TadD Flp pilus assembl 98.1 0.00018 3.8E-09 66.9 16.9 150 358-511 72-227 (257)
129 TIGR00756 PPR pentatricopeptid 98.1 3.9E-06 8.5E-11 53.3 4.5 35 79-113 1-35 (35)
130 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.4E-11 53.1 4.5 34 384-417 1-34 (35)
131 COG4783 Putative Zn-dependent 98.1 0.00036 7.7E-09 70.5 19.0 114 430-545 318-433 (484)
132 PLN02789 farnesyltranstransfer 98.1 0.00036 7.8E-09 69.9 19.1 181 362-547 47-248 (320)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.5E-05 1.6E-09 76.1 14.0 121 422-547 173-295 (395)
134 COG4783 Putative Zn-dependent 98.0 0.00071 1.5E-08 68.4 19.5 146 383-550 306-455 (484)
135 PF13812 PPR_3: Pentatricopept 98.0 9.3E-06 2E-10 51.2 4.1 34 78-111 1-34 (34)
136 TIGR02552 LcrH_SycD type III s 98.0 0.00017 3.7E-09 62.8 13.4 113 405-521 5-120 (135)
137 KOG1914 mRNA cleavage and poly 98.0 0.032 6.9E-07 57.4 35.2 430 110-546 17-536 (656)
138 KOG0553 TPR repeat-containing 98.0 0.00013 2.7E-09 69.2 12.3 114 401-529 76-192 (304)
139 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 49.9 4.3 33 384-416 2-34 (34)
140 PF04840 Vps16_C: Vps16, C-ter 97.9 0.025 5.4E-07 56.6 28.5 122 355-496 180-301 (319)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0003 6.5E-09 71.8 14.9 127 354-484 171-298 (395)
142 cd00189 TPR Tetratricopeptide 97.9 0.00014 2.9E-09 58.4 9.9 92 457-548 3-96 (100)
143 PF09976 TPR_21: Tetratricopep 97.8 0.0005 1.1E-08 60.6 13.8 114 431-545 24-143 (145)
144 KOG3081 Vesicle coat complex C 97.8 0.0066 1.4E-07 56.7 21.0 146 392-547 117-269 (299)
145 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00026 5.6E-09 60.0 10.8 92 458-549 6-105 (119)
146 PF13414 TPR_11: TPR repeat; P 97.8 4.9E-05 1.1E-09 57.2 5.5 64 485-548 2-66 (69)
147 PF12895 Apc3: Anaphase-promot 97.8 2.5E-05 5.4E-10 61.5 3.9 78 467-545 2-83 (84)
148 PRK10153 DNA-binding transcrip 97.8 0.0011 2.5E-08 70.9 17.4 139 380-520 334-487 (517)
149 PLN03088 SGT1, suppressor of 97.7 0.00042 9E-09 71.1 13.0 99 425-526 9-110 (356)
150 PRK14720 transcript cleavage f 97.7 0.0034 7.5E-08 70.3 20.8 149 214-394 116-268 (906)
151 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00048 1E-08 58.3 11.5 103 421-523 5-113 (119)
152 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.3E-10 46.9 3.6 31 79-109 1-31 (31)
153 PF09976 TPR_21: Tetratricopep 97.7 0.002 4.2E-08 56.8 15.3 124 386-513 15-145 (145)
154 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.1E-09 46.4 3.7 31 384-414 1-31 (31)
155 CHL00033 ycf3 photosystem I as 97.7 0.00042 9.1E-09 63.0 10.7 93 454-546 35-139 (168)
156 KOG0550 Molecular chaperone (D 97.6 0.0014 3E-08 64.8 14.3 263 259-549 57-350 (486)
157 KOG3060 Uncharacterized conser 97.6 0.0037 8.1E-08 57.8 16.0 182 365-550 25-221 (289)
158 PRK02603 photosystem I assembl 97.6 0.00057 1.2E-08 62.4 11.2 81 455-535 36-121 (172)
159 KOG3060 Uncharacterized conser 97.6 0.0058 1.3E-07 56.6 17.0 166 354-524 54-229 (289)
160 PF13432 TPR_16: Tetratricopep 97.6 0.00016 3.4E-09 53.6 6.0 58 492-549 3-60 (65)
161 PLN03088 SGT1, suppressor of 97.6 0.00075 1.6E-08 69.2 12.9 103 389-496 8-113 (356)
162 KOG2053 Mitochondrial inherita 97.6 0.18 3.8E-06 55.4 37.1 89 457-547 439-534 (932)
163 PRK02603 photosystem I assembl 97.6 0.0018 3.9E-08 59.0 14.0 130 382-535 34-166 (172)
164 KOG3081 Vesicle coat complex C 97.6 0.013 2.8E-07 54.8 18.5 184 360-550 49-237 (299)
165 PRK15331 chaperone protein Sic 97.5 0.0019 4.1E-08 56.3 12.3 90 459-548 42-133 (165)
166 cd00189 TPR Tetratricopeptide 97.5 0.0013 2.9E-08 52.4 10.5 61 457-517 37-99 (100)
167 PF13432 TPR_16: Tetratricopep 97.5 0.00037 7.9E-09 51.6 6.3 61 460-520 3-65 (65)
168 COG4700 Uncharacterized protei 97.5 0.01 2.2E-07 52.2 15.6 133 414-548 85-221 (251)
169 KOG0553 TPR repeat-containing 97.4 0.00093 2E-08 63.5 9.9 88 461-548 88-177 (304)
170 PF07079 DUF1347: Protein of u 97.4 0.19 4E-06 50.9 36.1 446 23-491 17-530 (549)
171 PF13371 TPR_9: Tetratricopept 97.4 0.00053 1.2E-08 52.2 6.1 57 494-550 3-59 (73)
172 CHL00033 ycf3 photosystem I as 97.4 0.0097 2.1E-07 54.0 15.5 80 383-465 35-117 (168)
173 KOG2053 Mitochondrial inherita 97.3 0.39 8.5E-06 52.9 40.5 217 24-246 21-258 (932)
174 PRK10153 DNA-binding transcrip 97.3 0.0081 1.8E-07 64.5 16.5 134 413-550 332-483 (517)
175 PF13431 TPR_17: Tetratricopep 97.3 0.00012 2.6E-09 45.7 1.6 33 509-541 2-34 (34)
176 COG4235 Cytochrome c biogenesi 97.3 0.00076 1.6E-08 64.5 7.7 101 452-552 154-259 (287)
177 PF07079 DUF1347: Protein of u 97.3 0.25 5.5E-06 50.0 32.8 73 473-546 443-521 (549)
178 PF12895 Apc3: Anaphase-promot 97.3 0.00069 1.5E-08 53.2 5.8 80 396-479 2-83 (84)
179 PF14559 TPR_19: Tetratricopep 97.2 0.00033 7.2E-09 52.4 3.5 52 497-548 2-53 (68)
180 PF05843 Suf: Suppressor of fo 97.2 0.011 2.5E-07 58.4 15.2 134 384-520 2-141 (280)
181 PF14559 TPR_19: Tetratricopep 97.2 0.00052 1.1E-08 51.3 4.0 48 430-480 3-51 (68)
182 KOG1130 Predicted G-alpha GTPa 97.2 0.0021 4.6E-08 63.3 9.0 128 420-547 197-342 (639)
183 COG4700 Uncharacterized protei 97.1 0.011 2.4E-07 52.0 12.2 106 444-549 79-189 (251)
184 PF13414 TPR_11: TPR repeat; P 97.1 0.00093 2E-08 50.1 5.2 64 454-517 3-69 (69)
185 KOG2280 Vacuolar assembly/sort 97.1 0.6 1.3E-05 50.4 27.4 342 106-479 425-795 (829)
186 PRK15363 pathogenicity island 97.0 0.012 2.7E-07 51.1 11.8 86 388-478 40-127 (157)
187 PF14938 SNAP: Soluble NSF att 97.0 0.04 8.7E-07 54.7 17.4 57 389-446 120-183 (282)
188 COG3898 Uncharacterized membra 97.0 0.44 9.5E-06 47.4 27.6 243 294-548 132-391 (531)
189 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0027 5.8E-08 64.7 8.4 63 486-548 75-140 (453)
190 PF13281 DUF4071: Domain of un 96.9 0.098 2.1E-06 52.9 18.9 160 357-519 146-338 (374)
191 PF12688 TPR_5: Tetratrico pep 96.9 0.01 2.2E-07 49.6 10.2 86 461-546 8-101 (120)
192 PRK10803 tol-pal system protei 96.9 0.0057 1.2E-07 59.4 9.6 92 457-548 146-245 (263)
193 PF14938 SNAP: Soluble NSF att 96.9 0.4 8.7E-06 47.6 23.2 100 182-281 158-267 (282)
194 PF08579 RPM2: Mitochondrial r 96.9 0.015 3.2E-07 46.9 10.0 80 386-466 28-116 (120)
195 PF06239 ECSIT: Evolutionarily 96.9 0.0093 2E-07 54.4 10.0 97 372-469 34-153 (228)
196 PF08579 RPM2: Mitochondrial r 96.9 0.0081 1.8E-07 48.4 8.4 80 81-160 28-116 (120)
197 PF10037 MRP-S27: Mitochondria 96.8 0.012 2.6E-07 60.6 11.7 118 44-161 63-186 (429)
198 PF13428 TPR_14: Tetratricopep 96.8 0.0018 4E-08 43.3 3.8 42 487-528 2-43 (44)
199 PF05843 Suf: Suppressor of fo 96.8 0.013 2.9E-07 57.9 11.6 129 419-549 2-136 (280)
200 PF10037 MRP-S27: Mitochondria 96.8 0.022 4.8E-07 58.7 13.1 122 209-330 61-186 (429)
201 KOG2041 WD40 repeat protein [G 96.7 1.1 2.3E-05 48.0 29.1 144 359-513 930-1084(1189)
202 PF06239 ECSIT: Evolutionarily 96.7 0.034 7.3E-07 50.8 12.4 102 330-446 65-167 (228)
203 PRK10866 outer membrane biogen 96.7 0.1 2.2E-06 50.3 16.8 55 493-547 182-239 (243)
204 KOG1538 Uncharacterized conser 96.7 0.23 4.9E-06 52.3 19.5 199 116-380 601-801 (1081)
205 KOG2796 Uncharacterized conser 96.7 0.07 1.5E-06 49.8 14.1 167 254-422 139-323 (366)
206 PF12688 TPR_5: Tetratrico pep 96.7 0.044 9.6E-07 45.9 12.0 90 185-274 7-98 (120)
207 KOG2041 WD40 repeat protein [G 96.7 1.2 2.6E-05 47.7 25.3 151 60-237 747-901 (1189)
208 PRK10866 outer membrane biogen 96.6 0.26 5.7E-06 47.4 18.8 56 257-312 38-99 (243)
209 KOG0543 FKBP-type peptidyl-pro 96.6 0.024 5.2E-07 56.6 11.6 83 486-594 257-339 (397)
210 KOG1538 Uncharacterized conser 96.6 0.09 1.9E-06 55.2 15.8 164 93-279 615-801 (1081)
211 PF04840 Vps16_C: Vps16, C-ter 96.6 0.95 2.1E-05 45.4 28.6 106 253-374 179-284 (319)
212 PF13371 TPR_9: Tetratricopept 96.5 0.0082 1.8E-07 45.5 6.3 63 462-524 3-67 (73)
213 KOG2796 Uncharacterized conser 96.5 0.13 2.9E-06 48.1 14.5 137 385-521 179-321 (366)
214 PRK10803 tol-pal system protei 96.4 0.031 6.8E-07 54.3 11.0 100 421-520 146-251 (263)
215 PF03704 BTAD: Bacterial trans 96.3 0.064 1.4E-06 47.2 11.4 106 429-548 17-124 (146)
216 COG0457 NrfG FOG: TPR repeat [ 96.2 1.2 2.5E-05 42.2 25.7 194 352-549 59-265 (291)
217 PF13424 TPR_12: Tetratricopep 96.1 0.0077 1.7E-07 46.4 4.0 24 489-512 49-72 (78)
218 KOG4555 TPR repeat-containing 96.1 0.052 1.1E-06 44.9 8.6 89 463-551 52-146 (175)
219 PF13424 TPR_12: Tetratricopep 96.0 0.009 2E-07 46.0 4.0 62 487-548 6-74 (78)
220 KOG0550 Molecular chaperone (D 96.0 1.3 2.8E-05 44.6 19.2 148 327-480 179-347 (486)
221 KOG1258 mRNA processing protei 96.0 2.8 6.1E-05 44.5 28.5 181 351-534 296-489 (577)
222 KOG1130 Predicted G-alpha GTPa 95.9 0.035 7.5E-07 55.1 8.2 129 318-446 196-343 (639)
223 COG3898 Uncharacterized membra 95.9 2.2 4.7E-05 42.7 26.5 284 182-480 85-389 (531)
224 PF09205 DUF1955: Domain of un 95.9 0.85 1.8E-05 38.1 14.7 139 395-552 14-152 (161)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.057 1.2E-06 55.3 9.7 62 454-515 75-141 (453)
226 PF13525 YfiO: Outer membrane 95.7 0.74 1.6E-05 43.1 16.2 48 493-540 148-198 (203)
227 PF13525 YfiO: Outer membrane 95.6 0.34 7.4E-06 45.3 13.8 180 257-473 11-197 (203)
228 PRK11906 transcriptional regul 95.6 0.54 1.2E-05 48.5 15.5 142 399-544 274-431 (458)
229 PF12921 ATP13: Mitochondrial 95.5 0.14 3.1E-06 43.3 9.7 46 449-494 47-96 (126)
230 PF12921 ATP13: Mitochondrial 95.5 0.17 3.6E-06 42.9 9.9 98 352-465 2-99 (126)
231 PRK11906 transcriptional regul 95.3 0.32 6.9E-06 50.1 12.8 117 433-549 273-401 (458)
232 KOG0543 FKBP-type peptidyl-pro 95.1 0.2 4.3E-06 50.3 10.6 95 455-549 258-355 (397)
233 COG0457 NrfG FOG: TPR repeat [ 95.1 3 6.5E-05 39.2 23.9 160 354-518 97-268 (291)
234 COG4235 Cytochrome c biogenesi 95.1 0.53 1.1E-05 45.5 13.1 102 417-520 155-261 (287)
235 KOG1920 IkappaB kinase complex 95.0 3 6.5E-05 47.9 20.2 23 254-276 793-817 (1265)
236 KOG2066 Vacuolar assembly/sort 94.9 7.6 0.00016 42.7 24.7 76 148-226 392-467 (846)
237 PF00515 TPR_1: Tetratricopept 94.9 0.042 9E-07 34.1 3.5 32 487-518 2-33 (34)
238 PF13512 TPR_18: Tetratricopep 94.8 0.57 1.2E-05 40.1 11.1 58 463-520 19-81 (142)
239 PF07719 TPR_2: Tetratricopept 94.7 0.065 1.4E-06 33.2 4.2 33 487-519 2-34 (34)
240 PF04184 ST7: ST7 protein; In 94.6 0.61 1.3E-05 48.2 12.6 149 393-555 178-330 (539)
241 KOG3941 Intermediate in Toll s 94.6 0.31 6.8E-06 46.1 9.7 101 370-471 52-175 (406)
242 COG5107 RNA14 Pre-mRNA 3'-end 94.5 6.5 0.00014 40.2 33.6 397 145-548 39-530 (660)
243 COG1729 Uncharacterized protei 94.4 0.25 5.3E-06 47.1 8.9 57 492-548 184-243 (262)
244 KOG2280 Vacuolar assembly/sort 94.4 9.7 0.00021 41.7 31.7 115 415-545 681-795 (829)
245 smart00299 CLH Clathrin heavy 94.0 3.4 7.3E-05 35.8 15.0 86 15-104 10-95 (140)
246 PF03704 BTAD: Bacterial trans 93.9 0.51 1.1E-05 41.4 9.5 69 386-456 65-138 (146)
247 PF04053 Coatomer_WDAD: Coatom 93.8 0.73 1.6E-05 48.5 11.9 133 392-550 270-403 (443)
248 PF13281 DUF4071: Domain of un 93.7 6.3 0.00014 40.2 17.8 72 256-327 146-227 (374)
249 PF10300 DUF3808: Protein of u 93.7 2.7 5.8E-05 45.0 16.3 157 389-548 194-375 (468)
250 smart00299 CLH Clathrin heavy 93.5 3.3 7.1E-05 35.9 13.9 84 118-205 12-95 (140)
251 COG5107 RNA14 Pre-mRNA 3'-end 93.3 11 0.00023 38.7 31.6 447 33-519 30-535 (660)
252 KOG2610 Uncharacterized conser 93.3 0.77 1.7E-05 44.7 10.0 159 395-556 115-283 (491)
253 KOG1585 Protein required for f 93.3 5.1 0.00011 37.6 14.7 86 457-543 153-250 (308)
254 COG1729 Uncharacterized protei 93.2 0.82 1.8E-05 43.6 10.1 92 430-521 153-250 (262)
255 PF09613 HrpB1_HrpK: Bacterial 93.2 3.4 7.5E-05 36.2 13.0 91 425-518 17-109 (160)
256 KOG1941 Acetylcholine receptor 93.2 0.65 1.4E-05 45.7 9.4 46 292-337 16-63 (518)
257 COG4785 NlpI Lipoprotein NlpI, 93.0 3.5 7.6E-05 37.8 13.0 160 383-549 99-266 (297)
258 PF13512 TPR_18: Tetratricopep 93.0 3.1 6.6E-05 35.8 12.2 113 391-519 18-132 (142)
259 PF04053 Coatomer_WDAD: Coatom 92.9 1.6 3.4E-05 46.1 12.7 106 116-244 298-403 (443)
260 COG3118 Thioredoxin domain-con 92.9 9.7 0.00021 37.0 16.8 115 430-547 146-263 (304)
261 COG3118 Thioredoxin domain-con 92.8 4.7 0.0001 39.1 14.4 185 360-546 111-299 (304)
262 PF04097 Nic96: Nup93/Nic96; 92.6 16 0.00034 40.8 20.7 67 82-149 115-188 (613)
263 KOG4234 TPR repeat-containing 92.5 0.47 1E-05 42.6 6.8 89 462-550 103-198 (271)
264 KOG3941 Intermediate in Toll s 92.5 0.69 1.5E-05 44.0 8.2 99 65-163 52-173 (406)
265 KOG4555 TPR repeat-containing 92.2 1.1 2.4E-05 37.3 8.1 88 427-517 52-146 (175)
266 PF04184 ST7: ST7 protein; In 92.1 2.4 5.3E-05 44.0 12.3 98 423-520 264-380 (539)
267 PRK15331 chaperone protein Sic 92.0 4.7 0.0001 35.6 12.3 86 392-480 46-131 (165)
268 PF08631 SPO22: Meiosis protei 91.8 14 0.00031 36.4 21.5 19 495-513 255-273 (278)
269 PF10300 DUF3808: Protein of u 91.8 1.9 4.1E-05 46.2 11.9 143 403-549 177-334 (468)
270 KOG1941 Acetylcholine receptor 91.6 8.2 0.00018 38.4 14.6 162 283-444 84-272 (518)
271 COG4105 ComL DNA uptake lipopr 91.5 13 0.00028 35.4 17.7 141 385-549 36-196 (254)
272 PF02259 FAT: FAT domain; Int 91.5 18 0.00039 37.0 20.0 148 381-531 144-303 (352)
273 PF13181 TPR_8: Tetratricopept 91.4 0.28 6.1E-06 30.2 3.2 31 488-518 3-33 (34)
274 KOG2114 Vacuolar assembly/sort 91.2 29 0.00062 38.8 22.5 150 11-177 363-519 (933)
275 KOG2114 Vacuolar assembly/sort 91.1 29 0.00063 38.7 30.8 155 14-175 285-458 (933)
276 PF13170 DUF4003: Protein of u 91.0 11 0.00023 37.5 15.4 134 298-462 78-225 (297)
277 COG4105 ComL DNA uptake lipopr 90.8 15 0.00033 34.9 19.8 176 352-548 35-232 (254)
278 KOG4648 Uncharacterized conser 90.7 0.43 9.2E-06 46.5 5.0 114 424-544 103-219 (536)
279 KOG1920 IkappaB kinase complex 90.6 40 0.00086 39.4 22.6 168 288-481 857-1026(1265)
280 PF13176 TPR_7: Tetratricopept 90.5 0.37 8.1E-06 30.3 3.2 25 489-513 2-26 (36)
281 PF09205 DUF1955: Domain of un 90.5 6.8 0.00015 33.0 11.0 84 364-450 68-151 (161)
282 KOG2610 Uncharacterized conser 90.4 7.7 0.00017 38.1 13.1 153 364-521 115-284 (491)
283 KOG0890 Protein kinase of the 90.1 64 0.0014 40.8 30.0 64 486-551 1670-1733(2382)
284 PF13176 TPR_7: Tetratricopept 90.0 0.5 1.1E-05 29.7 3.4 26 522-547 1-26 (36)
285 PF08631 SPO22: Meiosis protei 89.6 23 0.00049 35.0 18.0 23 386-409 250-272 (278)
286 PRK09687 putative lyase; Provi 88.8 26 0.00056 34.6 24.4 74 249-327 204-277 (280)
287 KOG4279 Serine/threonine prote 88.5 14 0.0003 40.5 14.3 184 284-519 203-399 (1226)
288 PF04097 Nic96: Nup93/Nic96; 88.4 31 0.00067 38.5 18.2 212 153-379 116-354 (613)
289 PF00637 Clathrin: Region in C 88.4 0.053 1.2E-06 47.6 -2.7 85 118-205 12-96 (143)
290 KOG4648 Uncharacterized conser 88.2 2.1 4.6E-05 41.9 7.7 86 390-486 104-198 (536)
291 COG3629 DnrI DNA-binding trans 87.6 2.7 5.8E-05 40.9 8.1 75 353-427 154-236 (280)
292 PF00515 TPR_1: Tetratricopept 87.6 1.2 2.6E-05 27.3 4.0 27 385-411 3-29 (34)
293 PF07035 Mic1: Colon cancer-as 87.5 13 0.00028 33.2 11.7 135 98-244 14-150 (167)
294 PF13428 TPR_14: Tetratricopep 87.3 1.7 3.7E-05 28.7 4.8 27 385-411 3-29 (44)
295 PRK10941 hypothetical protein; 87.2 4.2 9E-05 39.7 9.3 61 489-549 184-244 (269)
296 PF10602 RPN7: 26S proteasome 86.8 14 0.00031 33.5 12.1 60 386-445 39-100 (177)
297 PRK09687 putative lyase; Provi 86.8 34 0.00074 33.8 25.7 74 351-429 205-278 (280)
298 PF09613 HrpB1_HrpK: Bacterial 86.6 2.6 5.6E-05 37.0 6.7 80 456-535 9-93 (160)
299 COG2976 Uncharacterized protei 85.8 28 0.0006 31.8 14.1 114 401-518 70-191 (207)
300 KOG2066 Vacuolar assembly/sort 85.8 64 0.0014 35.9 21.8 76 47-125 392-467 (846)
301 PF02259 FAT: FAT domain; Int 85.4 33 0.00071 35.1 15.8 67 485-551 145-215 (352)
302 PF06552 TOM20_plant: Plant sp 84.7 2.7 5.9E-05 37.5 6.0 45 502-546 51-99 (186)
303 TIGR02561 HrpB1_HrpK type III 84.6 5.2 0.00011 34.5 7.4 51 499-549 23-73 (153)
304 COG3629 DnrI DNA-binding trans 84.5 4.8 0.0001 39.2 8.1 60 489-548 156-215 (280)
305 PF04910 Tcf25: Transcriptiona 84.0 25 0.00054 36.1 13.6 64 485-548 99-167 (360)
306 PRK11619 lytic murein transgly 83.7 81 0.0018 35.4 31.0 115 396-513 254-373 (644)
307 KOG1586 Protein required for f 83.6 39 0.00085 31.7 13.0 61 459-519 118-187 (288)
308 COG4649 Uncharacterized protei 83.5 17 0.00038 32.2 10.2 49 160-208 144-196 (221)
309 TIGR02561 HrpB1_HrpK type III 83.2 24 0.00052 30.6 10.8 66 430-498 22-89 (153)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 83.1 3.7 7.9E-05 32.3 5.3 41 33-73 28-68 (103)
311 PF10602 RPN7: 26S proteasome 83.1 8.9 0.00019 34.8 9.0 94 353-446 37-141 (177)
312 KOG4570 Uncharacterized conser 82.9 7.1 0.00015 38.0 8.3 102 143-245 59-166 (418)
313 COG1747 Uncharacterized N-term 82.9 68 0.0015 33.9 16.1 159 180-347 67-235 (711)
314 PF07719 TPR_2: Tetratricopept 82.7 2.8 6E-05 25.5 4.0 27 385-411 3-29 (34)
315 KOG4570 Uncharacterized conser 82.3 13 0.00028 36.4 9.7 97 346-446 58-163 (418)
316 PF14853 Fis1_TPR_C: Fis1 C-te 82.2 2.5 5.4E-05 29.3 3.8 31 492-522 7-37 (53)
317 KOG3364 Membrane protein invol 81.6 16 0.00035 30.9 8.9 61 488-548 34-99 (149)
318 KOG0276 Vesicle coat complex C 81.5 28 0.0006 37.3 12.5 149 364-546 598-747 (794)
319 smart00028 TPR Tetratricopepti 81.5 3.3 7.2E-05 24.1 4.1 31 488-518 3-33 (34)
320 PF02284 COX5A: Cytochrome c o 80.5 6.7 0.00015 31.3 6.0 33 6-38 39-71 (108)
321 PF04190 DUF410: Protein of un 80.1 61 0.0013 31.6 15.7 158 160-344 2-168 (260)
322 PF13431 TPR_17: Tetratricopep 79.9 3.1 6.7E-05 25.7 3.3 23 249-271 11-33 (34)
323 TIGR02508 type_III_yscG type I 79.8 29 0.00063 27.7 9.2 61 360-423 47-107 (115)
324 PF00637 Clathrin: Region in C 79.7 1.6 3.5E-05 38.0 2.9 87 17-106 12-98 (143)
325 PRK15180 Vi polysaccharide bio 79.3 14 0.0003 38.2 9.4 119 395-518 301-423 (831)
326 PF07721 TPR_4: Tetratricopept 79.0 2.9 6.3E-05 23.9 2.8 24 521-544 2-25 (26)
327 COG2976 Uncharacterized protei 78.9 52 0.0011 30.1 12.7 90 223-312 98-189 (207)
328 PF13174 TPR_6: Tetratricopept 78.7 3 6.5E-05 25.1 3.1 26 493-518 7-32 (33)
329 PF14853 Fis1_TPR_C: Fis1 C-te 78.7 11 0.00023 26.2 6.0 49 523-598 4-52 (53)
330 KOG1464 COP9 signalosome, subu 78.4 65 0.0014 30.9 16.4 238 266-509 42-326 (440)
331 PF10345 Cohesin_load: Cohesin 78.3 1.2E+02 0.0026 34.0 34.4 163 78-241 59-252 (608)
332 PHA02875 ankyrin repeat protei 78.2 95 0.0021 32.7 17.3 18 156-173 73-90 (413)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 77.7 18 0.00038 28.7 7.4 63 398-462 22-84 (103)
334 PF13181 TPR_8: Tetratricopept 77.5 4 8.7E-05 24.8 3.5 28 521-548 2-29 (34)
335 PF02284 COX5A: Cytochrome c o 77.4 16 0.00035 29.2 7.2 60 401-462 28-87 (108)
336 KOG1308 Hsp70-interacting prot 77.2 1.4 3.1E-05 43.2 1.9 87 468-554 128-216 (377)
337 KOG0890 Protein kinase of the 77.1 2.3E+02 0.0049 36.4 28.8 129 150-288 1422-1552(2382)
338 KOG1586 Protein required for f 76.9 67 0.0015 30.3 14.5 57 463-519 163-228 (288)
339 PF13374 TPR_10: Tetratricopep 76.5 5.9 0.00013 25.4 4.3 28 384-411 3-30 (42)
340 PF13374 TPR_10: Tetratricopep 76.3 5.7 0.00012 25.4 4.2 25 489-513 5-29 (42)
341 PF11207 DUF2989: Protein of u 76.3 13 0.00029 34.0 7.6 74 466-540 119-198 (203)
342 PRK13800 putative oxidoreducta 75.9 1.7E+02 0.0038 34.5 22.6 254 272-547 625-879 (897)
343 KOG2300 Uncharacterized conser 74.9 1.2E+02 0.0025 32.0 15.7 213 165-377 299-552 (629)
344 COG4455 ImpE Protein of avirul 74.8 9.8 0.00021 35.1 6.3 63 458-520 5-69 (273)
345 COG4785 NlpI Lipoprotein NlpI, 74.3 75 0.0016 29.6 13.3 61 250-310 98-161 (297)
346 KOG1550 Extracellular protein 74.0 1.3E+02 0.0028 33.2 16.1 153 394-553 260-430 (552)
347 COG3947 Response regulator con 73.9 11 0.00024 36.3 6.7 59 490-548 283-341 (361)
348 PRK15180 Vi polysaccharide bio 73.8 56 0.0012 34.0 11.9 139 430-573 301-442 (831)
349 PF13174 TPR_6: Tetratricopept 73.4 4 8.7E-05 24.5 2.6 28 522-549 2-29 (33)
350 KOG0376 Serine-threonine phosp 73.3 6.2 0.00013 40.9 5.3 84 464-547 14-99 (476)
351 TIGR02508 type_III_yscG type I 72.9 43 0.00093 26.8 8.4 54 257-312 45-98 (115)
352 PF13170 DUF4003: Protein of u 72.7 1.1E+02 0.0023 30.6 14.6 62 399-460 78-147 (297)
353 PF11207 DUF2989: Protein of u 72.5 26 0.00056 32.2 8.5 75 196-271 123-198 (203)
354 KOG0545 Aryl-hydrocarbon recep 71.6 22 0.00048 33.5 7.8 87 462-548 186-292 (329)
355 KOG4642 Chaperone-dependent E3 71.3 12 0.00026 35.1 6.1 78 470-547 26-105 (284)
356 PF09986 DUF2225: Uncharacteri 71.2 20 0.00043 33.7 7.8 63 487-549 119-194 (214)
357 KOG4234 TPR repeat-containing 70.6 39 0.00085 30.9 8.9 63 457-519 137-201 (271)
358 KOG0276 Vesicle coat complex C 70.3 50 0.0011 35.5 10.9 100 158-276 647-746 (794)
359 PF13929 mRNA_stabil: mRNA sta 69.2 57 0.0012 31.9 10.4 108 399-506 144-258 (292)
360 KOG1550 Extracellular protein 68.4 1.9E+02 0.0042 31.9 22.4 177 367-549 343-538 (552)
361 PF07035 Mic1: Colon cancer-as 68.4 89 0.0019 28.0 15.6 35 137-171 18-52 (167)
362 PF06552 TOM20_plant: Plant sp 68.0 17 0.00037 32.6 6.1 30 400-431 52-82 (186)
363 PF13762 MNE1: Mitochondrial s 67.3 55 0.0012 28.4 8.9 88 39-126 29-128 (145)
364 KOG1464 COP9 signalosome, subu 66.8 66 0.0014 30.9 9.9 200 346-545 20-256 (440)
365 PRK13800 putative oxidoreducta 66.1 2.8E+02 0.006 32.9 25.4 45 44-88 632-676 (897)
366 PRK12798 chemotaxis protein; R 65.1 1.8E+02 0.0039 30.2 21.1 179 365-546 125-321 (421)
367 PHA02875 ankyrin repeat protei 64.9 1.6E+02 0.0035 30.9 14.4 42 235-276 116-157 (413)
368 COG4649 Uncharacterized protei 64.8 1.1E+02 0.0023 27.6 16.0 121 393-514 68-195 (221)
369 KOG0403 Neoplastic transformat 64.3 1.9E+02 0.004 30.2 17.4 57 357-413 514-573 (645)
370 PF12968 DUF3856: Domain of Un 64.0 67 0.0015 26.7 8.2 61 486-546 55-126 (144)
371 PF14561 TPR_20: Tetratricopep 63.7 16 0.00035 28.7 4.8 43 507-549 9-51 (90)
372 PF13934 ELYS: Nuclear pore co 63.6 1.4E+02 0.003 28.4 12.3 71 424-498 114-184 (226)
373 KOG3824 Huntingtin interacting 62.2 12 0.00026 36.3 4.4 46 498-543 128-173 (472)
374 KOG2422 Uncharacterized conser 62.0 1.2E+02 0.0026 32.7 11.7 54 494-547 350-405 (665)
375 PF10366 Vps39_1: Vacuolar sor 61.6 76 0.0016 26.0 8.5 27 284-310 41-67 (108)
376 PRK13342 recombination factor 61.1 2.2E+02 0.0047 30.0 14.3 48 283-330 228-278 (413)
377 PF09670 Cas_Cas02710: CRISPR- 61.0 1.1E+02 0.0025 31.7 11.8 122 392-514 140-269 (379)
378 PF09477 Type_III_YscG: Bacter 60.1 93 0.002 25.3 8.9 79 229-312 21-99 (116)
379 KOG4642 Chaperone-dependent E3 59.7 1.1E+02 0.0024 29.0 9.9 117 361-479 19-142 (284)
380 PF06957 COPI_C: Coatomer (COP 59.5 39 0.00086 35.2 7.9 41 479-519 291-333 (422)
381 PF10579 Rapsyn_N: Rapsyn N-te 59.0 24 0.00053 26.7 4.6 47 430-476 18-65 (80)
382 TIGR03504 FimV_Cterm FimV C-te 59.0 17 0.00036 24.1 3.4 27 524-550 3-29 (44)
383 KOG4507 Uncharacterized conser 58.9 25 0.00055 37.5 6.4 102 429-531 618-721 (886)
384 PF11768 DUF3312: Protein of u 58.9 86 0.0019 33.6 10.2 23 357-379 413-435 (545)
385 smart00386 HAT HAT (Half-A-TPR 58.5 15 0.00033 21.7 3.1 29 500-528 1-29 (33)
386 PRK11619 lytic murein transgly 58.4 3.1E+02 0.0068 30.9 37.5 242 295-554 254-510 (644)
387 KOG2396 HAT (Half-A-TPR) repea 57.8 2.6E+02 0.0056 29.8 29.3 433 11-487 104-565 (568)
388 KOG1585 Protein required for f 56.5 1.9E+02 0.004 27.7 17.4 144 354-510 93-251 (308)
389 PF09477 Type_III_YscG: Bacter 56.3 1.1E+02 0.0024 24.9 8.2 81 25-108 19-99 (116)
390 KOG0551 Hsp90 co-chaperone CNS 56.0 68 0.0015 31.9 8.3 90 456-545 83-178 (390)
391 KOG3807 Predicted membrane pro 55.2 1.1E+02 0.0023 30.4 9.4 115 389-524 281-400 (556)
392 KOG1498 26S proteasome regulat 55.2 2.5E+02 0.0055 28.8 14.2 110 459-572 136-264 (439)
393 PF13934 ELYS: Nuclear pore co 54.6 1.9E+02 0.0041 27.5 11.2 114 365-487 91-205 (226)
394 PF14863 Alkyl_sulf_dimr: Alky 54.4 44 0.00096 28.9 6.2 66 470-538 57-122 (141)
395 COG4976 Predicted methyltransf 54.3 20 0.00044 33.4 4.3 57 463-519 4-62 (287)
396 TIGR03504 FimV_Cterm FimV C-te 54.0 31 0.00068 22.8 4.1 25 389-413 5-29 (44)
397 cd08819 CARD_MDA5_2 Caspase ac 54.0 81 0.0017 24.6 6.8 38 263-301 48-85 (88)
398 COG1747 Uncharacterized N-term 53.9 3.1E+02 0.0066 29.4 21.3 162 351-519 65-238 (711)
399 KOG2063 Vacuolar assembly/sort 53.6 2.5E+02 0.0055 32.5 13.5 56 51-106 311-374 (877)
400 cd08819 CARD_MDA5_2 Caspase ac 52.6 88 0.0019 24.4 6.8 66 31-98 21-86 (88)
401 KOG1258 mRNA processing protei 52.2 3.5E+02 0.0075 29.5 28.5 128 48-176 46-179 (577)
402 KOG4077 Cytochrome c oxidase, 52.1 44 0.00095 28.0 5.4 34 5-38 77-110 (149)
403 KOG3824 Huntingtin interacting 51.8 48 0.001 32.4 6.5 59 466-524 128-188 (472)
404 PF07720 TPR_3: Tetratricopept 51.7 39 0.00084 21.2 4.1 30 489-518 4-35 (36)
405 PRK10941 hypothetical protein; 51.5 96 0.0021 30.4 8.8 66 458-523 185-252 (269)
406 KOG4279 Serine/threonine prote 51.3 71 0.0015 35.3 8.3 28 652-679 489-516 (1226)
407 COG0790 FOG: TPR repeat, SEL1 51.3 2.5E+02 0.0055 27.7 16.5 76 472-550 173-267 (292)
408 COG2909 MalT ATP-dependent tra 51.1 4.4E+02 0.0095 30.4 23.1 215 262-480 426-685 (894)
409 PF11846 DUF3366: Domain of un 50.8 56 0.0012 30.1 7.0 37 481-517 139-175 (193)
410 PF12862 Apc5: Anaphase-promot 50.2 42 0.00092 26.6 5.2 53 496-548 8-69 (94)
411 PF11846 DUF3366: Domain of un 50.0 51 0.0011 30.4 6.6 31 450-480 140-170 (193)
412 PF10579 Rapsyn_N: Rapsyn N-te 47.7 55 0.0012 24.9 5.0 46 395-440 18-65 (80)
413 PRK09169 hypothetical protein; 47.0 7.8E+02 0.017 32.1 40.5 468 79-546 123-692 (2316)
414 PF10366 Vps39_1: Vacuolar sor 47.0 1.1E+02 0.0025 25.0 7.3 27 80-106 41-67 (108)
415 cd00280 TRFH Telomeric Repeat 47.0 1.4E+02 0.0029 27.2 8.0 29 492-521 117-145 (200)
416 KOG0292 Vesicle coat complex C 45.2 40 0.00086 38.0 5.5 96 396-515 606-701 (1202)
417 PF07163 Pex26: Pex26 protein; 45.1 2.4E+02 0.0052 27.6 9.9 88 390-480 90-184 (309)
418 PF13762 MNE1: Mitochondrial s 44.6 2.1E+02 0.0046 24.9 9.3 49 281-329 78-127 (145)
419 PF07575 Nucleopor_Nup85: Nup8 44.3 4.8E+02 0.01 28.9 20.0 56 48-104 114-174 (566)
420 PF04910 Tcf25: Transcriptiona 43.8 3.8E+02 0.0083 27.6 16.1 88 426-518 111-225 (360)
421 PF11663 Toxin_YhaV: Toxin wit 42.1 29 0.00063 29.4 3.1 31 91-123 108-138 (140)
422 PRK13342 recombination factor 42.0 4.4E+02 0.0095 27.8 15.7 48 385-432 229-279 (413)
423 COG4941 Predicted RNA polymera 40.7 4E+02 0.0086 26.9 11.8 129 380-521 261-400 (415)
424 PRK09169 hypothetical protein; 40.4 9.7E+02 0.021 31.3 47.4 537 12-548 122-778 (2316)
425 KOG4077 Cytochrome c oxidase, 40.0 1.7E+02 0.0037 24.7 7.0 59 401-461 67-125 (149)
426 PRK10564 maltose regulon perip 39.4 47 0.001 32.6 4.5 40 181-220 259-298 (303)
427 COG3947 Response regulator con 39.3 72 0.0016 31.1 5.6 57 49-105 281-340 (361)
428 PF14561 TPR_20: Tetratricopep 39.2 1.9E+02 0.0041 22.7 8.3 62 485-546 21-85 (90)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 38.8 1.9E+02 0.0041 24.5 7.7 42 504-545 81-124 (126)
430 PF11663 Toxin_YhaV: Toxin wit 38.8 42 0.00091 28.5 3.5 34 189-224 105-138 (140)
431 PF10345 Cohesin_load: Cohesin 38.2 6.2E+02 0.013 28.4 33.1 176 30-206 39-252 (608)
432 COG4976 Predicted methyltransf 37.8 64 0.0014 30.3 4.8 56 496-551 5-60 (287)
433 PF07163 Pex26: Pex26 protein; 37.8 2.7E+02 0.006 27.2 9.1 21 185-205 89-109 (309)
434 PF04190 DUF410: Protein of un 37.7 3.9E+02 0.0086 26.0 16.4 51 146-196 88-138 (260)
435 PF12862 Apc5: Anaphase-promot 37.6 95 0.0021 24.5 5.4 24 492-515 47-70 (94)
436 KOG0991 Replication factor C, 36.4 3.9E+02 0.0084 25.5 9.7 95 327-424 169-279 (333)
437 cd08326 CARD_CASP9 Caspase act 35.9 1.3E+02 0.0028 23.3 5.7 63 31-97 18-80 (84)
438 PF14689 SPOB_a: Sensor_kinase 34.7 90 0.002 22.5 4.4 28 419-446 24-51 (62)
439 COG2912 Uncharacterized conser 34.4 1.1E+02 0.0023 29.8 5.9 58 491-548 186-243 (269)
440 PF10155 DUF2363: Uncharacteri 34.3 2.9E+02 0.0063 23.4 10.3 111 63-175 5-125 (126)
441 PHA03100 ankyrin repeat protei 34.2 6.1E+02 0.013 27.1 14.6 20 258-277 254-273 (480)
442 PF12069 DUF3549: Protein of u 33.2 5.3E+02 0.012 26.2 11.9 86 358-446 172-258 (340)
443 PF11848 DUF3368: Domain of un 33.1 1.4E+02 0.003 20.2 4.8 33 190-222 13-45 (48)
444 PF15161 Neuropep_like: Neurop 33.0 17 0.00037 24.9 0.3 16 649-665 11-26 (65)
445 PRK10564 maltose regulon perip 32.8 84 0.0018 31.0 5.1 41 385-425 259-299 (303)
446 PF14689 SPOB_a: Sensor_kinase 32.1 64 0.0014 23.3 3.2 28 180-207 24-51 (62)
447 cd08326 CARD_CASP9 Caspase act 32.1 2E+02 0.0043 22.3 6.1 40 262-301 41-80 (84)
448 COG4455 ImpE Protein of avirul 32.0 4.4E+02 0.0096 24.9 12.6 123 386-520 4-139 (273)
449 PF11838 ERAP1_C: ERAP1-like C 31.1 5.5E+02 0.012 25.7 17.6 84 432-515 144-230 (324)
450 PF10475 DUF2450: Protein of u 30.4 2.4E+02 0.0052 28.0 8.2 52 257-310 104-155 (291)
451 PF08225 Antimicrobial19: Pseu 30.4 26 0.00057 18.6 0.7 12 655-666 10-21 (23)
452 TIGR01503 MthylAspMut_E methyl 30.0 2.5E+02 0.0055 29.6 8.1 122 332-460 69-217 (480)
453 COG3043 NapB Nitrate reductase 29.7 34 0.00075 29.2 1.7 18 645-662 80-97 (155)
454 KOG1811 Predicted Zn2+-binding 29.6 4.5E+02 0.0097 28.6 9.9 74 455-529 557-631 (1141)
455 PF11848 DUF3368: Domain of un 28.7 1.9E+02 0.0041 19.5 5.2 32 394-425 13-44 (48)
456 KOG2659 LisH motif-containing 28.6 3.9E+02 0.0085 25.3 8.4 92 385-479 28-128 (228)
457 PF04034 DUF367: Domain of unk 28.3 3.7E+02 0.008 22.8 7.7 59 454-512 66-125 (127)
458 PF13929 mRNA_stabil: mRNA sta 27.2 6.2E+02 0.013 25.0 18.5 57 249-305 200-261 (292)
459 PF11525 CopK: Copper resistan 27.1 23 0.0005 25.7 0.2 21 670-690 8-28 (73)
460 COG5108 RPO41 Mitochondrial DN 27.1 3E+02 0.0065 30.4 8.2 47 388-434 33-81 (1117)
461 PF07575 Nucleopor_Nup85: Nup8 26.8 3.5E+02 0.0076 30.0 9.5 71 199-273 390-460 (566)
462 cd08332 CARD_CASP2 Caspase act 26.8 2.6E+02 0.0057 22.0 6.1 60 31-94 22-81 (90)
463 PF12796 Ank_2: Ankyrin repeat 26.5 1.9E+02 0.0041 22.1 5.5 17 56-72 32-48 (89)
464 KOG0686 COP9 signalosome, subu 25.6 7.8E+02 0.017 25.6 12.9 58 354-411 152-215 (466)
465 KOG0687 26S proteasome regulat 25.1 7.2E+02 0.016 25.0 10.2 24 456-479 106-129 (393)
466 PLN03192 Voltage-dependent pot 25.0 7.2E+02 0.016 29.1 12.1 58 256-318 624-684 (823)
467 KOG0376 Serine-threonine phosp 25.0 1.4E+02 0.0031 31.4 5.4 96 362-462 14-113 (476)
468 KOG1524 WD40 repeat-containing 24.9 3.5E+02 0.0076 29.0 8.0 88 454-544 573-668 (737)
469 PRK11586 napB nitrate reductas 24.7 43 0.00094 28.6 1.4 21 641-663 72-92 (149)
470 KOG2471 TPR repeat-containing 24.7 5.7E+02 0.012 27.3 9.4 60 494-556 214-273 (696)
471 TIGR02710 CRISPR-associated pr 24.5 8.1E+02 0.017 25.4 11.5 29 392-420 139-167 (380)
472 KOG2758 Translation initiation 24.4 7.3E+02 0.016 24.9 12.8 162 339-514 22-195 (432)
473 KOG1498 26S proteasome regulat 24.3 7.5E+02 0.016 25.6 10.0 99 356-480 135-238 (439)
474 cd00280 TRFH Telomeric Repeat 24.2 3.8E+02 0.0082 24.5 7.1 30 461-490 118-147 (200)
475 KOG1308 Hsp70-interacting prot 24.0 84 0.0018 31.5 3.4 116 429-548 125-243 (377)
476 COG5191 Uncharacterized conser 23.8 1.5E+02 0.0032 29.4 4.9 61 466-526 119-182 (435)
477 PF12796 Ank_2: Ankyrin repeat 23.8 2.8E+02 0.0061 21.1 6.1 82 56-148 3-87 (89)
478 PF15469 Sec5: Exocyst complex 23.6 5.5E+02 0.012 23.2 11.9 87 423-525 91-178 (182)
479 COG2178 Predicted RNA-binding 23.4 3.9E+02 0.0085 24.6 7.1 49 363-411 40-97 (204)
480 KOG4507 Uncharacterized conser 23.1 3.5E+02 0.0076 29.4 7.8 133 414-549 567-705 (886)
481 COG5108 RPO41 Mitochondrial DN 23.1 4.6E+02 0.01 29.0 8.7 26 219-244 33-58 (1117)
482 PRK14962 DNA polymerase III su 22.7 9.3E+02 0.02 26.0 11.3 148 9-157 175-328 (472)
483 PF14669 Asp_Glu_race_2: Putat 22.5 6.2E+02 0.013 23.3 13.3 25 219-243 137-161 (233)
484 PF09986 DUF2225: Uncharacteri 22.4 6.5E+02 0.014 23.6 10.1 19 496-514 175-193 (214)
485 PF02607 B12-binding_2: B12 bi 22.0 1.7E+02 0.0036 22.0 4.2 41 292-332 11-51 (79)
486 TIGR02270 conserved hypothetic 22.0 9.4E+02 0.02 25.3 22.9 233 186-444 45-278 (410)
487 KOG0545 Aryl-hydrocarbon recep 22.0 7.2E+02 0.016 24.0 10.5 59 461-519 237-297 (329)
488 KOG0292 Vesicle coat complex C 21.7 1.3E+03 0.028 26.9 12.9 131 360-514 651-781 (1202)
489 PRK11639 zinc uptake transcrip 21.7 3.4E+02 0.0073 24.4 6.7 46 183-228 29-74 (169)
490 PF11817 Foie-gras_1: Foie gra 21.6 5.3E+02 0.012 24.8 8.6 53 389-441 184-241 (247)
491 COG0735 Fur Fe2+/Zn2+ uptake r 21.6 3.9E+02 0.0084 23.3 6.9 35 183-217 24-58 (145)
492 KOG2581 26S proteasome regulat 21.4 9.4E+02 0.02 25.1 15.8 123 396-518 139-279 (493)
493 TIGR02710 CRISPR-associated pr 21.3 9.3E+02 0.02 25.0 11.6 17 363-379 141-157 (380)
494 KOG4334 Uncharacterized conser 21.2 76 0.0016 33.0 2.6 145 6-161 409-573 (650)
495 PRK11509 hydrogenase-1 operon 21.0 2.8E+02 0.0062 23.7 5.6 84 565-670 36-126 (132)
496 KOG4814 Uncharacterized conser 21.0 3.6E+02 0.0078 29.7 7.4 53 495-547 403-455 (872)
497 PF10255 Paf67: RNA polymerase 20.8 5.6E+02 0.012 26.8 8.7 54 357-410 127-191 (404)
498 PF15015 NYD-SP12_N: Spermatog 20.7 2.1E+02 0.0045 29.7 5.4 20 459-478 233-252 (569)
499 KOG3507 DNA-directed RNA polym 20.6 35 0.00075 23.9 0.1 13 651-663 20-32 (62)
500 PF02847 MA3: MA3 domain; Int 20.6 2.1E+02 0.0046 23.3 4.9 24 256-279 7-30 (113)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-136 Score=1174.71 Aligned_cols=677 Identities=37% Similarity=0.681 Sum_probs=668.8
Q ss_pred CCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHH
Q 005481 6 FSLVSERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALM 85 (694)
Q Consensus 6 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 85 (694)
.|+.||.+||+++|++|++.+++..+.++|..+.+.|+.||+.++|+||.+|+++|++++|.++|++|++||+++||+||
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li 260 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005481 86 CGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRIN 165 (694)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~ 165 (694)
.+|+++|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCC
Q 005481 166 EAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGF 245 (694)
Q Consensus 166 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 245 (694)
+|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+
T Consensus 341 ~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHH
Q 005481 246 PYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMG 325 (694)
Q Consensus 246 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 325 (694)
. ++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.
T Consensus 421 ~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 421 I--SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred C--cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 8 99999999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 005481 326 VFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGL 405 (694)
Q Consensus 326 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 405 (694)
+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 005481 406 FRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPS 485 (694)
Q Consensus 406 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 485 (694)
|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 005481 486 IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVAGRSWVEVDKE 565 (694)
Q Consensus 486 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 565 (694)
..+|++|+.+|+.+|+.+.|+.+++++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||+++++
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHHHHHHHhcCcccCccccccccchhhhhhcccccchHHHHhhhhhhcCCCCCCCCcE
Q 005481 566 IHFFYGGDDTHPLTEKIHQVLMEMEKRMKEELGFVYGVKYALHDIQEESKEESLRVHSEKLAIGLALVRGGLNEQPGKVI 645 (694)
Q Consensus 566 ~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~ 645 (694)
+|.|.++|.+||+.++||.+|++|..+|+ +.||+||+..++ ++++++|+..+++||||||+|||||+|| ||.||
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~-~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~----~~~~i 810 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMK-ASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTV----PGMPI 810 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHH-hCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCC----CCCeE
Confidence 99999999999999999999999999999 999999999988 4588999999999999999999999999 99999
Q ss_pred EEEeeccccCCchhhhhhhhhccCceEEEecCCccccccCccccCCC
Q 005481 646 RVFKNLRVCGDCHEFIKGLSKILKLVFVVRDATRFHRFEGGVCSCGD 692 (694)
Q Consensus 646 ~~~knl~~c~~~h~~~k~~s~~~~~~i~~~d~~~~h~f~~g~csc~~ 692 (694)
||+||||||+|||+++|||||+++|+|||||.+|||||+||+|||+|
T Consensus 811 ~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 811 WVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-126 Score=1066.53 Aligned_cols=613 Identities=36% Similarity=0.647 Sum_probs=605.4
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHhhhCC-CCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 005481 75 ERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSS-VKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNS 153 (694)
Q Consensus 75 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 153 (694)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHH
Q 005481 154 IIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGG 233 (694)
Q Consensus 154 ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 233 (694)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 005481 234 TQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSL 313 (694)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 313 (694)
.++|..+.+.|+. ++..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCC--ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHH
Q 005481 314 QVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGY 393 (694)
Q Consensus 314 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 393 (694)
.||..||++++.+|++.|.++.|.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHH
Q 005481 394 GKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEA 473 (694)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 473 (694)
+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCcc
Q 005481 474 KNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKK 553 (694)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 553 (694)
.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|..|+++|++.|+|++|.++++.|+++|++|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHhcCcccCccccccccchhhhhhcccccchHHHHhhhhh
Q 005481 554 VAGRSWVEVDKEIHFFYGGDDTHPLTEKIHQVLMEMEKRMKEELGFVYGVKYALHDIQEESKEESLRVHSEKLAIGLALV 633 (694)
Q Consensus 554 ~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~ 633 (694)
.||+||+++++++|.|.+||..||+..+|+.+|++|..+|+ +.||+||+.+++|++++++|+..+++||||||+|||||
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~-~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS-EYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHH-HcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcEEEEeeccccCCchhhhhhhhhccCceEEEecCCccccccCccccCCCCC
Q 005481 634 RGGLNEQPGKVIRVFKNLRVCGDCHEFIKGLSKILKLVFVVRDATRFHRFEGGVCSCGDYW 694 (694)
Q Consensus 634 ~~~~~~~~~~~~~~~knl~~c~~~h~~~k~~s~~~~~~i~~~d~~~~h~f~~g~csc~~~w 694 (694)
++| ||.||||+||||||+|||+|+||||++++|+|||||.+|||||+||+|||+|||
T Consensus 641 ~~~----~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTS----EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCC----CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-83 Score=732.42 Aligned_cols=655 Identities=25% Similarity=0.403 Sum_probs=580.3
Q ss_pred CCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHH
Q 005481 6 FSLVSERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALM 85 (694)
Q Consensus 6 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 85 (694)
.|+.|+..+|..++++|.+.+.++.|.++|+.+.+.|..+++.++|+|+++|+++|+++.|.++|++|++||+++||++|
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005481 86 CGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRIN 165 (694)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~ 165 (694)
.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..++++|..+++.|+.||..++|+|+.+|+++|+++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCC
Q 005481 166 EAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGF 245 (694)
Q Consensus 166 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 245 (694)
+|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||++++.+|++.|+++.|.++|..+.+.|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHH
Q 005481 246 PYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMG 325 (694)
Q Consensus 246 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 325 (694)
. ++..++|+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 320 ~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 320 A--VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred c--cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 005481 326 VFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGL 405 (694)
Q Consensus 326 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 405 (694)
+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 005481 406 FRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPS 485 (694)
Q Consensus 406 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 485 (694)
|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+ .|+.|+..++++|+++|+++|++++|.++|+++ .||
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d 553 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKD 553 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCC
Confidence 999986 6999999999999999999999999999999998 899999999999999999999999999999998 899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcC--CCCCcchHHHHHhHHHhcCCchHHHHHHHHHH-hCCCccCCceeEEEE
Q 005481 486 IAIWQTLLSACRVHGDLELGREVGEILLRL--DGDNPVNYVMMSNIHADAGSWNECERLRKLAR-SKGLKKVAGRSWVEV 562 (694)
Q Consensus 486 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~ 562 (694)
..+|++++.+|.++|+.++|.++|++|.+. .|+ ..+|..++.+|.+.|++++|.++++.|. +.|+.+........
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l- 631 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV- 631 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH-
Confidence 999999999999999999999999999874 465 6889999999999999999999999998 66776543110000
Q ss_pred CCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHhcCcccCccccccccchhhhhhcccccchHHH-HhhhhhhcCCCCCC
Q 005481 563 DKEIHFFYGGDDTHPLTEKIHQVLMEMEKRMKEELGFVYGVKYALHDIQEESKEESLRVHSEKLA-IGLALVRGGLNEQP 641 (694)
Q Consensus 563 ~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la-~~~~~~~~~~~~~~ 641 (694)
+..+. ..+. +++..+.++ +.+..||...+-.-+..+...+.+.. -|+.| ..+.+.|.. +
T Consensus 632 ---v~~l~----r~G~-------~~eA~~~~~-~m~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~----~ 691 (857)
T PLN03077 632 ---VDLLG----RAGK-------LTEAYNFIN-KMPITPDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNS----V 691 (857)
T ss_pred ---HHHHH----hCCC-------HHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCC----c
Confidence 00000 0111 123333444 55678887655444444432211100 12222 123343333 4
Q ss_pred CCcEEEEeeccccCCchhhhhhhhhccCce--------EEEecCCccccccCcccc
Q 005481 642 GKVIRVFKNLRVCGDCHEFIKGLSKILKLV--------FVVRDATRFHRFEGGVCS 689 (694)
Q Consensus 642 ~~~~~~~knl~~c~~~h~~~k~~s~~~~~~--------i~~~d~~~~h~f~~g~cs 689 (694)
+..+.+..-....|+..++.+....|-.+. .|.- .+..|-|..|--|
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKVHAFLTDDES 746 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEEEEEecCCCC
Confidence 444322333467899999999887665443 2322 3578888776544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.3e-67 Score=588.28 Aligned_cols=504 Identities=16% Similarity=0.228 Sum_probs=455.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCccc-----HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHH
Q 005481 43 FSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVS-----WTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLS 117 (694)
Q Consensus 43 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 117 (694)
..++...|..+++.|+++|++++|+++|++|++++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 35677788888899999999999999999998776554 45566778999999999999999874 8999999
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcccHHHHHHHHHhcC
Q 005481 118 TNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMP----AKSLITWNAMIAGYVLAG 193 (694)
Q Consensus 118 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 193 (694)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999997 478999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHH--hCCCCCcchhhHHHHHHHHHHcCCHHHHH
Q 005481 194 YSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLIT--SGFPYSVKTVIAGSLVDFYVKCGCLVEAR 271 (694)
Q Consensus 194 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~~~li~~y~~~g~~~~A~ 271 (694)
++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+. ++..+|++|+.+|+++|++++|.
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~--PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID--PDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999987 4566 88999999999999999999999
Q ss_pred HHHhhcCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcC
Q 005481 272 RVFDLIEQ----KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVP 347 (694)
Q Consensus 272 ~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 347 (694)
++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999975 46689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhhcCCHHHHHHHHccCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005481 348 SGLDTSVSNSIVDMYLKCGLIDEATELFNEMP----VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLA 423 (694)
Q Consensus 348 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 423 (694)
+.|+..+|++||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999995 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH----hc-------------------CChHHHHHHHHhC
Q 005481 424 VLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLG----RA-------------------GRLDEAKNLIESM 480 (694)
Q Consensus 424 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~-------------------g~~~~A~~~~~~~ 480 (694)
++.+|.+.|++++|.++|+.|.+ .|+.||..+|++|++++. ++ +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99999999999999999999988 899999999999997643 22 2346899999999
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-CCCCCcchHHHHHhHHHhcCCc-hHHHHHHHHHHhCCCccCC
Q 005481 481 ---PVKPSIAIWQTLLSACRVHGDLELGREVGEILLR-LDGDNPVNYVMMSNIHADAGSW-NECERLRKLARSKGLKKVA 555 (694)
Q Consensus 481 ---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~~~~ 555 (694)
++.||..+|++++.++...+..+.+..+++.+.. -.+.+..+|..|++.+ |++ ++|..++++|.+.|+.+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 7999999999999877788888888888877642 2345678999999987 433 6899999999999998765
Q ss_pred c
Q 005481 556 G 556 (694)
Q Consensus 556 ~ 556 (694)
.
T Consensus 916 ~ 916 (1060)
T PLN03218 916 S 916 (1060)
T ss_pred c
Confidence 4
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.6e-68 Score=592.75 Aligned_cols=441 Identities=28% Similarity=0.460 Sum_probs=418.9
Q ss_pred CCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHH
Q 005481 6 FSLVSERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALM 85 (694)
Q Consensus 6 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 85 (694)
.+..||..||+++|.+|++.++++.|.++|..|.+.|+.||+.++|.|+++|+++|++++|+++|++|++||+++||++|
T Consensus 117 ~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 117 CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHH
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005481 86 CGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRIN 165 (694)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~ 165 (694)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.++++|..+.+.|+.||..++|+|+++|+++|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCC
Q 005481 166 EAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGF 245 (694)
Q Consensus 166 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 245 (694)
+|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|..+.+.|+
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHH
Q 005481 246 PYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMG 325 (694)
Q Consensus 246 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 325 (694)
. ++..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.
T Consensus 357 ~--~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 357 P--LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred C--CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccHHHHHHHHHHHHh-cCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC-CCChhhHHHHHHHHHhcCCHHHHH
Q 005481 326 VFADFALVEQGKQIHAYAAK-VPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP-VKNVVTWTVIITGYGKHGLAKEAV 403 (694)
Q Consensus 326 ~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 403 (694)
+|++.|.+++|.++|..|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+ .|+..+|++|+.+|..+|+.+.|.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999976 6999999999999999999999999999999887 578888888888888888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCC
Q 005481 404 GLFRKMLLDDVEPD-GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMK 451 (694)
Q Consensus 404 ~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 451 (694)
.+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+ .|+.
T Consensus 515 ~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~ 560 (697)
T PLN03081 515 LAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLS 560 (697)
T ss_pred HHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCc
Confidence 88888764 5564 45788888888888888888888888876 5554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-64 Score=564.77 Aligned_cols=461 Identities=18% Similarity=0.257 Sum_probs=421.2
Q ss_pred CChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccC----CCCcccHHHHH
Q 005481 10 SERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKML----ERNVVSWTALM 85 (694)
Q Consensus 10 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 85 (694)
||..||+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||.||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 58999999999
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCC
Q 005481 86 CGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMK--SGFEWNPVVGNSIIDMYSKCGR 163 (694)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~y~~~g~ 163 (694)
.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++|+.+|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred hHHHHHHHccCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHH
Q 005481 164 INEAARMFDVMPA----KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGF 239 (694)
Q Consensus 164 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 239 (694)
+++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999976 466899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCcc
Q 005481 240 LITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIE----QKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQV 315 (694)
Q Consensus 240 ~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 315 (694)
|.+.|+. ++..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.|
T Consensus 675 M~k~G~~--pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 675 ARKQGIK--LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHcCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999998 999999999999999999999999999995 5899999999999999999999999999999999999
Q ss_pred CccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhh----hcCCHHHHHHHHccCCCCChhhHHHHHH
Q 005481 316 DGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYL----KCGLIDEATELFNEMPVKNVVTWTVIIT 391 (694)
Q Consensus 316 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li~ 391 (694)
|..||++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. +++...++...|+.+...+...|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w----- 827 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW----- 827 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch-----
Confidence 999999999999999999999999999999999999999999998743 34444444444444333343444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChH
Q 005481 392 GYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLD 471 (694)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 471 (694)
.++|+.+|++|++.|+.||..||+.++.++...+..+.+..+++.|.. .+..|+..+|++||+++++. .+
T Consensus 828 -------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~ 897 (1060)
T PLN03218 828 -------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DP 897 (1060)
T ss_pred -------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hH
Confidence 456999999999999999999999999877788888888888888765 56778889999999988543 46
Q ss_pred HHHHHHHhC---CCCCCHH
Q 005481 472 EAKNLIESM---PVKPSIA 487 (694)
Q Consensus 472 ~A~~~~~~~---~~~p~~~ 487 (694)
+|..++++| ++.|+..
T Consensus 898 ~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 898 RAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHcCCCCCcc
Confidence 899999998 6777754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-30 Score=306.63 Aligned_cols=527 Identities=13% Similarity=0.061 Sum_probs=377.2
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHH
Q 005481 11 ERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTALMCG 87 (694)
Q Consensus 11 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 87 (694)
+...+..+...+...|+++.|.+.+..+.+.. +.+...++.+...|.+.|++++|.+.|+++.+ .+...|..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456666677778888888888888887765 45677788888888888888888888887743 244567777788
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 005481 88 FLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEA 167 (694)
Q Consensus 88 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A 167 (694)
+...|++++|++.|+.+.+.... +......++..+.+.|+++.|..++..+.+.. +++..++..+...|...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888888764322 23344556667777888888888888777643 45667777788888888888888
Q ss_pred HHHHccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhC
Q 005481 168 ARMFDVMPA---KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSG 244 (694)
Q Consensus 168 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 244 (694)
...|+++.+ .+...+..+...+...|++++|.+.|+++...+. .+..++..+...+...|+.+++...+..+.+.+
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888877643 3455677777777888888888888888776532 345567777777777888888888888777765
Q ss_pred CCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchH
Q 005481 245 FPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLS 321 (694)
Q Consensus 245 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 321 (694)
+ .+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+.
T Consensus 564 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 639 (899)
T TIGR02917 564 P---QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALL 639 (899)
T ss_pred c---cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 4 4556667777888888888888888877653 355677778888888888888888888777642 22445566
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCC
Q 005481 322 SMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHGL 398 (694)
Q Consensus 322 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 398 (694)
.+...+...|+++.|..++..+.+... .+...+..++..+.+.|++++|.++++.+.. .+...|..+...+...|+
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 666777777888888888777776542 2456677777777777888888777777752 355567777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005481 399 AKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIE 478 (694)
Q Consensus 399 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 478 (694)
+++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+
T Consensus 719 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 719 YPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred HHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 77787777777764 355566666777777777777777777777662 23346667777777777777777777777
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCC
Q 005481 479 SM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGL 551 (694)
Q Consensus 479 ~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 551 (694)
++ ..+++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 795 ~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 795 TVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 76 223346667777777777777 6677777777777777777777777777777777777777777766543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-30 Score=303.04 Aligned_cols=519 Identities=10% Similarity=-0.012 Sum_probs=427.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCC
Q 005481 17 DSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTALMCGFLQNGN 93 (694)
Q Consensus 17 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 93 (694)
.+-..+...|+++.|...+..+.+.. +.+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Confidence 33445667899999999999888865 45667778888899999999999999988754 345678888899999999
Q ss_pred hHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHcc
Q 005481 94 AKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDV 173 (694)
Q Consensus 94 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~ 173 (694)
+++|.++|+++.+.. +.+...+..+...+...|+.+.|...+..+.+... ........++..|.+.|++++|..+++.
T Consensus 379 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 379 FEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999987653 22455667777778888999999999999887652 2345566778889999999999999988
Q ss_pred CCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcc
Q 005481 174 MPA---KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVK 250 (694)
Q Consensus 174 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 250 (694)
+.. .+..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..+ .+
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~ 532 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP---KN 532 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---Cc
Confidence 864 356788999999999999999999999988753 23345677777888889999999999999988775 56
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHH
Q 005481 251 TVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVF 327 (694)
Q Consensus 251 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 327 (694)
..++..+...|.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++++.... +.+..++..+...+
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 77888899999999999999999988753 355678888899999999999999999987653 34566788888899
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHH
Q 005481 328 ADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVG 404 (694)
Q Consensus 328 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 404 (694)
...|+++.|...+..+.+... .+...+..+...|.+.|++++|..+|+++. ..+..+|..++..+...|++++|..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998887653 356677888999999999999999998876 3467789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 005481 405 LFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM--PV 482 (694)
Q Consensus 405 ~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 482 (694)
+++.+...+ +++...+..+...+...|++++|.+.|+.+.. ..|+...+..++.++.+.|++++|.+.++++ ..
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999998864 44567778888888999999999999999877 4566678888999999999999999998887 33
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 483 KPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 483 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+.+..++..+...|...|+.++|...++++++..|+++..+..++.+|...|+ .+|..+++.+.+.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 34577788888889999999999999999999999999999999999999999 8899999888765
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=1.5e-33 Score=232.62 Aligned_cols=106 Identities=57% Similarity=0.904 Sum_probs=96.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHhcCcccCccccccccchhhh--------hhcccccchHHH
Q 005481 556 GRSWVEVDKEIHFFYGGDDTHPLTEKIHQVLMEMEKRMKEELGFVYGVKYALHDIQEESK--------EESLRVHSEKLA 627 (694)
Q Consensus 556 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la 627 (694)
|+||+++ |.|.+||.+||+. ++..++. ..||.|++..+.|+++++++ +..+++||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMK-EEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHH-HcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHH
Confidence 7899987 9999999999987 4456666 88999999999998888766 568899999999
Q ss_pred HhhhhhhcCCCCCCCCcEEEEeec-cccCCchhhhhhhhhccCceEEEecCCcccccc
Q 005481 628 IGLALVRGGLNEQPGKVIRVFKNL-RVCGDCHEFIKGLSKILKLVFVVRDATRFHRFE 684 (694)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~knl-~~c~~~h~~~k~~s~~~~~~i~~~d~~~~h~f~ 684 (694)
+||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 69 iafgli~~----------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT----------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce----------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999875 799999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6e-22 Score=233.70 Aligned_cols=520 Identities=12% Similarity=0.053 Sum_probs=283.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC--CCcc-cH----------
Q 005481 15 LADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE--RNVV-SW---------- 81 (694)
Q Consensus 15 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~---------- 81 (694)
+..-.+.+-..++.+.|.+.+..+.... +.++.++..+...+.+.|+.++|.+.+++..+ |+.. .+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 3444455556667777777777666553 44566666677777777777777777777643 2211 11
Q ss_pred ------HHHHHHHHhCCChHHHHHHHHHhhhCCCCCCcee-HHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005481 82 ------TALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFT-LSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSI 154 (694)
Q Consensus 82 ------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 154 (694)
..+...+.+.|++++|++.|+.+.+.. +|+... ...........++.++|...++.+++.. +.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 222335666777777777777776542 222211 1111111223466777777777777663 3345566666
Q ss_pred HHHHHhcCChHHHHHHHccCCCCCc------cc-----------------H-----------------------------
Q 005481 155 IDMYSKCGRINEAARMFDVMPAKSL------IT-----------------W----------------------------- 182 (694)
Q Consensus 155 l~~y~~~g~~~~A~~~f~~~~~~~~------~~-----------------~----------------------------- 182 (694)
...+...|+.++|+..|+++..... .. +
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 6777777777777777665432100 00 0
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhH--
Q 005481 183 -----NAMIAGYVLAGYSDKGLLLFRKMQEHGEIP-DEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIA-- 254 (694)
Q Consensus 183 -----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 254 (694)
......+...|++++|+..|++..+.. | +...+..+..++.+.|++++|...++.+++..+.. .....+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~-~~~~~~~~ 344 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS-SNRDKWES 344 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-cchhHHHH
Confidence 011233455677777777777776642 3 44566666667777777777777777777655431 111111
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCc-cch
Q 005481 255 ----------GSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDG-FVL 320 (694)
Q Consensus 255 ----------~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~ 320 (694)
..+...+.+.|++++|...|+++.. .+...+..+...+...|++++|++.|++..+. .|+. ..+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 1223455667777777777776543 23455666667777777777777777777653 2332 222
Q ss_pred HHHHHH------------------------------------------HhhhccHHHHHHHHHHHHhcCCCCCchHHHHH
Q 005481 321 SSMMGV------------------------------------------FADFALVEQGKQIHAYAAKVPSGLDTSVSNSI 358 (694)
Q Consensus 321 ~~ll~~------------------------------------------~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 358 (694)
..+... +...|++++|.+.++.+++.... ++.++..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 222222 22334445555555544443322 33344444
Q ss_pred hhhhhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHH
Q 005481 359 VDMYLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV---------AYLAVLS 426 (694)
Q Consensus 359 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---------t~~~ll~ 426 (694)
...|.+.|++++|...|+++.. .+...+..+...+...|+.++|+..++++......++.. .+..+..
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 5555555555555555554321 122233333333334444444444444332211111110 0112233
Q ss_pred HHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 005481 427 ACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLEL 504 (694)
Q Consensus 427 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~ 504 (694)
.+...|+.++|..+++. .+++...+..+.+.|.+.|++++|++.|++. ...|+ ...+..+...+...|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44455555555555541 1233445566667777777777777777665 33343 5566667777777777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 505 GREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 505 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
|+..++++++..|+++..+..++.++...|++++|.++++.+...
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 777777777777776666777777777777777777777766553
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.2e-21 Score=231.12 Aligned_cols=513 Identities=12% Similarity=0.056 Sum_probs=371.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHH-HHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHHhCCC
Q 005481 18 SLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNN-DLIDMYAKCGEMNGACAVFDKMLE--R-NVVSWTALMCGFLQNGN 93 (694)
Q Consensus 18 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 93 (694)
+.+.+...|++++|.+.+..+.+.. +++..... .+.......|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 3345678899999999999998764 34432211 112222345999999999999865 3 44568888889999999
Q ss_pred hHHHHHHHHHhhhCCC------------------C--------------CCceeHH---------------------HHH
Q 005481 94 AKACLSLFCQMGSSSV------------------K--------------PNEFTLS---------------------TNI 120 (694)
Q Consensus 94 ~~~A~~~~~~m~~~g~------------------~--------------p~~~t~~---------------------~ll 120 (694)
.++|+..|+++.+... . |+..... ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999998754321 0 1100000 011
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC--CCc---ccHHHH----------
Q 005481 121 KASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA--KSL---ITWNAM---------- 185 (694)
Q Consensus 121 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~---~~~~~l---------- 185 (694)
.++...|++++|...++.+++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 23445677888888888887763 33567777778888888888888888877654 211 122222
Q ss_pred --HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHH
Q 005481 186 --IAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVK 263 (694)
Q Consensus 186 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~ 263 (694)
...+.+.|++++|+..|++..+... .+...+..+...+...|++++|.+.++.+++..+ .+...+..+...|.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p---~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP---GNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH-
Confidence 2345677888888888888877532 2344556667777788888888888888887665 34455566666664
Q ss_pred cCCHHHHHHHHhhcCCCC------------hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCc-cchHHHHHHHhhh
Q 005481 264 CGCLVEARRVFDLIEQKS------------VISWSSLILGYAQEENLAEAMELFRQLRERSLQVDG-FVLSSMMGVFADF 330 (694)
Q Consensus 264 ~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~ 330 (694)
.++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+. ..+..+...+...
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 456788887777665321 123445667788899999999999999885 4543 4566777789999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCC----Ch---------hhHHHHHHHHHhcC
Q 005481 331 ALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVK----NV---------VTWTVIITGYGKHG 397 (694)
Q Consensus 331 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g 397 (694)
|++++|...++.+.+.... +......+...+.+.|+.++|...++.++.. +. ..+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999998875533 4444555566678899999999999998632 11 11234567788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 005481 398 LAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNL 476 (694)
Q Consensus 398 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 476 (694)
+.++|+.+++. .+++...+..+...+...|++++|+..|+.+.+ ..| +...+..++.+|...|++++|++.
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999872 234556677888899999999999999999988 345 477889999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcc------hHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 477 IESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPV------NYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 477 ~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
++.. ...|+ ...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|...++....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 34454 556777888899999999999999999998776543 556679999999999999999998753
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-22 Score=199.46 Aligned_cols=447 Identities=13% Similarity=0.129 Sum_probs=364.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005481 81 WTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSK 160 (694)
Q Consensus 81 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~ 160 (694)
-..|..-..+.|++++|.+.-...-+.. +.+......+-..+.+..+++...+--...++.. +.-..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556678899999988765543332 1222333333344555555655544444444432 3346789999999999
Q ss_pred cCChHHHHHHHccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHHcccCCchHHHHH
Q 005481 161 CGRINEAARMFDVMPAK---SLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTST-LKACGSLGSVGGGTQI 236 (694)
Q Consensus 161 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~ 236 (694)
.|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+- -......|++.+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999988753 567999999999999999999999999887 45776654443 3344457899999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 005481 237 HGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKS---VISWSSLILGYAQEENLAEAMELFRQLRERSL 313 (694)
Q Consensus 237 ~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 313 (694)
+..+++..+ .-..+|+.|...+-..|+...|+..|++...-| ..+|-.|...|...+.+++|+..|.+....
T Consensus 207 YlkAi~~qp---~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQP---CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhCC---ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 999998775 456789999999999999999999999987543 367889999999999999999999988764
Q ss_pred ccC-ccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC--CC-ChhhHHHH
Q 005481 314 QVD-GFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP--VK-NVVTWTVI 389 (694)
Q Consensus 314 ~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~l 389 (694)
.|+ .+.+..+...|...|.++.|..-++..++.... -+..|+.|..++-..|++.+|.+.+.+.. .| ...+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 565 456777777788999999999999999886533 35688999999999999999999999887 23 46688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhc
Q 005481 390 ITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRA 467 (694)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 467 (694)
...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..|+++++ |.|+ ...|+.|...|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999988 77776 5799999999999999999999999987 8898 66899999999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHH
Q 005481 468 GRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERL 542 (694)
Q Consensus 468 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (694)
|+.+.|.+.+.+. .+.|. ....+.|.+.+...|+..+|++.|+.+++++||.|.+|..++.++.-..+|.+--+.
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999999999987 67776 667899999999999999999999999999999999999999988888888774333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=4.1e-19 Score=200.27 Aligned_cols=508 Identities=10% Similarity=0.013 Sum_probs=331.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCc--ccHHHHHHHHHhCCChHHHHHHHH
Q 005481 25 NLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNV--VSWTALMCGFLQNGNAKACLSLFC 102 (694)
Q Consensus 25 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~ 102 (694)
.|++++|...+..+++.. +.+..++..|...|.+.|+.++|+..+++..+.++ ..|..++..+ +++.+|..+|+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 366667777777666654 33456666666777777777777766666643221 1122222211 55555555555
Q ss_pred HhhhCC--------------------------------------CCCCceeHHHH-HHHhcccCChHHHHHHHHHHHHhC
Q 005481 103 QMGSSS--------------------------------------VKPNEFTLSTN-IKASGVLSSVENGMQIHGMCMKSG 143 (694)
Q Consensus 103 ~m~~~g--------------------------------------~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g 143 (694)
++.... ..|+..+.... .+.+.+.++++.+..++..+.+.+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 554421 12222223333 566667777888888888888776
Q ss_pred CCCChhHHHHHHHHHHh-cCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhhHHHHH
Q 005481 144 FEWNPVVGNSIIDMYSK-CGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEI-PDEFTFTSTL 221 (694)
Q Consensus 144 ~~~~~~~~~~ll~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 221 (694)
+.+..-...|...|.. .++ +.|..+++...+.+...+..+...|.+.|+.++|.++++++...-.. |+..++.-++
T Consensus 213 -pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 213 -TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred -CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 3334445566667776 366 77777776554567888889999999999999999999987654222 3333333222
Q ss_pred ------------------------------HHHcccCCchHHHHHH-----------------------------HHHHH
Q 005481 222 ------------------------------KACGSLGSVGGGTQIH-----------------------------GFLIT 242 (694)
Q Consensus 222 ------------------------------~a~~~~~~~~~a~~~~-----------------------------~~~~~ 242 (694)
..+.+.++++.+.++. ..+.+
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 2222333333222221 11111
Q ss_pred hCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC-C-C----hhhHHHHHHHHHhCCC---HHHHHHH---------
Q 005481 243 SGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ-K-S----VISWSSLILGYAQEEN---LAEAMEL--------- 304 (694)
Q Consensus 243 ~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-~----~~~~~~li~~~~~~g~---~~~A~~~--------- 304 (694)
... .+....--+.-...+.|+.++|.++|+...+ + + ...-+-++..|...+. ..+++.+
T Consensus 371 ~~~---~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 371 QEP---ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred cCC---CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 101 1222222233344567888888888887654 1 1 2233456666766655 3344333
Q ss_pred -------------HHHHHh-cCCccC---ccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCC
Q 005481 305 -------------FRQLRE-RSLQVD---GFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGL 367 (694)
Q Consensus 305 -------------~~~m~~-~g~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 367 (694)
+..... .+..|+ ...+..+..++.. +..++|...+....... |+......+...+...|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVED 524 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCC
Confidence 111111 112233 3334444444444 78888888777666554 343333344555568999
Q ss_pred HHHHHHHHccCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHH
Q 005481 368 IDEATELFNEMPV--KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFSRL 444 (694)
Q Consensus 368 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m 444 (694)
+++|...|+++.. ++...+..+...+.+.|+.++|...|++.++.. |+.. .+..+.......|++++|...+++.
T Consensus 525 ~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 525 YATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999997763 445567777888899999999999999998854 5443 3334444555679999999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcch
Q 005481 445 CNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVN 522 (694)
Q Consensus 445 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 522 (694)
.+ +.|+...|..+..++.+.|++++|++.+++. ...|+ ...+..+..++...|+.++|+..++++++++|+++..
T Consensus 603 L~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 603 LN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred HH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 87 5688889999999999999999999999987 55665 5667888889999999999999999999999999999
Q ss_pred HHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 523 YVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+..++.+|...|++++|...++...+.
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.8e-21 Score=191.22 Aligned_cols=420 Identities=13% Similarity=0.113 Sum_probs=337.9
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcccHHHHHHHHHhcCC
Q 005481 118 TNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA---KSLITWNAMIAGYVLAGY 194 (694)
Q Consensus 118 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 194 (694)
.+..-..+.|++.+|++--..+-... +.+....-.+-..|....+.+....--....+ .-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888877555443332 12222222233455556565554433222222 245689999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 005481 195 SDKGLLLFRKMQEHGEIPD-EFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRV 273 (694)
Q Consensus 195 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (694)
.++|+.+|+.|.+. +|+ ...|..+..++...|+.+.|.+.+...++..+ ....+.+-+....-..|++.+|...
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP---~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP---DLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc---chhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999884 454 45899999999999999999999999998775 3445556677777788999999998
Q ss_pred HhhcCC--CC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCc-cchHHHHHHHhhhccHHHHHHHHHHHHhcCCC
Q 005481 274 FDLIEQ--KS-VISWSSLILGYAQEENLAEAMELFRQLRERSLQVDG-FVLSSMMGVFADFALVEQGKQIHAYAAKVPSG 349 (694)
Q Consensus 274 f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 349 (694)
+.+..+ +. .+.|+.|...+-..|+...|+..|++.... .|+- ..|-.+...+...+.++.|...+..+......
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 887654 32 378999999999999999999999998873 5553 46677777777778888888777776654432
Q ss_pred CCchHHHHHhhhhhhcCCHHHHHHHHccCC--CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 005481 350 LDTSVSNSIVDMYLKCGLIDEATELFNEMP--VKN-VVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVL 425 (694)
Q Consensus 350 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll 425 (694)
...++..|...|...|.+|-|+..+++.. +|+ ...|+.|..++...|+..+|...|.+.+. +.|+. .+.+.|.
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 45667778889999999999999999987 343 56899999999999999999999999998 66776 6889999
Q ss_pred HHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 005481 426 SACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDL 502 (694)
Q Consensus 426 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~ 502 (694)
..+...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|+..+++. .++|+ ...++.+...|...|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 999999999999999999977 6676 557899999999999999999999987 88888 56799999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCC
Q 005481 503 ELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGL 551 (694)
Q Consensus 503 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 551 (694)
+.|.+.+.+++..+|.-+.++..|+.+|-.+|+..+|+.-++...+...
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999876543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=6.1e-18 Score=190.88 Aligned_cols=519 Identities=9% Similarity=0.025 Sum_probs=371.4
Q ss_pred CCChhHHHHH-HHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh-cCChHHHHHHHhccCCCCcccHHHHHH
Q 005481 9 VSERQRLADS-LRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAK-CGEMNGACAVFDKMLERNVVSWTALMC 86 (694)
Q Consensus 9 ~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~ 86 (694)
.|++.++... .+.+...++++.+..++..+.+.+ +.+......|-.+|.. .++ +.|..+++...+.++..+..+..
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~ 255 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYAT 255 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHH
Confidence 3445554444 788899999999999999999987 4455556777778887 477 88888887655668888999999
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCC-CCceeHHHHHHHhcccCChH-HHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 005481 87 GFLQNGNAKACLSLFCQMGSSSVK-PNEFTLSTNIKASGVLSSVE-NGMQIHGMCMKSGFEWN-PVVGNSIIDMYSKCGR 163 (694)
Q Consensus 87 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~g~~~~-~~~~~~ll~~y~~~g~ 163 (694)
.|.+.|+.++|.++++++...-.. |...++.-++ .+.+... .+..-+.. + +.++ ....-.++..+.+.++
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~ 328 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQ 328 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccH
Confidence 999999999999999998654332 5555554443 3333322 11111111 0 1111 1233445788999999
Q ss_pred hHHHHHHHccCCCCCcccHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHH
Q 005481 164 INEAARMFDVMPAKSLITWNAMIAG--YVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLI 241 (694)
Q Consensus 164 ~~~A~~~f~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 241 (694)
++.|.++.+ ....+.. ..+.. ....+...++.+....|.+.. .-+....--+--...+.|+.++|.+++....
T Consensus 329 ~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 329 YDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred HHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 998888854 3222332 22222 223466677777777776641 1123333333333457788999999998887
Q ss_pred HhCCCCCcchhhHHHHHHHHHHcCCH---HHHHHH-------------------------HhhcCC---C--ChhhHHHH
Q 005481 242 TSGFPYSVKTVIAGSLVDFYVKCGCL---VEARRV-------------------------FDLIEQ---K--SVISWSSL 288 (694)
Q Consensus 242 ~~g~~~~~~~~~~~~li~~y~~~g~~---~~A~~~-------------------------f~~~~~---~--~~~~~~~l 288 (694)
.....-..+....+-|+..|.+.+.+ .++..+ +..... . +...|..+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 74221113445566788888888763 233222 111111 2 45677888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCH
Q 005481 289 ILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLI 368 (694)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 368 (694)
..++.. +++++|+..|.+.... .|+......+..++...|+++.|...+..+.... |+...+..+...+.+.|+.
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCH
Confidence 888776 8999999988887765 4666554444555578999999999999876553 3344456777888999999
Q ss_pred HHHHHHHccCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHh
Q 005481 369 DEATELFNEMPVKNVVTWTV---IITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLC 445 (694)
Q Consensus 369 ~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 445 (694)
++|...|++....+...++. +.......|++++|+..|++.++ ..|+...+..+..++.+.|++++|...|+++.
T Consensus 559 ~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 559 AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999877543333332 33334455999999999999998 56788889999999999999999999999998
Q ss_pred hccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcch
Q 005481 446 NDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVN 522 (694)
Q Consensus 446 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 522 (694)
. +.|+ ...+..+...+...|++++|++.+++. ...|+ ...+..+..++...|++++|+..++++++++|++...
T Consensus 637 ~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 637 E---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred H---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 8 4565 667888999999999999999999987 45554 6789999999999999999999999999999999999
Q ss_pred HHHHHhHHHhcCCchHHHHHHHHHHhCCC
Q 005481 523 YVMMSNIHADAGSWNECERLRKLARSKGL 551 (694)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 551 (694)
....+++.....+++.+.+-++..-..++
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999888777655444
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.5e-17 Score=184.58 Aligned_cols=413 Identities=12% Similarity=0.016 Sum_probs=258.1
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCC---CcccHHHHHHHHHhcCChh
Q 005481 120 IKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAK---SLITWNAMIAGYVLAGYSD 196 (694)
Q Consensus 120 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 196 (694)
...+.+.|+++.|...|..+++. .|+...|..+..+|.+.|++++|...++...+. +...|..+..+|...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455556666666666666553 345556666666666666666666666655432 3345666666666666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhh
Q 005481 197 KGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDL 276 (694)
Q Consensus 197 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 276 (694)
+|+.-|......+-. +......++..... ..+........+... .+...+..+.. |........+..-++.
T Consensus 212 eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 212 DALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP---ENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC---CCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 666666554332111 11111111111000 111122222222221 11112222211 2211111111111111
Q ss_pred cCCCCh---hhHHHHHHHH---HhCCCHHHHHHHHHHHHhcC-CccC-ccchHHHHHHHhhhccHHHHHHHHHHHHhcCC
Q 005481 277 IEQKSV---ISWSSLILGY---AQEENLAEAMELFRQLRERS-LQVD-GFVLSSMMGVFADFALVEQGKQIHAYAAKVPS 348 (694)
Q Consensus 277 ~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 348 (694)
..+-+. ..+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|+++.|...+..+++...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 111111 1111111111 22467778888888877654 2333 23455555566677888888888887776542
Q ss_pred CCCchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005481 349 GLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD-GVAYLAV 424 (694)
Q Consensus 349 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 424 (694)
. ....+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..|++.++ +.|+ ...+..+
T Consensus 363 ~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~l 439 (615)
T TIGR00990 363 R-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQL 439 (615)
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHH
Confidence 2 34566777888888999999999988765 34677888999999999999999999999988 4455 4567778
Q ss_pred HHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHH
Q 005481 425 LSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSI-A-------IWQTLLS 494 (694)
Q Consensus 425 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~ 494 (694)
..++...|++++|...|+...+ ..|+ ...++.+..+|...|++++|++.|++. ...|+. . .++..+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 8888999999999999999987 3454 678889999999999999999999886 444431 1 1222222
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 495 ACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 495 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.+...|++++|+..++++++++|++..++..++.+|...|++++|.+.++...+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445699999999999999999999889999999999999999999999988654
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.8e-18 Score=182.22 Aligned_cols=289 Identities=12% Similarity=0.105 Sum_probs=194.9
Q ss_pred HHHcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccC---ccchHHHHHHHhhhccHH
Q 005481 261 YVKCGCLVEARRVFDLIEQK---SVISWSSLILGYAQEENLAEAMELFRQLRERSLQVD---GFVLSSMMGVFADFALVE 334 (694)
Q Consensus 261 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~ 334 (694)
+...|++++|...|.++.+. +..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 33445555555555554321 223444555555555555555555555544321111 123344444455555555
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCC--C------hhhHHHHHHHHHhcCCHHHHHHHH
Q 005481 335 QGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVK--N------VVTWTVIITGYGKHGLAKEAVGLF 406 (694)
Q Consensus 335 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~ 406 (694)
.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+... + ...|..++..+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555554432 224455666666677777777777777666421 1 123556777788889999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005481 407 RKMLLDDVEPD-GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR--IEHYSCIVDSLGRAGRLDEAKNLIESM-PV 482 (694)
Q Consensus 407 ~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 482 (694)
+++.+. .|+ ..++..+...+.+.|++++|.++|+++.+ ..|+ ...+..++.+|.+.|++++|.+.++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998874 344 45777788888899999999999999876 2344 456788899999999999999999987 55
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHh---cCCchHHHHHHHHHHhCCCccCCc
Q 005481 483 KPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHAD---AGSWNECERLRKLARSKGLKKVAG 556 (694)
Q Consensus 483 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 556 (694)
.|+...+..+...+...|++++|...++++++..|+++ .+..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778888899999999999999999999999875 44444544443 569999999999999999988886
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=5.4e-17 Score=179.41 Aligned_cols=350 Identities=11% Similarity=0.027 Sum_probs=276.3
Q ss_pred hcCChHHHHHHHccCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHH
Q 005481 160 KCGRINEAARMFDVMPAK------SLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGG 233 (694)
Q Consensus 160 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 233 (694)
+..+++.-.-+|..-++. +......++..+.+.|++++|+.++.........+. ..+..+..++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHH
Confidence 455666666666666542 333455677888899999999999999887654433 3444455666679999999
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 005481 234 TQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRE 310 (694)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (694)
...++.+.+..+ .+...+..+...|...|++++|...|++... .+...|..+...+.+.|++++|...++.+..
T Consensus 96 ~~~l~~~l~~~P---~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 96 LQVVNKLLAVNV---CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998876 5677788899999999999999999998764 3567888899999999999999999998876
Q ss_pred cCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHH
Q 005481 311 RSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWT 387 (694)
Q Consensus 311 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 387 (694)
.. |+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|+++. ..+...+.
T Consensus 173 ~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 53 33333322334577889999999999988776544445555566778889999999999999876 34667888
Q ss_pred HHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHH
Q 005481 388 VIITGYGKHGLAKE----AVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIV 461 (694)
Q Consensus 388 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 461 (694)
.+...|...|++++ |+..|++..+ ..|+. ..+..+...+...|++++|...++++.+ +.|+ ...+..+.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 89999999999986 8999999998 45654 6788889999999999999999999987 4555 55677889
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 462 DSLGRAGRLDEAKNLIESM-PVKPSIAIWQ-TLLSACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
.+|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++.+|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999987 4567654444 345678899999999999999999999864
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.1e-17 Score=176.08 Aligned_cols=294 Identities=17% Similarity=0.125 Sum_probs=221.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCC-CcchhhHHHHHHHHH
Q 005481 185 MIAGYVLAGYSDKGLLLFRKMQEHGEIPD-EFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPY-SVKTVIAGSLVDFYV 262 (694)
Q Consensus 185 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~~~li~~y~ 262 (694)
....+...|++++|+..|.++.+.+ |+ ..++..+...+...|+++.|..+++.+.+....+ .....++..++..|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3445667888999999999998753 43 4467777778888888888888888877653220 011245677777788
Q ss_pred HcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHH
Q 005481 263 KCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQI 339 (694)
Q Consensus 263 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i 339 (694)
+.|++++|.++|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++...
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------- 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------- 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------
Confidence 88888888888877754 3456777777778888888888888777766432221100
Q ss_pred HHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005481 340 HAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP 416 (694)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 416 (694)
....+..+...|.+.|++++|...|+++.+ .+...+..+...|.+.|++++|+++|+++...+..+
T Consensus 179 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 179 -----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred -----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 011234566777888899999888888752 345678888899999999999999999999753222
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005481 417 DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLSA 495 (694)
Q Consensus 417 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a 495 (694)
...++..+..++...|++++|.+.++.+.+ ..|+...+..++..+.+.|++++|.++++++ ...|+...+..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 245678889999999999999999999987 4677777889999999999999999999876 667999999988887
Q ss_pred HHh---cCChHHHHHHHHHHHc
Q 005481 496 CRV---HGDLELGREVGEILLR 514 (694)
Q Consensus 496 ~~~---~g~~~~a~~~~~~~~~ 514 (694)
+.. +|+.+++...++++++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 664 5688888888888775
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.6e-16 Score=176.40 Aligned_cols=437 Identities=12% Similarity=0.002 Sum_probs=302.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005481 81 WTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSK 160 (694)
Q Consensus 81 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~ 160 (694)
+......+.+.|++++|+..|++..+ +.|+...|..+..++.+.|+++.|...+..+++.. +.+...+..+...|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566788899999999999999886 56787888888899999999999999999999874 3356688889999999
Q ss_pred cCChHHHHHHHccCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHH
Q 005481 161 CGRINEAARMFDVMPAKS---LITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIH 237 (694)
Q Consensus 161 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 237 (694)
.|++++|...|......+ ......++..+.. ..+........+.. .++...+..+ ..+...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhh
Confidence 999999998776543211 1111112211111 22223333332221 1111122221 1111111111111111
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHH------HHcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCCHHHHHHHH
Q 005481 238 GFLITSGFPYSVKTVIAGSLVDFY------VKCGCLVEARRVFDLIEQK------SVISWSSLILGYAQEENLAEAMELF 305 (694)
Q Consensus 238 ~~~~~~g~~~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 305 (694)
....+ .+......++..+ ...+++++|.+.|+...+. ....|+.+...+...|++++|+..|
T Consensus 281 ~~~~~------~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 281 EDSNE------LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hcccc------cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11111 1111111111111 2346788999999887532 3456888888899999999999999
Q ss_pred HHHHhcCCccC-ccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC---C
Q 005481 306 RQLRERSLQVD-GFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV---K 381 (694)
Q Consensus 306 ~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~ 381 (694)
++.... .|+ ...|..+...+...|+++.|...+..+++... .+..++..+...|...|++++|...|++... .
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 998874 455 34677777788889999999999998887653 3577888899999999999999999998863 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCCh-h----
Q 005481 382 NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD-GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRI-E---- 455 (694)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~---- 455 (694)
+...|..+...+.+.|++++|+..|++.+.. .|+ ...+..+..++...|++++|...|+...+ +.|+. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~ 506 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMN 506 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCcccccccc
Confidence 5677888999999999999999999999873 454 57888889999999999999999999877 34431 1
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHH
Q 005481 456 ---HYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIH 530 (694)
Q Consensus 456 ---~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 530 (694)
.++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+.....
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~-------- 578 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL-------- 578 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------
Confidence 1222233344579999999999986 55665 4568889999999999999999999999988754332
Q ss_pred HhcCCchHHHHHHHHHHh
Q 005481 531 ADAGSWNECERLRKLARS 548 (694)
Q Consensus 531 ~~~g~~~~a~~~~~~m~~ 548 (694)
.....|.+|.++....++
T Consensus 579 ~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 579 VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 123345566666555544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=4.8e-16 Score=175.70 Aligned_cols=389 Identities=9% Similarity=0.016 Sum_probs=209.9
Q ss_pred hcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcccHHHHHHHHHhcCChhHHH
Q 005481 123 SGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA---KSLITWNAMIAGYVLAGYSDKGL 199 (694)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 199 (694)
....|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..++..+...|++++|+
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 334444455554444444311 22333455555555555555555555555321 23344555555556666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 005481 200 LLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ 279 (694)
Q Consensus 200 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 279 (694)
..+++..+. .|+...+..+..++...|+.++|...++.+.+..+ .+..++..+...+.+.|..+.|.+.++....
T Consensus 104 ~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P---~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 104 VKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP---QTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 666665543 22222244444555555666666666666665554 3444444566666666777777777766554
Q ss_pred CChh--------hHHHHHHHHH-----hCCCH---HHHHHHHHHHHhc-CCccCccc-hHHHHHHHhhhccHHHHHHHHH
Q 005481 280 KSVI--------SWSSLILGYA-----QEENL---AEAMELFRQLRER-SLQVDGFV-LSSMMGVFADFALVEQGKQIHA 341 (694)
Q Consensus 280 ~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~~t-~~~ll~~~~~~~~~~~a~~i~~ 341 (694)
++. ....++.... ..+++ ++|++.++.+.+. ...|+... +..
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------------------- 238 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------------------- 238 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH-------------------
Confidence 111 1111111111 11122 4455555555432 11222110 000
Q ss_pred HHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCC--hh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 005481 342 YAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKN--VV--TWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP- 416 (694)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 416 (694)
.....+.++...|++++|...|+++...+ .. .-..+...|...|++++|+..|+++.......
T Consensus 239 ------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 239 ------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 00000112234466666666666665321 11 11113556666777777777777765532111
Q ss_pred --CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 005481 417 --DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKR----------MKPR---IEHYSCIVDSLGRAGRLDEAKNLIESM- 480 (694)
Q Consensus 417 --d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~- 480 (694)
.......+..++...|++++|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123344455566677777777777776655211 0122 224456667777788888888888776
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 481 PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 481 ~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
...| +...+..+...+...|++++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2233 35667777777778888888888888888888888778888888888888888888888777653
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=7.3e-16 Score=170.48 Aligned_cols=326 Identities=13% Similarity=0.023 Sum_probs=267.2
Q ss_pred ChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 005481 213 DEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLI 289 (694)
Q Consensus 213 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li 289 (694)
+......++..+.+.|+.+.|..++...+...+. +......++......|++++|...|+++.. .+...|..+.
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3344566778888999999999999999998874 455555666777789999999999999864 3557888899
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCccC-ccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCH
Q 005481 290 LGYAQEENLAEAMELFRQLRERSLQVD-GFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLI 368 (694)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 368 (694)
..+.+.|++++|+..|+++... .|+ ...+..+...+...|+++.|...+..+......+.. .+..+. .+.+.|++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCL-SFLNKSRL 193 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHH-HHHHcCCH
Confidence 9999999999999999999874 555 456677788899999999999999988776544333 333333 47889999
Q ss_pred HHHHHHHccCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHH----HHH
Q 005481 369 DEATELFNEMPVK----NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD-GVAYLAVLSACSHSGLVEE----SQE 439 (694)
Q Consensus 369 ~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~----a~~ 439 (694)
++|...++.+... +...+..+...+...|++++|+..|+++.+.. |+ ...+..+..++...|++++ |..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 9999999987642 33344556778889999999999999999853 44 4677788889999999986 899
Q ss_pred HHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 005481 440 YFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLD 516 (694)
Q Consensus 440 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 516 (694)
.|+++.+ +.|+ ...+..+..+|.+.|++++|+..+++. ...|+ ...+..+..++...|++++|...++++++.+
T Consensus 272 ~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 272 HWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999987 4565 668899999999999999999999987 44555 5567888889999999999999999999999
Q ss_pred CCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 517 GDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 517 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
|+++..+..++.++...|++++|...++...+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9987777778899999999999999999987654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.6e-14 Score=160.11 Aligned_cols=435 Identities=8% Similarity=0.022 Sum_probs=283.0
Q ss_pred HHHhcCChHHHHHHHhccCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHH-H--HHHhcccCCh
Q 005481 56 MYAKCGEMNGACAVFDKMLERNVV---SWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLST-N--IKASGVLSSV 129 (694)
Q Consensus 56 ~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-l--l~a~~~~~~~ 129 (694)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+...+.. + ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 456889999999999988653333 23378888888899999999998886 343333332 2 3466677899
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHh--cCChhHHHHHHHHHHH
Q 005481 130 ENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVL--AGYSDKGLLLFRKMQE 207 (694)
Q Consensus 130 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 207 (694)
+.|.++++.+++.. +.++..+..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999988875 33456667778888888888889888888876544433334444444 4555568888888887
Q ss_pred CCCCCC-hhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHH
Q 005481 208 HGEIPD-EFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWS 286 (694)
Q Consensus 208 ~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 286 (694)
.. |+ ...+..+..++.+.|-...|.++...-. +.+.-...... +.+.|.+..+....++.
T Consensus 198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--------~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~---- 258 (822)
T PRK14574 198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKENP--------NLVSAEHYRQL-----ERDAAAEQVRMAVLPTR---- 258 (822)
T ss_pred hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--------cccCHHHHHHH-----HHHHHHHHHhhcccccc----
Confidence 53 44 4455666667777776666665544321 11111100000 01111111111100000
Q ss_pred HHHHHHHhCCC---HHHHHHHHHHHHh-cCCccCccc-h----HHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHH
Q 005481 287 SLILGYAQEEN---LAEAMELFRQLRE-RSLQVDGFV-L----SSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNS 357 (694)
Q Consensus 287 ~li~~~~~~g~---~~~A~~~~~~m~~-~g~~pd~~t-~----~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 357 (694)
...++ .+.|+.-++.+.. .+-.|.... | .-.+-++...++...+.+.++.+...+.+....+-.+
T Consensus 259 ------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 259 ------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred ------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 00111 2445555555443 122232211 1 1234466677777888888888777776666667778
Q ss_pred HhhhhhhcCCHHHHHHHHccCCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CC
Q 005481 358 IVDMYLKCGLIDEATELFNEMPVK---------NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDD-------------VE 415 (694)
Q Consensus 358 li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~ 415 (694)
+.++|...++.++|..+|+.+... +......|.-+|...+++++|..+++++.+.. ..
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 888888888888888888876421 22234667888888888888888888888731 12
Q ss_pred CCHH-HHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 005481 416 PDGV-AYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTL 492 (694)
Q Consensus 416 pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 492 (694)
||-. .+..+...+...|++.+|++.++.+... -+-|......+.+++...|++.+|++.++.. ...|+ ..+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 3333 3444556678889999999999999762 2336778888999999999999999999776 45565 4455666
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCcch
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGDNPVN 522 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 522 (694)
+.+....+++++|..+.+.+++..|+++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 777788899999999999999999988643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.1e-14 Score=159.12 Aligned_cols=435 Identities=11% Similarity=0.059 Sum_probs=291.0
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCce-eHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005481 88 FLQNGNAKACLSLFCQMGSSSVKPNEF-TLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINE 166 (694)
Q Consensus 88 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~ 166 (694)
..+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...++..+.. -........++...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 45788888888888888764 45431 2226667777778888888888877711 11122233333556777788888
Q ss_pred HHHHHccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHh
Q 005481 167 AARMFDVMPAK---SLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITS 243 (694)
Q Consensus 167 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 243 (694)
|.++|+++.+. +...+..++..|...++.++|++.+.++... .|+...+..++..+...++..+|.+.++.+++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 88888877653 3455666777778888888888888887664 355555544433443445554577777777777
Q ss_pred CCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHH
Q 005481 244 GFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK-SVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSS 322 (694)
Q Consensus 244 g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 322 (694)
.+ .+...+..++....+.|-...|.++...-++- +...+.-+ +.+.|.+.. +.+..|+..-
T Consensus 199 ~P---~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~v----r~a~~~~~~~--- 260 (822)
T PRK14574 199 AP---TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQV----RMAVLPTRSE--- 260 (822)
T ss_pred CC---CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHH----hhcccccccc---
Confidence 65 46666666777777777777777766654421 11111000 011121111 1111111100
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhc-CCCCC--chHHHHH---hhhhhhcCCHHHHHHHHccCCCCC----hhhHHHHHHH
Q 005481 323 MMGVFADFALVEQGKQIHAYAAKV-PSGLD--TSVSNSI---VDMYLKCGLIDEATELFNEMPVKN----VVTWTVIITG 392 (694)
Q Consensus 323 ll~~~~~~~~~~~a~~i~~~~~~~-~~~~~--~~~~~~l---i~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~ 392 (694)
-.+..-.+.+..-++.+... +..|. .....+. +-++.+.|+..++.+.|+.+..+. ..+-.++..+
T Consensus 261 ----~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 261 ----TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred ----hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 00111234444444444432 22222 1112333 346678899999999999998432 2345578899
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccC----------CCCC---h
Q 005481 393 YGKHGLAKEAVGLFRKMLLDD-----VEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKR----------MKPR---I 454 (694)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~ 454 (694)
|...+++++|+.+|+++.... ..++......|..++...+++++|..+++.+.+... -.|+ .
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999997643 122334457889999999999999999999987321 0133 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHh
Q 005481 455 EHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHAD 532 (694)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 532 (694)
..+..++..+...|++.+|++.++++ .-+-|...+..+...++..|++..|+..++.+..++|++..+....+..+..
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 34566788899999999999999998 3334688899999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 005481 533 AGSWNECERLRKLARSK 549 (694)
Q Consensus 533 ~g~~~~a~~~~~~m~~~ 549 (694)
.|+|.+|.++.+...+.
T Consensus 497 l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 497 LQEWHQMELLTDDVISR 513 (822)
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 99999999999877654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.6e-14 Score=152.88 Aligned_cols=515 Identities=13% Similarity=0.099 Sum_probs=370.8
Q ss_pred HHHHHhh--cCCChHHHHHHHHHHHHh--CCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHH---
Q 005481 17 DSLRCCS--KNLLLDYGVQLHGALVKM--GFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFL--- 89 (694)
Q Consensus 17 ~ll~~~~--~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~--- 89 (694)
-|.+||. ..+++..|..+|..++.. ...||+.+... ..+.++|+.+.|+..|.+..+-|+..-++++....
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 3445554 466899999999986664 35566654332 45678999999999999997766655555544221
Q ss_pred hC---CChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCh
Q 005481 90 QN---GNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEW--NPVVGNSIIDMYSKCGRI 164 (694)
Q Consensus 90 ~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~y~~~g~~ 164 (694)
.. ..+..++.++...-... .-|+...+.|.+-+.-.|++..+..+...++...... -...|--+..+|...|++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 22 23455666665554322 2366778888888889999999999999888765221 123466788999999999
Q ss_pred HHHHHHHccCCCC---C-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHcccC----CchHHHH
Q 005481 165 NEAARMFDVMPAK---S-LITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEF-TFTSTLKACGSLG----SVGGGTQ 235 (694)
Q Consensus 165 ~~A~~~f~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~----~~~~a~~ 235 (694)
+.|...|...... + +..+--+...|...|+++.+...|+...+. .||.. |...+...|+..+ ..+.|..
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 9999999776542 2 445666788999999999999999998774 35544 6666666666654 4566777
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhc--------CCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005481 236 IHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLI--------EQKSVISWSSLILGYAQEENLAEAMELFRQ 307 (694)
Q Consensus 236 ~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (694)
+.....+..+ .|...|-.+..+|-...-+.. +.+|... ....+...|.+...+...|++.+|...|..
T Consensus 402 ~l~K~~~~~~---~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 402 VLGKVLEQTP---VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHhccc---ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 7777777664 677778777777765544332 4444332 234567789999999999999999999999
Q ss_pred HHhc---CCccCcc-----c-hHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhc-------CCHHHH
Q 005481 308 LRER---SLQVDGF-----V-LSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKC-------GLIDEA 371 (694)
Q Consensus 308 m~~~---g~~pd~~-----t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~-------g~~~~A 371 (694)
.... -..+|.. | --.+....-..++.+.|.+++..+++..+ ..|++|.+. +...+|
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP--------GYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc--------hhHHHHHHhhHHHHhccCcHHH
Confidence 8765 2334442 1 22233344556788999999999887643 245555555 567788
Q ss_pred HHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcc------------CcHH
Q 005481 372 TELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDD-VEPDGVAYLAVLSACSHS------------GLVE 435 (694)
Q Consensus 372 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~------------g~~~ 435 (694)
...+.... ..++..|+-+...+.....+..|.+-|....+.- ..+|..+..+|.+.|... +..+
T Consensus 550 ~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 550 SLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 88888776 4577788888888888888888888777666532 337888888888866532 4577
Q ss_pred HHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005481 436 ESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILL 513 (694)
Q Consensus 436 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 513 (694)
.|+++|..+.+. -+.|...-+-+.-.++..|++.+|.++|.+. ....+..+|-.+...|...|++-.|.++|+..+
T Consensus 630 KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 630 KALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888772 2345667778888999999999999999887 222345679999999999999999999999988
Q ss_pred cC-C-CCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 514 RL-D-GDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 514 ~~-~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
+. . .+++.....|+.++.+.|+|.+|.+.....+...
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 64 2 3567888999999999999999999988877543
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=3.9e-14 Score=160.29 Aligned_cols=405 Identities=10% Similarity=-0.016 Sum_probs=279.5
Q ss_pred CChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHH
Q 005481 10 SERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE--R-NVVSWTALMC 86 (694)
Q Consensus 10 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 86 (694)
.++......+......|+.++|.+++....... +.+...+..+..++.+.|++++|..+|++..+ | +...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455566777788888999999999998887633 45566788999999999999999999999633 3 4556788888
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCCC-CceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005481 87 GFLQNGNAKACLSLFCQMGSSSVKP-NEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRIN 165 (694)
Q Consensus 87 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~ 165 (694)
.+...|++++|+..+++..+. .| +.. +..+..++...|+.+.|...++.+++.. +.+...+..+...+...|..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 899999999999999999875 34 444 7777788888999999999999999874 335556667788888889999
Q ss_pred HHHHHHccCCCCCcc--------cHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCChh-hHH----HHHHH
Q 005481 166 EAARMFDVMPAKSLI--------TWNAMIAGYV-----LAGYS---DKGLLLFRKMQEH-GEIPDEF-TFT----STLKA 223 (694)
Q Consensus 166 ~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a 223 (694)
.|.+.++.... ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.+
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 99999987775 211 1122222221 12233 6778888888753 2223321 111 11334
Q ss_pred HcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHhCC
Q 005481 224 CGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKS-------VISWSSLILGYAQEE 296 (694)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g 296 (694)
+...|++++|...++.+.+.+.+ ........+...|...|++++|...|+++.+.+ ...+..+..++.+.|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~--~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQI--IPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCC--CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 45567778888888887776532 111222225667777788888888777764322 123455556677778
Q ss_pred CHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCC---chHHHHHhhhhhhcCCHHHHHH
Q 005481 297 NLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLD---TSVSNSIVDMYLKCGLIDEATE 373 (694)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~ 373 (694)
++++|..+++.+... .|.......+ ....|+ ......+...+...|++++|++
T Consensus 325 ~~~eA~~~l~~~~~~--~P~~~~~~~~----------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 325 NYPGALTVTAHTINN--SPPFLRLYGS----------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cHHHHHHHHHHHhhc--CCceEeecCC----------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888877777654 2221110000 001222 2244566777888899999999
Q ss_pred HHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhcc
Q 005481 374 LFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDK 448 (694)
Q Consensus 374 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 448 (694)
+|+++. ..+...+..++..+...|++++|++.+++.+. ..||. ..+......+...|++++|..+++.+++..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 988876 33667888888999999999999999998887 55765 455566667788899999999999998843
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.2e-14 Score=149.73 Aligned_cols=537 Identities=12% Similarity=0.064 Sum_probs=373.7
Q ss_pred cccCCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc---CChHHHHHHHhcc---CCC
Q 005481 3 RVSFSLVSERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKC---GEMNGACAVFDKM---LER 76 (694)
Q Consensus 3 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~f~~~---~~~ 76 (694)
|++-..+||+..-.. .++.+.++.+.|+..|.+..+.. +.++.++-.|--+-... ..+..+..++... ...
T Consensus 192 ~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 192 RINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred hcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 344555666654222 45578899999999999998865 22222222222111122 3345566666554 235
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCC--CCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005481 77 NVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVK--PNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSI 154 (694)
Q Consensus 77 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 154 (694)
|++..|.|-+-|.-.|++..+..+...+...... .-...|-.+.+++-..|+++.|...|....+..-...+..+-.|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 7888999999999999999999999998764311 12344777888899999999999999988876422223445568
Q ss_pred HHHHHhcCChHHHHHHHccCCCC---CcccHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHccc
Q 005481 155 IDMYSKCGRINEAARMFDVMPAK---SLITWNAMIAGYVLAG----YSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSL 227 (694)
Q Consensus 155 l~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 227 (694)
..+|.+.|+++.+...|+.+... +..+...+...|...+ ..+.|..++.+..+.- .-|...|..+-..+-..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 89999999999999999988653 3445556666666665 4466666666665532 23555666665555544
Q ss_pred CCchHHHHHHHHH----HHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC-------Ch------hhHHHHHH
Q 005481 228 GSVGGGTQIHGFL----ITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK-------SV------ISWSSLIL 290 (694)
Q Consensus 228 ~~~~~a~~~~~~~----~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~li~ 290 (694)
+.......+..+ ...+.. ..+.+.|.+...+...|.++.|...|++.... |. .+-..+..
T Consensus 428 -d~~~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 428 -DPWASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred -ChHHHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 333335555444 345555 77889999999999999999999999876422 22 12233555
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCccCccc-hHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHH
Q 005481 291 GYAQEENLAEAMELFRQLRERSLQVDGFV-LSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLID 369 (694)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 369 (694)
.+-..++++.|.+.|..+... .|.-+. |..++-..-..++..+|...+..+.... ..++.+++-+.+.|.+...+.
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence 666778999999999999886 454333 2222212223456778888888777654 236666767777888888888
Q ss_pred HHHHHHccCC-----CCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005481 370 EATELFNEMP-----VKNVVTWTVIITGYGK------------HGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSG 432 (694)
Q Consensus 370 ~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 432 (694)
.|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++.. +-|...-+.+.-.++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 8888665554 2355555555554432 245788999999988742 234466777777889999
Q ss_pred cHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005481 433 LVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM----PVKPSIAIWQTLLSACRVHGDLELGREV 508 (694)
Q Consensus 433 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 508 (694)
++.+|..+|.+..+.. .-...+|-.+...|..+|++-.|+++|+.. .-+.+..+.+.|..++...|.+.+|.+.
T Consensus 661 ~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred CchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999998732 234567888999999999999999999876 2234677889999999999999999999
Q ss_pred HHHHHcCCCCCcchHHHHHhHH-------------------HhcCCchHHHHHHHHHHhCCCc
Q 005481 509 GEILLRLDGDNPVNYVMMSNIH-------------------ADAGSWNECERLRKLARSKGLK 552 (694)
Q Consensus 509 ~~~~~~~~p~~~~~~~~l~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~ 552 (694)
+..+..+.|.++..-..++-+. ...+..++|.++|..+.+.+-+
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999987776665433 3346678888999998876543
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.4e-13 Score=131.17 Aligned_cols=421 Identities=11% Similarity=0.081 Sum_probs=243.6
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh--cCCh-------------------------HH
Q 005481 13 QRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAK--CGEM-------------------------NG 65 (694)
Q Consensus 13 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~-------------------------~~ 65 (694)
.|=++|++.- ..|.+..+--+++.|.+.|.+.+..+--.|+..-+- ..++ +-
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3456666654 567889999999999999988888777766654321 1111 11
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 005481 66 ACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFE 145 (694)
Q Consensus 66 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 145 (694)
|.-+|+..| ++..+|..||.|+++-...+.|.+++++-.....+.+..+||.+|.+-+ +..++.+..+|+...+.
T Consensus 196 AdL~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcC
Confidence 222333322 3445778888888887778888888888777767777778887776643 23347777788877778
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHc
Q 005481 146 WNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACG 225 (694)
Q Consensus 146 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 225 (694)
||..|+|++++..++.|+++.|++. |++++.+|++-|+.|...+|..+|..+.
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 8888888888888888877776654 3455555666666666666666666555
Q ss_pred ccCCchH-HHHHHHHHHHh----CCC--CCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC-----------ChhhHHH
Q 005481 226 SLGSVGG-GTQIHGFLITS----GFP--YSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK-----------SVISWSS 287 (694)
Q Consensus 226 ~~~~~~~-a~~~~~~~~~~----g~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~ 287 (694)
+.++..+ +..+...+... .+. .+.+...+.+-++.+....+.+-|.++-.-.... ..+-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 5555433 22222222221 111 1123333344444444555555555544333211 1233555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCC
Q 005481 288 LILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGL 367 (694)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 367 (694)
+....++....+.-+..|+.|.-.-.-|+..+...++++....+.++...+++..++..|.........-++..+++..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k- 482 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK- 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-
Confidence 6677788888888888888888877888888888899988888888888888888887775443333322222222211
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhc-CCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHh
Q 005481 368 IDEATELFNEMPVKNVVTWTVIITGYGKH-GLA-KEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLC 445 (694)
Q Consensus 368 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~-~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 445 (694)
+.|+...-.-+-...++. -++ +.....-.+|.+....|.. .+.++..+.+.|..++|.++|..+.
T Consensus 483 -----------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~--l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 483 -----------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATS--LNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred -----------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhH--HHHHHHHHHHcchHHHHHHHHHHHH
Confidence 012111111111111110 011 1112222344444444433 3333334566777777777777765
Q ss_pred hccCCCCChhHHH---HHHHHHHhcCChHHHHHHHHhC
Q 005481 446 NDKRMKPRIEHYS---CIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 446 ~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~ 480 (694)
+..+-.|.....+ -+++.-.+....-.|...++-|
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444444 3344445566666666666655
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.5e-12 Score=135.75 Aligned_cols=345 Identities=13% Similarity=0.102 Sum_probs=234.8
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhcc---CCCCcccHHHHHHHHHhCCChHHHH
Q 005481 22 CSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKM---LERNVVSWTALMCGFLQNGNAKACL 98 (694)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 98 (694)
....|+++.|..++..+++.. +.....|-.|-..|-..|+.+++...+-.. ...|..-|-.+-....+.|++.+|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999999876 667788999999999999999998876544 3346677988888889999999999
Q ss_pred HHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHHhcCChHHHHHHHccC
Q 005481 99 SLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNS----IIDMYSKCGRINEAARMFDVM 174 (694)
Q Consensus 99 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----ll~~y~~~g~~~~A~~~f~~~ 174 (694)
-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .++.|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999998753 33433333344567788999999999999988754333333333 345566677778888888776
Q ss_pred CC--C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh----------------------hHH----HHHHH
Q 005481 175 PA--K---SLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEF----------------------TFT----STLKA 223 (694)
Q Consensus 175 ~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~~----~ll~a 223 (694)
.. . +...+|.++..|.+...++.|......+......+|.. .|. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 54 2 44578899999999999999999888887622222221 111 12223
Q ss_pred HcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCCHH
Q 005481 224 CGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ----KSVISWSSLILGYAQEENLA 299 (694)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~ 299 (694)
+......+....+...+.+....++.++..+.-+.++|...|++.+|.++|..+.. .+...|--+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 34455555566666666666655446677777788888888888888888877764 24567777888888888888
Q ss_pred HHHHHHHHHHhcCCccCc-cchHHHHHHHhhhccHHHHHHHHHHHH--------hcCCCCCchHHHHHhhhhhhcCCHHH
Q 005481 300 EAMELFRQLRERSLQVDG-FVLSSMMGVFADFALVEQGKQIHAYAA--------KVPSGLDTSVSNSIVDMYLKCGLIDE 370 (694)
Q Consensus 300 ~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~ 370 (694)
+|++.|...+.. .|+. ..-.+|-+.+.+.|+.++|.+.+..+. ..+..|+..+.--..+.|.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 888888777764 4433 223333444556677777766666533 22233444444445556666666555
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.6e-13 Score=133.04 Aligned_cols=469 Identities=13% Similarity=0.095 Sum_probs=289.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhccCC----CCcc-cHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHH
Q 005481 43 FSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE----RNVV-SWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLS 117 (694)
Q Consensus 43 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 117 (694)
+..+..+...|.+-|.......+|+..++-+.+ ||.- .--.+...+.+...+.+|+++|+.....-...+..+-.
T Consensus 197 ldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 197 LDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred ccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 344445555666666666677777776665543 2221 11123345566667777777776665542222333333
Q ss_pred HHH----HHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC----------------C
Q 005481 118 TNI----KASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA----------------K 177 (694)
Q Consensus 118 ~ll----~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~----------------~ 177 (694)
-++ -.+.+.|+++.|..-|+...+. .|+..+.-.|+-.+..-|+-++..+.|.+|.. |
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 333 3356777777777777777765 46666555566666666777777777766642 1
Q ss_pred CcccHHHHH-----HHHHhcC--ChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHcccCCchHHHHHHHHHHHhCCCCCc
Q 005481 178 SLITWNAMI-----AGYVLAG--YSDKGLLLFRKMQEHGEIPDEFT-FTSTLKACGSLGSVGGGTQIHGFLITSGFPYSV 249 (694)
Q Consensus 178 ~~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 249 (694)
+....|.-| .-.-+.. +.++++-.-.++..--+.||-.. |.-.+...-.....+ ...
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~-------la~-------- 419 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAE-------LAI-------- 419 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhh-------hhh--------
Confidence 222222222 1111111 11122222222222122222110 100011100000000 000
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHH----HH-HHHHh-CCCHHHHHHHHHHHHhcCCccCccchHHH
Q 005481 250 KTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSS----LI-LGYAQ-EENLAEAMELFRQLRERSLQVDGFVLSSM 323 (694)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~----li-~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 323 (694)
+ .--.-..-|.+.|+++.|.+++.-...+|..+-++ |- --|.+ ..++.+|.+.-+..+... +-+....+.-
T Consensus 420 d--lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nk 496 (840)
T KOG2003|consen 420 D--LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNK 496 (840)
T ss_pred h--hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcC
Confidence 0 00112334778999999988888777665433222 21 12233 335666666655544321 1111111111
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHH
Q 005481 324 MGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAK 400 (694)
Q Consensus 324 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 400 (694)
-......|++++|.+.+..++...-......|| +.-.+-+.|++++|++.|-++. ..++.....+.+.|-...+..
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 122334688999999999888765544444444 3345778899999999998765 457777777888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 480 (694)
+|++++.+.... ++.|...+.-|...|-+.|+-.+|.+++..--+ + ++.+.++...|..-|....-+++|+.+|++.
T Consensus 576 qaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-y-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-Y-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-c-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999877652 444557788888999999999999998776544 2 5567899999999999999999999999998
Q ss_pred -CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCC
Q 005481 481 -PVKPSIAIWQTLLSAC-RVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGS 535 (694)
Q Consensus 481 -~~~p~~~~~~~ll~a~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 535 (694)
-++|+.+-|..++..| ++.|++..|...|+.....-|.+....-.|+.+....|.
T Consensus 653 aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 653 ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 5789999999999876 678999999999999999999999988888888888875
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=8.3e-12 Score=120.69 Aligned_cols=417 Identities=15% Similarity=0.136 Sum_probs=277.3
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHh--cccCChHHH-HHHHHHHHHhCCCCChhHHHHH
Q 005481 78 VVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKAS--GVLSSVENG-MQIHGMCMKSGFEWNPVVGNSI 154 (694)
Q Consensus 78 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 154 (694)
+++=|.|+.. ...|..+.+.-+|+.|.+.|+..+...-..++... -...++--+ .+.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 4566777664 45788999999999999998776665555554432 222232222 2233334433321 22222
Q ss_pred HHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHH
Q 005481 155 IDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGT 234 (694)
Q Consensus 155 l~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 234 (694)
|.|.+.+ ++-+...+...++..||.|+++--..+.|.+++++-.....+.+..+|+.+|.+-+ +..++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 3455444 44455556778999999999999999999999999988888899999999998754 44458
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhh----cC----CCChhhHHHHHHHHHhCCCHHH-HHHHH
Q 005481 235 QIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDL----IE----QKSVISWSSLILGYAQEENLAE-AMELF 305 (694)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~----~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~ 305 (694)
++..+|+..... ||..++|+++....+.|+++.|++.+-+ |. +|...+|..+|..+.+.+++.+ |..++
T Consensus 259 ~Lv~EMisqkm~--Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 259 KLVAEMISQKMT--PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHHHHHHHhhcC--CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 999999999998 9999999999999999999888766544 33 5788999999999999888755 55555
Q ss_pred HHHHh----cCCcc----CccchHHHHHHHhhhccHHHHHHHHHHHHhcC----CCC---CchHHHHHhhhhhhcCCHHH
Q 005481 306 RQLRE----RSLQV----DGFVLSSMMGVFADFALVEQGKQIHAYAAKVP----SGL---DTSVSNSIVDMYLKCGLIDE 370 (694)
Q Consensus 306 ~~m~~----~g~~p----d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~----~~~---~~~~~~~li~~y~~~g~~~~ 370 (694)
.+++. +.++| |...|.+.++.|.+..+.+.|.++++...... +.+ ...-|..+.+..+....++.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544 22333 44568889999999999999999998775431 122 23345667788888888999
Q ss_pred HHHHHccCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-c------------
Q 005481 371 ATELFNEMPV----KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSG-L------------ 433 (694)
Q Consensus 371 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g-~------------ 433 (694)
-..+|+.|.. |+..+-..++.+....|+++-.-.++..|...|..-+...-.-++.-.++.. .
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 9999998873 5656666677777778888877778877777664333332222222222221 0
Q ss_pred -------HHHH-HHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHh
Q 005481 434 -------VEES-QEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-------PVKPSIAIWQTLLSACRV 498 (694)
Q Consensus 434 -------~~~a-~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~a~~~ 498 (694)
+.++ ...-.++. .........++..-++.|.|+.++|.+++.-. +..|......-|+.+-..
T Consensus 497 ~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 0000 01111121 12334455677777777888888887776544 333444444455555556
Q ss_pred cCChHHHHHHHHHHHcCC
Q 005481 499 HGDLELGREVGEILLRLD 516 (694)
Q Consensus 499 ~g~~~~a~~~~~~~~~~~ 516 (694)
.++.-.|..+++-+.+.+
T Consensus 574 ~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 666666666666665443
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=2.7e-10 Score=116.02 Aligned_cols=508 Identities=12% Similarity=0.052 Sum_probs=373.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHH------------HHHHHH
Q 005481 25 NLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTA------------LMCGFL 89 (694)
Q Consensus 25 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~------------li~~~~ 89 (694)
.+++..|+.++..+.+.+ +.++..|-+-...=-..|.+..|+.+..+--+ ++...|-. +|.--+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 457888999999999887 34444444444444455677777666544311 11112211 111111
Q ss_pred -----------hC----CChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005481 90 -----------QN----GNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSI 154 (694)
Q Consensus 90 -----------~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 154 (694)
+. .+...=.++++..++. -|+.+ .|=++.....+.+.|+.++..+++.- +.+...|.
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl-- 414 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLWL-- 414 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH--
Confidence 11 1122223344444443 23322 22344455566677888888888763 33444444
Q ss_pred HHHHHhcCChHHHHHHHccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCChhhHHHHHHHHccc
Q 005481 155 IDMYSKCGRINEAARMFDVMPA---KSLITWNAMIAGYVLAGYSDKGLLLFRK----MQEHGEIPDEFTFTSTLKACGSL 227 (694)
Q Consensus 155 l~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~ 227 (694)
+|++...++.|..++....+ .+...|.+-...--.+|+.+...++.++ +...|+..+...|..=..+|-..
T Consensus 415 --AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 415 --ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 45666778888888876654 4777888777777788999888888765 45679999999999989999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHH
Q 005481 228 GSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMEL 304 (694)
Q Consensus 228 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 304 (694)
|..-....|...++..|.+......+|+.-.+.+.+.+.++-|+.+|....+ .+...|...+..--..|..++...+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999999987656678899999999999999999999987764 3567898888888888999999999
Q ss_pred HHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC--CCC
Q 005481 305 FRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP--VKN 382 (694)
Q Consensus 305 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~ 382 (694)
|++....- +-....+.......-..|++..|+.++..+.+.... +..++-+-+..-.....++.|..+|.+.. .+.
T Consensus 573 lqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 573 LQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 99998762 223334444445556679999999999999887655 77788888899999999999999999876 467
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHH
Q 005481 383 VVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCI 460 (694)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 460 (694)
...|.--+...-..+..++|++++++.++ .-|+. ..|..+...+-+.++++.|++.|..-.+ .-|+ +..|-.|
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllL 725 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIPLWLLL 725 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCchHHHHH
Confidence 77887777777778999999999999888 45776 4677778888899999999998887665 3454 5678888
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC-------------------
Q 005481 461 VDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN------------------- 519 (694)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------------------- 519 (694)
.++=-+.|.+-.|..++++. ..+.+...|-..+..-.++|+.+.|..+..++++--|.+
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 88888999999999999987 334567889999999999999999999888888755443
Q ss_pred -----------cchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 520 -----------PVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 520 -----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
+......+.++....+++.|++.|....+.+
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4455566777888888899999888887654
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=3.2e-10 Score=115.54 Aligned_cols=507 Identities=11% Similarity=0.061 Sum_probs=372.2
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHhhhCC
Q 005481 32 VQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE--R-NVVSWTALMCGFLQNGNAKACLSLFCQMGSSS 108 (694)
Q Consensus 32 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 108 (694)
.+++...++. ++.++..|...+. ....++|+.++.+..+ | ++..|. +|++..-++.|..+++..++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-
Confidence 4455555444 3566666665554 4566667777777654 2 233343 445556677788888877764
Q ss_pred CCCCceeHHHHHHHhcccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC------CC
Q 005481 109 VKPNEFTLSTNIKASGVLSSVENGMQIHGMCM----KSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA------KS 178 (694)
Q Consensus 109 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~------~~ 178 (694)
++.+...|.+....=-..|+.+....+.+..+ ..|+..+..-|-.=...+-+.|..-.+..+...... .-
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 56677777777666667777777777765544 346777776666666666677776666666655432 12
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 005481 179 LITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLV 258 (694)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li 258 (694)
..+|+.-...|.+.+.++-|..+|...++. .+-+...|..+...--..|..+....+++.++..-+ .....|-...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p---kae~lwlM~a 591 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP---KAEILWLMYA 591 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC---cchhHHHHHH
Confidence 347888888888888888888888877763 223444555555555566778888888888877665 4556666667
Q ss_pred HHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHH
Q 005481 259 DFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQ 335 (694)
Q Consensus 259 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 335 (694)
..+-+.|++..|+.++...-+ .+...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..---+++.++
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 777788899999888877653 35567888888888899999999999887764 5565555555555556788899
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005481 336 GKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV--K-NVVTWTVIITGYGKHGLAKEAVGLFRKMLLD 412 (694)
Q Consensus 336 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (694)
|.++++..++.- +.-...|..+.+.|-+.++++.|.+.|..-.+ | .+..|-.+...--+.|+..+|..++++....
T Consensus 670 A~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 670 ALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999988877753 22456778888899999999999999877653 4 4557888888888889999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 005481 413 DVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTL 492 (694)
Q Consensus 413 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 492 (694)
+ +-|...|...+..=.+.|+.++|..+..++.++ .+.+...|..-|.+..+.++-..+.+.+++..- |+.+.-++
T Consensus 749 N-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllai 823 (913)
T KOG0495|consen 749 N-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAI 823 (913)
T ss_pred C-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHH
Confidence 5 235578899999999999999999999998874 345567888999999999998888888888743 55556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEE
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVAGRSWVEV 562 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 562 (694)
...+.....++.|...|+++++.+|++..+|..+-..+...|.-++-.++++...... +.-|..|..+
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 6777888899999999999999999999999999999999999999999998876542 3445556543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=5.6e-15 Score=147.35 Aligned_cols=254 Identities=17% Similarity=0.173 Sum_probs=114.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHH-HHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCH
Q 005481 290 LGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMG-VFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLI 368 (694)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 368 (694)
..+.+.|++++|++++++.......|+...|-.++. .+...++.+.|.+.+..+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 344455555555555544333322233333333222 333455555566555555554433 45556666666 678889
Q ss_pred HHHHHHHccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHh
Q 005481 369 DEATELFNEMP--VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDD-VEPDGVAYLAVLSACSHSGLVEESQEYFSRLC 445 (694)
Q Consensus 369 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 445 (694)
++|.+++...- .++...+..++..+...|+++++..+++++.... .+++...|..+...+.+.|+.++|.+.++++.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988887664 3566778888889999999999999999987643 34566778888888999999999999999998
Q ss_pred hccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcch
Q 005481 446 NDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVN 522 (694)
Q Consensus 446 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 522 (694)
+ ..|+ ......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++++..|+|+..
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 8 5675 778889999999999999988888776 224456788999999999999999999999999999999999
Q ss_pred HHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 523 YVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
...+++++...|+.++|.++++...+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987643
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=2.9e-11 Score=127.06 Aligned_cols=526 Identities=11% Similarity=0.006 Sum_probs=290.0
Q ss_pred cCCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHH
Q 005481 5 SFSLVSERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTAL 84 (694)
Q Consensus 5 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 84 (694)
..|+.||++||.+++..|+..|+.+.|- +|..|.-...+....+++.++......++.+.+. +|...+|+.|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~L 89 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNL 89 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHH
Confidence 3689999999999999999999999988 9999988888888899999999988888887765 6788899999
Q ss_pred HHHHHhCCChHHHHHHHHH-hhh-------CCCCCCceeHHHHHHHhcccC-C------hHHHHHHHHHHHHhCC-CCCh
Q 005481 85 MCGFLQNGNAKACLSLFCQ-MGS-------SSVKPNEFTLSTNIKASGVLS-S------VENGMQIHGMCMKSGF-EWNP 148 (694)
Q Consensus 85 i~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~g~-~~~~ 148 (694)
..+|.+.|+... ++..++ |.. .|+.--..-+-..+.+|-..- + ..--+.+++..++.+. .|..
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999999998765 333333 211 222111111222222221110 0 0111123333333331 1111
Q ss_pred hHHHHH---HHHHHh-cCChHHHHHHHccCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005481 149 VVGNSI---IDMYSK-CGRINEAARMFDVMPA-KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKA 223 (694)
Q Consensus 149 ~~~~~l---l~~y~~-~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 223 (694)
.-++.. +.-... ...+++-...-....+ ++..++.+.+..-..+|+.+.|..++.+|++.|++.+..-|..++-+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 111111 111111 1122333333333333 68888888888888899999999999999999988888877777655
Q ss_pred HcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCH-----
Q 005481 224 CGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENL----- 298 (694)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----- 298 (694)
.++......+..-|...|+. |+..++.--+-...++|....+....+.-.--....+..+..+...+.+.
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~--p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQ--PGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCC--CCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 77778888888888888888 66666665555555544422222111000000011222222221111111
Q ss_pred HHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccC
Q 005481 299 AEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEM 378 (694)
Q Consensus 299 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 378 (694)
.-....+++..-.|+......|..... ....|.-+...++-..+.......+ +.-+++|. +.+.+.|.+.
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s----~~~V~a~~-----~~lrqyFrr~ 393 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDS----GQNVDAFG-----ALLRQYFRRI 393 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccC----cchHHHHH-----HHHHHHHHHH
Confidence 112222222222333322222222222 2224555555555544432211111 11111111 2234455554
Q ss_pred CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHHHHHccC
Q 005481 379 PVKNVVTWTVIITGYGK---HGLAKEAVGLFRKM------------LL----DDVEP-------DGVAYLAVLSACSHSG 432 (694)
Q Consensus 379 ~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------d~~t~~~ll~a~~~~g 432 (694)
..+....-.-.-.+... ..+..+..++.... .. .-..| =...-+.++..|...-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 43322211111122221 11111111211111 00 00111 0112233444555444
Q ss_pred cHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHH
Q 005481 433 LVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMP-----VKPSIAIWQTLLSACRVHGDLELGRE 507 (694)
Q Consensus 433 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~a~~~~g~~~~a~~ 507 (694)
+..++...-+.... .-+ | ..|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+++....+..
T Consensus 474 n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 474 NKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 44555443333322 211 2 578999999999999999999999873 22345557788888888998888888
Q ss_pred HHHHHHc---CCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 005481 508 VGEILLR---LDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVAGRSW 559 (694)
Q Consensus 508 ~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 559 (694)
+.+++.+ ..|.-......+.+..+..|+-+...++.+-+...|+.. .|.-|
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8887765 334445566677888889999999999999999888765 34444
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=5.1e-11 Score=117.40 Aligned_cols=403 Identities=13% Similarity=0.068 Sum_probs=241.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC-ceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 005481 81 WTALMCGFLQNGNAKACLSLFCQMGSSSVKPN-EFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWN-PVVGNSIIDMY 158 (694)
Q Consensus 81 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~y 158 (694)
+-....-|.++|.+++|++.|.+.++ ..|| ...|...-.+|...|+++.+.+--...++. .|+ +-.+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 34445668899999999999999987 5788 777888888888999999998877777765 444 34566666788
Q ss_pred HhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHH--------HHH-C--CCCCChhhHHHHHHHHccc
Q 005481 159 SKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRK--------MQE-H--GEIPDEFTFTSTLKACGSL 227 (694)
Q Consensus 159 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~--g~~p~~~t~~~ll~a~~~~ 227 (694)
-..|++++|+.= +|-.++..++....-.--+.+++.. -.+ . .+.|+.....+.+..+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 888888887632 2333344443333322223333322 111 1 2345555544444443211
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHc-CCHHHHHHHHhhc-------CCCC---------hhhHHHHHH
Q 005481 228 GSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKC-GCLVEARRVFDLI-------EQKS---------VISWSSLIL 290 (694)
Q Consensus 228 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~-------~~~~---------~~~~~~li~ 290 (694)
-.. .+...+.. .|...-..+=..|... ..+..|...+.+- ...+ ..+...-..
T Consensus 265 ~~~--------~~~~~~~k--sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 265 PKP--------LFDNKSDK--SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred ccc--------cccCCCcc--chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 000 00000000 1111112222222211 1233333332221 1111 111111122
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHH
Q 005481 291 GYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDE 370 (694)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 370 (694)
.+.-.|+..+|...|+........++.. |-- +..+|....+.++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~-----------------------------------~a~~y~d~~~~~~ 378 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIK-----------------------------------RAAAYADENQSEK 378 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHH-----------------------------------HHHHHhhhhccHH
Confidence 2334555566666666655543222221 322 3334555555555
Q ss_pred HHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 371 ATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 371 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
-...|+... ..|..+|..-...+.-.+++++|..=|++.++ +.|+. ..|..+.-+..+.+.++++...|+..++
T Consensus 379 ~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk 456 (606)
T KOG0547|consen 379 MWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK 456 (606)
T ss_pred HHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443 22444555555555566778888888888877 55655 5677777777788889999999998887
Q ss_pred ccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 005481 447 DKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS---------IAIWQTLLSACRVHGDLELGREVGEILLRLD 516 (694)
Q Consensus 447 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 516 (694)
++ +.-++.|+-....+..++++++|.+.|+.. .+.|+ +.+...++-. +-.+++..|+.+++++++++
T Consensus 457 kF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 457 KF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD 533 (606)
T ss_pred hC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC
Confidence 54 344678888888999999999999998876 44443 2233333332 23489999999999999999
Q ss_pred CCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 517 GDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 517 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
|....+|..|+.+-...|+.++|.++|+...
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988999999999999999999999999764
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.4e-10 Score=113.63 Aligned_cols=325 Identities=11% Similarity=0.048 Sum_probs=226.9
Q ss_pred CChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChh-hHHHHHH
Q 005481 212 PDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVI-SWSSLIL 290 (694)
Q Consensus 212 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~ 290 (694)
-|.+-+-.........|..+.|...+...+..-+ ..|.+-+....-..+.+.+..+-...+..+.. .=-.+..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P------~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP------WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC------cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHH
Confidence 3433333333344556667777777666655332 33333333333334444444444444432211 1112345
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCC--CchHHHHHhhhhhhcCCH
Q 005481 291 GYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGL--DTSVSNSIVDMYLKCGLI 368 (694)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~y~~~g~~ 368 (694)
+|....+.++++.-.......|+.-+...-+....+.-...++++|..+|+.+.+..+-. |..+|+.++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 565666778888877777777765554444444445566778899999999988874321 455665554222222222
Q ss_pred HH-HHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 369 DE-ATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 369 ~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
.- |..++ .+.+--+.|...+.+-|...++.++|...|++.++ +.|.. ..|+.+..-|....+...|.+-++.+++
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 21 22222 22333455666677788888999999999999998 55666 5788888889999999999999999987
Q ss_pred ccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchH
Q 005481 447 DKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNY 523 (694)
Q Consensus 447 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 523 (694)
+.| |-..|-.|..+|.-.+...-|+-+|+++ ..+| |...|.+|+..|.+.++.++|+..|++++.....+..+|
T Consensus 393 ---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 ---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 556 5678999999999999999999999998 5666 578899999999999999999999999999988888999
Q ss_pred HHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 524 VMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
..|+++|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=5.6e-11 Score=125.69 Aligned_cols=331 Identities=14% Similarity=0.126 Sum_probs=199.9
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHH
Q 005481 193 GYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARR 272 (694)
Q Consensus 193 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~ 272 (694)
|+.++|.+++.+..+... -+...|.+|...|-+.|+.+++...+-.+-...+ .|...|..+.+...+.|.++.|.-
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p---~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP---KDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcccHHHHHH
Confidence 777777777777766432 2445666666677777766666665544444443 444666667777777777777777
Q ss_pred HHhhcCCCChhhHH---HHHHHHHhCCCHHHHHHHHHHHHhcCCccCcc----chHHHHHHHhhhccHHHHHHHHHHHHh
Q 005481 273 VFDLIEQKSVISWS---SLILGYAQEENLAEAMELFRQLRERSLQVDGF----VLSSMMGVFADFALVEQGKQIHAYAAK 345 (694)
Q Consensus 273 ~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~i~~~~~~ 345 (694)
.|.+..+.++.-|- --+..|-+.|+...|+.-|.++.+...+.|.. +.-.++..+...+.-+.|.+++.....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77666543332232 23455666677777777777666642211111 111222223333333444433333222
Q ss_pred -cCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------
Q 005481 346 -VPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLD------------ 412 (694)
Q Consensus 346 -~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------ 412 (694)
.+-..+.. .++.++..|.+...++.|......+...
T Consensus 309 ~~~~~~~~e-------------------------------d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 309 KEKDEASLE-------------------------------DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred hcccccccc-------------------------------HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 11122233 3444555555555555555555444441
Q ss_pred ---------------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCC--ChhHHHHHHHHHHhcCChHHHHH
Q 005481 413 ---------------DVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKP--RIEHYSCIVDSLGRAGRLDEAKN 475 (694)
Q Consensus 413 ---------------g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 475 (694)
++.++...+. +.-+..+....+....+...... ..+.| +...|.-+.++|...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhccccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 1222322211 11122333333332223333333 44333 46789999999999999999999
Q ss_pred HHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCc
Q 005481 476 LIESMP---VKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLK 552 (694)
Q Consensus 476 ~~~~~~---~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 552 (694)
+|..+. .--+..+|--+...|...|.+++|.+.|++++.+.|++..+-..|+.+|...|+.++|.+.+..+..-+-+
T Consensus 436 ~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 436 LLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 999882 22246789999999999999999999999999999999999999999999999999999999987644444
Q ss_pred cCCceeEE
Q 005481 553 KVAGRSWV 560 (694)
Q Consensus 553 ~~~~~s~~ 560 (694)
+.++++|-
T Consensus 516 ~~e~~a~~ 523 (895)
T KOG2076|consen 516 NAEACAWE 523 (895)
T ss_pred chhhcccc
Confidence 44566664
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5.9e-09 Score=102.59 Aligned_cols=491 Identities=12% Similarity=0.088 Sum_probs=346.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhc
Q 005481 48 MLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASG 124 (694)
Q Consensus 48 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 124 (694)
..|-.....=-..+++..|+.+|++... ++...|-..+..=.++.....|..+++.....=...|.. |---+-.=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH
Confidence 3343333333446778889999998854 667778888888889999999999999887632222332 222233334
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCC--CCCcccHHHHHHHHHhcCChhHHHHHH
Q 005481 125 VLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMP--AKSLITWNAMIAGYVLAGYSDKGLLLF 202 (694)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 202 (694)
..|++..|+++|+.-.+ ..|+...|++.|++=.+...++.|+.++++.. .|++.+|--...-=.+.|+...|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56889999999998876 48999999999999999999999999998864 588889988888888899999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHc----ccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH-----
Q 005481 203 RKMQEHGEIPDEFTFTSTLKACG----SLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRV----- 273 (694)
Q Consensus 203 ~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~----- 273 (694)
....+. ..|...-..++.+++ +...++.|.-++..++..-+. +.....+..++..=-+-|+.......
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 887653 123333334444443 456678888899988877553 12245555555555555654333222
Q ss_pred ---HhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCc-------cchHHHHHHH---hhhccHHHHH
Q 005481 274 ---FDLIEQK---SVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDG-------FVLSSMMGVF---ADFALVEQGK 337 (694)
Q Consensus 274 ---f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~t~~~ll~~~---~~~~~~~~a~ 337 (694)
++.+... |-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222222 4568888888888889999999999998875 44422 1222221222 3567899999
Q ss_pred HHHHHHHhcCCCCCchHHHHHhhhhh----hcCCHHHHHHHHccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005481 338 QIHAYAAKVPSGLDTSVSNSIVDMYL----KCGLIDEATELFNEMP--VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLL 411 (694)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (694)
+++...++ -++....++..+=-+|+ ++.++..|.+++.... .|-..++-.-|..=.+.+.++.+..+|++.++
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999888 34456667666655555 6789999999998876 56777888888888899999999999999998
Q ss_pred CCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 005481 412 DDVEPD-GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIW 489 (694)
Q Consensus 412 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 489 (694)
- .|. ..+|......=...|+.+.|+.+|.-++....+.--...|-+.|+-=...|.++.|..+++.+ ...+...+|
T Consensus 466 ~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 466 F--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred c--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 4 454 478888777778889999999999999884433334556788888888999999999999987 444556688
Q ss_pred HHHHHHHH-----hcC-----------ChHHHHHHHHHHHc----CCCCCc--chHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 490 QTLLSACR-----VHG-----------DLELGREVGEILLR----LDGDNP--VNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 490 ~~ll~a~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
-++..--. +.+ +...|..+|+++.. .+|... ...-..-++=...|...+...+-+.|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 77765332 334 56678888888764 334221 122223344456677777777777665
Q ss_pred h
Q 005481 548 S 548 (694)
Q Consensus 548 ~ 548 (694)
+
T Consensus 624 k 624 (677)
T KOG1915|consen 624 K 624 (677)
T ss_pred H
Confidence 4
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1e-11 Score=127.22 Aligned_cols=274 Identities=15% Similarity=0.039 Sum_probs=214.3
Q ss_pred CHHHHHHHHhhcCC--CChh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C-ccCccchHHHHHHHhhhccHHHHHHHH
Q 005481 266 CLVEARRVFDLIEQ--KSVI-SWSSLILGYAQEENLAEAMELFRQLRERS-L-QVDGFVLSSMMGVFADFALVEQGKQIH 340 (694)
Q Consensus 266 ~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~pd~~t~~~ll~~~~~~~~~~~a~~i~ 340 (694)
+..+|...|..+++ .|+. ....+..+|...+++++|.++|+.+.+.. . .-+..+|+++|..+-+.- +...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 46789999988664 2433 33456788999999999999999998742 1 125567888776543321 11122
Q ss_pred H-HHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005481 341 A-YAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVK---NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP 416 (694)
Q Consensus 341 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 416 (694)
. .+++. -+..+.+|-++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 12222 2346889999999999999999999999998853 456888888888889999999999999886 666
Q ss_pred CH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005481 417 DG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTL 492 (694)
Q Consensus 417 d~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 492 (694)
.. ..|-.+...|.+.++++.|.-.|+.+.+ +.|. .....++...+-+.|+.|+|+++++++ ...| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 65 5788889999999999999999999977 7775 556778888999999999999999998 3333 33333334
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
...+...+++++|.+.++++.++-|++...|..++.+|-+.|+.+.|..-+..|.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 455667799999999999999999999999999999999999999999888877654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=9.1e-12 Score=127.67 Aligned_cols=244 Identities=15% Similarity=0.183 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCC--CCCchHHHHHhhhhhhcCCHHH-HHH
Q 005481 297 NLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPS--GLDTSVSNSIVDMYLKCGLIDE-ATE 373 (694)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~-A~~ 373 (694)
+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+... ..+..+|++.+--+-+.=.+.- |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999985443 344456777788899999999999999999987643 2266677766644332211111 222
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCC
Q 005481 374 LFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP-DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKP 452 (694)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 452 (694)
+.+ +....+.+|-++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.++. .
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 222 2244678999999999999999999999999998 677 557888888888888999999999998865 5
Q ss_pred ChhHHHH---HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHH
Q 005481 453 RIEHYSC---IVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMS 527 (694)
Q Consensus 453 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 527 (694)
+..+|++ |.-.|.++++++.|+-.|+++ .+.|. .++...++..+.+.|+.|+|++++++++-++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5566665 466799999999999999998 77776 455666777888999999999999999999999999999999
Q ss_pred hHHHhcCCchHHHHHHHHHHhC
Q 005481 528 NIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.++...+++++|.+.++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.8e-10 Score=110.69 Aligned_cols=244 Identities=15% Similarity=0.166 Sum_probs=161.9
Q ss_pred hCCCHHHHHHHHHHHHhcCC--ccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHH
Q 005481 294 QEENLAEAMELFRQLRERSL--QVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEA 371 (694)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 371 (694)
...++++|+.+|+++.+... --|..||+.++-.-.....+.---+....+- +.-+.+...+.+-|+-.++.++|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHH
Confidence 34556666666666555411 0134455555543322221111111111111 12334555666777777888888
Q ss_pred HHHHccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHhhc
Q 005481 372 TELFNEMPV---KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP-DGVAYLAVLSACSHSGLVEESQEYFSRLCND 447 (694)
Q Consensus 372 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 447 (694)
...|++..+ +....|+.|..-|....+...|++.+++.++ +.| |...|-.|..+|.-.+...-|+-+|+++.+
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~- 426 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE- 426 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-
Confidence 888887763 3455788888888888888888888888887 444 557888888888888888888888888876
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-------CCC
Q 005481 448 KRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLR-------LDG 517 (694)
Q Consensus 448 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-------~~p 517 (694)
++| |...|.+|.+.|.+.++.+||++.|... ....+...+..|...+-+.++.++|.+.+++-++ .+|
T Consensus 427 --~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 427 --LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred --cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 556 4678888888888888888888888876 2223446777888888888888888888888775 334
Q ss_pred CCcchHHHHHhHHHhcCCchHHHHHHHHH
Q 005481 518 DNPVNYVMMSNIHADAGSWNECERLRKLA 546 (694)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 546 (694)
.-..+..-|+.-+.+.++|++|..+-...
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 33344555777788888888887765544
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=8.4e-11 Score=122.80 Aligned_cols=288 Identities=11% Similarity=0.016 Sum_probs=185.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHH
Q 005481 192 AGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEAR 271 (694)
Q Consensus 192 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~ 271 (694)
.|+++.|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+...+ ............+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~--~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADN--DQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555443321111 112222233335556666666666666554322 22222223356677777777777
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCC
Q 005481 272 RVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPS 348 (694)
Q Consensus 272 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 348 (694)
..++.+.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 77777653 24556677778888888888888888888876543221 111000
Q ss_pred CCCchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005481 349 GLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVL 425 (694)
Q Consensus 349 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 425 (694)
...+..++....+..+.+...++++..+ ..++.....+..++...|+.++|.+++++..+. .||.... ++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 0011112222223344556666666665 347778888889999999999999999988873 4555221 23
Q ss_pred HHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHH
Q 005481 426 SACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLSACRVHGDLEL 504 (694)
Q Consensus 426 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a~~~~g~~~~ 504 (694)
.+....++.+++.+..+...+.+ +-|...+.++..++.+.|++++|.+.|+.+ ...|+...+..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 33445589999999999888733 234556888999999999999999999987 778999888889999999999999
Q ss_pred HHHHHHHHHcCC
Q 005481 505 GREVGEILLRLD 516 (694)
Q Consensus 505 a~~~~~~~~~~~ 516 (694)
|.+++++.+.+-
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.9e-09 Score=103.86 Aligned_cols=457 Identities=9% Similarity=0.040 Sum_probs=332.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 005481 80 SWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYS 159 (694)
Q Consensus 80 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~ 159 (694)
.|-....-=..++++..|..+|+..+... .-+...|.--+..=.+...+..|+.+++.++..-...| ..|-..+.|=-
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHH
Confidence 44444444455678889999999987643 22444555556666788899999999999998743333 34455666677
Q ss_pred hcCChHHHHHHHccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHH
Q 005481 160 KCGRINEAARMFDVMP--AKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIH 237 (694)
Q Consensus 160 ~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 237 (694)
..|++..|+++|++-. +|+..+|++.|..=.+....+.|..+|++..- +-|+..+|.--.+-=-+.|+...+.+++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7899999999998765 58999999999999999999999999999876 4599999998888888899999999999
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcC----CCC-hhhHHHHHHHHHhCCCHHHHHHH--------
Q 005481 238 GFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIE----QKS-VISWSSLILGYAQEENLAEAMEL-------- 304 (694)
Q Consensus 238 ~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~-~~~~~~li~~~~~~g~~~~A~~~-------- 304 (694)
..+++.--+...+..++.+....=.++..++.|.-+|.-.. ... ...|......--+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 99887532212455667777777778888999998886543 322 23444444444455554433332
Q ss_pred HHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCc-hHHHHHhh-----h---hhhcCCHHHHHHHH
Q 005481 305 FRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDT-SVSNSIVD-----M---YLKCGLIDEATELF 375 (694)
Q Consensus 305 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-~~~~~li~-----~---y~~~g~~~~A~~~~ 375 (694)
++.+... -.-|-.++--.+..-...|+.+..+++++.++..-.+.+. ..+.-.|- + =....+.+.+.++|
T Consensus 311 YE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333332 1336667777788888889999999999998875433221 11111111 1 12467888999999
Q ss_pred ccCCC---CChhh----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhcc
Q 005481 376 NEMPV---KNVVT----WTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDK 448 (694)
Q Consensus 376 ~~~~~---~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 448 (694)
+...+ ..-.| |-....--.++.+...|.+++...+ |..|-..+|...|..=.+.+.+|..+.+++..+.
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-- 465 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-- 465 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 76652 22333 4444444557789999999998877 6889999999999999999999999999999987
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchH
Q 005481 449 RMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESMPVKP----SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNY 523 (694)
Q Consensus 449 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 523 (694)
..| +..+|......=...|+.+.|..+|+-+-.+| -...|.+.+.--...|.++.|..+++++++..+.. ..+
T Consensus 466 -~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvW 543 (677)
T KOG1915|consen 466 -FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVW 543 (677)
T ss_pred -cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHH
Confidence 445 46678888888888999999999999874444 35678888888889999999999999999988864 366
Q ss_pred HHHHhHHH-----hcC-----------CchHHHHHHHHHH
Q 005481 524 VMMSNIHA-----DAG-----------SWNECERLRKLAR 547 (694)
Q Consensus 524 ~~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 547 (694)
...+.--. ..| ....|.++++.+.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 66655433 334 4567777777764
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=9.4e-11 Score=122.46 Aligned_cols=275 Identities=9% Similarity=0.052 Sum_probs=195.1
Q ss_pred cCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchH--HHHHHHhhhccHHHHHH
Q 005481 264 CGCLVEARRVFDLIEQK--S-VISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLS--SMMGVFADFALVEQGKQ 338 (694)
Q Consensus 264 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~ 338 (694)
.|+++.|++.+....+. + ...+-.......+.|+++.|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777776665442 1 222322233446777788888888777653 44543332 22445666777888888
Q ss_pred HHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHH
Q 005481 339 IHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNV-----------VTWTVIITGYGKHGLAKEAVGLFR 407 (694)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 407 (694)
.++.+.+.... ++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777766633 567777888888888888888888887763211 133344444444555666677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 005481 408 KMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS- 485 (694)
Q Consensus 408 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~- 485 (694)
.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....|+.+++++.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 345667888899999999999999999999877 34555322 233334559999999999887 44555
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 486 IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 486 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
...+.++...|...+++++|...++++++.+|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567888889999999999999999999999985 6678999999999999999999987654
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=3.3e-10 Score=119.03 Aligned_cols=290 Identities=12% Similarity=0.047 Sum_probs=172.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHH
Q 005481 190 VLAGYSDKGLLLFRKMQEHGEIPDEF-TFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLV 268 (694)
Q Consensus 190 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~ 268 (694)
...|+++.|.+.+.+..+. .|+.. .+.....+..+.|+.+.+.+.+..+.+.... ....+.-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~--~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN--DNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--CchHHHHHHHHHHHHCCCHH
Confidence 4578999999988877664 34433 3344455667778888888888887765543 33344445577777788888
Q ss_pred HHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHh
Q 005481 269 EARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAK 345 (694)
Q Consensus 269 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 345 (694)
.|...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+.. .+..+-.
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~-------------------- 229 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ-------------------- 229 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH--------------------
Confidence 88888777654 24556677777788888888888888887776533221 1110000
Q ss_pred cCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-
Q 005481 346 VPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAY- 421 (694)
Q Consensus 346 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~- 421 (694)
..+..+++.-......+...+.++..+. .+...+..++..+...|+.++|.+++++..+. .||....
T Consensus 230 -------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~ 300 (409)
T TIGR00540 230 -------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAIS 300 (409)
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccch
Confidence 0000111111112223444445555543 47777888888888888888888888888874 3444321
Q ss_pred --HHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHH
Q 005481 422 --LAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIES--M-PVKPSIAIWQTLLSAC 496 (694)
Q Consensus 422 --~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~a~ 496 (694)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 1111112334566667777766665332222223445666666666666666666662 2 4456666666666666
Q ss_pred HhcCChHHHHHHHHHHH
Q 005481 497 RVHGDLELGREVGEILL 513 (694)
Q Consensus 497 ~~~g~~~~a~~~~~~~~ 513 (694)
.+.|+.++|.+++++.+
T Consensus 381 ~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666666654
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=1.2e-10 Score=122.33 Aligned_cols=282 Identities=10% Similarity=0.070 Sum_probs=192.5
Q ss_pred HhcCChHHHHHHHccCCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHcccCCchHH
Q 005481 159 SKCGRINEAARMFDVMPAK--S-LITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEF--TFTSTLKACGSLGSVGGG 233 (694)
Q Consensus 159 ~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a 233 (694)
...|+++.|++.+.+..+. + ...+-.....+.+.|+++.|.+.|.+..+.. |+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999887653 2 2233444566778899999999999987643 4543 333346777889999999
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCCh---hhHHHH----HHHHHhCCCHHHHHHHHH
Q 005481 234 TQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSV---ISWSSL----ILGYAQEENLAEAMELFR 306 (694)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~l----i~~~~~~g~~~~A~~~~~ 306 (694)
...++.+.+..+ .+..+...+...|.+.|++++|.+.+..+.+..+ ..+..+ ..++...+..+++.+.+.
T Consensus 173 l~~l~~l~~~~P---~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMAP---RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999986 5678889999999999999999999998875422 222111 111121122222222332
Q ss_pred HHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC--CChh
Q 005481 307 QLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV--KNVV 384 (694)
Q Consensus 307 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~ 384 (694)
.+.... |+ ....++..+..++..+...|+.++|.+++++..+ ||..
T Consensus 250 ~~~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 250 NWWKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 222211 10 0112556666777777788888888887777663 3322
Q ss_pred h---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHH
Q 005481 385 T---WTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV---AYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYS 458 (694)
Q Consensus 385 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 458 (694)
. +..........++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.++|+.... ....|+...+.
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~ 374 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLA 374 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHH
Confidence 1 122222233457788888888887763 45554 455788889999999999999995333 33679988888
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 005481 459 CIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~~ 480 (694)
.+..++.+.|+.++|.+++++.
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999873
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.6e-09 Score=107.65 Aligned_cols=477 Identities=10% Similarity=-0.027 Sum_probs=269.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhc--cCCCCcccHHHHHHHHHhC
Q 005481 14 RLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDK--MLERNVVSWTALMCGFLQN 91 (694)
Q Consensus 14 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~ 91 (694)
-+..+++-+.....+..|.-+-+.+...+ .|+..---+..+|.-.|+.+.|..+... +.+.|..+.......+.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 35555555555556666666666666555 3334444566777777888877776654 4667888888888899999
Q ss_pred CChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005481 92 GNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMF 171 (694)
Q Consensus 92 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f 171 (694)
.++++|+.++..-. +.-+...|-..=. +..-+.+.+...+.. ......+-.-...|......++|+..|
T Consensus 96 k~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~------~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 96 KEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMI------NLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred HHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccc------cchhceeeeeeehhhhhccHHHHHHHH
Confidence 99999998887321 1111111100000 000001111100000 000111111112344455666666666
Q ss_pred ccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCChhhHHHHHHHHc-ccCCchHHHHHHHHHHHhCCC
Q 005481 172 DVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHG----EIPDEFTFTSTLKACG-SLGSVGGGTQIHGFLITSGFP 246 (694)
Q Consensus 172 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~-~~~~~~~a~~~~~~~~~~g~~ 246 (694)
.+..-.|+..+.++...-. .. .-.+.+.|+.+.... .+-+......+..... +..+.+.... -....-.+..
T Consensus 165 ~~Al~~D~~c~Ea~~~lvs-~~-mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r-~~~~sl~~l~ 241 (611)
T KOG1173|consen 165 KEALLADAKCFEAFEKLVS-AH-MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR-NEDESLIGLA 241 (611)
T ss_pred HHHHhcchhhHHHHHHHHH-HH-hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc-Cchhhhhhhh
Confidence 6655555554444332111 11 111111122221110 0011111111111110 0000000000 0000000111
Q ss_pred CCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHH
Q 005481 247 YSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSV---ISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSM 323 (694)
Q Consensus 247 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 323 (694)
.++.+.....+-+...+++.+..++++.+.+.|+ ..+..-|..+...|+..+-+.+=.+|.+.
T Consensus 242 --~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------------ 307 (611)
T KOG1173|consen 242 --ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------------ 307 (611)
T ss_pred --hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh------------
Confidence 2333333344444444555555555544443222 22333334444444444444443343332
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCHH
Q 005481 324 MGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVK---NVVTWTVIITGYGKHGLAK 400 (694)
Q Consensus 324 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 400 (694)
.+..+.+|-++.-.|.-.|+..+|++.|.+...- -...|-.....|+-.|..+
T Consensus 308 ------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 308 ------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred ------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHH
Confidence 2234556666776777778888888888876532 3458999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIES 479 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 479 (694)
+|+..+...-+. ++-....+.-+.--|...++.+.|.++|.++.. +.|+ +...+-+.-+....+.+.+|..+|+.
T Consensus 364 QAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 364 QAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 999998887763 111223344455568889999999999999865 6664 55677777777788999999999887
Q ss_pred C--C------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 480 M--P------VKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 480 ~--~------~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
. + .++ -..+|+.|+.+|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+++.|...+.+..-
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 5 1 111 2456888899999999999999999999999999999999999999999999999999987753
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=8.7e-10 Score=107.48 Aligned_cols=435 Identities=11% Similarity=0.067 Sum_probs=262.7
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHH-HHHHhcccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHH
Q 005481 85 MCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLST-NIKASGVLSSVENGMQIHGMCMKSGFEWN----PVVGNSIIDMYS 159 (694)
Q Consensus 85 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~y~ 159 (694)
.+-|..+....+|+..|+-+.+...-||.-.+-. +-+.+.+.+.+..|...+...+..-...+ +.+.+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3455566677788888887777766666544322 22345566677777777777766532222 123344444566
Q ss_pred hcCChHHHHHHHccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHH
Q 005481 160 KCGRINEAARMFDVMPA--KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIH 237 (694)
Q Consensus 160 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 237 (694)
+.|++++|...|+...+ |+..+--.|+-++..-|+.++..+.|.+|..-...||..-|.. ...+
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~dd-------- 353 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKDD-------- 353 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcCC--------
Confidence 67777777777766543 4544433344444455667777777777766544444443321 0000
Q ss_pred HHHHHhCCCCCcchhhHHHHH-----HHHHHcC--CHHHH----HHHHhhcCCCChh---hHH-----------------
Q 005481 238 GFLITSGFPYSVKTVIAGSLV-----DFYVKCG--CLVEA----RRVFDLIEQKSVI---SWS----------------- 286 (694)
Q Consensus 238 ~~~~~~g~~~~~~~~~~~~li-----~~y~~~g--~~~~A----~~~f~~~~~~~~~---~~~----------------- 286 (694)
|+....|.-+ .-.-+.. +.+++ .++..-+..++.. -|.
T Consensus 354 -----------p~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 354 -----------PDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred -----------cchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 1111111111 0111111 11111 1111111222210 011
Q ss_pred -HHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHH--HHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhh
Q 005481 287 -SLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSS--MMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYL 363 (694)
Q Consensus 287 -~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~--ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 363 (694)
.-...|.++|+++.|+++++-..+..-+.-+..-+. .+.-.-.-.++-.|.+.-+.++...- .+....+.-.+.-.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceee
Confidence 112357899999999999988876533222222222 22222223356666666655544321 12222222233345
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 005481 364 KCGLIDEATELFNEMPVKNVVTWTVII---TGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEY 440 (694)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 440 (694)
..|++++|.+.+++....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 679999999999999877765444443 3466789999999999887652 234556777888889999999999999
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 441 FSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-P-VKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 441 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
+-+... -++.|+...+.|.++|-+.|+-..|.+..-.. . ++-+..+..-|..-|....-.+.++..++++--+.|+
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 988755 24446788999999999999999999875443 3 3345555555666666667789999999999999998
Q ss_pred CcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 519 NPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
...--..++.++.+.|++..|..+++..-.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 655555566788899999999999998754
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.5e-12 Score=129.78 Aligned_cols=250 Identities=19% Similarity=0.197 Sum_probs=103.7
Q ss_pred HHHHHHHcCCHHHHHHHHhhc-C----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhc
Q 005481 257 LVDFYVKCGCLVEARRVFDLI-E----QKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFA 331 (694)
Q Consensus 257 li~~y~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 331 (694)
+..++.+.|++++|.++++.. . ..|...|..+.......+++++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 455566666666666666432 1 124445555555555666677777777776654322 33334444444 5666
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC-----CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005481 332 LVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP-----VKNVVTWTVIITGYGKHGLAKEAVGLF 406 (694)
Q Consensus 332 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 406 (694)
+++.|.++.....+.. +++..+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665544433 344555667777888888888888877743 346778888888999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005481 407 RKMLLDDVEPD-GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP 484 (694)
Q Consensus 407 ~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 484 (694)
++.++ ..|+ ......++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|+..+++. ...|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99998 5676 4667788888899999999999888887732 455667888999999999999999999987 3344
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 005481 485 -SIAIWQTLLSACRVHGDLELGREVGEILLR 514 (694)
Q Consensus 485 -~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 514 (694)
|+.+...+..++...|+.++|.++.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 666777888899999999999999888765
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.7e-09 Score=101.52 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=167.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhC-CCCCcchhhHHHHHHHHHHcCCHHH
Q 005481 191 LAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSG-FPYSVKTVIAGSLVDFYVKCGCLVE 269 (694)
Q Consensus 191 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~~~li~~y~~~g~~~~ 269 (694)
-+.++++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|+.+.++- ........+...|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999998732 1223355567788889999999999999988763 2111234566678888999999999
Q ss_pred HHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccc----hHHHHHHHhhhccHHHHHHHHHH
Q 005481 270 ARRVFDLIEQKSV---ISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFV----LSSMMGVFADFALVEQGKQIHAY 342 (694)
Q Consensus 270 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~~~~~~~~~~~a~~i~~~ 342 (694)
|+.+|..+.+.+. .+.-.|+..|.+..+|++|++.-+++...+-++..+- |.-+........+++.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999887544 4566688999999999999999998888665544322 22222222333344444444444
Q ss_pred HHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005481 343 AAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYL 422 (694)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 422 (694)
+.+.+.. .+...-. +...+...|++..|++.++...+.+..--..+..
T Consensus 206 Alqa~~~-cvRAsi~-------------------------------lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 206 ALQADKK-CVRASII-------------------------------LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHhhCcc-ceehhhh-------------------------------hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 4433222 1222222 3344555566666666666665543222223455
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc--
Q 005481 423 AVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLI-ESMPVKPSIAIWQTLLSACRVH-- 499 (694)
Q Consensus 423 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~a~~~~-- 499 (694)
.|..+|.+.|+.+++...+..+.+ ..++...-..|.+.-....-.+.|...+ +...-+|+...+..|+..-...
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence 555566666666666666666555 2333333344444443333344444433 3334556666666666543222
Q ss_pred -CChHHHHHHHHHHH
Q 005481 500 -GDLELGREVGEILL 513 (694)
Q Consensus 500 -g~~~~a~~~~~~~~ 513 (694)
|...+-...++.++
T Consensus 331 eg~~k~sL~~lr~mv 345 (389)
T COG2956 331 EGRAKESLDLLRDMV 345 (389)
T ss_pred ccchhhhHHHHHHHH
Confidence 23334444444444
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=2.8e-07 Score=94.40 Aligned_cols=432 Identities=12% Similarity=0.140 Sum_probs=233.3
Q ss_pred hcCCChHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 005481 23 SKNLLLDYGVQLHGALVKM-GFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLF 101 (694)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 101 (694)
...+++..-+..|+..+.. .+.-...+|.-.+......|-++-+.+++++-.+-++..-+..|..++..+++++|-+.+
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHH
Confidence 3344444444444444332 222233444445555455555555555555554444444445555555555555555555
Q ss_pred HHhhhCC------CCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhcCChHHHHHHH
Q 005481 102 CQMGSSS------VKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGF--EWN--PVVGNSIIDMYSKCGRINEAARMF 171 (694)
Q Consensus 102 ~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~ll~~y~~~g~~~~A~~~f 171 (694)
....... -+.+...|..+-...++..+.-.... .+.+++.|+ -+| -..|++|.+-|.+.|+++.|..+|
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5443211 11122223333333222222111111 111222232 223 246888888899999999999888
Q ss_pred ccCCCC--CcccHHHHHHHHHhc----------------CC------hhHHHHHHHHHHHCCCC----------C-Chhh
Q 005481 172 DVMPAK--SLITWNAMIAGYVLA----------------GY------SDKGLLLFRKMQEHGEI----------P-DEFT 216 (694)
Q Consensus 172 ~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~~----------p-~~~t 216 (694)
++.... .+.-++.+-..|++- |+ ++-.+.-|+.+...... | +..+
T Consensus 272 eeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e 351 (835)
T KOG2047|consen 272 EEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE 351 (835)
T ss_pred HHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence 775542 222233333333321 11 11222333333322110 1 1112
Q ss_pred HHHHHHHHcccCCchHHHHHHHHHHHhCCC---CCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCCh-------hhHH
Q 005481 217 FTSTLKACGSLGSVGGGTQIHGFLITSGFP---YSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSV-------ISWS 286 (694)
Q Consensus 217 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~ 286 (694)
|..-+. ...|+..+....+.++++.--+ +..-...|..+.+.|-..|+++.|+.+|++..+-+- .+|.
T Consensus 352 W~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 352 WHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred HHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 222111 2235556666677777664211 123446788999999999999999999998765332 3566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCccC-----------------ccchHHHHHHHhhhccHHHHHHHHHHHHhcCCC
Q 005481 287 SLILGYAQEENLAEAMELFRQLRERSLQVD-----------------GFVLSSMMGVFADFALVEQGKQIHAYAAKVPSG 349 (694)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----------------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 349 (694)
.-...=.+..+++.|+++.+....-.-.|. ...|+..+..--..|-++..+.+++.++...+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 656666678889999998887654211111 112333344444567788888888888887665
Q ss_pred CCchHHHHHhhhhhhcCCHHHHHHHHccCC----CCChh-hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005481 350 LDTSVSNSIVDMYLKCGLIDEATELFNEMP----VKNVV-TWTVIITGYGK---HGLAKEAVGLFRKMLLDDVEPDGVAY 421 (694)
Q Consensus 350 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~ 421 (694)
. +.+.-...-.+-...-++++.+++++-. -|++. .|++-+.-+.+ ....+.|..+|++.++ |.+|...-+
T Consensus 510 T-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt 587 (835)
T KOG2047|consen 510 T-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT 587 (835)
T ss_pred C-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 3 3322223334455677889999998765 35553 78887766654 2358899999999998 777776544
Q ss_pred HHHHHHH--HccCcHHHHHHHHHHHhhccCCCCC--hhHHHHHH
Q 005481 422 LAVLSAC--SHSGLVEESQEYFSRLCNDKRMKPR--IEHYSCIV 461 (694)
Q Consensus 422 ~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li 461 (694)
.-|+-|- ..-|....|+.+++++.. ++.+. ...|+..|
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 4444332 345888888888888765 23332 33455544
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.9e-10 Score=111.37 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=164.6
Q ss_pred CchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005481 351 DTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSA 427 (694)
Q Consensus 351 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 427 (694)
....+..+...|.+.|++++|.+.|++.. ..+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34566778888999999999999998765 2356788889999999999999999999998853 2345677788888
Q ss_pred HHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 005481 428 CSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELG 505 (694)
Q Consensus 428 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a 505 (694)
+...|++++|.+.++.+.+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873222234567788899999999999999999987 3344 466788888899999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 506 REVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 506 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887754
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=1.3e-09 Score=114.84 Aligned_cols=444 Identities=12% Similarity=0.065 Sum_probs=229.3
Q ss_pred CCCCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 005481 74 LERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNS 153 (694)
Q Consensus 74 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 153 (694)
..||.+||..+|.-|+..|+.+.|- +|..|.-.....+...|+.++.+....++.+.++ .|.+.+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 3467777888888787777777777 7777776666667777777777777777766655 566777788
Q ss_pred HHHHHHhcCChHH---HHHHHccCCC-------CCc---------------ccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005481 154 IIDMYSKCGRINE---AARMFDVMPA-------KSL---------------ITWNAMIAGYVLAGYSDKGLLLFRKMQEH 208 (694)
Q Consensus 154 ll~~y~~~g~~~~---A~~~f~~~~~-------~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 208 (694)
|...|...|++.. .++.+..+.. ... ..-...|.-.+-.|.++.+++++..|...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 8888887777554 2221111110 000 00111222333344444444444444221
Q ss_pred CCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCCh-----h
Q 005481 209 GEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSV-----I 283 (694)
Q Consensus 209 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----~ 283 (694)
.- +. ++..+++-+.... .-.+++........-. ++..++.++++.-.-.|+++.|..++.+|.+++. .
T Consensus 169 a~--~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~--~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 169 AW--NA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEA--PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred cc--cc-hHHHHHHHhccCC--chHHHHHHHHHHhhcC--CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 10 00 1111233332222 2223333322222112 5666677777777777777777777777765432 2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhh
Q 005481 284 SWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYL 363 (694)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 363 (694)
.|-.++. .++...+..+++-|+..|+.|++.|+..-+..+...|....+.... ......+..++.++..+..
T Consensus 242 FwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s----q~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 242 FWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS----QLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred chhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc----chhhhhhHHHHHHHhcccH
Confidence 2333322 5666666777777777777777777776666666544422222111 0000111222333333211
Q ss_pred hcCCHHH--HHHHHccCC-------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH-HHHHHHHHHHHcc
Q 005481 364 KCGLIDE--ATELFNEMP-------VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLD--DVEPDG-VAYLAVLSACSHS 431 (694)
Q Consensus 364 ~~g~~~~--A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~-~t~~~ll~a~~~~ 431 (694)
...+++. +.-+....+ .....+|. ++.-....|..++..++-..|..- ...|+. ..|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1111111 111111111 11223443 333344468888888888877642 233433 3455555544332
Q ss_pred Cc--H-------HHHHHH----------HHHHhhccCCCCCh----------------------------hHHHHHHHHH
Q 005481 432 GL--V-------EESQEY----------FSRLCNDKRMKPRI----------------------------EHYSCIVDSL 464 (694)
Q Consensus 432 g~--~-------~~a~~~----------~~~m~~~~~~~p~~----------------------------~~~~~li~~~ 464 (694)
-. . .++.+. -+.+. ...||. ..-+.++..+
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~---~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLE---NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH---HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 11 0 011111 00000 011211 1123344444
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC---CCcchHHHHHhHHHhcCCchHHHH
Q 005481 465 GRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDG---DNPVNYVMMSNIHADAGSWNECER 541 (694)
Q Consensus 465 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~ 541 (694)
.+.-+..+++...++....--...|..|+.-|..+...+.|.....+....+. -+..-+..+.+++.+.+...++..
T Consensus 470 ~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 44445555554443331111125678888888999999999888888765442 134567889999999999999999
Q ss_pred HHHHHHh
Q 005481 542 LRKLARS 548 (694)
Q Consensus 542 ~~~~m~~ 548 (694)
+.+.+.+
T Consensus 550 iL~e~ks 556 (1088)
T KOG4318|consen 550 ILYEDKS 556 (1088)
T ss_pred HHhhhhH
Confidence 9999876
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=8.4e-09 Score=100.05 Aligned_cols=285 Identities=14% Similarity=0.100 Sum_probs=180.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHH
Q 005481 192 AGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEAR 271 (694)
Q Consensus 192 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~ 271 (694)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-+.+.++.+.-.. ++..+.-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~--~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD--DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHhCCCchhHH
Confidence 577888888877766665443 234555666777778888888888877776443 66777777777888888888887
Q ss_pred HHHhhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCC
Q 005481 272 RVFDLIE---QKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPS 348 (694)
Q Consensus 272 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 348 (694)
.-.+++. .+++........+|.+.|++.+...++..|.+.|+--|+.. .++
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l--------- 227 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL--------- 227 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH---------
Confidence 7766543 45667788888889999999999999999888876544211 111
Q ss_pred CCCchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005481 349 GLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVL 425 (694)
Q Consensus 349 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 425 (694)
...+++.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|...+ +
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----H
Confidence 11223333333333333344444556555 23555666677778888888888888888888777776222 2
Q ss_pred HHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHH
Q 005481 426 SACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLSACRVHGDLEL 504 (694)
Q Consensus 426 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a~~~~g~~~~ 504 (694)
-.+.+.++...-++..+...+..+-.| ..+.+|...|.+.+.+.+|.+.|+.. +.+|+...|+-+..++-+.|+.++
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 245566666666666666555444444 44555556666666666666666544 555555556655556666666666
Q ss_pred HHHHHHHHH
Q 005481 505 GREVGEILL 513 (694)
Q Consensus 505 a~~~~~~~~ 513 (694)
|.+..++.+
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 655555554
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=8.4e-08 Score=91.19 Aligned_cols=471 Identities=14% Similarity=0.113 Sum_probs=243.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHH
Q 005481 20 RCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTALMCGFLQNGNAKA 96 (694)
Q Consensus 20 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 96 (694)
.-+...+++..|..+++.-...+-.-...+---+...|-..|++++|..++..+.+ ++...|-.|.-++.-.|.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 33445566666766666554333111111111223345566777777777766533 344455555555555666666
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC
Q 005481 97 CLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA 176 (694)
Q Consensus 97 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~ 176 (694)
|..+-....+ +..--..++...-+.++-++-..+|+.+... ..-.-+|.++.--.-++.+|.+++.++..
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666544322 1112223334444556666666666655432 12233444444444467777777777664
Q ss_pred C--CcccHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccC--CchHHHHHHHHHHHhCCCCCcch
Q 005481 177 K--SLITWNAMI-AGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLG--SVGGGTQIHGFLITSGFPYSVKT 251 (694)
Q Consensus 177 ~--~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~ 251 (694)
. +-...|.-+ -+|.+..-++-+.+++.--.+. -||+ |+..=+.+|..-. +-..+.+-...+...+-. .-
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~- 253 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQ--EY- 253 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--cc-
Confidence 3 333444433 4566666677777766665543 1333 2333333333211 111222222222222211 00
Q ss_pred hhHHHHHHHHHHcC-----CHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHH
Q 005481 252 VIAGSLVDFYVKCG-----CLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGV 326 (694)
Q Consensus 252 ~~~~~li~~y~~~g-----~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 326 (694)
..+.-.++.+ .-+.|++++-.+.+.=+.+--.|+--|.+.++..+|..+.+++.. ..|-......+..+
T Consensus 254 ----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a 327 (557)
T KOG3785|consen 254 ----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA 327 (557)
T ss_pred ----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH
Confidence 0111122211 123344443332222222333455567788888888888776532 12322222222221
Q ss_pred H-----hhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHH
Q 005481 327 F-----ADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKE 401 (694)
Q Consensus 327 ~-----~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 401 (694)
. .....+.-|.+.+...-.++...| ++.--.+|.+.+.-..++++
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecD------------------------------TIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECD------------------------------TIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccc------------------------------cccchHHHHHHHHHHHHHHH
Confidence 1 111223344444444333333222 22233455556666666777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhC
Q 005481 402 AVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHY-SCIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 402 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~ 480 (694)
.+..++....-- ..|..--..+..|....|.+.+|.++|-.+.. ..++ |..+| ..|...|.+.|+++-|++++-++
T Consensus 378 Vl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 378 VLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 777776666542 33333334567788888999999998877744 2222 33344 44567888999999999999888
Q ss_pred CCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCC
Q 005481 481 PVKPSIAIWQTLLS-ACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVA 555 (694)
Q Consensus 481 ~~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 555 (694)
..+.+..+.-.++. -|.+.+.+--|-++|..+-.++|. |+.| .|+-....-++..+....-++.|
T Consensus 455 ~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 455 NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc---------CCccchHHHHHHHHHcCCCCCCc
Confidence 65556666555554 688999998888999988888886 4444 24444455566655544333333
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=8.4e-12 Score=87.25 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=47.7
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcc
Q 005481 76 RNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGV 125 (694)
Q Consensus 76 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 125 (694)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=5.7e-08 Score=101.74 Aligned_cols=401 Identities=16% Similarity=0.135 Sum_probs=259.9
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh-H
Q 005481 142 SGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA---KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFT-F 217 (694)
Q Consensus 142 ~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 217 (694)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999988764 2456799999999999999999999988765443454444 3
Q ss_pred HHHHHHHc-ccCCchHHHHHHHHHHHh--CCCCCcchhhHHHHHHHHHHcC-----------CHHHHHHHHhhcCC---C
Q 005481 218 TSTLKACG-SLGSVGGGTQIHGFLITS--GFPYSVKTVIAGSLVDFYVKCG-----------CLVEARRVFDLIEQ---K 280 (694)
Q Consensus 218 ~~ll~a~~-~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~~~~---~ 280 (694)
...-+.|. +.+..+++..+-..++.. +.........+..+.-+|...- ...++...+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334444 346677777766666652 2111133444555555554321 23345555665532 2
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhc-CCCCCchHHHHHh
Q 005481 281 SVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKV-PSGLDTSVSNSIV 359 (694)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li 359 (694)
|+.+-.-+.--|+..++.+.|++..++...-+-.-+...+..+.-.++..+++..|..+.+..... |....... .-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--GKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--hhh
Confidence 332222333456677889999999999888765667777777777788888899998888765542 22111100 011
Q ss_pred hhhhhcCCHHHHHHHHccC--------------------------C----C-CChh-hHHHHHHHHHhcCCHHHHHHHHH
Q 005481 360 DMYLKCGLIDEATELFNEM--------------------------P----V-KNVV-TWTVIITGYGKHGLAKEAVGLFR 407 (694)
Q Consensus 360 ~~y~~~g~~~~A~~~~~~~--------------------------~----~-~~~~-~~~~li~~~~~~g~~~~A~~~~~ 407 (694)
..-...++.++|......+ . + .+.. ++..+ .+... -+.+.+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc
Confidence 1111234444443332221 1 0 1111 11111 11111 11111100000
Q ss_pred HHHHCCCCCCH--------HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 005481 408 KMLLDDVEPDG--------VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIE 478 (694)
Q Consensus 408 ~m~~~g~~pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 478 (694)
|...-+.|+. ..|......+...+..++|...+.++.+ +.| ....|.-....+...|.++||.+.|.
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111122222 1244555677888999999988888865 444 35567777888999999999999988
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 479 SM-PVKPS-IAIWQTLLSACRVHGDLELGRE--VGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 479 ~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
.. .+.|+ +.+..++...+...|+...|.. +...+++++|.++.+|..++.++.+.|+.++|.+.|.......
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 77 67776 5678888889999999988888 9999999999999999999999999999999999999887643
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8e-08 Score=93.28 Aligned_cols=302 Identities=11% Similarity=0.019 Sum_probs=216.9
Q ss_pred CChhhHHHHHHHHcc--cCCchHHHHHHHHHHHh-CCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHH-
Q 005481 212 PDEFTFTSTLKACGS--LGSVGGGTQIHGFLITS-GFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSS- 287 (694)
Q Consensus 212 p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~- 287 (694)
|+..+...-+.++++ .++-..+.+.+..+... .++ .++....++.+.|...|+.++|...|++..--|+.+..+
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr--~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLR--CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCC--ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 444444444554443 34444455555544443 344 788899999999999999999999999876544433332
Q ss_pred --HHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhc
Q 005481 288 --LILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKC 365 (694)
Q Consensus 288 --li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 365 (694)
..-.+.+.|++++...+...+.... +-...-|..-+...-...+++.|..+-+..++.... +...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 2334567888988888888776532 112222333333444567788888877777765433 333333334566778
Q ss_pred CCHHHHHHHHccCC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc-cCcHHHHHHH
Q 005481 366 GLIDEATELFNEMP--V-KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVL-SACSH-SGLVEESQEY 440 (694)
Q Consensus 366 g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~ 440 (694)
|+.++|.-.|+... . -+..+|..|+.+|...|++.+|..+-+..... +..+..+...+. ..|.- ...-++|..+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999998765 3 47889999999999999999999888776653 344556665553 34432 3345789999
Q ss_pred HHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 441 FSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 441 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
+++..+ ++|+ ....+.+..++.+.|+.+++..++++. ...||....+.|...++..+.+++|...|..++.++|+
T Consensus 427 ~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 998876 6787 456778889999999999999999987 77899999999999999999999999999999999998
Q ss_pred Ccc
Q 005481 519 NPV 521 (694)
Q Consensus 519 ~~~ 521 (694)
+..
T Consensus 504 ~~~ 506 (564)
T KOG1174|consen 504 SKR 506 (564)
T ss_pred chH
Confidence 744
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.8e-11 Score=84.58 Aligned_cols=50 Identities=32% Similarity=0.595 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005481 381 KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSH 430 (694)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 430 (694)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=2.8e-09 Score=110.89 Aligned_cols=230 Identities=17% Similarity=0.153 Sum_probs=166.6
Q ss_pred cchHHHHHHHhhhccHHHHHHHHHHHHhc-----CC-CCCc-hHHHHHhhhhhhcCCHHHHHHHHccCCC----------
Q 005481 318 FVLSSMMGVFADFALVEQGKQIHAYAAKV-----PS-GLDT-SVSNSIVDMYLKCGLIDEATELFNEMPV---------- 380 (694)
Q Consensus 318 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~---------- 380 (694)
.|+..+...|...|+++.|..++...++. |. .+.+ ...+.+..+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666667777777777766655443 21 1111 1223466788889999999888887751
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccC--C
Q 005481 381 K-NVVTWTVIITGYGKHGLAKEAVGLFRKMLL-----DDVE-PDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKR--M 450 (694)
Q Consensus 381 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 450 (694)
| -..+++.|...|...|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234778888899999999998888777654 2222 222 2466777789999999999999998766443 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc--
Q 005481 451 KPR----IEHYSCIVDSLGRAGRLDEAKNLIESM---------PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLR-- 514 (694)
Q Consensus 451 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-- 514 (694)
.++ ..+++.|...|...|+++||+++++++ ...+. ....+.|..+|.+.++++.|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 457999999999999999999999887 11222 34577888899999999999998887764
Q ss_pred --CCCCC---cchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 515 --LDGDN---PVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 515 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
..|++ ..+|..|+.+|.+.|++++|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34544 4678899999999999999999988875
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.4e-08 Score=93.93 Aligned_cols=310 Identities=13% Similarity=0.084 Sum_probs=198.9
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC-CCh------hhHHHHHHHHHhCCCHH
Q 005481 227 LGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ-KSV------ISWSSLILGYAQEENLA 299 (694)
Q Consensus 227 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~ 299 (694)
..+.++|...|-+|.+... .+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||. .+.-.|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~---~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP---ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCc---hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3567777777777777544 4556666777788888888888887777654 332 22334556677777777
Q ss_pred HHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC
Q 005481 300 EAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP 379 (694)
Q Consensus 300 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 379 (694)
.|..+|..+.+.|.- -......++..|-...++++|..+-....+.+..+... -+..
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq------------------- 181 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ------------------- 181 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH-------------------
Confidence 777777777664311 11223334444444444444444444333333221100 0111
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHH
Q 005481 380 VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYS 458 (694)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 458 (694)
.|--+...+....+.+.|..++.+..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+ .+..--.++..
T Consensus 182 -----fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~ 253 (389)
T COG2956 182 -----FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLE 253 (389)
T ss_pred -----HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHH
Confidence 2344556666778899999999999884 45553 334566778889999999999999987 32222356788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHH--HhcCC
Q 005481 459 CIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIH--ADAGS 535 (694)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~ 535 (694)
.|..+|...|+.++...++.++ ...+....-..+-..-....-.+.|...+.+-+...|+-...|-.+-.-. +..|+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 8999999999999999999887 44555555555555444445567788888888888897545554443333 34567
Q ss_pred chHHHHHHHHHHhCCCccCCceeEEEECCEEEEEE
Q 005481 536 WNECERLRKLARSKGLKKVAGRSWVEVDKEIHFFY 570 (694)
Q Consensus 536 ~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~ 570 (694)
+.+..-+++.|....++..|.+..-.-+-..|.|.
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 99999999999887777777655544444445553
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=1.2e-06 Score=89.89 Aligned_cols=488 Identities=11% Similarity=0.114 Sum_probs=304.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhccCC-----CCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHH
Q 005481 47 LMLNNDLIDMYAKCGEMNGACAVFDKMLE-----RNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIK 121 (694)
Q Consensus 47 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 121 (694)
+.+|-..+....++|++...+..|++... .....|...+.-....+-++-++.++++.++- .|. .-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 35566667777889999999999988643 24456999999999999999999999998763 443 3566677
Q ss_pred HhcccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHHccCCCC--C--cccHHHHHHH
Q 005481 122 ASGVLSSVENGMQIHGMCMKSG------FEWNPVVGNSIIDMYSKCGRI---NEAARMFDVMPAK--S--LITWNAMIAG 188 (694)
Q Consensus 122 a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~ll~~y~~~g~~---~~A~~~f~~~~~~--~--~~~~~~li~~ 188 (694)
.++..+++++|.+.+..++... .+.+...|.-+.+..++.-+. -....+++.+..+ | -..|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888899999999888876431 244555677666666655332 2334455555443 3 3479999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCC----------------------chHHHHHHHHHHHhCCC
Q 005481 189 YVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGS----------------------VGGGTQIHGFLITSGFP 246 (694)
Q Consensus 189 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~----------------------~~~a~~~~~~~~~~g~~ 246 (694)
|.+.|.+++|.++|++-...-. ...-|+.+.++|++-.. ++....-++.+...++.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 9999999999999998766422 33345555555543211 12222333333332211
Q ss_pred C---------CcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC---C------ChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005481 247 Y---------SVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---K------SVISWSSLILGYAQEENLAEAMELFRQL 308 (694)
Q Consensus 247 ~---------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (694)
. ..++..|..-+.. ..|+..+-...|.+... | -...|..+...|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 0 0112222222221 23444455555544321 1 1246888999999999999999999887
Q ss_pred HhcCCccCccchHHHHHHH-------hhhccHHHHHHHHHHHHhcCCC-----------C------CchHHHHHhhhhhh
Q 005481 309 RERSLQVDGFVLSSMMGVF-------ADFALVEQGKQIHAYAAKVPSG-----------L------DTSVSNSIVDMYLK 364 (694)
Q Consensus 309 ~~~g~~pd~~t~~~ll~~~-------~~~~~~~~a~~i~~~~~~~~~~-----------~------~~~~~~~li~~y~~ 364 (694)
.+- +-.+..-|-... .+..+++.|..+.+.+....-. + +..+|+.+++.--.
T Consensus 414 ~~V----~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 414 TKV----PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred hcC----CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 653 222333333322 3445677777776665432211 1 23355566666667
Q ss_pred cCCHHHHHHHHccCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---ccCcHHHH
Q 005481 365 CGLIDEATELFNEMPVKNVVTWTV---IITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACS---HSGLVEES 437 (694)
Q Consensus 365 ~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~---~~g~~~~a 437 (694)
.|-++....+++++.+--+.|=.. ...-+-.+.-++++.++|++-+..=--|+. ..|+..|.-+. ....++.|
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 888888888888887432222111 122344567788999888876654334665 34555555443 23478999
Q ss_pred HHHHHHHhhccCCCCChh--HHHHHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHH
Q 005481 438 QEYFSRLCNDKRMKPRIE--HYSCIVDSLGRAGRLDEAKNLIESM--PVKPS--IAIWQTLLSACRVHGDLELGREVGEI 511 (694)
Q Consensus 438 ~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~ 511 (694)
+.+|+++.+ +.+|... .|-.....=-+-|....|+++++++ .+++. ...|+..|.--...=-+..-..+|++
T Consensus 570 RdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999987 4555422 1222223333568889999999998 34443 33577777633322224556789999
Q ss_pred HHcCCCCCcc--hHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 512 LLRLDGDNPV--NYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 512 ~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
+++.-|++.. ...-.+++=.+.|..+.|+.++..-.+
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9998887533 333457778899999999999887654
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.3e-07 Score=90.43 Aligned_cols=286 Identities=14% Similarity=0.039 Sum_probs=188.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 005481 179 LITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLV 258 (694)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li 258 (694)
+...-.-..-+...+++.+.+++++...+.. ++....+..-|..+...|+..+-..+-..+++.-+ ....+|-++.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP---~~a~sW~aVg 319 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP---SKALSWFAVG 319 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC---CCCcchhhHH
Confidence 3344444556677889999999999987753 34555555556677777877776666667776655 6778888999
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHH
Q 005481 259 DFYVKCGCLVEARRVFDLIEQKS---VISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQ 335 (694)
Q Consensus 259 ~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 335 (694)
-.|.-.|+.++|++.|.....-| ...|-.....|+-.|..++|+..+...-+. ++-..--+.-+.--|...++++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 98999999999999998765433 367999999999999999999988877653 11111122223334566677777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005481 336 GKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVE 415 (694)
Q Consensus 336 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 415 (694)
|.+++..+....+ .|+.+.+-+.-+..+.+.+.+|..+|+.... ..+....+ ..
T Consensus 399 Ae~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e-~~ 452 (611)
T KOG1173|consen 399 AEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNE-KI 452 (611)
T ss_pred HHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhcccc-cc
Confidence 7777766655432 2555555555555555555555555544320 00000000 00
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005481 416 PDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLS 494 (694)
Q Consensus 416 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 494 (694)
--..+++.|..+|.+.+.+++|+..|+..... .+-+..++.++.-.|...|+++.|.+.|.+. .++||..+-..++.
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 12346777777788888888888888877662 2335677778888888888888888888776 67787777666666
Q ss_pred HHH
Q 005481 495 ACR 497 (694)
Q Consensus 495 a~~ 497 (694)
.+.
T Consensus 531 ~ai 533 (611)
T KOG1173|consen 531 LAI 533 (611)
T ss_pred HHH
Confidence 544
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=8.7e-09 Score=112.61 Aligned_cols=244 Identities=11% Similarity=0.010 Sum_probs=174.1
Q ss_pred CHHHHHHHHHHHHhcCCccCcc-chHHHHHHHh---------hhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcC
Q 005481 297 NLAEAMELFRQLRERSLQVDGF-VLSSMMGVFA---------DFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCG 366 (694)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 366 (694)
..++|+.+|++..+. .|+.. .+..+..++. ..++++.|...+..+++.... +...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 456888888887764 55543 2333322222 224478888888888877543 5677778888899999
Q ss_pred CHHHHHHHHccCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHH
Q 005481 367 LIDEATELFNEMP--VK-NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFS 442 (694)
Q Consensus 367 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 442 (694)
++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 33 4667888999999999999999999999984 56542 33334445666899999999999
Q ss_pred HHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 443 RLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAI-WQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 443 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
++.+.. .|+ ...+..+...|...|++++|.+.++++ +..|+... ++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 987621 353 455778889999999999999999987 55555444 555555666666 47888888877643222
Q ss_pred cchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 520 PVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
+.....+..+|+-.|+-+.+..+ +.+.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22333477788888998888877 6666543
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.13 E-value=8.1e-08 Score=93.37 Aligned_cols=284 Identities=12% Similarity=0.039 Sum_probs=173.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005481 91 NGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARM 170 (694)
Q Consensus 91 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~ 170 (694)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.++.+.--.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 678888888888766665443 2345555566677788888888888887764456666677777777778888888776
Q ss_pred HccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCC
Q 005481 171 FDVMP---AKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPY 247 (694)
Q Consensus 171 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 247 (694)
.++.. .++.........+|.+.|++...+.++..|.+.|+--|+..-.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------- 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------- 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------------------
Confidence 65543 3567777888888888888888888888888877654432110
Q ss_pred CcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHH
Q 005481 248 SVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMM 324 (694)
Q Consensus 248 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 324 (694)
....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ -..+
T Consensus 227 -le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~ 301 (400)
T COG3071 227 -LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRL 301 (400)
T ss_pred -HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHH
Confidence 1112222333322222333333334555442 3455556677777788888888888888777766665 1122
Q ss_pred HHHhhhccHHHHHHHHHHHHh-cCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC--CCChhhHHHHHHHHHhcCCHHH
Q 005481 325 GVFADFALVEQGKQIHAYAAK-VPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP--VKNVVTWTVIITGYGKHGLAKE 401 (694)
Q Consensus 325 ~~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 401 (694)
-.+.+.++.+.-.+..+...+ .+. ++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 233444444444444443332 232 33555666666666666666666666544 3555666666666666666666
Q ss_pred HHHHHHHHHH
Q 005481 402 AVGLFRKMLL 411 (694)
Q Consensus 402 A~~~~~~m~~ 411 (694)
|.+.+++.+.
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.6e-06 Score=85.93 Aligned_cols=459 Identities=12% Similarity=0.081 Sum_probs=247.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHH--HHHHH--HhCC
Q 005481 17 DSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTA--LMCGF--LQNG 92 (694)
Q Consensus 17 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~--~~~g 92 (694)
+=|.-....+++++|.+.-..++..+ +.|...+.+-+-+..+.+++++|+.+.+.-.... +++. +=.+| .+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 34455667889999999999998877 5666777777777888999999997766544211 1222 23344 4788
Q ss_pred ChHHHHHHHHHhhhCCCCCCc-eeHHHHHHHhcccCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 005481 93 NAKACLSLFCQMGSSSVKPNE-FTLSTNIKASGVLSSVENGMQIHGMCMKSGFEW-NPVVGNSIIDMYSKCGRINEAARM 170 (694)
Q Consensus 93 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~y~~~g~~~~A~~~ 170 (694)
..++|+..++. ..++. .+...-...|.+.+++++|..+|..+.+++.+. |...-..++..-. .-.+. +
T Consensus 94 k~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L 163 (652)
T ss_pred cHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H
Confidence 99999999883 33333 355555566889999999999999998886432 2222222222211 11121 3
Q ss_pred HccCCCCCcccHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCC
Q 005481 171 FDVMPAKSLITWNAMI---AGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPY 247 (694)
Q Consensus 171 f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 247 (694)
.+..+.....+|..+- -.+...|++.+|++++....+-+.+ .+. .++.. -..+-.+
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~-eEeie~e-------- 222 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN-EEEIEEE-------- 222 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc-hhhHHHH--------
Confidence 4445544344444443 3466789999999999887432110 000 00000 0000000
Q ss_pred CcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC---Ch----hhHHHHHHHHHhCCCHH-HHHHHHHHHHhcCCccCccc
Q 005481 248 SVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK---SV----ISWSSLILGYAQEENLA-EAMELFRQLRERSLQVDGFV 319 (694)
Q Consensus 248 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~pd~~t 319 (694)
. ..+.--|.-.+...|+.++|..++..+... |. +.-|.|+..-....-++ .++..++.....
T Consensus 223 -l-~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~-------- 292 (652)
T KOG2376|consen 223 -L-NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK-------- 292 (652)
T ss_pred -H-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH--------
Confidence 0 011112333444555555555555544322 11 22233332221111111 222222221110
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCC-hhhHHHHHHHHHh--c
Q 005481 320 LSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKN-VVTWTVIITGYGK--H 396 (694)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~ 396 (694)
+. +....-+..-.+. ....-+.++.+|. +..+.++++-...+..- ...+.+++....+ .
T Consensus 293 l~------------~~~l~~Ls~~qk~----~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 293 LA------------EFLLSKLSKKQKQ----AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred hH------------HHHHHHHHHHHHH----HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 00 0000000000000 1111234555554 45566666666665322 2333444333222 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHHHH--------HHhhccCCCCChhHHHHHHHHHHh
Q 005481 397 GLAKEAVGLFRKMLLDDVEPDG--VAYLAVLSACSHSGLVEESQEYFS--------RLCNDKRMKPRIEHYSCIVDSLGR 466 (694)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~ 466 (694)
....+|.+++...-+. .|+. +.....+.-....|+++.|.+++. .+.+ .+ -.+.+...++.+|.+
T Consensus 355 ~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~--~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AK--HLPGTVGAIVALYYK 429 (652)
T ss_pred HHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hc--cChhHHHHHHHHHHh
Confidence 2466677777666553 3443 334444455567888888888888 4443 22 234556678888888
Q ss_pred cCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCch
Q 005481 467 AGRLDEAKNLIESM--------PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWN 537 (694)
Q Consensus 467 ~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 537 (694)
.+.-+-|.+++.+. .-.+. ..+|.-+...-.++|+-++|...++++++.+|++....+.++.+|+... .+
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~e 508 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PE 508 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HH
Confidence 88766666666554 22222 2233334444467799999999999999999999999999999998764 44
Q ss_pred HHHHHH
Q 005481 538 ECERLR 543 (694)
Q Consensus 538 ~a~~~~ 543 (694)
.|..+-
T Consensus 509 ka~~l~ 514 (652)
T KOG2376|consen 509 KAESLS 514 (652)
T ss_pred HHHHHh
Confidence 454443
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.7e-07 Score=91.69 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=116.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 005481 191 LAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEA 270 (694)
Q Consensus 191 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A 270 (694)
-.|++..|.+.|+........++.. |.-+-.+|....+.++..+.|..+.+.++ .++.+|-.-..++.-.+++++|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp---~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP---ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC---CCCchhHhHHHHHHHHHHHHHH
Confidence 3466666666666666544333222 55555566666666666666666666665 3445555555556666666666
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcC
Q 005481 271 RRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVP 347 (694)
Q Consensus 271 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 347 (694)
..-|+.... .++.+|-.+.-+.-+.+.+++++..|++..+. ++--...|+.....+...++++.|.+.++.+++..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 666666543 23344555555555566666666666666554 22233445555555555666666666555555432
Q ss_pred CCC-------CchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 005481 348 SGL-------DTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-V 419 (694)
Q Consensus 348 ~~~-------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~ 419 (694)
... .+.+.-+++..- -.+++..|++++++..+ +.|-. .
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q--------------------------------wk~d~~~a~~Ll~KA~e--~Dpkce~ 538 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ--------------------------------WKEDINQAENLLRKAIE--LDPKCEQ 538 (606)
T ss_pred cccccccccchhhhhhhHhhhc--------------------------------hhhhHHHHHHHHHHHHc--cCchHHH
Confidence 221 111111111111 12556666666666655 33433 4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHh
Q 005481 420 AYLAVLSACSHSGLVEESQEYFSRLC 445 (694)
Q Consensus 420 t~~~ll~a~~~~g~~~~a~~~~~~m~ 445 (694)
.|..|...-.+.|+.++|+++|+...
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55666666666666666666666553
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=9.7e-09 Score=112.24 Aligned_cols=211 Identities=11% Similarity=0.004 Sum_probs=163.9
Q ss_pred ccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhh---------hcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCC
Q 005481 331 ALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYL---------KCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHGL 398 (694)
Q Consensus 331 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 398 (694)
++++.|.+.+..+++.... +...+..+..+|. ..+++++|...+++... .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4568899999988876543 3445555554443 33458999999998763 467788889889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChh-HHHHHHHHHHhcCChHHHHHH
Q 005481 399 AKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIE-HYSCIVDSLGRAGRLDEAKNL 476 (694)
Q Consensus 399 ~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 476 (694)
+++|+..|++.++. .|+. ..+..+..++...|++++|...++++.+ +.|+.. .+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999984 5664 5777888899999999999999999988 456532 333445567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 477 IESM--PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 477 ~~~~--~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+++. ...|+ ...+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22354 4456777778889999999999999998888888888888888888888 4788877776653
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=6.9e-09 Score=103.70 Aligned_cols=189 Identities=17% Similarity=0.081 Sum_probs=129.2
Q ss_pred hHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 005481 353 SVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSAC 428 (694)
Q Consensus 353 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~ 428 (694)
..+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|+..|++.++ +.|+. .++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 345566667788888888888887765 33567888888888888999999888888887 55654 5777777788
Q ss_pred HccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGR 506 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~ 506 (694)
...|++++|.+.|+...+ ..|+..........+...+++++|.+.|++. ...|+...| .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-
Confidence 888899999988888876 4555332222223345667888888888654 223333222 1222334555443
Q ss_pred HHHHHHH-------cCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 507 EVGEILL-------RLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 507 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
..++.+. ++.|+.+.+|..++.+|...|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 3455666788899999999999999999998887643
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.3e-06 Score=91.98 Aligned_cols=466 Identities=17% Similarity=0.184 Sum_probs=267.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhccCC--CCcc-----cHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHH
Q 005481 49 LNNDLIDMYAKCGEMNGACAVFDKMLE--RNVV-----SWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIK 121 (694)
Q Consensus 49 ~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 121 (694)
-+..+.+.+.+.|-...|++.+..+.. +.++ .=..+ -.|.-.-.++++++.++.|...+++-|..+...+..
T Consensus 608 Dra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 608 DRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred cHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 366777888899999999988887743 2111 11122 234444568889999999988888777766665555
Q ss_pred HhcccCChHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC--------------
Q 005481 122 ASGVLSSVENGMQIHGMCMKS-----------GFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA-------------- 176 (694)
Q Consensus 122 a~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~-------------- 176 (694)
-|...-..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++-++-.-
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 554443344444444443321 3566777778889999999999999888765420
Q ss_pred -----C------------CcccH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh-------------HHHH
Q 005481 177 -----K------------SLITW------NAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFT-------------FTST 220 (694)
Q Consensus 177 -----~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------------~~~l 220 (694)
| |.+.| -..|..|++.-++...-.+...+..... +... ..-+
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deL 844 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDEL 844 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHH
Confidence 0 11111 1234455544333333222222222111 1111 1112
Q ss_pred HHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHH-------------------------------
Q 005481 221 LKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVE------------------------------- 269 (694)
Q Consensus 221 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~------------------------------- 269 (694)
..-+-+.+++..-...++..+..|. .+..++|+|...|...++-.+
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~---~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGS---QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccC---cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 2223334444444555555666665 466666666666554332111
Q ss_pred ---------------------HH------------HHH-----------hhc-----C-CCChhhHHHHHHHHHhCCCHH
Q 005481 270 ---------------------AR------------RVF-----------DLI-----E-QKSVISWSSLILGYAQEENLA 299 (694)
Q Consensus 270 ---------------------A~------------~~f-----------~~~-----~-~~~~~~~~~li~~~~~~g~~~ 299 (694)
|+ +++ ++. + ..|+..-+.-+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 00 000 000 0 012233344455666666666
Q ss_pred HHHHHHHHHHhcCCcc-CccchHHHHHHHhhhccHHHHHHHHHHHHhcC-----------------------CCCCchHH
Q 005481 300 EAMELFRQLRERSLQV-DGFVLSSMMGVFADFALVEQGKQIHAYAAKVP-----------------------SGLDTSVS 355 (694)
Q Consensus 300 ~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----------------------~~~~~~~~ 355 (694)
+-+++++++.-..-.. ....+..++-.-+-..+.....+....+-... +..+....
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 6666666654321110 00111111111111111111111111111110 01111111
Q ss_pred HHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH
Q 005481 356 NSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVE 435 (694)
Q Consensus 356 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 435 (694)
+.|++ .-+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|...|..++..+++.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 11211 1233444444333333 3457999999999999999999988543 36678999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 005481 436 ESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRL 515 (694)
Q Consensus 436 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 515 (694)
+-.+++..+.+ ..-+|.++ +.|+-+|++.+++.|-++++. -|+..-......-|...|.++.|.-+|..
T Consensus 1151 dLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 99999988776 44566554 579999999999999888874 47777788889999999999999888875
Q ss_pred CCCCcchHHHHHhHHHhcCCchHHHHHHHHH
Q 005481 516 DGDNPVNYVMMSNIHADAGSWNECERLRKLA 546 (694)
Q Consensus 516 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 546 (694)
.+.|..|+..+...|.+..|...-+++
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467888888888889888887655444
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=4e-09 Score=98.95 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=146.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcC
Q 005481 287 SLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCG 366 (694)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 366 (694)
.|..+|.+.|.+.+|.+-|+.-+.. .|-..||..+-.+|.+......|..++..-++. ++.++....-....+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555554443 233334444444444444444444444433332 1112222233344455556
Q ss_pred CHHHHHHHHccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 005481 367 LIDEATELFNEMPV---KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSR 443 (694)
Q Consensus 367 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 443 (694)
+.++|.++++...+ .++.+..++..+|...++++-|+..|+++++.|+. +...|..+.-+|...+++|-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666665542 24555556666777777778888888887777754 456677777777777777777776666
Q ss_pred HhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchH
Q 005481 444 LCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNY 523 (694)
Q Consensus 444 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 523 (694)
+... --.|+ + -..+|-.|.......||+..|.+.|+-++..+|++..++
T Consensus 384 Alst-at~~~------------------~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 384 ALST-ATQPG------------------Q------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHhh-ccCcc------------------h------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 6541 11111 1 234577777777788999999999999999999999999
Q ss_pred HHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 524 VMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
++|+-+-.+.|+.++|+.++....+..
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999887643
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=1.1e-08 Score=91.87 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=141.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVD 462 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 462 (694)
+...|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+.+.+ +.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 345577889999999999999999998 56766 6888899999999999999999999987 5664 668889999
Q ss_pred HHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchH
Q 005481 463 SLGRAGRLDEAKNLIESMPVKPS----IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNE 538 (694)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 538 (694)
-++..|++++|...|++.-..|+ ..+|..+..+-.+.|+.+.|+..+++.++++|+.+.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999833333 55788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 005481 539 CERLRKLARSKGL 551 (694)
Q Consensus 539 a~~~~~~m~~~g~ 551 (694)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998876553
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.04 E-value=3.8e-08 Score=95.20 Aligned_cols=197 Identities=18% Similarity=0.201 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhh
Q 005481 282 VISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDM 361 (694)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 361 (694)
...+..+...+...|++++|.+.|++..+. .|+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHH
Confidence 456777888888899999999988887664 232 12233344455
Q ss_pred hhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHH
Q 005481 362 YLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP-DGVAYLAVLSACSHSGLVEES 437 (694)
Q Consensus 362 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a 437 (694)
|...|++++|.+.|++.. ..+...+..+...+...|++++|.+.|++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 555566666665555443 2344456666777777777777777777777643222 234555666677778888888
Q ss_pred HHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 005481 438 QEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-PV-KPSIAIWQTLLSACRVHGDLELGREVGEILLR 514 (694)
Q Consensus 438 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 514 (694)
...++...+. .| +...+..+...+...|++++|.+.+++. .. +++...+..+...+...|+.+.|....+.+.+
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888877662 33 3556777778888888888888888776 22 23455566666777778888888888777665
Q ss_pred CCC
Q 005481 515 LDG 517 (694)
Q Consensus 515 ~~p 517 (694)
..|
T Consensus 232 ~~~ 234 (234)
T TIGR02521 232 LFP 234 (234)
T ss_pred hCc
Confidence 543
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.04 E-value=9e-08 Score=99.80 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHhhcc-----CCCCC-
Q 005481 387 TVIITGYGKHGLAKEAVGLFRKMLLD---DVEPDG----VAYLAVLSACSHSGLVEESQEYFSRLCNDK-----RMKPR- 453 (694)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~- 453 (694)
+.++..+...+++++|..++++..+. -+.++. .++..+...+.+.|++++|.++|++++... +..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 33445555566666666666554431 122222 467777777788888888888877776522 11222
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005481 454 IEHYSCIVDSLGRAGRLDEAKNLIESM--------PVKPS-IAIWQTLLSACRVHGDLELGREVGEILL 513 (694)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 513 (694)
...++.|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345677778888888888888877765 33455 4468999999999999999999988887
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=1e-06 Score=91.41 Aligned_cols=451 Identities=15% Similarity=0.116 Sum_probs=263.5
Q ss_pred hhcCCChHHHHHHHHHHHHh--------CCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCC
Q 005481 22 CSKNLLLDYGVQLHGALVKM--------GFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGN 93 (694)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 93 (694)
++..|++..++.+|+.+.-. |-..+.+-..+++.+.. .++.+|..+|-+- | .-...|..|....+
T Consensus 500 faai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleq---n--~te~aigmy~~lhk 572 (1636)
T KOG3616|consen 500 FAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQ---N--ATEEAIGMYQELHK 572 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhc---c--cHHHHHHHHHHHHh
Confidence 34445555555555544321 12233333444454443 3466666666431 1 12234556666666
Q ss_pred hHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHcc
Q 005481 94 AKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDV 173 (694)
Q Consensus 94 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~ 173 (694)
|++|+.+-+.. |.+.-...-.+.++++...|+-+.|-++ +.+..-.-+-|+.|.+.|....|.+.-..
T Consensus 573 wde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n 640 (1636)
T KOG3616|consen 573 WDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALN 640 (1636)
T ss_pred HHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcC
Confidence 77776664432 2111111122334444444444443322 11222234567889999998888776432
Q ss_pred C--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcch
Q 005481 174 M--PAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKT 251 (694)
Q Consensus 174 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 251 (694)
- ...|......+..++.+..-+++|-++|+++.. | ...+..+.+..-+.+|.++-+...-. .-+
T Consensus 641 ~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgdaf~kaielarfafp~-----evv 706 (1636)
T KOG3616|consen 641 DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFAFPE-----EVV 706 (1636)
T ss_pred HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhhCcH-----HHh
Confidence 2 224666666777777888888888888888754 2 22333333333344555544332210 111
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhc
Q 005481 252 VIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFA 331 (694)
Q Consensus 252 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 331 (694)
..-.+-.+-+...|+++.|...|-+... .---|.+-....++.+|+.+++.++.+. .-.--|..+...|+..|
T Consensus 707 ~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~ 779 (1636)
T KOG3616|consen 707 KLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKG 779 (1636)
T ss_pred hHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccch
Confidence 1122334455667888888887755421 1123445567788999999999888753 33445777888899999
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005481 332 LVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVK--NVVTWTVIITGYGKHGLAKEAVGLFRKM 409 (694)
Q Consensus 332 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (694)
+++.|.++|... ..++--|+||.+.|++++|.++-.+...| ...+|-+-..-+-.+|++.+|.++|-..
T Consensus 780 dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 780 DFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred hHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 999999887643 23456788999999999999988877655 4456666677778889999998887544
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 005481 410 LLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIW 489 (694)
Q Consensus 410 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 489 (694)
. .|+. .+..|-+.|..+..+++.++--. ..-.++.-.+..-|-..|++.+|++-|-+.+ -|
T Consensus 851 ~----~p~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~ 911 (1636)
T KOG3616|consen 851 G----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DF 911 (1636)
T ss_pred c----CchH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hH
Confidence 3 3553 35667888888888777664421 1113345556777888899999888887653 36
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 490 QTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 490 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
.+-.+.|...+-++.|-++.+. ....|..-.+...+ ++.=--+.|.+++.+
T Consensus 912 kaavnmyk~s~lw~dayriakt---egg~n~~k~v~flw--aksiggdaavkllnk 962 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAFLW--AKSIGGDAAVKLLNK 962 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHHHH--HHhhCcHHHHHHHHh
Confidence 6667777777777776665543 22333333333333 333223455555543
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=2.9e-06 Score=89.33 Aligned_cols=442 Identities=15% Similarity=0.104 Sum_probs=245.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCcee-HH
Q 005481 42 GFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFT-LS 117 (694)
Q Consensus 42 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 117 (694)
.+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|+..|....|+.+++.-....-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567889999999999999999999999998743 3445799999999999999999999988765433454433 33
Q ss_pred HHHHHhc-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhc
Q 005481 118 TNIKASG-VLSSVENGMQIHGMCMKSG--F--EWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLA 192 (694)
Q Consensus 118 ~ll~a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 192 (694)
..-+.|. +.+..+++..+-.+++... . ...+..|-.+.-+|...- ....++.- +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HH
Confidence 3333444 3466667766666666521 1 111223333333332210 00000000 01
Q ss_pred CChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHH
Q 005481 193 GYSDKGLLLFRKMQEHG-EIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEAR 271 (694)
Q Consensus 193 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~ 271 (694)
....++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+...+..+.+.. .+...|..|.-.+.-.+++.+|+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~--~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRG--DSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhhHHHH
Confidence 11234455555554432 223333333322 33445566666666666655444 55556666666666666666666
Q ss_pred HHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHH--hc
Q 005481 272 RVFDLIEQK---SVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAA--KV 346 (694)
Q Consensus 272 ~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~ 346 (694)
.+.+...+. |.+....-+..-..-++.++|+.....+..- --+...+...+. .|. ..+....+. ..
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~---~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGK---LLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhh---hhhhhcccccCcc
Confidence 655544321 1111111112222245555555555554431 000000000000 000 000000000 00
Q ss_pred CCCCCchHHHH---HhhhhhhcCCHHHHHHHHccCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005481 347 PSGLDTSVSNS---IVDMYLKCGLIDEATELFNEMPVKN------VVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD 417 (694)
Q Consensus 347 ~~~~~~~~~~~---li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 417 (694)
.....+.++.. ++..=.+.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.|-
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l 682 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPL 682 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchh
Confidence 00001111111 1111111111111112222222333 23566777788888999999887777765 3443
Q ss_pred H-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCCC-HHHHHH
Q 005481 418 G-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKN--LIESM-PVKPS-IAIWQT 491 (694)
Q Consensus 418 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~~~ 491 (694)
. ..|......+...|...+|.+.|..... +.|+ +....++..++.+.|+..-|.. ++..+ .+.|+ ...|-.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3 4555555667788999999999998866 6786 5678899999999998777776 77777 55664 778999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCcc
Q 005481 492 LLSACRVHGDLELGREVGEILLRLDGDNPV 521 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 521 (694)
|.....+.|+.+.|-..|..++++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999987663
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=8.2e-06 Score=78.00 Aligned_cols=188 Identities=12% Similarity=0.074 Sum_probs=123.8
Q ss_pred HHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 005481 357 SIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGL-------AKEAVGLFRKMLLDDVEPDGV-AYLAVLSAC 428 (694)
Q Consensus 357 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~ 428 (694)
.|+-.|.+.+++++|..+.+......+.-|-.-...++.+|+ ..-|.+.|+-.-.++..-|.+ ---++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 466779999999999999988875444433322233333443 334555554444444443332 223344455
Q ss_pred HccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCChHHH
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMP--VKPSIAIWQTLLSA-CRVHGDLELG 505 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~a-~~~~g~~~~a 505 (694)
.-..++++.+.++..+.. +=..-|...| .+..+++..|.+.+|+++|-... .-.|..+|.+++.- |...+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 556778999999998877 5344444444 57899999999999999998872 22467778777764 5677888887
Q ss_pred HHHHHHHHcCC-CCC-cchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 506 REVGEILLRLD-GDN-PVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 506 ~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
..++- +.+ |.+ -.....+++-+.+++.+--|.+.|..+...
T Consensus 448 W~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 448 WDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 66554 333 322 244556678899999999999999987654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=2.7e-07 Score=92.29 Aligned_cols=198 Identities=11% Similarity=0.005 Sum_probs=128.5
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCHH
Q 005481 324 MGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV--K-NVVTWTVIITGYGKHGLAK 400 (694)
Q Consensus 324 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 400 (694)
...+...|+.+.|...+..+++... .+...++.+...|...|++++|...|++..+ | +..+|..+...+...|+++
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 3334444555555555544444332 2566778888888999999999999888753 3 5678888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHH--HHHHHH
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDE--AKNLIE 478 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~ 478 (694)
+|++.|++..+ ..|+..........+...++.++|...|...... ..|+... ..++..+ .|++.+ +.+.+.
T Consensus 150 eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~ 222 (296)
T PRK11189 150 LAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWG-WNIVEFY--LGKISEETLMERLK 222 (296)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccH-HHHHHHH--ccCCCHHHHHHHHH
Confidence 99999999988 4565432222222344567899999999776541 2343322 2333333 444433 333333
Q ss_pred hC-CC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC-CCcchHHHHHhH
Q 005481 479 SM-PV----KP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDG-DNPVNYVMMSNI 529 (694)
Q Consensus 479 ~~-~~----~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~ 529 (694)
+. .. .| ....|..+...+...|++++|+..|+++++.+| +...+-..++.+
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 22 11 12 245799999999999999999999999999997 444444444443
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=7.9e-06 Score=85.02 Aligned_cols=435 Identities=13% Similarity=0.106 Sum_probs=244.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCcc-cHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCCh
Q 005481 51 NDLIDMYAKCGEMNGACAVFDKMLERNVV-SWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSV 129 (694)
Q Consensus 51 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 129 (694)
..-|.+|....++++|+.+-+..-.|... .-.+.++++...|+-++|-++-.. +..+ .+.|..|.+.|.+
T Consensus 561 e~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd~-laaiqlyika~~p 631 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGDG-LAAIQLYIKAGKP 631 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCcc-HHHHHHHHHcCCc
Confidence 45678888889999998887766555422 223445555666766666544211 2222 2345666666666
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005481 130 ENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHG 209 (694)
Q Consensus 130 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 209 (694)
..|.+.-.. +.-+..|......+...+.+..-++.|-.+|+++..++. -+..|-+..-+-+|+++-+-.
T Consensus 632 ~~a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa---- 700 (1636)
T KOG3616|consen 632 AKAARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA---- 700 (1636)
T ss_pred hHHHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh----
Confidence 555443211 111223444444455555555556666666666554321 122222222233333332221
Q ss_pred CCCChhhHHH-HHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhh--HH
Q 005481 210 EIPDEFTFTS-TLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVIS--WS 286 (694)
Q Consensus 210 ~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~ 286 (694)
++...+++.- --..+...|+++.|..-|-+.. ..---+.+-.....+.+|+.+++.+.+.++.+ |.
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~-----------~~~kaieaai~akew~kai~ildniqdqk~~s~yy~ 769 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----------CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYG 769 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccch
Confidence 0000111000 0011122233333222221110 01112334445566667777777666554433 45
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcC
Q 005481 287 SLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCG 366 (694)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 366 (694)
.+...|+..|+++.|.++|.+.- .+.-.+..|.+.|.++.|.++-... .|.......|-+-..-+-+.|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhc
Confidence 55566777777777777765421 2344556666777776665553322 344444555555566667889
Q ss_pred CHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHH
Q 005481 367 LIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG--VAYLAVLSACSHSGLVEESQEYFSRL 444 (694)
Q Consensus 367 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m 444 (694)
++.+|.++|-.+..|+.. |..|-++|..++.+.+..+- .||. .|...+..-+...|++.+|...|-++
T Consensus 839 kf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 839 KFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred chhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 999999999998888754 67889999999988887763 3444 46667777888889999999888665
Q ss_pred hhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC----CCHHHHHHH------HHHHHhcCChHHHHH-------
Q 005481 445 CNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVK----PSIAIWQTL------LSACRVHGDLELGRE------- 507 (694)
Q Consensus 445 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~l------l~a~~~~g~~~~a~~------- 507 (694)
.. |.+-+++|-..+.+++|.++-+.-+-. .-...|.-- ...+.++|-.+.|..
T Consensus 909 ~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~a 978 (1636)
T KOG3616|consen 909 GD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCA 978 (1636)
T ss_pred hh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccc
Confidence 43 667888999999999999887764211 012233221 122345555554443
Q ss_pred ------HHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 508 ------VGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 508 ------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+.+... ...-+..+..++--+...|++++|.+-+-+..+.
T Consensus 979 fd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 979 FDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 322222 2233567778888889999999997776666554
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.6e-05 Score=84.19 Aligned_cols=346 Identities=13% Similarity=0.100 Sum_probs=187.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHH
Q 005481 18 SLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKAC 97 (694)
Q Consensus 18 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 97 (694)
|..-+-+++++..-...++..+..| ..|+.++|+|...|...++-.+- .+ +.|..-=+..+.-|+...++.-|
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fL----keN~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FL----KENPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hc----ccCCcchhhHHhhhhcccCCceE
Confidence 3344556667777777778888888 57888999999999877554321 11 12222222333444444433333
Q ss_pred HHHHHHhhhC----CC----------------CCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCC--CChhHHHHHH
Q 005481 98 LSLFCQMGSS----SV----------------KPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFE--WNPVVGNSII 155 (694)
Q Consensus 98 ~~~~~~m~~~----g~----------------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~ll 155 (694)
.-.|++=.-. ++ +.|...|..++. ..-..-+++.++++..+++ .|+.-.+.-+
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tV 991 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTV 991 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHH
Confidence 2222110000 00 113333444332 1122234566777766653 3455566667
Q ss_pred HHHHhcCChHHHHHHHccCC-CCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCC
Q 005481 156 DMYSKCGRINEAARMFDVMP-AKSLI-----TWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGS 229 (694)
Q Consensus 156 ~~y~~~g~~~~A~~~f~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 229 (694)
.++...+-..+-.++++++. ++++. .-|.||-.-.+. +.....+..+++-..+. |+ +...+...+-
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~~L 1063 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIENQL 1063 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhhhH
Confidence 77777777788888877764 23222 234444333333 33445555555433221 22 2223344455
Q ss_pred chHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005481 230 VGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLR 309 (694)
Q Consensus 230 ~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (694)
+++|..+|...- .+....+.|++ .-+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1064 yEEAF~ifkkf~-------~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD-------MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HHHHHHHHHHhc-------ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 666666665432 33333344433 335566666666555443 46788888888888888887776442
Q ss_pred hcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHH
Q 005481 310 ERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVI 389 (694)
Q Consensus 310 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 389 (694)
-|...|..++..+.+.|.++.-...+..+.+..-+|.+ -+.|+-+|++.+++.+-++.+. .||+.....+
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQV 1200 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHH
Confidence 25567778888888888888877777777776655443 3567777888877777666543 2333333333
Q ss_pred HHHHHhcCCHHHHHHHH
Q 005481 390 ITGYGKHGLAKEAVGLF 406 (694)
Q Consensus 390 i~~~~~~g~~~~A~~~~ 406 (694)
..-|...|.++.|.-+|
T Consensus 1201 Gdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred hHHHhhhhhhHHHHHHH
Confidence 33344444444443333
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.86 E-value=8.3e-05 Score=77.13 Aligned_cols=457 Identities=14% Similarity=0.129 Sum_probs=255.1
Q ss_pred CCChhH-HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHH
Q 005481 9 VSERQR-LADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTAL 84 (694)
Q Consensus 9 ~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~l 84 (694)
.|-..+ |-.+++.| ..+.+..+....+.+++ +++....+....--.+...|+-++|......-.. ++.+.|+.+
T Consensus 4 ~~KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 343333 56666655 45667777777777777 3333333333332334557999999888877755 456789998
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCc-eeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005481 85 MCGFLQNGNAKACLSLFCQMGSSSVKPNE-FTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGR 163 (694)
Q Consensus 85 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~ 163 (694)
.-.+-...++++|+..|+..... .||. ..+.-+--.-++.++++.....-....+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq---------------------- 137 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ---------------------- 137 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----------------------
Confidence 88888889999999999998764 3442 2222111111222222222222221111
Q ss_pred hHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHH------HHcccCCchHHHHH
Q 005481 164 INEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHG-EIPDEFTFTSTLK------ACGSLGSVGGGTQI 236 (694)
Q Consensus 164 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~~a~~~ 236 (694)
........|..+..++--.|++..|..+.++..+.. -.|+...+..... .....|.++.+.+.
T Consensus 138 ----------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 138 ----------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred ----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 111234467777777777777777777777775543 2345444433222 23344555555555
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC--ChhhHHHHH-HHHHhCCCHHHHH-HHHHHHHhcC
Q 005481 237 HGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK--SVISWSSLI-LGYAQEENLAEAM-ELFRQLRERS 312 (694)
Q Consensus 237 ~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g 312 (694)
+..-...-+ ......-.-.+.+.+.+++++|..++..+..+ |...|+-.. .++.+--+.-+++ .+|....+.-
T Consensus 208 L~~~e~~i~---Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 208 LLDNEKQIV---DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHhhhhHHH---HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 444332222 23334445566788888899998888887654 444444333 3333233333344 5555544321
Q ss_pred CccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHH----HHHHHccC----------
Q 005481 313 LQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDE----ATELFNEM---------- 378 (694)
Q Consensus 313 ~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~---------- 378 (694)
.. -......=++......-.+....++....+.|+++ ++..+...|-.-...+- +..+...+
T Consensus 285 ~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 285 PR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred cc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 11 00001111111112222333344455555666543 22333333322111110 11111111
Q ss_pred ----CCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHhhccCCC
Q 005481 379 ----PVKNVVTWTV--IITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFSRLCNDKRMK 451 (694)
Q Consensus 379 ----~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 451 (694)
..|....|+. ++..|-..|+++.|+..++.... ..|+.+ -|..=.+.+.+.|++++|..++++..+. -.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~ 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DT 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cc
Confidence 1345556654 67788889999999999999886 577774 5656668899999999999999999762 24
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-C--------HHHHHHHH--HHHHhcCChHHHHHHHHHH
Q 005481 452 PRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKP-S--------IAIWQTLL--SACRVHGDLELGREVGEIL 512 (694)
Q Consensus 452 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~--------~~~~~~ll--~a~~~~g~~~~a~~~~~~~ 512 (694)
||...-.--+.-..|+.+.++|.++.....-.. + .-.|-.+- .+|.+.|++.+|.+-+..+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 555444455667789999999999887762111 1 22465553 3577888887777654443
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=8.9e-05 Score=78.56 Aligned_cols=222 Identities=12% Similarity=0.042 Sum_probs=125.0
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCC-----------CCc-ccHHHHHHHHH
Q 005481 22 CSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE-----------RNV-VSWTALMCGFL 89 (694)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----------~~~-~~~~~li~~~~ 89 (694)
|...|+.+.|-.-...+. +..+|..+.+++.+..+++-|.-.+..|.. .|. ..=-...-.-.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 344566665544433332 335677777777777766666665555522 011 11111111223
Q ss_pred hCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005481 90 QNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAAR 169 (694)
Q Consensus 90 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~ 169 (694)
+.|..++|..+|++..+. ..+=+.|-..|.+++|.++-+.=-+..+. .+|.....-+-..++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 556667777777666542 22333344556666666654432221111 233333333344556666666
Q ss_pred HHccCCC-----------------------CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcc
Q 005481 170 MFDVMPA-----------------------KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGS 226 (694)
Q Consensus 170 ~f~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 226 (694)
.|++... +|...|.-...-+-..|+.+.|+.+|...+. |-++++..+-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 6655431 2333444444444456888888888877655 5566677777
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcC
Q 005481 227 LGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIE 278 (694)
Q Consensus 227 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 278 (694)
.|+.++|.++-++- .|....-.|..+|-..|++.+|...|.+..
T Consensus 951 qGk~~kAa~iA~es--------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES--------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhc--------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 78888887776542 455566678889999999999998887654
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.1e-07 Score=89.52 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=175.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005481 82 TALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKC 161 (694)
Q Consensus 82 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~ 161 (694)
+.|..+|.+.|.+.+|...|+.-... .|-..||..+-++|.+..++..|..++.+.++. ++.|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778899999999999999888775 455668888889999999999999998888775 455666666777888888
Q ss_pred CChHHHHHHHccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHH
Q 005481 162 GRINEAARMFDVMPA---KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHG 238 (694)
Q Consensus 162 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 238 (694)
++.++|.++++...+ -++.+..++..+|.-.++++-|+..|+++++.|+. +...|..+--.|.-.++++.+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999987764 36667777778888889999999999999998874 66677777777777888888888888
Q ss_pred HHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 005481 239 FLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK---SVISWSSLILGYAQEENLAEAMELFRQLRE 310 (694)
Q Consensus 239 ~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (694)
.+...--.++....+|-.|.......|++..|.+.|+-.... +..++|.|.-.-.+.|+.++|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 777665543455667777777777788888888888776543 346777777777888888888888877655
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.82 E-value=0.00011 Score=76.28 Aligned_cols=453 Identities=13% Similarity=0.035 Sum_probs=279.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005481 81 WTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSK 160 (694)
Q Consensus 81 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~ 160 (694)
+-.++..| ..+++...+.+.+...+. .+--..|....--.+...|+.++|.......++.. .-+.+.|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 44445544 456777888877777662 22223343333334556788888888877777643 3355677777777777
Q ss_pred cCChHHHHHHHccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHcccCCchHHHHH
Q 005481 161 CGRINEAARMFDVMPA---KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPD-EFTFTSTLKACGSLGSVGGGTQI 236 (694)
Q Consensus 161 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~ 236 (694)
..++++|.+.|..... .|...|.-+.---++.|+++...+.-.+..+. .|+ ...|.....+.--.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999987653 46677887777778888888888877777663 344 44677778888888999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHH------HHHHHHcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005481 237 HGFLITSGFPYSVKTVIAGSL------VDFYVKCGCLVEARRVFDLIEQK--S-VISWSSLILGYAQEENLAEAMELFRQ 307 (694)
Q Consensus 237 ~~~~~~~g~~~~~~~~~~~~l------i~~y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (694)
.+...+.... .++...+.-. .....+.|.+++|.+.+...... | ...-......+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~-~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNT-SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 9998887631 1333322222 22346788899998888766542 2 22233455678889999999999999
Q ss_pred HHhcCCccCccchHHHHHHHhh-hcc-HHHHHHHHHHHHhcCCCCCchH--HHHHhhhhhhcCCHHHHHHHHccCCCCC-
Q 005481 308 LRERSLQVDGFVLSSMMGVFAD-FAL-VEQGKQIHAYAAKVPSGLDTSV--SNSIVDMYLKCGLIDEATELFNEMPVKN- 382 (694)
Q Consensus 308 m~~~g~~pd~~t~~~ll~~~~~-~~~-~~~a~~i~~~~~~~~~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~~- 382 (694)
++.. .||..-|.-.+..+.. ..+ .+....++....+.-....... --.++.. ..-.+....++..+..+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~---eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG---EELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc---chhHHHHHHHHHHHhhcCC
Confidence 9986 7888888877776652 333 3333355555443321111110 0011111 111122222333322222
Q ss_pred hhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCC----------CCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 383 VVTWTVIITGYGKHGLAKE----AVGLFRKMLLDD----------VEPDGV--AYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g----------~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
+..+..+.+-|-.-...+- +..+...+-..| -+|... |+..+...+-+.|+++.|..+.+.++.
T Consensus 320 p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 320 PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 2233333333332221111 111111111111 145553 445566677889999999999999976
Q ss_pred ccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcc--
Q 005481 447 DKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-P-VKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPV-- 521 (694)
Q Consensus 447 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-- 521 (694)
-.|+ ++.|-.=..++...|.+++|..++++. . ..||..+-+--..-..+.++.++|.++..+.-+.+-+-..
T Consensus 400 ---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L 476 (700)
T KOG1156|consen 400 ---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNL 476 (700)
T ss_pred ---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhH
Confidence 3566 556767778899999999999999988 2 3456555444555556788999999998887765532111
Q ss_pred -----hHH--HHHhHHHhcCCchHHHHHHHHHH
Q 005481 522 -----NYV--MMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 522 -----~~~--~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
.|. .=+.+|.++|+|.+|.+-+..+.
T Consensus 477 ~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 477 AEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 122 22567889999988887666553
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=2.6e-07 Score=91.00 Aligned_cols=147 Identities=13% Similarity=0.061 Sum_probs=95.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChh---HHHHHHHHHHhcCC
Q 005481 393 YGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIE---HYSCIVDSLGRAGR 469 (694)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~ 469 (694)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchh
Confidence 44456666666665432 2334444555666667777777777777654 333321 12222333333346
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCc-hHHHHHHHHH
Q 005481 470 LDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSW-NECERLRKLA 546 (694)
Q Consensus 470 ~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 546 (694)
+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+..+++-+....|+. +.+.+++..+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 78888888887 34467777888888888999999999999999999999999999998888899988 5677788877
Q ss_pred Hh
Q 005481 547 RS 548 (694)
Q Consensus 547 ~~ 548 (694)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.80 E-value=2.8e-05 Score=82.50 Aligned_cols=430 Identities=13% Similarity=0.077 Sum_probs=215.1
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc----
Q 005481 86 CGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKC---- 161 (694)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~---- 161 (694)
..+...|++++|++.+..-... +......+......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4557788999999888775432 33233344455566778888888888888888875 23344444444444222
Q ss_pred -CChHHHHHHHccCCCCC--cccHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHH
Q 005481 162 -GRINEAARMFDVMPAKS--LITWNAMIAGYVLAGYSD-KGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIH 237 (694)
Q Consensus 162 -g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 237 (694)
.+.+....+|+++...- ..+...+.-.+.....+. .+...+..+...|++ .+|+.+-..|.......-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 13455555555554321 111222222222212222 233444555555653 23333333343332222222222
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhh-cCCCChhhH--HHHHHHHHhCCCHHHHHHHHHHHHhcCCc
Q 005481 238 GFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDL-IEQKSVISW--SSLILGYAQEENLAEAMELFRQLRERSLQ 314 (694)
Q Consensus 238 ~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 314 (694)
.......- .++.+.... .. -..|....| .-+...|-..|++++|++++++..+. .
T Consensus 167 ~~~~~~l~-----------------~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--t 224 (517)
T PF12569_consen 167 EEYVNSLE-----------------SNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--T 224 (517)
T ss_pred HHHHHhhc-----------------ccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--C
Confidence 22221100 000000000 00 001222233 44456666777777777777776664 4
Q ss_pred cCc-cchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCCh----------
Q 005481 315 VDG-FVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNV---------- 383 (694)
Q Consensus 315 pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---------- 383 (694)
|+. ..|..-...+-+.|++..|.+..+.+.+.... |..+-+-.+..+.++|++++|.+++.....++.
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 443 34455555667777777777777777666544 666667777777888888888887766654331
Q ss_pred hhHH--HHHHHHHhcCCHHHHHHHHHHHHHC--CC-------------CCCHHHHHHHHHHHHccCc-------HHHHHH
Q 005481 384 VTWT--VIITGYGKHGLAKEAVGLFRKMLLD--DV-------------EPDGVAYLAVLSACSHSGL-------VEESQE 439 (694)
Q Consensus 384 ~~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~-------------~pd~~t~~~ll~a~~~~g~-------~~~a~~ 439 (694)
..|- .-..+|.+.|++..|++-|....+. .+ +....+|..++...-+... ...|.+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~ 383 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIR 383 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1332 3456778888888887776665441 01 1122334444433222111 123334
Q ss_pred HHHHHhhccCCCCCh-----------hHHHHHHHHH---HhcCChHHHHHHHH-----------hC----CCCCCHHHHH
Q 005481 440 YFSRLCNDKRMKPRI-----------EHYSCIVDSL---GRAGRLDEAKNLIE-----------SM----PVKPSIAIWQ 490 (694)
Q Consensus 440 ~~~~m~~~~~~~p~~-----------~~~~~li~~~---~~~g~~~~A~~~~~-----------~~----~~~p~~~~~~ 490 (694)
++-.+-......... .--..+-.-. .+...-+++...-. +. +.++|.-..+
T Consensus 384 iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G 463 (517)
T PF12569_consen 384 IYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG 463 (517)
T ss_pred HHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH
Confidence 443332211000000 0000000000 11111111211110 00 1111211111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 491 TLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 491 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
.-+. ....=.++|.+.++-+.+..|++..+|..--.+|.+.|++--|.+.+..
T Consensus 464 ekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1111 2233468899999999999999999999999999999999988877653
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=0.00032 Score=82.68 Aligned_cols=366 Identities=13% Similarity=0.012 Sum_probs=169.8
Q ss_pred HHHHhcCChHHHHHHHccCCCCCccc--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHH
Q 005481 156 DMYSKCGRINEAARMFDVMPAKSLIT--WNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGG 233 (694)
Q Consensus 156 ~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 233 (694)
..|...|++.+|..........+... ...........|+++.+..++..+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34556677777776666555432211 1112233445677777666666552211111222222333344566777777
Q ss_pred HHHHHHHHHhCCCC------CcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC----CCh----hhHHHHHHHHHhCCCHH
Q 005481 234 TQIHGFLITSGFPY------SVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ----KSV----ISWSSLILGYAQEENLA 299 (694)
Q Consensus 234 ~~~~~~~~~~g~~~------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~ 299 (694)
...+..+...-... .........+...+...|++++|...+++... .+. ..++.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 77776665431110 00112222233445566677777666665321 111 23344445555666666
Q ss_pred HHHHHHHHHHhcCCcc-----CccchHHHHHHHhhhccHHHHHHHHHHHHhc----CCCCCchHHHHHhhhhhhcCCHHH
Q 005481 300 EAMELFRQLRERSLQV-----DGFVLSSMMGVFADFALVEQGKQIHAYAAKV----PSGLDTSVSNSIVDMYLKCGLIDE 370 (694)
Q Consensus 300 ~A~~~~~~m~~~g~~p-----d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~li~~y~~~g~~~~ 370 (694)
+|...+.+.....-.. ...++..+...+...|+++.|...+...... +.....
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~------------------ 570 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP------------------ 570 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc------------------
Confidence 6666666654321100 0112222223334444444444444433221 100000
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 371 ATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLD--DVEPD--GVAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 371 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
.....+..+...+...|++++|...+++.... ...|. ..++..+.......|+.++|.+.++.+..
T Consensus 571 ----------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 571 ----------MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred ----------HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00112233334444556666666666655432 11111 12333344455566666776666666543
Q ss_pred ccCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 005481 447 DKRMKPRIEHY-----SCIVDSLGRAGRLDEAKNLIESMPVK--PSI----AIWQTLLSACRVHGDLELGREVGEILLRL 515 (694)
Q Consensus 447 ~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 515 (694)
...-......+ ......+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...++++++.
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11100000001 01123344566777777776554110 111 11334445566667777777777776653
Q ss_pred C------CCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 516 D------GDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 516 ~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
. +....++..++.+|...|+.++|...+.+..+.
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 111235556667777777777777777776653
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=1.6e-06 Score=78.30 Aligned_cols=198 Identities=18% Similarity=0.127 Sum_probs=141.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhh
Q 005481 284 SWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYL 363 (694)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 363 (694)
+...|..+|.+.|++..|..-+++.++. .|+ +..++..+...|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs----------------------------------~~~a~~~~A~~Yq 80 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPS----------------------------------YYLAHLVRAHYYQ 80 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHHH
Confidence 3445566777777777777777777664 232 3445556666777
Q ss_pred hcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHH
Q 005481 364 KCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQE 439 (694)
Q Consensus 364 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~ 439 (694)
+.|..+.|.+.|++.. ..+....|....-+|..|++++|...|++....-.-|.. .||..+.-+..+.|+.+.|..
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 7777777777777654 345556677777778888888888888888875433333 578788777788888888888
Q ss_pred HHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 005481 440 YFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLD 516 (694)
Q Consensus 440 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 516 (694)
+|++..+ +.|+ ......|.+.....|++..|..+++.. ...++..+.-..+..-...||.+.+-+.-.++...-
T Consensus 161 ~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 161 YLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888877 3444 456777888888888888888888876 334666665555666677788888888888888888
Q ss_pred CCCc
Q 005481 517 GDNP 520 (694)
Q Consensus 517 p~~~ 520 (694)
|...
T Consensus 238 P~s~ 241 (250)
T COG3063 238 PYSE 241 (250)
T ss_pred CCcH
Confidence 8643
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=1.7e-05 Score=75.60 Aligned_cols=194 Identities=18% Similarity=0.162 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcc
Q 005481 150 VGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMI---AGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGS 226 (694)
Q Consensus 150 ~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 226 (694)
-.--|...+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=|.+.++ .+||-..-..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi------- 110 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI------- 110 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH-------
Confidence 3344556666677888888888777777777776664 467777777777777777766 4555332110
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChh------------------hHHHH
Q 005481 227 LGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVI------------------SWSSL 288 (694)
Q Consensus 227 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~------------------~~~~l 288 (694)
++ ...+.|.|.++.|..-|+.+.+.++. .....
T Consensus 111 ---------------QR--------------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~q 161 (504)
T KOG0624|consen 111 ---------------QR--------------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQ 161 (504)
T ss_pred ---------------Hh--------------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHH
Confidence 01 11234555555555555554432210 01112
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCH
Q 005481 289 ILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLI 368 (694)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 368 (694)
+..+..+|+...|+.....+++ .. +.|...+..-..+|...|++
T Consensus 162 l~s~~~~GD~~~ai~~i~~llE-----------------------------------i~-~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLE-----------------------------------IQ-PWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHh-----------------------------------cC-cchhHHHHHHHHHHHhcCcH
Confidence 2233344444444444444443 22 12555555666777777777
Q ss_pred HHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005481 369 DEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV 419 (694)
Q Consensus 369 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 419 (694)
..|+.-++... ..+.....-+-..+...|+.+.++...++-++ +.||..
T Consensus 206 k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 77766554433 45556666666777777888888888877776 567763
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=5.1e-05 Score=82.22 Aligned_cols=175 Identities=10% Similarity=0.053 Sum_probs=107.8
Q ss_pred HHHHHHHHHhCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 005481 32 VQLHGALVKMGFSFD-LMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTALMCGFLQNGNAKACLSLFCQMGSS 107 (694)
Q Consensus 32 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 107 (694)
..++..+....+.++ ...|..|-..|...-+...|.+.|+..-+ .+..+|-.....|++..+++.|..+.-.--+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 333333333333333 34677777777777777788888887755 34567888888888888888888873322221
Q ss_pred C-CCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHH--
Q 005481 108 S-VKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNA-- 184 (694)
Q Consensus 108 g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-- 184 (694)
. ...-...|...--.+-..++...+..-|+..++.. +-|...|..|..+|.++|++..|.++|.+...-++.+|-.
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 1 00011122222333455667777777777776654 4466788888888888888888888887776544333222
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHH
Q 005481 185 -MIAGYVLAGYSDKGLLLFRKMQE 207 (694)
Q Consensus 185 -li~~~~~~g~~~~A~~~~~~m~~ 207 (694)
....-+..|.+.+|+..+.....
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 12234567888888877776643
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=2.4e-07 Score=94.21 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=163.1
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 005481 328 ADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHGLAKEAVG 404 (694)
Q Consensus 328 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 404 (694)
.+.|++..|.-.|+.+++.... +...|--|...-...++-..|+..+++..+ .|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 3445566666666666655433 556666666667777777777777776653 366677777888888888888988
Q ss_pred HHHHHHHCCCCCCHHHHHHH--------HHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005481 405 LFRKMLLDDVEPDGVAYLAV--------LSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNL 476 (694)
Q Consensus 405 ~~~~m~~~g~~pd~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 476 (694)
.++.-+... |-......- -........+....++|-.+....+..+|.+++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 888776532 111000000 0112222334556667777766677668888999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 477 IESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 477 ~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
|+.+ .++|+ ..+||-|...+....+.++|+.+|++++++.|.-..+...|+-.|...|.++||.+.+-.+...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9987 67775 6679999999999999999999999999999999999999999999999999999998877653
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.5e-06 Score=82.57 Aligned_cols=215 Identities=15% Similarity=0.102 Sum_probs=133.9
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChh----------hHHHHH
Q 005481 321 SSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVV----------TWTVII 390 (694)
Q Consensus 321 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 390 (694)
..+..+..+..+++.+.+-+...+... .+..-++....+|...|.+.+....-+...+.... +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555555566677777776666655 45555666667777777766665554443322111 122234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChh-HHHHHHHHHHhcCC
Q 005481 391 TGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIE-HYSCIVDSLGRAGR 469 (694)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~ 469 (694)
.+|.+.++++.|+..|++.+..-..||.. .+....+++........- +.|... -...=.+.+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccC
Confidence 45666777888888888776654444432 222233444443333322 344421 11122566777888
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 470 LDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 470 ~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
+.+|+..+.++ ...| |...|.....+|.+.|++..|..-.+..++++|+....|..=+-++....+|+.|.+.+++..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776 3334 456677777777888888888888888888888888888888888888888888888887766
Q ss_pred hC
Q 005481 548 SK 549 (694)
Q Consensus 548 ~~ 549 (694)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 54
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=6.1e-05 Score=81.61 Aligned_cols=522 Identities=14% Similarity=0.006 Sum_probs=258.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCc---c--cHHHHHHHHH
Q 005481 15 LADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNV---V--SWTALMCGFL 89 (694)
Q Consensus 15 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~--~~~~li~~~~ 89 (694)
|..+=..|...-+...|...|....+.. ..+...+....+.|++..+++.|..+.-...+.+. . .|-...-.|.
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 3333333443345556666666665544 45667778888888888888888877433333221 1 2323333455
Q ss_pred hCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHH
Q 005481 90 QNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNP-VVGNSIIDMYSKCGRINEAA 168 (694)
Q Consensus 90 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~y~~~g~~~~A~ 168 (694)
+.++...|+.-|+...+.. +-|...|..+..+|...|....|.++|..+... .|+. +.---...+-+..|.+.+|.
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5666666666666665532 125556666666676667766666666665543 2221 11111222334456666665
Q ss_pred HHHccCCCC----------CcccHHHHHHHHHhcCChhHHHHHHHH-------HHHCCC---------------------
Q 005481 169 RMFDVMPAK----------SLITWNAMIAGYVLAGYSDKGLLLFRK-------MQEHGE--------------------- 210 (694)
Q Consensus 169 ~~f~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~g~--------------------- 210 (694)
..+..+... -..++-.+...+...|-..+|.+.|+. ......
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 555444310 011111111122222222222222222 111111
Q ss_pred --CCChhhHHHHHHHHcccCCc---h---HHHHHHHHHHHhCCCCCcchhhHHHHHHHHHH----cC----CHHHHHHHH
Q 005481 211 --IPDEFTFTSTLKACGSLGSV---G---GGTQIHGFLITSGFPYSVKTVIAGSLVDFYVK----CG----CLVEARRVF 274 (694)
Q Consensus 211 --~p~~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~----~g----~~~~A~~~f 274 (694)
.|+......+..-.-..+.. + .|.+.+-. ...+. .+...|..|+..|.+ +| +...|...+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~--~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLA--IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHh--hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 12222222222111112221 1 01111100 00111 223334444433333 11 223455555
Q ss_pred hhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCC
Q 005481 275 DLIE---QKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLD 351 (694)
Q Consensus 275 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 351 (694)
.... ..+...||+|.-. ...|.+.-|...|-+-.... +-...+|..+--.|....+++.|.+.+.......+. +
T Consensus 807 KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-n 883 (1238)
T KOG1127|consen 807 KKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-N 883 (1238)
T ss_pred HHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-h
Confidence 5433 3456677766554 44455666655555444321 224455666666666677777777777766554322 2
Q ss_pred chHHHHHhhhhhhcCCHHHHHHHHccC-----C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCC
Q 005481 352 TSVSNSIVDMYLKCGLIDEATELFNEM-----P---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLL---------DDV 414 (694)
Q Consensus 352 ~~~~~~li~~y~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~ 414 (694)
...+-...-..-..|+.-++..+|..- . .++..-|-+-..-..++|+.++-+...+++-. .|.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 222211111223456666666666541 1 23444455444455566666655444443322 133
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHH----HHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 005481 415 EPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSC----IVDSLGRAGRLDEAKNLIESMPVKPSIAIWQ 490 (694)
Q Consensus 415 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 490 (694)
+-+...|...+....+.+.+.+|.+...+.+.-...+-+...|+. +...+...|.++.|..-+...+..-|..+.+
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~g 1043 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRG 1043 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhh
Confidence 334467777777777888888777776665442222344445553 3345556678887777666654444554544
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCcc---hHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 491 TLLSACRVHGDLELGREVGEILLRLDGDNPV---NYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 491 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
+-+.. .-.|+++.+...|++++.+--++.. ....++.....++.-+.|....-+...
T Consensus 1044 t~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1044 TDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 44444 3457899999999999887554333 233344455566777777766555543
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=1.9e-05 Score=83.37 Aligned_cols=405 Identities=14% Similarity=0.127 Sum_probs=242.2
Q ss_pred CChhhHHHHHH--HHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHhhhC-CC--------CCCc
Q 005481 45 FDLMLNNDLID--MYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQMGSS-SV--------KPNE 113 (694)
Q Consensus 45 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~ 113 (694)
.|..+-.++++ .|..-|+.+.|.+-.+.+.. -+.|..|.+.|++..+.+-|.-.+-.|... |. .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 56677777765 67788999999887776653 346999999999999998888887777431 21 222
Q ss_pred eeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCC-CcccHHHHHHHHHhc
Q 005481 114 FTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAK-SLITWNAMIAGYVLA 192 (694)
Q Consensus 114 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~ 192 (694)
.+=.-+.-.....|-+++|+.++.+..+.. .|=..|...|.+++|.++-+.-..- =-.||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222223333456788999999999888753 3556788899999999886543221 112555556666667
Q ss_pred CChhHHHHHHHHH----------HHCCC---------CCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhh
Q 005481 193 GYSDKGLLLFRKM----------QEHGE---------IPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVI 253 (694)
Q Consensus 193 g~~~~A~~~~~~m----------~~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 253 (694)
++.+.|++.|++- +.... +-|...|.--..-.-..|+.+.|..++..+..
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------- 940 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------- 940 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------
Confidence 8888888888753 11111 01222222222233344555555555544322
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccH
Q 005481 254 AGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALV 333 (694)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 333 (694)
|-+++...+-.|+.++|-++-++- .|..+...+...|-..|++.+|+..|.+.+. |+..|+.|-..+.-
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHH
Confidence 233445555567777776665543 4556677788899999999999999988653 44555544333221
Q ss_pred HHHHH------------HHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC--------------CCChhhHH
Q 005481 334 EQGKQ------------IHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP--------------VKNVVTWT 387 (694)
Q Consensus 334 ~~a~~------------i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------------~~~~~~~~ 387 (694)
++-.. .-.+..+.|.. ...-+-.|-|.|.+.+|+++--+-. ..|+...+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 11110 11111122211 1223446777787777776522211 23555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC----hhHHHHHHHH
Q 005481 388 VIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR----IEHYSCIVDS 463 (694)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~ 463 (694)
.-..-|..+.++++|..++-..++ |...+..|...+ +.-..++-+.|.....-.|+ ......+.+.
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 666677788888888888766554 445555565443 23333344444332222343 3356677788
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 005481 464 LGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLEL 504 (694)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~ 504 (694)
+.++|.+..|-+-|.+++.+ -.-+.++.+.||.++
T Consensus 1155 c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcce
Confidence 88999999988888887533 123445556666553
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=0.00011 Score=72.00 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=100.4
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHH-HHHH-hcCCHH
Q 005481 326 VFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVII-TGYG-KHGLAK 400 (694)
Q Consensus 326 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li-~~~~-~~g~~~ 400 (694)
.+...++.++|.-.|..+.... +.+...|.-|+..|...|++.+|.-.-+... ..+..+.+.+. ..+. .-.--+
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH
Confidence 3344455555544444443322 1245566667777777777666654332211 12222222221 1111 112246
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005481 401 EAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIES 479 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 479 (694)
+|.+++++-+. +.|+. ...+.+...|...|..++++.+++.... ..||....+.|.+.+...+.+++|++.|..
T Consensus 422 KAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 422 KAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88888888776 67887 4677777889999999999999999877 569999999999999999999999999987
Q ss_pred C-CCCCC
Q 005481 480 M-PVKPS 485 (694)
Q Consensus 480 ~-~~~p~ 485 (694)
. .+.|+
T Consensus 497 ALr~dP~ 503 (564)
T KOG1174|consen 497 ALRQDPK 503 (564)
T ss_pred HHhcCcc
Confidence 6 56665
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.5e-05 Score=77.46 Aligned_cols=241 Identities=13% Similarity=0.068 Sum_probs=152.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhcc
Q 005481 255 GSLVDFYVKCGCLVEARRVFDLIEQ--KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFAL 332 (694)
Q Consensus 255 ~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 332 (694)
..|.++..+..+++.|.+.++...+ .++.-++....+|...|.+.+.........+.|-.. ..-|+.+-.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak------- 299 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAK------- 299 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHH-------
Confidence 3456666666777777777766543 233345556667777777777666665544433110 000111000
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005481 333 VEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLD 412 (694)
Q Consensus 333 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (694)
....+..+|.+.++++.|...|.+...+... -....+....++++.......-
T Consensus 300 ---------------------~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~- 352 (539)
T KOG0548|consen 300 ---------------------ALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY- 352 (539)
T ss_pred ---------------------HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh-
Confidence 1112445777788889998888875522111 1112233445666666555544
Q ss_pred CCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHH
Q 005481 413 DVEPDGV-AYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIW 489 (694)
Q Consensus 413 g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 489 (694)
+.|+.. -...-.+.+.+.|++..|...|.++++.. +-|...|....-+|.+.|.+.+|++=.+.. ...|+ ...|
T Consensus 353 -~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 353 -INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred -hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 445442 23333667788999999999999998822 335778999999999999999998876665 44555 3345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhc
Q 005481 490 QTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADA 533 (694)
Q Consensus 490 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 533 (694)
.-=..++....+++.|.+.|++.++.+|++......+..++...
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 55566677778999999999999999999877766666666543
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.67 E-value=2.7e-05 Score=82.55 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=79.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005481 421 YLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACR 497 (694)
Q Consensus 421 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~ 497 (694)
+..+...|.+.|++++|.++.+..+. ..|+ ++.|..-...|-+.|++++|.+.++.. ...+ |..+-+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34445556677777777777777776 3455 566777777777777777777777766 2333 3444444455566
Q ss_pred hcCChHHHHHHHHHHHcCC--CCC-------cchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 498 VHGDLELGREVGEILLRLD--GDN-------PVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 498 ~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
+.|+.++|+..+......+ |.. .......+.+|.+.|++..|.+.+..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777765444 211 01123456778888888888777666543
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=1.6e-06 Score=85.51 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=116.9
Q ss_pred HHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c
Q 005481 356 NSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSH----S 431 (694)
Q Consensus 356 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~ 431 (694)
.....+|...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCc
Confidence 33445677889999999988876 5566667788899999999999999999987 34454 34444444432 3
Q ss_pred CcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh-HHHHHH
Q 005481 432 GLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDL-ELGREV 508 (694)
Q Consensus 432 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~-~~a~~~ 508 (694)
..+.+|..+|+++...+ .++..+.+.+.-+....|++++|.+++++. ...|+ +.+...++-.....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 46899999999997743 577888999999999999999999999886 43443 55666777777777877 778889
Q ss_pred HHHHHcCCCCCc
Q 005481 509 GEILLRLDGDNP 520 (694)
Q Consensus 509 ~~~~~~~~p~~~ 520 (694)
..++....|+++
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 999888899764
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=2.4e-05 Score=81.14 Aligned_cols=294 Identities=11% Similarity=-0.040 Sum_probs=162.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChh---hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCcc-chHHHH
Q 005481 252 VIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVI---SWSSLILGYAQEENLAEAMELFRQLRERSLQVDGF-VLSSMM 324 (694)
Q Consensus 252 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll 324 (694)
..+..+...|...|+.+++.+.+....+ .+.. ........+...|++++|.+.+++..+. .|+.. .+.. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~ 83 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-h
Confidence 3444444555555555555444443221 1111 1222233456677778888777777664 34332 2221 1
Q ss_pred HHHhh----hccHHHHHHHHHHHHhcCCCCC-chHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhc
Q 005481 325 GVFAD----FALVEQGKQIHAYAAKVPSGLD-TSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKH 396 (694)
Q Consensus 325 ~~~~~----~~~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 396 (694)
..+.. .+..+.+.+.... ..+..|+ ......+...+...|++++|...+++.. ..+...+..+...|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 11222 2333334333332 1112222 2333455567778888888888888766 23456677788888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHH-H--HHHHHHHhcCCh
Q 005481 397 GLAKEAVGLFRKMLLDDV-EPDG--VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHY-S--CIVDSLGRAGRL 470 (694)
Q Consensus 397 g~~~~A~~~~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~ 470 (694)
|++++|...+++...... .|+. ..+..+...+...|++++|..+++.+.......+..... + .+...+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776422 1232 234466777788888999988888875422111111111 1 223333344432
Q ss_pred HHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHcCC-C--------CCcchHHHHHhHHHhcC
Q 005481 471 DEAKNL---IESM-PVKPS---IAIWQTLLSACRVHGDLELGREVGEILLRLD-G--------DNPVNYVMMSNIHADAG 534 (694)
Q Consensus 471 ~~A~~~---~~~~-~~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g 534 (694)
+.+.+. .... +..|. .........++...|+.+.|...++.+.... . .........+.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 1111 11011 1222345556778888999998888876422 1 12345567778889999
Q ss_pred CchHHHHHHHHHHhCC
Q 005481 535 SWNECERLRKLARSKG 550 (694)
Q Consensus 535 ~~~~a~~~~~~m~~~g 550 (694)
++++|.+.+......+
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887643
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=9.7e-07 Score=77.60 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=91.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005481 404 GLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-P 481 (694)
Q Consensus 404 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 481 (694)
.+|++.++ +.|+. +..+..++...|++++|...|+.+.. +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 44554 44556677788888888888888876 444 4667788888888888888888888887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHH
Q 005481 482 VKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHA 531 (694)
Q Consensus 482 ~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 531 (694)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344 56778888888888899999999999999999988888877766544
No 102
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.00037 Score=71.75 Aligned_cols=408 Identities=12% Similarity=0.083 Sum_probs=208.3
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--h
Q 005481 85 MCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNS--IIDMYS--K 160 (694)
Q Consensus 85 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--ll~~y~--~ 160 (694)
++-+..+|++++|......+...+ +-|...+..-+-+..+.+.+++|..+... .+. ..+++. +=.+|+ +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 455667788888888888887654 33445556666667777777777643322 211 111111 223343 6
Q ss_pred cCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHcccCCchHHHHHHHH
Q 005481 161 CGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIP-DEFTFTSTLKACGSLGSVGGGTQIHGF 239 (694)
Q Consensus 161 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~ 239 (694)
.+..|+|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-.. .-..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------LQVQ 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------hhHH
Confidence 6778888888875555555455556667777888888888888887665421 11112222221111 1110
Q ss_pred HHHhC-CCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhc--------CCCCh----------hhHHHHHHHHHhCCCHHH
Q 005481 240 LITSG-FPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLI--------EQKSV----------ISWSSLILGYAQEENLAE 300 (694)
Q Consensus 240 ~~~~g-~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~----------~~~~~li~~~~~~g~~~~ 300 (694)
..+.- ..+..+-..+-...-.+...|++.+|+++++.. .+.|. ..---|...+...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11111 111112222222334455666666666666654 11111 011123344455666666
Q ss_pred HHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHH-HHHHHHccCC
Q 005481 301 AMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLID-EATELFNEMP 379 (694)
Q Consensus 301 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~ 379 (694)
|..++...++.. .+|....... -|.|+.+-.-..-++ .+...|+...
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~-------------------------------~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVA-------------------------------VNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHH-------------------------------hcchhhhccccccCchHHHHHHHHHH
Confidence 666666655542 2232221111 111111110000000 1122222111
Q ss_pred --------------CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCcHHHHHHHHH
Q 005481 380 --------------VKNVVTW-TVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSH--SGLVEESQEYFS 442 (694)
Q Consensus 380 --------------~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~--~g~~~~a~~~~~ 442 (694)
++..+.. +.++..|. +..+.+.++..... +..|.. .+..++..+.. ......+.+++.
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1111222 22333332 22333333333222 233433 44555555432 235677788877
Q ss_pred HHhhccCCCCC--hhHHHHHHHHHHhcCChHHHHHHHH--------hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005481 443 RLCNDKRMKPR--IEHYSCIVDSLGRAGRLDEAKNLIE--------SM-PVKPSIAIWQTLLSACRVHGDLELGREVGEI 511 (694)
Q Consensus 443 ~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~--------~~-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 511 (694)
...+. .|. ..+.-.++......|+++.|.+++. .. .+.-.+.+..++...+.+.++.+-|..++..
T Consensus 366 ~~~~~---~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 366 QFADG---HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred HHhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHH
Confidence 77652 233 4456677888899999999999998 43 2333455667777777777777777777777
Q ss_pred HHcC----CCC---CcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 512 LLRL----DGD---NPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 512 ~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
++.- .+. -...+..++..-.+.|+-++|..+++++.+
T Consensus 443 Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 443 AIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 6531 222 223344455556677999999999999876
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=3.2e-06 Score=81.94 Aligned_cols=178 Identities=13% Similarity=0.020 Sum_probs=103.0
Q ss_pred chHHHHHhhhhhhcCCHHHHHHHHccCCC--CC-h---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 005481 352 TSVSNSIVDMYLKCGLIDEATELFNEMPV--KN-V---VTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV----AY 421 (694)
Q Consensus 352 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~ 421 (694)
...+..+...|.+.|++++|...|+++.. |+ . ..|..+..+|...|++++|+..|+++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 33444555556666666666666665542 21 1 24455556666666666666666666653 22221 23
Q ss_pred HHHHHHHHcc--------CcHHHHHHHHHHHhhccCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 005481 422 LAVLSACSHS--------GLVEESQEYFSRLCNDKRMKPRIE-HYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTL 492 (694)
Q Consensus 422 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 492 (694)
..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3333344332 4555666666665542 23321 11111100 0000000 0011244
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCC---cchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGDN---PVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
...+...|+++.|...++++++..|++ +.++..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556788899999999999999987765 478899999999999999999999888754
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=1.2e-06 Score=77.03 Aligned_cols=106 Identities=12% Similarity=0.011 Sum_probs=92.6
Q ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 005481 439 EYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLD 516 (694)
Q Consensus 439 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 516 (694)
.+|++..+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45666655 4565 3567888999999999999999987 4445 57789999999999999999999999999999
Q ss_pred CCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 517 GDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 517 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
|+++.++..++.++...|+.++|...++...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998764
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=0.00013 Score=75.77 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=147.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHH-HHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHH
Q 005481 179 LITWNAMIAGYVLAGYSDKGLLLFRKMQEHGE-IPDEFTFTS-TLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGS 256 (694)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 256 (694)
...|..+...+...|+.+++...+....+... .++...... ....+...|+++.+.++++.+.+..+ .+...++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P---~~~~a~~~ 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP---RDLLALKL 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHH
Confidence 34566666677777777777666666544321 122221111 12234456677777777777666544 22222221
Q ss_pred ---HHHHHHHcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhh
Q 005481 257 ---LVDFYVKCGCLVEARRVFDLIEQKSV---ISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADF 330 (694)
Q Consensus 257 ---li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 330 (694)
+.......+..+.+.+.++.....+. .....+...+...|++++|...+++..+. .|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~-------------- 146 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPD-------------- 146 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC--------------
Confidence 11111223334444444433221111 22223334455555566666655555543 222
Q ss_pred ccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC-----CCh--hhHHHHHHHHHhcCCHHHHH
Q 005481 331 ALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV-----KNV--VTWTVIITGYGKHGLAKEAV 403 (694)
Q Consensus 331 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~~~~A~ 403 (694)
+...+..+...|...|++++|...+++... ++. ..|..+...+...|++++|+
T Consensus 147 --------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 147 --------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred --------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 344455566666677777777777666542 121 23455677777788888888
Q ss_pred HHHHHHHHCCC-CCCHHHH-H--HHHHHHHccCcHHHHHHH---HHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005481 404 GLFRKMLLDDV-EPDGVAY-L--AVLSACSHSGLVEESQEY---FSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNL 476 (694)
Q Consensus 404 ~~~~~m~~~g~-~pd~~t~-~--~ll~a~~~~g~~~~a~~~---~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 476 (694)
.+|++...... .+..... . .++.-+...|..+.+.+. .........-..........+.++...|+.++|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 88887754322 1111111 1 223333333433322222 111111000011111222456677788888888888
Q ss_pred HHhCC--CCC---CH----HHHHHHHH--HHHhcCChHHHHHHHHHHHcC
Q 005481 477 IESMP--VKP---SI----AIWQTLLS--ACRVHGDLELGREVGEILLRL 515 (694)
Q Consensus 477 ~~~~~--~~p---~~----~~~~~ll~--a~~~~g~~~~a~~~~~~~~~~ 515 (694)
++.+. ... .. .+...++. ++...|+.+.|.+.+..++.+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87761 111 11 12222222 456889999999998888754
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00019 Score=67.30 Aligned_cols=406 Identities=12% Similarity=0.044 Sum_probs=210.4
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcccHHH-HHHHHHhc
Q 005481 116 LSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA--KSLITWNA-MIAGYVLA 192 (694)
Q Consensus 116 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~ 192 (694)
+.+++..+.+..++..+.+++..-.+.. +.+..-.+.|...|-...++..|...++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444433332 11334444555555556666666666655543 21111211 12344566
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHH--HcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 005481 193 GYSDKGLLLFRKMQEHGEIPDEFTFTSTLKA--CGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEA 270 (694)
Q Consensus 193 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A 270 (694)
+.+.+|+.+...|... |+...-..-+.+ .-+.+++..+..+.++.... .+..+.+...-...+.|+++.|
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHH
Confidence 7777777777766542 222211111222 22456666666666554322 2334444455566788999999
Q ss_pred HHHHhhcCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccc----hHHHHHHHhhhccHHHHHHHHHH
Q 005481 271 RRVFDLIEQ----KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFV----LSSMMGVFADFALVEQGKQIHAY 342 (694)
Q Consensus 271 ~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~~~~~~~~~~~a~~i~~~ 342 (694)
.+-|+...+ .....||.-+.. .+.|+++.|+++..++.++|++-.... ..-.+.+ ..+..-..++..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHHHH
Confidence 999988765 245667755544 467889999999999998887532110 0000000 000000111111
Q ss_pred HHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005481 343 AAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV-----KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD 417 (694)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 417 (694)
. -+..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-++..+.- -
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-P 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-C
Confidence 0 011223334456789999999999999984 3677765543221 245555666656666654332 2
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 005481 418 GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLG-RAGRLDEAKNLIESMPVKPSIAIWQTLLSA- 495 (694)
Q Consensus 418 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a- 495 (694)
..||..++-.|++..-++-|..++.+-...--.-.+...|+ |++++. ..-..++|++-++.+...--...-..-+..
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999988888764322000001223333 334333 344667777666554100000000011111
Q ss_pred HHhcCChHH----HHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 496 CRVHGDLEL----GREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 496 ~~~~g~~~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
-.++.+-++ +.+-++..+++- ......-+++|.+..++..+.+.|..-.+
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 112222222 222333333332 12445567888999999999998886554
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.4e-07 Score=59.08 Aligned_cols=33 Identities=39% Similarity=0.618 Sum_probs=26.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhccC
Q 005481 42 GFSFDLMLNNDLIDMYAKCGEMNGACAVFDKML 74 (694)
Q Consensus 42 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 74 (694)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=5.7e-06 Score=76.96 Aligned_cols=117 Identities=10% Similarity=0.089 Sum_probs=91.6
Q ss_pred cCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHH
Q 005481 431 SGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSAC-RVHGD--LELG 505 (694)
Q Consensus 431 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~-~~~g~--~~~a 505 (694)
.++.+++...++...+.. +.+...|..|...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777766621 345677888888888888888888888877 4455 466677777763 56676 5899
Q ss_pred HHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 506 REVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 506 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.++++++++.+|+++.++..++..+...|++++|...++++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998764
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00024 Score=83.81 Aligned_cols=322 Identities=10% Similarity=-0.080 Sum_probs=161.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC----CC---c---c--cHHHHHHHHHhc
Q 005481 125 VLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA----KS---L---I--TWNAMIAGYVLA 192 (694)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~----~~---~---~--~~~~li~~~~~~ 192 (694)
..|+.+.+..++..+.......++.........+...|++++|...++.... .+ . . ....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3455555555554432111112222333344445566777776666654321 11 0 0 111122344567
Q ss_pred CChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHcccCCchHHHHHHHHHHHhCCCC---CcchhhHHHHHHHHHHcC
Q 005481 193 GYSDKGLLLFRKMQEHGEIPDE----FTFTSTLKACGSLGSVGGGTQIHGFLITSGFPY---SVKTVIAGSLVDFYVKCG 265 (694)
Q Consensus 193 g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~li~~y~~~g 265 (694)
|++++|...+++....-...+. .....+...+...|+++.|...+.......... .........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 7777777777776553111111 122334444556777777777776665432110 011234455566677778
Q ss_pred CHHHHHHHHhhcCC-------CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CccC--ccchHHHHHHHhhh
Q 005481 266 CLVEARRVFDLIEQ-------KS----VISWSSLILGYAQEENLAEAMELFRQLRERS--LQVD--GFVLSSMMGVFADF 330 (694)
Q Consensus 266 ~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd--~~t~~~ll~~~~~~ 330 (694)
+++.|...+++..+ ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 88887777665431 11 1223344455666788888887777765421 1111 12222333445566
Q ss_pred ccHHHHHHHHHHHHhcCCCCC-chHH-----HHHhhhhhhcCCHHHHHHHHccCCCCCh-------hhHHHHHHHHHhcC
Q 005481 331 ALVEQGKQIHAYAAKVPSGLD-TSVS-----NSIVDMYLKCGLIDEATELFNEMPVKNV-------VTWTVIITGYGKHG 397 (694)
Q Consensus 331 ~~~~~a~~i~~~~~~~~~~~~-~~~~-----~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g 397 (694)
|+.+.|...+..+........ ...+ ...+..+...|+.+.|.+++.....+.. ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 777777766665543211000 0000 1112334456777777777655543211 11234555666677
Q ss_pred CHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 398 LAKEAVGLFRKMLLD----DVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 398 ~~~~A~~~~~~m~~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
++++|...+++.... |..++. .+...+..++...|+.++|...+.++.+
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777766542 222222 2444455556666777777766666655
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=8.5e-06 Score=89.69 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=99.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHH
Q 005481 382 NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSC 459 (694)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 459 (694)
++..+-.|.....+.|++++|..+++...+ +.||. .....+...+.+.+.+++|...+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466677777777778888888888888877 66776 3566677777888888888888887766 3454 556677
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHH
Q 005481 460 IVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYV 524 (694)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 524 (694)
+..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.++|..+|+++++...+-...|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 777788888888888888876 22333 667777777788888888888888888776654444433
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=8.9e-06 Score=83.15 Aligned_cols=216 Identities=13% Similarity=0.143 Sum_probs=158.3
Q ss_pred HcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHH
Q 005481 224 CGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAE 300 (694)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 300 (694)
+.+.|++.+|.-.|+..++..+ .+...|.-|....+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP---QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 3467888888888888888887 6788888888888888888888888777654 456777778888999999999
Q ss_pred HHHHHHHHHhcCCc--------cCccchHHHHHHHhhhccHHHHHHH-HHHHHhcCCCCCchHHHHHhhhhhhcCCHHHH
Q 005481 301 AMELFRQLRERSLQ--------VDGFVLSSMMGVFADFALVEQGKQI-HAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEA 371 (694)
Q Consensus 301 A~~~~~~m~~~g~~--------pd~~t~~~ll~~~~~~~~~~~a~~i-~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 371 (694)
|+..|+.......+ ++..+-.. ........+....++ ++.....+...|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999887653210 01110000 122222333344444 44445566567888888888888889999999
Q ss_pred HHHHccCC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 372 TELFNEMP--V-KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 372 ~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
.+.|+... + .|...||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|..+|-.++.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999876 3 3777899999999999999999999999988 788874 444566678899999999888876654
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.0024 Score=65.20 Aligned_cols=420 Identities=12% Similarity=0.087 Sum_probs=197.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhccCC--CC-cccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHH
Q 005481 44 SFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE--RN-VVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNI 120 (694)
Q Consensus 44 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 120 (694)
+-|+.+|+.||.-+... ..++++..++++.. |+ ...|..-|.+-.+..+++....+|.+.+..-. +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 56788888888877655 88888888888754 43 44688888888888888888888888765432 333444444
Q ss_pred HHhccc-CChHHHH----HHHHHHH-HhCCCCCh-hHHHHHHHH---------HHhcCChHHHHHHHccCCCC---Cc--
Q 005481 121 KASGVL-SSVENGM----QIHGMCM-KSGFEWNP-VVGNSIIDM---------YSKCGRINEAARMFDVMPAK---SL-- 179 (694)
Q Consensus 121 ~a~~~~-~~~~~a~----~~~~~~~-~~g~~~~~-~~~~~ll~~---------y~~~g~~~~A~~~f~~~~~~---~~-- 179 (694)
.--.+. ++....+ +.|+.++ +.|+++-. ..|+..+.. |....+++..+++++++... |.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 332221 2222222 2333333 33544332 345554433 33445677778888777642 11
Q ss_pred -----ccHHHHHHHH-------HhcCChhHHHHHHHHHHH--CCCCCChhh---------------HHHHHHHHcccCCc
Q 005481 180 -----ITWNAMIAGY-------VLAGYSDKGLLLFRKMQE--HGEIPDEFT---------------FTSTLKACGSLGSV 230 (694)
Q Consensus 180 -----~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~~~ 230 (694)
..|..=|+.. -+...+..|.+++++... .|..-+..+ |..+|.-=-..+--
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 1221111111 123345667777776643 343322222 22222211100000
Q ss_pred --------hHHHHHHHHHHH-hCCCCCcchhh-H----HHHHHHHHHcCCH-------HHHHHHHhhcCCC----ChhhH
Q 005481 231 --------GGGTQIHGFLIT-SGFPYSVKTVI-A----GSLVDFYVKCGCL-------VEARRVFDLIEQK----SVISW 285 (694)
Q Consensus 231 --------~~a~~~~~~~~~-~g~~~~~~~~~-~----~~li~~y~~~g~~-------~~A~~~f~~~~~~----~~~~~ 285 (694)
....-++++.+. .+.. ++... + ...-+.+...|+. +++.+++++..+. +...|
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111 1111 11100 0 0011122223322 2333333332211 11222
Q ss_pred HHHHHHH---HhCCCHHHHHHHHHHHHhc-CCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCC-CchHHHHHhh
Q 005481 286 SSLILGY---AQEENLAEAMELFRQLRER-SLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGL-DTSVSNSIVD 360 (694)
Q Consensus 286 ~~li~~~---~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~ 360 (694)
..+..-- .+....+.....+.+++.. .+.|+ .+|...+....+..-++.|+.+|..+.+.+..+ ++.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 2221110 0111234444455554442 22232 445556666666666666777777666665555 6666666666
Q ss_pred hhhhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHH
Q 005481 361 MYLKCGLIDEATELFNEMPV--K-NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG--VAYLAVLSACSHSGLVE 435 (694)
Q Consensus 361 ~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~ 435 (694)
.|+ .++.+-|.++|+--.. + +..--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++.
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 555 3556666666654331 2 2222334445555556666666666666665555544 35566665555666666
Q ss_pred HHHHHHHHHhhccC--CCCChhHHHHHHHHHHhcCCh
Q 005481 436 ESQEYFSRLCNDKR--MKPRIEHYSCIVDSLGRAGRL 470 (694)
Q Consensus 436 ~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~ 470 (694)
.+.++-+++...+. ..|...+-..+++.|+-.+..
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 66555555544333 333333333444444444443
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2e-07 Score=58.29 Aligned_cols=33 Identities=45% Similarity=0.668 Sum_probs=26.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHccCC
Q 005481 143 GFEWNPVVGNSIIDMYSKCGRINEAARMFDVMP 175 (694)
Q Consensus 143 g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~ 175 (694)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 114
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.46 E-value=0.00037 Score=66.78 Aligned_cols=174 Identities=11% Similarity=-0.002 Sum_probs=109.4
Q ss_pred CceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHH---H
Q 005481 112 NEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNP-VVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMI---A 187 (694)
Q Consensus 112 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~ 187 (694)
+..--.-+-+.+...|++..|..-|..+++. .|+. .++-.-...|...|+...|+.=|++..+--+..+.+-| .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 3333445556666777787777776666653 2332 22333346788889888888888777654333333333 4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCH
Q 005481 188 GYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCL 267 (694)
Q Consensus 188 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~ 267 (694)
.+.+.|.++.|..=|+..++.. |+..+- ..+..+.--.++- ......+..+.-.|+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~------------------~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH------------------WVLVQQLKSASGSGDC 171 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH------------------HHHHHHHHHHhcCCch
Confidence 6788999999999999998754 433221 2222222211211 1222234445667888
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 005481 268 VEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRE 310 (694)
Q Consensus 268 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (694)
..|+.....+.+ -|...+..-..+|...|++..|+.-++..-+
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK 217 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 888888877654 3666777778899999999999887776654
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=7.3e-06 Score=85.86 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=121.3
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHh
Q 005481 249 VKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFA 328 (694)
Q Consensus 249 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 328 (694)
|-......+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.++ +||...
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~l--------- 459 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRL--------- 459 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchh---------
Confidence 34445556677777777777777777654 35666777777777777777766665552 444444
Q ss_pred hhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005481 329 DFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRK 408 (694)
Q Consensus 329 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (694)
|..|.+.....--+++|.++++....+--..|+.+ ....++++++.+.|+.
T Consensus 460 --------------------------yc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~ 510 (777)
T KOG1128|consen 460 --------------------------YCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLER 510 (777)
T ss_pred --------------------------HHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHH
Confidence 44444444444445555555544332211111111 1235667777777766
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CC
Q 005481 409 MLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PV-KP 484 (694)
Q Consensus 409 m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p 484 (694)
-.+ +.|-. .||-.+..+..+.++++.|.+.|..-.. +.|+ .+.||.+-.+|.+.|+-.+|...+.+. .. .-
T Consensus 511 sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 511 SLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred Hhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 555 23332 4666666666666777777777766655 4554 445566666666666555555555554 11 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 005481 485 SIAIWQTLLSACRVHGDLELGREVGEILLRL 515 (694)
Q Consensus 485 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 515 (694)
+-.+|...+-...+-|.++.|.+++.+++.+
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 2334555555555666666666666666544
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=1.6e-05 Score=88.80 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=162.9
Q ss_pred CchHHHHHhhhhhhcCCHHHHHHHHccCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005481 351 DTSVSNSIVDMYLKCGLIDEATELFNEMPV--------KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYL 422 (694)
Q Consensus 351 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 422 (694)
+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. .--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666777778888999999999888762 13457999998888889888999999999883 22245788
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh
Q 005481 423 AVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS---IAIWQTLLSACRV 498 (694)
Q Consensus 423 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~a~~~ 498 (694)
.|+..|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-++|..++.++ ..-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999776 56678999999999999999999999876 32232 3344555555678
Q ss_pred cCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCc
Q 005481 499 HGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLK 552 (694)
Q Consensus 499 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 552 (694)
+|+.+.+..+|+.++.-.|.-...|..++++=.+.|..+.++.+|+++...++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988899999999999999999999999999887653
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=3.8e-06 Score=72.47 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=85.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHH
Q 005481 453 RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIH 530 (694)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 530 (694)
+.+..-.+...+...|++++|..+|+-. ...|. ..-|-.|...|...|++++|+.+|.++..++|++|.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455666777788999999999999887 45554 566899999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 005481 531 ADAGSWNECERLRKLARSK 549 (694)
Q Consensus 531 ~~~g~~~~a~~~~~~m~~~ 549 (694)
...|+.+.|++.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=3.3e-05 Score=71.83 Aligned_cols=154 Identities=10% Similarity=0.140 Sum_probs=116.1
Q ss_pred hhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 005481 359 VDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQ 438 (694)
Q Consensus 359 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 438 (694)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++.++.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446778888877765554332221 01223567788888888887743 345578888889999999999999
Q ss_pred HHHHHHhhccCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005481 439 EYFSRLCNDKRMKP-RIEHYSCIVDSL-GRAGR--LDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEIL 512 (694)
Q Consensus 439 ~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 512 (694)
..|+++.+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 456 467788888864 67787 59999999988 5555 4667888888999999999999999999
Q ss_pred HcCCCCCcchHH
Q 005481 513 LRLDGDNPVNYV 524 (694)
Q Consensus 513 ~~~~p~~~~~~~ 524 (694)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987655443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=1.8e-05 Score=73.23 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 005481 414 VEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQT 491 (694)
Q Consensus 414 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 491 (694)
..|+......+-.++...|+-+....+.......+ ..+......++....+.|++.+|...|.+. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 34543333555566666777777777666654312 234455566788888888888888888887 45567888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 492 LLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+..+|-+.|+.++|...+.+++++.|.++..+.+|+-.|.-.|+.+.|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8888888888888888888888888888888888888888888888888888877654
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=5e-05 Score=71.12 Aligned_cols=303 Identities=9% Similarity=0.032 Sum_probs=150.3
Q ss_pred HHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC--ChhhHHH-HHHHHH
Q 005481 217 FTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK--SVISWSS-LILGYA 293 (694)
Q Consensus 217 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~ 293 (694)
+.+++..+.+..++..+.+++..-.+..+ .+....+.|...|....++..|-..++++... ...-|-. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 33444444444555555555555444433 24444555666666666666666666665532 1111111 123445
Q ss_pred hCCCHHHHHHHHHHHHhcCCccCccchHHHHHHH--hhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHH
Q 005481 294 QEENLAEAMELFRQLRERSLQVDGFVLSSMMGVF--ADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEA 371 (694)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 371 (694)
+.+.+.+|+.+...|... |+...-..-+.+. .+.+++..++.+.+..-. +.+..+.+...-...+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHH
Confidence 666777777777666542 1111111111110 112222222222222111 11222222233334455555555
Q ss_pred HHHHccCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhc
Q 005481 372 TELFNEMPV----KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCND 447 (694)
Q Consensus 372 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 447 (694)
.+-|+...+ .....||.-+ +..+.|++..|++...++++.|++.-+. + ..|...++..+ +..
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-l--------gIGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-L--------GIGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-c--------CccceeccCch-hcc---
Confidence 555554442 1233343322 2334455555555555555555431110 0 00000000000 000
Q ss_pred cCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 005481 448 KRMKPRIEHYSCI-------VDSLGRAGRLDEAKNLIESMP----VKPSIAIWQTLLSACRVHGDLELGREVGEILLRLD 516 (694)
Q Consensus 448 ~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 516 (694)
-.|-.-+-+.+ ...+.+.|+++.|.+.+..|| .+.|++|...+.-. -..+++..+.+-+.-+++++
T Consensus 230 --gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 --GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred --cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 00111122333 344678899999999999994 33467776554322 23566777888888889999
Q ss_pred CCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 517 GDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 517 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
|-.+.++..+.-+|++..-++-|..++.+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 97789999999999999999888877754
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=2e-05 Score=76.31 Aligned_cols=180 Identities=15% Similarity=0.040 Sum_probs=125.9
Q ss_pred ccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCC--CchHHHHHhhhhhhcCCHHHHHHHHccCCC--C-Chh---hHHH
Q 005481 317 GFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGL--DTSVSNSIVDMYLKCGLIDEATELFNEMPV--K-NVV---TWTV 388 (694)
Q Consensus 317 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 388 (694)
...+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++.. | +.. .+..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3456666778889999999999999988765432 124567788999999999999999998863 2 222 4555
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHH
Q 005481 389 IITGYGKH--------GLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSC 459 (694)
Q Consensus 389 li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 459 (694)
+..++.+. |+.++|.+.|+++... .|+.. ....+..... .. .... .....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HHHHH
Confidence 66666654 7899999999999984 56543 2222211100 00 0000 11235
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 005481 460 IVDSLGRAGRLDEAKNLIESM----PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDG 517 (694)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 517 (694)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788999999999998886 3233 356788899999999999999998888776555
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=2e-05 Score=82.73 Aligned_cols=189 Identities=16% Similarity=0.143 Sum_probs=139.9
Q ss_pred CCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005481 347 PSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLS 426 (694)
Q Consensus 347 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 426 (694)
+++|--..-..+...+.++|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34455556667788889999999999999875 4677788899999999999988888776 4788888988888
Q ss_pred HHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 005481 427 ACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLEL 504 (694)
Q Consensus 427 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~ 504 (694)
......-+++|.++++..... .-..+.....+.++++++.+.|+.. .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888777888888888765431 1111222233467777777777654 3333 35567777777777788888
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 505 GREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 505 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
|.+.|.+.+.++|++...|++++-+|.+.|+..+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888777777654
No 123
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=0.00014 Score=72.70 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=114.5
Q ss_pred hhhcC-CHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcH
Q 005481 362 YLKCG-LIDEATELFNEMP---VKNVVTWTVIITGYGKHGLA--KEAVGLFRKMLLDDVEP-DGVAYLAVLSACSHSGLV 434 (694)
Q Consensus 362 y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~ 434 (694)
+.+.| ++++++..++++. .++..+|+.....+.+.|+. ++++.+++++++. .| |..+|.....++.+.|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhH
Confidence 33344 4566777666654 34555677655555555553 6678888888873 34 446777777778888888
Q ss_pred HHHHHHHHHHhhccCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CC
Q 005481 435 EESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRA---GRL----DEAKNLIESM-PVKP-SIAIWQTLLSACRVH----GD 501 (694)
Q Consensus 435 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~----g~ 501 (694)
+++++.++++++.. .-+...|+....++.+. |.+ ++++++..++ ...| |...|+-+...+... ++
T Consensus 159 ~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 159 EDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 88888888887721 22345566665555444 222 4566666554 4445 477899998888774 34
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHhHHHhc
Q 005481 502 LELGREVGEILLRLDGDNPVNYVMMSNIHADA 533 (694)
Q Consensus 502 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 533 (694)
..+|...+.++++.+|.++.++..|+++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999864
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=1.7e-05 Score=69.32 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=79.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHH
Q 005481 450 MKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMM 526 (694)
Q Consensus 450 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 526 (694)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 345666777778888888888888776 3334 566778888888888999999999999999999888899999
Q ss_pred HhHHHhcCCchHHHHHHHHHHhC
Q 005481 527 SNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998887764
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00011 Score=80.99 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=111.1
Q ss_pred CCCCchHHHHHhhhhhhcCCHHHHHHHHccCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 005481 348 SGLDTSVSNSIVDMYLKCGLIDEATELFNEMP--VK-NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLA 423 (694)
Q Consensus 348 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ 423 (694)
...++..+-.|.....+.|..++|..+++... .| +...+..++..+.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 34457777888888899999999999999887 34 556788888999999999999999999988 457764 4555
Q ss_pred HHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 005481 424 VLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLS 494 (694)
Q Consensus 424 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 494 (694)
+..++.+.|.+++|..+|+++.. -.|+ ...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 66677889999999999999986 2344 678888899999999999999999887 33444555554443
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.21 E-value=0.00024 Score=79.86 Aligned_cols=228 Identities=17% Similarity=0.134 Sum_probs=161.7
Q ss_pred CCh-hhHHHHHHHHcccCCchHHHHHHHHHHHhC-C-CCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCC-C-hhhHH
Q 005481 212 PDE-FTFTSTLKACGSLGSVGGGTQIHGFLITSG-F-PYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQK-S-VISWS 286 (694)
Q Consensus 212 p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~ 286 (694)
||. ..|..-|.-..+.++++.|+++.+++++.- + +-+.-..+|.+++++-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 345555666666777777777777766542 1 00123457777777777777777788888887652 3 35677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCC-CCchHHHHHhhhhhhc
Q 005481 287 SLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSG-LDTSVSNSIVDMYLKC 365 (694)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~ 365 (694)
.|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+...-+.|..++..+.+.-.. -.+....-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888888774 2345566777777777777778888888877765332 2455667778888899
Q ss_pred CCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHH
Q 005481 366 GLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG--VAYLAVLSACSHSGLVEESQEY 440 (694)
Q Consensus 366 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~ 440 (694)
|+.+.++.+|+... .+-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.|..=...|+-..+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99999999999887 345678999999999999999999999999999888765 3455555544444554443333
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00025 Score=79.08 Aligned_cols=233 Identities=12% Similarity=0.077 Sum_probs=122.0
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHH
Q 005481 249 VKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ--K-SVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMG 325 (694)
Q Consensus 249 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 325 (694)
.+...+..|++.|...+++++|..+.+...+ | ....|-.+...+.+.++..++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------
Confidence 4455666666666666666666666654432 2 223333333355555554444443 2211
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCCHHHH
Q 005481 326 VFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHGLAKEA 402 (694)
Q Consensus 326 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 402 (694)
......++.....+...+...+ .+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 1111112212222222222211 1223444556666666666666666665542 3455555555556555 66666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005481 403 VGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESMP 481 (694)
Q Consensus 403 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 481 (694)
++++.+.+.. +...+++.++.++|..+.. ..|+ ...+--+..... ...+
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~------------~~~~ 218 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVL------------GHRE 218 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHH------------hhhc
Confidence 6665555432 3344455556666666554 2232 111111111111 1111
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHH
Q 005481 482 VKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHA 531 (694)
Q Consensus 482 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 531 (694)
..--..+|--+-..|...++++++..+++.+++.+|+|..+...++..|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22234455556677888899999999999999999999888888888876
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00018 Score=66.89 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=74.6
Q ss_pred HhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 005481 358 IVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLV 434 (694)
Q Consensus 358 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 434 (694)
+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 3444444455555554444432 223334444555555556666666666655542 234445555555555666666
Q ss_pred HHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005481 435 EESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESMPV--KPSIAIWQTLLSACRVHGDLELGREVGEI 511 (694)
Q Consensus 435 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 511 (694)
++|..-|.+..+ +.|+ ...++.|.-.|.-.|+++.|..++...-. ..|..+-..|..+....|++++|+.+..+
T Consensus 151 ~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666655555555 2222 33445555555555555555555554411 11344444454555555555555554443
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=3.9e-06 Score=53.33 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCc
Q 005481 79 VSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNE 113 (694)
Q Consensus 79 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 113 (694)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.4e-06 Score=53.12 Aligned_cols=34 Identities=44% Similarity=0.747 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005481 384 VTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD 417 (694)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 417 (694)
.+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00036 Score=70.53 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=54.3
Q ss_pred ccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 005481 430 HSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGRE 507 (694)
Q Consensus 430 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~ 507 (694)
..|.+++|+..++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 344555555555554441 1122333344445555555555555555544 33344 3334444455555555555555
Q ss_pred HHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 508 VGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 508 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
.+++....+|+|+..|..|+.+|...|+-.++...+.+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555555555555555555554444444444433
No 132
>PLN02789 farnesyltranstransferase
Probab=98.08 E-value=0.00036 Score=69.86 Aligned_cols=181 Identities=11% Similarity=0.082 Sum_probs=131.3
Q ss_pred hhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCc--H
Q 005481 362 YLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGKHG-LAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGL--V 434 (694)
Q Consensus 362 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~--~ 434 (694)
+.+.+..++|..+.+++.. .+..+|+.....+...| ++++++..++++.+.. |+. .+|..-...+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhh
Confidence 4455677788888877663 35557777777777777 6799999999999854 433 456655545556665 3
Q ss_pred HHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCh----HH
Q 005481 435 EESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVK-PSIAIWQTLLSACRVH---GDL----EL 504 (694)
Q Consensus 435 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~a~~~~---g~~----~~ 504 (694)
+++..+++.+.+ +.| +...|+...-++.+.|++++|++.++++ ... -|...|+.....+... |.. +.
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 678888888877 445 4667888888999999999999999998 333 3577788877766554 222 46
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHhHHHhc----CCchHHHHHHHHHH
Q 005481 505 GREVGEILLRLDGDNPVNYVMMSNIHADA----GSWNECERLRKLAR 547 (694)
Q Consensus 505 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~ 547 (694)
+.....++++++|+|.++|..+..++... ++..+|.+......
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 77888899999999999999999999873 34455666655543
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=7.5e-05 Score=76.15 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=91.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005481 422 LAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVH 499 (694)
Q Consensus 422 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~ 499 (694)
.+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++.+. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555556667777777777777652 244 3344666666677777777777765 2233 455566666678899
Q ss_pred CChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 500 GDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 500 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
++++.|+.+++++.++.|++-.+|..|+.+|...|++++|...+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998875
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.00071 Score=68.43 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHH
Q 005481 383 VVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAV-LSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCI 460 (694)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 460 (694)
...+....-.+...|++++|+..++.++. -.||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 33444455566678999999999999887 46777655554 4577899999999999999987 5676 5567788
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchH
Q 005481 461 VDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNE 538 (694)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 538 (694)
.++|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++... .+..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 89999999999999999987 4455688999999999999998776654 3556788999999
Q ss_pred HHHHHHHHHhCC
Q 005481 539 CERLRKLARSKG 550 (694)
Q Consensus 539 a~~~~~~m~~~g 550 (694)
|........++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999999888764
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=9.3e-06 Score=51.19 Aligned_cols=34 Identities=35% Similarity=0.575 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCC
Q 005481 78 VVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKP 111 (694)
Q Consensus 78 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 111 (694)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3679999999999999999999999999888887
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.99 E-value=0.00017 Score=62.83 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=86.6
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005481 405 LFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PV 482 (694)
Q Consensus 405 ~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 482 (694)
.|++.+. ..|+. .....+...+...|++++|.+.|+.+.... +.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 44544 445666677788899999999998887621 235677888888999999999999988876 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcc
Q 005481 483 KP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPV 521 (694)
Q Consensus 483 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 521 (694)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4667777888899999999999999999999998755
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.96 E-value=0.032 Score=57.40 Aligned_cols=430 Identities=12% Similarity=0.068 Sum_probs=229.6
Q ss_pred CCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCC--CcccHHHHHH
Q 005481 110 KPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAK--SLITWNAMIA 187 (694)
Q Consensus 110 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~ 187 (694)
+-|..+|..||+-+... ..++++..++++... ++.....|..-+..-.+..+++..+++|.+...+ ++..|...|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34777888888877665 888888888888764 4556677888888888888899888888887653 6777877776
Q ss_pred HHHh-cCChhH----HHHHHHH-HHHCCCCCChh-hHH---HHHHHHcccCC------chHHHHHHHHHHHhCCCCCcch
Q 005481 188 GYVL-AGYSDK----GLLLFRK-MQEHGEIPDEF-TFT---STLKACGSLGS------VGGGTQIHGFLITSGFPYSVKT 251 (694)
Q Consensus 188 ~~~~-~g~~~~----A~~~~~~-m~~~g~~p~~~-t~~---~ll~a~~~~~~------~~~a~~~~~~~~~~g~~~~~~~ 251 (694)
---+ +|+... ..+.|+- |.+.|+.+-+. .|+ ..+..--..|. ++..++++..++..-+. .-.
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~--nlE 172 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH--NLE 172 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc--cHH
Confidence 3222 333333 2223332 23445444333 222 23332222233 33444555555543332 222
Q ss_pred hhHHHHHHHH-------------HHcCCHHHHHHHHhhcCC------CChh---------------hHHHHHHHHHhCCC
Q 005481 252 VIAGSLVDFY-------------VKCGCLVEARRVFDLIEQ------KSVI---------------SWSSLILGYAQEEN 297 (694)
Q Consensus 252 ~~~~~li~~y-------------~~~g~~~~A~~~f~~~~~------~~~~---------------~~~~li~~~~~~g~ 297 (694)
..|+-....= -+...+..|+++++++.. ++.. .|-.+|.-=..++.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2332211100 011123334444433321 0000 12222221111110
Q ss_pred H--------HHHHHHHHHHH-hcCCccCccc-hHHHHH----HHhhhcc-------HHHHHHHHHHHHhcCCCCCchHHH
Q 005481 298 L--------AEAMELFRQLR-ERSLQVDGFV-LSSMMG----VFADFAL-------VEQGKQIHAYAAKVPSGLDTSVSN 356 (694)
Q Consensus 298 ~--------~~A~~~~~~m~-~~g~~pd~~t-~~~ll~----~~~~~~~-------~~~a~~i~~~~~~~~~~~~~~~~~ 356 (694)
- ....-.+++.. --+..|+..- ++..+. .+...|+ .+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111111 1122222110 011111 1111122 334444444444433333333443
Q ss_pred HHhhhhhhcC---CHHHHHHHHccCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005481 357 SIVDMYLKCG---LIDEATELFNEMP----VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP-DGVAYLAVLSAC 428 (694)
Q Consensus 357 ~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~ 428 (694)
++.+-=-..- ..+.....+++.. ..-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3332111111 1333333333333 2223456677777777777889999999999988888 445666666644
Q ss_pred HccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChH
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM---PVKPS--IAIWQTLLSACRVHGDLE 503 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~a~~~~g~~~ 503 (694)
-.++.+-|.++|+.-.+.+|-.| .--.+.++-+.+.++-..|..+|++. .+.|| ..+|..++.--..-|+..
T Consensus 413 -cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 -CSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred -hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 45788999999998877664333 45567788889999999999999987 23444 467999999888999999
Q ss_pred HHHHHHHHHHcCCCCC----cchHHHHHhHHHhcCCchHHHHHHHHH
Q 005481 504 LGREVGEILLRLDGDN----PVNYVMMSNIHADAGSWNECERLRKLA 546 (694)
Q Consensus 504 ~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 546 (694)
.+..+-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9999888877655521 123345566777777665555444444
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00013 Score=69.21 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIES 479 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 479 (694)
+....-+++..+| +-..+.+++.+|+..|..+++ +.|+ ...|..-..+|.+.|.++.|++-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4455555555554 235677889999999999987 6665 45566668889999999999888877
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhH
Q 005481 480 M-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNI 529 (694)
Q Consensus 480 ~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 529 (694)
. .+.|. ..+|..|..+|...|++++|++.|+++++++|++......|-.+
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 6 66666 55799999999999999999999999999999987555554433
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.7e-05 Score=49.93 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005481 384 VTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP 416 (694)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 416 (694)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 140
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.025 Score=56.58 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=89.8
Q ss_pred HHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 005481 355 SNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLV 434 (694)
Q Consensus 355 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 434 (694)
.+..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-..+... +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566788899999999888889999999999999999999877765432 12347788888999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005481 435 EESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSAC 496 (694)
Q Consensus 435 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~ 496 (694)
.+|..+...+. +..-+.+|.++|++.+|.+.--+.. |......+..-|
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99988876631 2456788899999999887755532 555454444443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.0003 Score=71.85 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=97.5
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGL 433 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 433 (694)
...+|+..+...++++.|..+|+++.+.+...+..|+..+...++-.+|++++++.+... +-|...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566666777888999999998887666666678888888888889999998888642 2244555555566788888
Q ss_pred HHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 005481 434 VEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESMPVKP 484 (694)
Q Consensus 434 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 484 (694)
++.|.++.+++.+ +.|+ ..+|..|+..|.+.|++++|+..++.+|.-|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999998877 5665 5588889999999999999998888886543
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=0.00014 Score=58.42 Aligned_cols=92 Identities=23% Similarity=0.193 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcC
Q 005481 457 YSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAG 534 (694)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 534 (694)
+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|...+++.++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888776 33343 4567777777888888999999999988888888888888888999999
Q ss_pred CchHHHHHHHHHHh
Q 005481 535 SWNECERLRKLARS 548 (694)
Q Consensus 535 ~~~~a~~~~~~m~~ 548 (694)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99998888877654
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.0005 Score=60.65 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=56.3
Q ss_pred cCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHH
Q 005481 431 SGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSI----AIWQTLLSACRVHGDLEL 504 (694)
Q Consensus 431 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~a~~~~g~~~~ 504 (694)
.++.+.+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554322111 0122223345555556666666665554 111232 123334445556666666
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 505 GREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 505 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
|+..++.. .-.+..+..+..++++|.+.|++++|...++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22233345555666666666666666666654
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0066 Score=56.66 Aligned_cols=146 Identities=12% Similarity=0.078 Sum_probs=91.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHH----HHHhc
Q 005481 392 GYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVD----SLGRA 467 (694)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~ 467 (694)
.|...|++++|++..+... .-+....+ ...+.+..+.+-|.+.++.|.. + -+..+.+.|.. ...-.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccc
Confidence 3455566666665555411 11111111 1223445556666666666654 1 22233333333 33344
Q ss_pred CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHH-HHHH
Q 005481 468 GRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECE-RLRK 544 (694)
Q Consensus 468 g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~ 544 (694)
+...+|.-+|++| ...|+..+.+-...++...|++++|+.+++.++..+|.+|.+..+++-.--..|+-.++. +...
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5677888888888 356778888888888888999999999999999999999998888888877888776654 3344
Q ss_pred HHH
Q 005481 545 LAR 547 (694)
Q Consensus 545 ~m~ 547 (694)
..+
T Consensus 267 QLk 269 (299)
T KOG3081|consen 267 QLK 269 (299)
T ss_pred HHH
Confidence 333
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00026 Score=60.00 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC---cchHHHHHhH
Q 005481 458 SCIVDSLGRAGRLDEAKNLIESM-PVKPS----IAIWQTLLSACRVHGDLELGREVGEILLRLDGDN---PVNYVMMSNI 529 (694)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 529 (694)
..++..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444444555555555555444 11122 2233444455555555555555555555555543 2345555555
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 005481 530 HADAGSWNECERLRKLARSK 549 (694)
Q Consensus 530 ~~~~g~~~~a~~~~~~m~~~ 549 (694)
|.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=4.9e-05 Score=57.23 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcC-CchHHHHHHHHHHh
Q 005481 485 SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAG-SWNECERLRKLARS 548 (694)
Q Consensus 485 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 548 (694)
++.+|..+...+...|++++|+..++++++++|+++.+|..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999988765
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=2.5e-05 Score=61.51 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHH
Q 005481 467 AGRLDEAKNLIESM-PVKP---SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERL 542 (694)
Q Consensus 467 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (694)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35556666666555 1122 344555566677777777777777777 666666556666667777777777777777
Q ss_pred HHH
Q 005481 543 RKL 545 (694)
Q Consensus 543 ~~~ 545 (694)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0011 Score=70.95 Aligned_cols=139 Identities=15% Similarity=0.070 Sum_probs=65.3
Q ss_pred CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcc--------CcHHHHHHHHHHHh
Q 005481 380 VKNVVTWTVIITGYGKH-----GLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHS--------GLVEESQEYFSRLC 445 (694)
Q Consensus 380 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 445 (694)
..|...|...+.|.... +...+|..+|++.++ ..||.. .+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45666777776664432 225677888888877 566652 333332222111 11222222222222
Q ss_pred hccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 446 NDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 446 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
.......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 21011122334444444444445555555555554 3444444455555555555555555555555555555544
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.73 E-value=0.00042 Score=71.13 Aligned_cols=99 Identities=11% Similarity=0.097 Sum_probs=59.4
Q ss_pred HHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005481 425 LSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGD 501 (694)
Q Consensus 425 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~ 501 (694)
...+...|++++|+++|+++++ +.|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444556677777777776665 2333 445556666666666666666666665 3333 34455556666666666
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHH
Q 005481 502 LELGREVGEILLRLDGDNPVNYVMM 526 (694)
Q Consensus 502 ~~~a~~~~~~~~~~~p~~~~~~~~l 526 (694)
+++|+..++++++++|+++.....+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6666666666666666665554444
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.0034 Score=70.30 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 005481 214 EFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYA 293 (694)
Q Consensus 214 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 293 (694)
...+..+..+|.+.|+.+++..+++.+++..+ .++.+.|.+...|... ++++|..++.+.. ..|.
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~---~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i 180 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADR---DNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFI 180 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHH
Confidence 34555666666677777777777777777664 6778888888888888 8888887776543 3366
Q ss_pred hCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhc-CCCCCchHHHHHhhhhhhcCCHHHHH
Q 005481 294 QEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKV-PSGLDTSVSNSIVDMYLKCGLIDEAT 372 (694)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~ 372 (694)
..+++.++.+++.++... .|+.+.+. .++.+.+... |..--+.++-.|-..|-+.++++++.
T Consensus 181 ~~kq~~~~~e~W~k~~~~--~~~d~d~f---------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHY--NSDDFDFF---------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred hhhcchHHHHHHHHHHhc--CcccchHH---------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 677888888888888774 34433221 1222222221 22233344455666777777788888
Q ss_pred HHHccCCC---CChhhHHHHHHHHH
Q 005481 373 ELFNEMPV---KNVVTWTVIITGYG 394 (694)
Q Consensus 373 ~~~~~~~~---~~~~~~~~li~~~~ 394 (694)
.+|+.+.+ .|.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 88877763 34455555666654
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.00048 Score=58.32 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=66.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005481 421 YLAVLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS----IAIWQTLLS 494 (694)
Q Consensus 421 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 494 (694)
+..+...+...|++++|.+.|..+.+...-.| ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555666666666666666655221111 1234555667777777777777777765 22233 456777777
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCcchH
Q 005481 495 ACRVHGDLELGREVGEILLRLDGDNPVNY 523 (694)
Q Consensus 495 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 523 (694)
++...|+.+.|...++++++..|+++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 88888899999999999998888865543
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.3e-05 Score=46.86 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhhhCCC
Q 005481 79 VSWTALMCGFLQNGNAKACLSLFCQMGSSSV 109 (694)
Q Consensus 79 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 109 (694)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.002 Score=56.85 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCCh--hHHHH
Q 005481 386 WTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG----VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRI--EHYSC 459 (694)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 459 (694)
|..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+.... -.|+. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 44455555 3777888888888888753 333 233445566778888888888888887732 22221 23445
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005481 460 IVDSLGRAGRLDEAKNLIESMPVK-PSIAIWQTLLSACRVHGDLELGREVGEILL 513 (694)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 513 (694)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677888888899988888776322 234456667778888899999998888763
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5.3e-05 Score=46.45 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005481 384 VTWTVIITGYGKHGLAKEAVGLFRKMLLDDV 414 (694)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 414 (694)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999988764
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.00042 Score=62.96 Aligned_cols=93 Identities=16% Similarity=-0.043 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHh
Q 005481 454 IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS----IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSN 528 (694)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 528 (694)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455677777788888888888888876 23332 3478888899999999999999999999999998888888888
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 005481 529 IHA-------DAGSWNECERLRKLA 546 (694)
Q Consensus 529 ~~~-------~~g~~~~a~~~~~~m 546 (694)
+|. ..|++++|...++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666554
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0014 Score=64.78 Aligned_cols=263 Identities=11% Similarity=0.022 Sum_probs=164.5
Q ss_pred HHHHHcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccC-ccchHHHHHHHhhhccHH
Q 005481 259 DFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVD-GFVLSSMMGVFADFALVE 334 (694)
Q Consensus 259 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~ 334 (694)
..+.+...+.+|++.+....+ .+..-|..-...+..-|++++|+--.+.-.+ ++|. ..+....-..+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 455666677777776665432 3445566666666667777776655544333 2222 123333334444444444
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC-----CCChhhHHHH-HHHHHhcCCHHHHHHHHHH
Q 005481 335 QGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP-----VKNVVTWTVI-ITGYGKHGLAKEAVGLFRK 408 (694)
Q Consensus 335 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 408 (694)
.|.+.+. +...+ ....|...++... +|-..+|-.+ ..++...|++++|...-..
T Consensus 135 ~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 4444433 10000 1112222222222 1233444443 3456678899998888777
Q ss_pred HHHCCCCCCHHHHHHHH--HHHHccCcHHHHHHHHHHHhhccCCCCChhHH-------------HHHHHHHHhcCChHHH
Q 005481 409 MLLDDVEPDGVAYLAVL--SACSHSGLVEESQEYFSRLCNDKRMKPRIEHY-------------SCIVDSLGRAGRLDEA 473 (694)
Q Consensus 409 m~~~g~~pd~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-------------~~li~~~~~~g~~~~A 473 (694)
.++. .+.. .+..++ .++-..++.+.|...|++..+ +.|+...- ..=.+...+.|++.+|
T Consensus 195 ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 7663 2222 122222 234566788999999998866 55653321 2223556789999999
Q ss_pred HHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 474 KNLIESM-PVKP-----SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 474 ~~~~~~~-~~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++...++|++|.+-++...
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 4444 455566666677889999999999999999999988999999999999999999999999887
Q ss_pred hC
Q 005481 548 SK 549 (694)
Q Consensus 548 ~~ 549 (694)
+.
T Consensus 349 q~ 350 (486)
T KOG0550|consen 349 QL 350 (486)
T ss_pred hh
Confidence 64
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0037 Score=57.82 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=137.0
Q ss_pred cCCHHHHHHHHccCC--------CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCcH
Q 005481 365 CGLIDEATELFNEMP--------VKNVV-TWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAV-LSACSHSGLV 434 (694)
Q Consensus 365 ~g~~~~A~~~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~ 434 (694)
..+.++..+++..+. .++.. .+..++-+....|+.+.|...++++...- |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 457888888887775 12222 33444555667899999999999988753 555322222 1124567999
Q ss_pred HHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005481 435 EESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGREVGEIL 512 (694)
Q Consensus 435 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 512 (694)
++|.++++.+.++. +.|..++--=+-++-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998843 345666766677777888888888887776 56678999999999999999999999999999
Q ss_pred HcCCCCCcchHHHHHhHHHhcC---CchHHHHHHHHHHhCC
Q 005481 513 LRLDGDNPVNYVMMSNIHADAG---SWNECERLRKLARSKG 550 (694)
Q Consensus 513 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 550 (694)
+=..|.++..+..+++++...| +.+-+++++....+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999887766 4556777777776643
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.00057 Score=62.35 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhH
Q 005481 455 EHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS----IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNI 529 (694)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 529 (694)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666666677777777776665 22222 35677777888888888999998999888888888888888888
Q ss_pred HHhcCC
Q 005481 530 HADAGS 535 (694)
Q Consensus 530 ~~~~g~ 535 (694)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0058 Score=56.59 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=122.8
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMPVK-----NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSAC 428 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 428 (694)
++..++-+..-+|+.+.|...++.+... -+.-..+ .-+-..|++++|+++++.+++.. +-|.+++--=+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 4555666677789999999999887632 2222222 23455799999999999999865 34556776666666
Q ss_pred HccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChH
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVH---GDLE 503 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~---g~~~ 503 (694)
-..|+--+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -+.|- +..+..+...+... .+.+
T Consensus 131 ka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 6678777888888777764 4678999999999999999999999999998 34554 44455666654444 3788
Q ss_pred HHHHHHHHHHcCCCCCcchHH
Q 005481 504 LGREVGEILLRLDGDNPVNYV 524 (694)
Q Consensus 504 ~a~~~~~~~~~~~p~~~~~~~ 524 (694)
.|...|.+++++.|.+...+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHH
Confidence 999999999999996544433
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00016 Score=53.62 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 492 LLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888888888888888888888887653
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.00075 Score=69.24 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=83.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHh
Q 005481 389 IITGYGKHGLAKEAVGLFRKMLLDDVEPD-GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGR 466 (694)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 466 (694)
....+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++.+++ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355667889999999999999984 454 46788888899999999999999999987 456 46688899999999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005481 467 AGRLDEAKNLIESM-PVKPSIAIWQTLLSAC 496 (694)
Q Consensus 467 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a~ 496 (694)
.|++++|+..|++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5666655544444433
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.61 E-value=0.18 Score=55.42 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc--CCCCCcchHHHHHhH
Q 005481 457 YSCIVDSLGRAGRLD---EAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLR--LDGDNPVNYVMMSNI 529 (694)
Q Consensus 457 ~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~ 529 (694)
.+.|++++-+.++.. +|+-+++.- ...| |..+--.|+..|.--|-+..|...|+.+-- +.-| .-.| .+...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D-Tlgh-~~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD-TLGH-LIFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc-cchH-HHHHH
Confidence 456667777777655 333333332 2223 233334456666666777777777765532 2222 2222 23345
Q ss_pred HHhcCCchHHHHHHHHHH
Q 005481 530 HADAGSWNECERLRKLAR 547 (694)
Q Consensus 530 ~~~~g~~~~a~~~~~~m~ 547 (694)
+...|+|..+...+....
T Consensus 517 ~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHhcccchhHHHHHHHHH
Confidence 566777777777766543
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0018 Score=59.04 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHH
Q 005481 382 NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD--GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYS 458 (694)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 458 (694)
....+..+...+...|++++|+..|++.......|. ...+..+...+.+.|++++|...++++.+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566677777777888888888887776433332 24666677777777888888887777766 3343 44555
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCC
Q 005481 459 CIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGS 535 (694)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 535 (694)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666655544332221 112678889999999999976 5555555555554
No 164
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.013 Score=54.80 Aligned_cols=184 Identities=16% Similarity=0.082 Sum_probs=124.1
Q ss_pred hhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 005481 360 DMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAV-GLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQ 438 (694)
Q Consensus 360 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 438 (694)
..|...|.......-...-..+.......+...+..-++-++-+ ++.+.+.......|.+....-...|.+.|++++|.
T Consensus 49 raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl 128 (299)
T KOG3081|consen 49 RAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEAL 128 (299)
T ss_pred HHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHH
Confidence 34444554433322222222333344443444444445544443 34455555555555454555556789999999999
Q ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHc
Q 005481 439 EYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVH----GDLELGREVGEILLR 514 (694)
Q Consensus 439 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~----g~~~~a~~~~~~~~~ 514 (694)
+..... -+.+....=+..+.|..+++-|.+.+++|..-.+..+.+.|..++.+. +.+..|.-+|+++-+
T Consensus 129 ~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~ 201 (299)
T KOG3081|consen 129 KALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE 201 (299)
T ss_pred HHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc
Confidence 887652 344555556777889999999999999995444667777777776432 468889999999998
Q ss_pred CCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 515 LDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 515 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
.-|..+....-.+.++...|+|++|..+.+...++.
T Consensus 202 k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 202 KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 666668888888899999999999999999998754
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=97.54 E-value=0.0019 Score=56.30 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=76.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCc
Q 005481 459 CIVDSLGRAGRLDEAKNLIESM-PVK-PSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSW 536 (694)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 536 (694)
....-+...|++++|..+|+-+ -.. -+..-|..|...|...++++.|...|..+..++++||.++...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444556789999999998876 122 24556888888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 005481 537 NECERLRKLARS 548 (694)
Q Consensus 537 ~~a~~~~~~m~~ 548 (694)
+.|+..++...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.48 E-value=0.0013 Score=52.43 Aligned_cols=61 Identities=25% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 005481 457 YSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDG 517 (694)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 517 (694)
+..+...+...|++++|.+.++.. ...| +..+|..+...+...|+++.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 333444444444444444444443 1112 223455555556666666666666666665555
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00037 Score=51.64 Aligned_cols=61 Identities=28% Similarity=0.323 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 460 IVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
+...+.+.|++++|++.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 44554 66788888899999999999999999999999864
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.47 E-value=0.01 Score=52.21 Aligned_cols=133 Identities=10% Similarity=0.077 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHH
Q 005481 414 VEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS---IAIW 489 (694)
Q Consensus 414 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~ 489 (694)
..|....-..|..+....|+..+|...|++... .-+.-|....-.+.++....+++.+|...+++. ...|+ +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 456666667778888888888888888888876 334556667777778888888888888888876 22222 2234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 490 QTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 490 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
-.+...+...|.++.|+..++.++..-|+ +..-...+..++++|+.+++..-...+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45567788899999999999999999887 67777788899999999888776655544
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.00093 Score=63.48 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=78.1
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchH
Q 005481 461 VDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNE 538 (694)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 538 (694)
.+-+.+.+++++|+..|.++ .+.|. ++.|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999987 66665 56677777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005481 539 CERLRKLARS 548 (694)
Q Consensus 539 a~~~~~~m~~ 548 (694)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999987765
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.41 E-value=0.19 Score=50.93 Aligned_cols=446 Identities=11% Similarity=0.089 Sum_probs=235.9
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCC------hhhHHHHHHHHHhcCChHHHHHHHhccCCCC-cccHHHHHHHH--HhCCC
Q 005481 23 SKNLLLDYGVQLHGALVKMGFSFD------LMLNNDLIDMYAKCGEMNGACAVFDKMLERN-VVSWTALMCGF--LQNGN 93 (694)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~ 93 (694)
-+.+++.++..+|..+.+.- ..+ ....+.++++|.- .+++..........+.. ...|-.+..++ -+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 36788999999999998764 222 2345678888873 45555555554443321 33466665544 46889
Q ss_pred hHHHHHHHHHhhhC--CCCC---C---------ceeHHHHHHHhcccCChHHHHHHHHHHHHhCCC----CChhHHHHHH
Q 005481 94 AKACLSLFCQMGSS--SVKP---N---------EFTLSTNIKASGVLSSVENGMQIHGMCMKSGFE----WNPVVGNSII 155 (694)
Q Consensus 94 ~~~A~~~~~~m~~~--g~~p---~---------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ll 155 (694)
+.+|++.+...... +..| | -.-=+..+.++...|.+.+|+.++.+++..=++ .+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999998877654 2222 1 111234456677889999999998888776444 7888999988
Q ss_pred HHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHccc--CCchHH
Q 005481 156 DMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSL--GSVGGG 233 (694)
Q Consensus 156 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a 233 (694)
-++++.=-++ +-+.+...=..-|--||-.|.+.=+.-++ -.=..+.|...-+..++....-. ..+.--
T Consensus 175 lmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 175 LMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 8887652221 11122222223455666666543211111 00011233333333333332221 222333
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcC--------CCChhhHHHHHHHHHhCCCHHHHHHHH
Q 005481 234 TQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIE--------QKSVISWSSLILGYAQEENLAEAMELF 305 (694)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (694)
.+++......-+.| ....+...|+.-..+ +.+++..+.+.+. ++=+.++..++....+.++..+|-+.+
T Consensus 245 mq~l~~We~~yv~p-~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 245 MQILENWENFYVHP-NYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHhhccCC-chhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444443332 223334445544444 3444444433322 223457888888888999998888887
Q ss_pred HHHHhcCCccCccchHH-------HHHHHh-h---hccHHHHHHHHHHHHhcCCCCCchHHHHHh---hhhhhcCC-HHH
Q 005481 306 RQLRERSLQVDGFVLSS-------MMGVFA-D---FALVEQGKQIHAYAAKVPSGLDTSVSNSIV---DMYLKCGL-IDE 370 (694)
Q Consensus 306 ~~m~~~g~~pd~~t~~~-------ll~~~~-~---~~~~~~a~~i~~~~~~~~~~~~~~~~~~li---~~y~~~g~-~~~ 370 (694)
.-+.. +.|+...-.- +-+..+ . ..++..-..++..+....+.... ...-|+ .-|-+.|. -++
T Consensus 322 ~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHH
Confidence 76654 2444321111 111111 1 11122222333333333322111 111111 22334444 677
Q ss_pred HHHHHccCC---CCChhhHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHH----HHHHH--HHHccCcH
Q 005481 371 ATELFNEMP---VKNVVTWTVII----TGYGKH---GLAKEAVGLFRKMLLDDVEPDGVAY----LAVLS--ACSHSGLV 434 (694)
Q Consensus 371 A~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~pd~~t~----~~ll~--a~~~~g~~ 434 (694)
|.++++.+. .-|...-|... .+|.+. ....+-+.+-+-..+.|+.|-.+.= +.|.+ -+...|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 777777665 23444333322 122221 2233344444445566777644332 22222 23456788
Q ss_pred HHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005481 435 EESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQT 491 (694)
Q Consensus 435 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 491 (694)
.++.-+-..+.+ +.|++.+|..++-.+....+++||.+++.+.| |+..+|++
T Consensus 479 ~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 479 HKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 887776666655 77888888888888888888888888888864 46666654
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.00053 Score=52.16 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=50.6
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 494 SACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 494 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
..+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999999999999999999999999999887643
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.36 E-value=0.0097 Score=53.96 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHH
Q 005481 383 VVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD--GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSC 459 (694)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 459 (694)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|...++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44567777777788888888888888876432222 24677777778888888888888888766 2343 344555
Q ss_pred HHHHHH
Q 005481 460 IVDSLG 465 (694)
Q Consensus 460 li~~~~ 465 (694)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.33 E-value=0.39 Score=52.86 Aligned_cols=217 Identities=13% Similarity=0.070 Sum_probs=144.6
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhhHHHHHHH--HHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHH
Q 005481 24 KNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDM--YAKCGEMNGACAVFDKMLE---RNVVSWTALMCGFLQNGNAKACL 98 (694)
Q Consensus 24 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 98 (694)
..+++..|.+..+.+.+.- |+. .|...+.+ ..+.|+.++|..+++.... .|..|...+-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 4567777887777776642 332 23333333 3578999999988888733 36778888999999999999999
Q ss_pred HHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHH
Q 005481 99 SLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGR----------INEAA 168 (694)
Q Consensus 99 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~----------~~~A~ 168 (694)
.+|+.... .-|+......+..++.+.+++.+-.++--++.+. ++-.++.+-+.++.+...-. ..-|.
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999876 4677778888888999888877766655555553 45556666666666654321 23456
Q ss_pred HHHccCCCCC-c-cc---HHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHH
Q 005481 169 RMFDVMPAKS-L-IT---WNAMIAGYVLAGYSDKGLLLFR-KMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLIT 242 (694)
Q Consensus 169 ~~f~~~~~~~-~-~~---~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 242 (694)
+.++.+.+.+ . .+ .-.-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-..++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6666665443 1 11 1111233456788999999884 343333333444445566677788888888888888888
Q ss_pred hCCC
Q 005481 243 SGFP 246 (694)
Q Consensus 243 ~g~~ 246 (694)
.|.+
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 8864
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.31 E-value=0.0081 Score=64.49 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CcHHHHHHHHHHHhhccCCCCCh-hHHHHHHHHHHhc--------CChHHHHHHHH
Q 005481 413 DVEPDGVAYLAVLSACSHS-----GLVEESQEYFSRLCNDKRMKPRI-EHYSCIVDSLGRA--------GRLDEAKNLIE 478 (694)
Q Consensus 413 g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~ 478 (694)
+.+.|...|..++.+.... +..+.|..+|+++.+ +.|+- ..|..+..+|... ++++.+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778888888876543 347799999999988 67873 3444444333221 22345555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 479 SM---P-VKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 479 ~~---~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
+. + ...+..++..+.-.....|++++|...++++++++|+ ..+|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 53 1 3335567887777777789999999999999999995 7899999999999999999999999887654
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.31 E-value=0.00012 Score=45.67 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=30.9
Q ss_pred HHHHHcCCCCCcchHHHHHhHHHhcCCchHHHH
Q 005481 509 GEILLRLDGDNPVNYVMMSNIHADAGSWNECER 541 (694)
Q Consensus 509 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 541 (694)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00076 Score=64.47 Aligned_cols=101 Identities=14% Similarity=0.047 Sum_probs=82.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHcCCCCCcchHHHH
Q 005481 452 PRIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVH---GDLELGREVGEILLRLDGDNPVNYVMM 526 (694)
Q Consensus 452 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~l 526 (694)
-|.+.|--|...|.+.|+++.|..-|.+. .+.| +...+..+..++... ....++..+++++++++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 35778888888899999999888888877 3433 466666666664333 356789999999999999999999999
Q ss_pred HhHHHhcCCchHHHHHHHHHHhCCCc
Q 005481 527 SNIHADAGSWNECERLRKLARSKGLK 552 (694)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~m~~~g~~ 552 (694)
+-.+...|++.+|...++.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986543
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.30 E-value=0.25 Score=50.04 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=59.0
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHH
Q 005481 473 AKNLIESMPVKP----SIAIWQTLLSA--CRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLA 546 (694)
Q Consensus 473 A~~~~~~~~~~p----~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 546 (694)
-+.++++.++.| +...-|.|..| +..+|++.++.-...-+.+..| ++.+|..++-.+....+++||-.++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344556666555 34456677666 5788999999999999999999 6999999999999999999999999865
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.00069 Score=53.23 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005481 396 HGLAKEAVGLFRKMLLDDV-EPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEA 473 (694)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 473 (694)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..|. ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666666332 11333344456666666666666666655 22 1222 22333345556666666666
Q ss_pred HHHHHh
Q 005481 474 KNLIES 479 (694)
Q Consensus 474 ~~~~~~ 479 (694)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.00033 Score=52.42 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=41.1
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 497 RVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 497 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888876654
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.21 E-value=0.011 Score=58.39 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHH
Q 005481 384 VTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSA-CSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVD 462 (694)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 462 (694)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367788888888888999999999998543 2223344443333 333567777999999998854 456778889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 463 SLGRAGRLDEAKNLIESM-PVKPSI----AIWQTLLSACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
.+.+.|+.+.|..+|++. ..-|.. .+|...+.-=.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 323333 4899999999999999999999999999888743
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.00052 Score=51.35 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=23.0
Q ss_pred ccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005481 430 HSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 430 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 480 (694)
..|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555441 23 3334444555555555555555555544
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.15 E-value=0.0021 Score=63.27 Aligned_cols=128 Identities=9% Similarity=-0.011 Sum_probs=90.1
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHH---hhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCHH
Q 005481 420 AYLAVLSACSHSGLVEESQEYFSRL---CNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-------PVK-PSIA 487 (694)
Q Consensus 420 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~~ 487 (694)
.|..|.+.|.-.|++++|+..++.- .+.+|-+. ....+..|.+.+.-.|+++.|.+.++.. +.+ ...-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4666666666778899998777643 22344332 2456888889999999999999888764 111 1234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcC----C--CCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 488 IWQTLLSACRVHGDLELGREVGEILLRL----D--GDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 488 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
+.-+|.++|....+++.|+....+-+.+ + .....++..|+++|...|..+.|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5667888888888889998887765543 2 2335688899999999999999888766554
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.011 Score=52.02 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=92.6
Q ss_pred HhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC--
Q 005481 444 LCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM---PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGD-- 518 (694)
Q Consensus 444 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~-- 518 (694)
..++..+.|++..--.|...+.+.|+..||...|++. .+..|....-.+.++...-++...|...++.+.+..|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3333456799998889999999999999999999987 45668888888999999999999999999999999884
Q ss_pred CcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 519 NPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.|.....++..|...|+.++|..-++...+.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5778888999999999999999999988764
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.13 E-value=0.00093 Score=50.14 Aligned_cols=64 Identities=25% Similarity=0.212 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHcCCC
Q 005481 454 IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHG-DLELGREVGEILLRLDG 517 (694)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 517 (694)
...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666777777777777777777765 34444 556788888888888 68899999999888887
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.6 Score=50.44 Aligned_cols=342 Identities=13% Similarity=0.066 Sum_probs=186.8
Q ss_pred hCCCCCCceeHHH-----HHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHccCCC-
Q 005481 106 SSSVKPNEFTLST-----NIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCG---RINEAARMFDVMPA- 176 (694)
Q Consensus 106 ~~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g---~~~~A~~~f~~~~~- 176 (694)
.-|++.+..-|.. +|.-+...+.+..|.++-..+...-... ..++.....-+.+.. +-+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3455555444443 4455566677777777766653221111 466666666666653 23334444455555
Q ss_pred -CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcch
Q 005481 177 -KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHG----EIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKT 251 (694)
Q Consensus 177 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 251 (694)
..-++|..+.+--.+.|+.+-|..+++.=...+ +..+..-+...+.-+...|+.+...+++-++.+.-. .
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~-----~ 578 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN-----R 578 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH-----H
Confidence 456788888888888899998888776432221 112223345556666677777776666665544311 0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhCCCHHHHHHHHH--HHHh-cCCccCccchHHHHHHH
Q 005481 252 VIAGSLVDFYVKCGCLVEARRVFDLIEQ-KSVISWSSLILGYAQEENLAEAMELFR--QLRE-RSLQVDGFVLSSMMGVF 327 (694)
Q Consensus 252 ~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~-~g~~pd~~t~~~ll~~~ 327 (694)
..+ .....+...|..+|....+ .|..+ + ..+.+.++-.+++.-|. .... .-+.+-.......-.+|
T Consensus 579 s~l------~~~l~~~p~a~~lY~~~~r~~~~~~---l-~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 579 SSL------FMTLRNQPLALSLYRQFMRHQDRAT---L-YDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred HHH------HHHHHhchhhhHHHHHHHHhhchhh---h-hhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 000 0111223334444443322 11111 1 11112222222222221 1000 00122222333444455
Q ss_pred hhhccHHHHHHHHH----------HH-HhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhc
Q 005481 328 ADFALVEQGKQIHA----------YA-AKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKH 396 (694)
Q Consensus 328 ~~~~~~~~a~~i~~----------~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 396 (694)
++........+..+ .+ .+.|......+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 54443222111111 11 12232333333444455666788999999999998888888888888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005481 397 GLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNL 476 (694)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 476 (694)
+++++-+++-+.+.. ++-|.-...+|.+.|+.++|.+++.+... . .-.+.+|.+.|++.+|.++
T Consensus 729 ~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHH
Confidence 998887776665442 45566678889999999999988865522 1 1568889999999988876
Q ss_pred HHh
Q 005481 477 IES 479 (694)
Q Consensus 477 ~~~ 479 (694)
--+
T Consensus 793 A~~ 795 (829)
T KOG2280|consen 793 AAE 795 (829)
T ss_pred HHH
Confidence 544
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.012 Score=51.06 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHH
Q 005481 388 VIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLG 465 (694)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 465 (694)
++..-+.+.|++++|..+|+-+.. +.|.. .-|..|..+|...|++++|+..|..+.. +.|| ...+-.+...|.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHH
Confidence 344444455555555555555544 33333 2344444444445555555555555543 2222 333333444444
Q ss_pred hcCChHHHHHHHH
Q 005481 466 RAGRLDEAKNLIE 478 (694)
Q Consensus 466 ~~g~~~~A~~~~~ 478 (694)
..|+.++|.+-|+
T Consensus 115 ~lG~~~~A~~aF~ 127 (157)
T PRK15363 115 ACDNVCYAIKALK 127 (157)
T ss_pred HcCCHHHHHHHHH
Confidence 4444444444443
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.04 Score=54.72 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 389 IITGYGKH-GLAKEAVGLFRKMLL----DDVEPDG--VAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 389 li~~~~~~-g~~~~A~~~~~~m~~----~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
+...|... |++++|++.|++..+ .| .|.. ..+..+...+...|++++|.++|++...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555 566666666555443 12 1111 2344444455555566666665555544
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.00 E-value=0.44 Score=47.37 Aligned_cols=243 Identities=15% Similarity=0.135 Sum_probs=155.7
Q ss_pred hCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHH
Q 005481 294 QEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATE 373 (694)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 373 (694)
-.|++++|.+-|+.|... ...-..-+..+.-..-+.|+.+.+++.-+..-..-.. -.....+++...+..|+++.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 357777777777777652 0000111222222334567777777766655443222 34566788888899999999999
Q ss_pred HHccCC-----CCChh--hHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHH
Q 005481 374 LFNEMP-----VKNVV--TWTVIITGYG---KHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFS 442 (694)
Q Consensus 374 ~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 442 (694)
+.+.-. ++++. .-..|+.+-+ -.-+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 887654 44443 2222333222 13446666666655555 677774 34445667899999999999999
Q ss_pred HHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 005481 443 RLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM----PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDG 517 (694)
Q Consensus 443 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 517 (694)
.+-+ ..|....+.. ..+.|.|+. +++-++.. ..+|| ..+-.++..+-...|++..|..-.+.+....|
T Consensus 288 ~aWK---~ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAWK---AEPHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHh---cCCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 9966 4676655433 234455542 33333222 34555 55566677788889999999999999999999
Q ss_pred CCcchHHHHHhHHHhc-CCchHHHHHHHHHHh
Q 005481 518 DNPVNYVMMSNIHADA-GSWNECERLRKLARS 548 (694)
Q Consensus 518 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 548 (694)
. .+.|.+|+++-... |+-.++...+.+..+
T Consensus 361 r-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 361 R-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred h-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 8 57899999987655 998888887776654
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.99 E-value=0.0027 Score=64.66 Aligned_cols=63 Identities=14% Similarity=-0.040 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcch---HHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 486 IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVN---YVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 486 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
...|+.+..+|...|++++|...++++++++|++..+ |.+++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544422 44555555555555555555544443
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.95 E-value=0.098 Score=52.88 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=104.6
Q ss_pred HHhhhhhhcCCHHHHHHHHccCCCC---Ch----hhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005481 357 SIVDMYLKCGLIDEATELFNEMPVK---NV----VTWTVIITGYGK---HGLAKEAVGLFRKMLLDDVEPDGVAYLAVLS 426 (694)
Q Consensus 357 ~li~~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 426 (694)
.|+-.|-...+++...++.+.+... ++ ..-...+-++.+ .|+.++|+.++..++...-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777788887877777632 11 112223445556 7889999999998776667788888877776
Q ss_pred HHHc---------cCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChH----HHHHHH---HhC-------CCC
Q 005481 427 ACSH---------SGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLD----EAKNLI---ESM-------PVK 483 (694)
Q Consensus 427 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~~-------~~~ 483 (694)
.|-. ....++|...|.+.-+ +.|+..+--.++.++...|... +..++- ... .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 2347788888887744 6677655444455555555422 222222 111 122
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 484 PSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 484 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
.|-..+.+++.++.-.|+.+.|.+++++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 345556889999999999999999999999998764
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.94 E-value=0.01 Score=49.65 Aligned_cols=86 Identities=20% Similarity=0.040 Sum_probs=54.1
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC---CcchHHHHHhHHHh
Q 005481 461 VDSLGRAGRLDEAKNLIESM---PVKPS--IAIWQTLLSACRVHGDLELGREVGEILLRLDGD---NPVNYVMMSNIHAD 532 (694)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 532 (694)
..++-..|+.++|+.+|++. +..+. ...+-.+.++++..|++++|..++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666654 21211 234555666777777777777777777776666 45555666677777
Q ss_pred cCCchHHHHHHHHH
Q 005481 533 AGSWNECERLRKLA 546 (694)
Q Consensus 533 ~g~~~~a~~~~~~m 546 (694)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 78877777766543
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.91 E-value=0.0057 Score=59.39 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC---cchHHHHHh
Q 005481 457 YSCIVDSLGRAGRLDEAKNLIESM-PVKPS----IAIWQTLLSACRVHGDLELGREVGEILLRLDGDN---PVNYVMMSN 528 (694)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 528 (694)
|..-+..+.+.|++++|...|+.+ ...|+ ...+--+..++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555555444 11222 1234445555666666666666666666655543 344445566
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 005481 529 IHADAGSWNECERLRKLARS 548 (694)
Q Consensus 529 ~~~~~g~~~~a~~~~~~m~~ 548 (694)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.91 E-value=0.4 Score=47.59 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHcccCCchHHHHHHHHHHHh--CCCCCcchhh
Q 005481 182 WNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPD-----EF-TFTSTLKACGSLGSVGGGTQIHGFLITS--GFPYSVKTVI 253 (694)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~ 253 (694)
+..+...+.+.|++++|.++|++....-...+ .. .|...+-.+...|+...|...++..... ++..+....+
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34455666667777777777766654322211 11 1112222333445555555555555433 2222233344
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHhhcCCCC
Q 005481 254 AGSLVDFYVK--CGCLVEARRVFDLIEQKS 281 (694)
Q Consensus 254 ~~~li~~y~~--~g~~~~A~~~f~~~~~~~ 281 (694)
...|+.+|-. ...+++|..-|+.+.+-|
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 4555555543 234566666666665544
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.90 E-value=0.015 Score=46.93 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------cHHHHHHHHHHHhhccCCCCChhH
Q 005481 386 WTVIITGYGKHGLAKEAVGLFRKMLLDDV-EPDGVAYLAVLSACSHSG--------LVEESQEYFSRLCNDKRMKPRIEH 456 (694)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 456 (694)
-...|..+...+++.....+|+.+.+.|+ .|...+|+.++.+..+.. .+-+.+.+|+.|.. .+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666677999999999999999999 899999999999876542 34566778888887 678888888
Q ss_pred HHHHHHHHHh
Q 005481 457 YSCIVDSLGR 466 (694)
Q Consensus 457 ~~~li~~~~~ 466 (694)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.0093 Score=54.35 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=74.7
Q ss_pred HHHHccC--CCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 005481 372 TELFNEM--PVKNVVTWTVIITGYGKH-----GLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHS------------- 431 (694)
Q Consensus 372 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 431 (694)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 356777888888887654 66777778888999999999999999999876542
Q ss_pred ---CcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCC
Q 005481 432 ---GLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGR 469 (694)
Q Consensus 432 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 469 (694)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234567888888877 8888888888888888887775
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.87 E-value=0.0081 Score=48.36 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCC-CCCceeHHHHHHHhcccC--------ChHHHHHHHHHHHHhCCCCChhHH
Q 005481 81 WTALMCGFLQNGNAKACLSLFCQMGSSSV-KPNEFTLSTNIKASGVLS--------SVENGMQIHGMCMKSGFEWNPVVG 151 (694)
Q Consensus 81 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 151 (694)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 44556667777999999999999999999 999999999999887653 234566789999999999999999
Q ss_pred HHHHHHHHh
Q 005481 152 NSIIDMYSK 160 (694)
Q Consensus 152 ~~ll~~y~~ 160 (694)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.83 E-value=0.012 Score=60.61 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=77.6
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhccCC-CC-----cccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHH
Q 005481 44 SFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE-RN-----VVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLS 117 (694)
Q Consensus 44 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 117 (694)
+.+......+++......+++++..++-+... |+ ..|.+++|+.|...|..+++++++..=...|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34444555566666666666667666655532 21 2345677777777777777777777777777777777777
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005481 118 TNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKC 161 (694)
Q Consensus 118 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~ 161 (694)
.+++.+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777666555555555444444444
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.81 E-value=0.0018 Score=43.32 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHh
Q 005481 487 AIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSN 528 (694)
Q Consensus 487 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 528 (694)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888899999999999999999999999999988887754
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.80 E-value=0.013 Score=57.86 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005481 419 VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGR-AGRLDEAKNLIESM--PVKPSIAIWQTLLSA 495 (694)
Q Consensus 419 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a 495 (694)
.+|..++..+.+.+..+.|+.+|.++.+.... +...|-....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999863333 34456555555444 46666699999987 445577889999999
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCCc---chHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 496 CRVHGDLELGREVGEILLRLDGDNP---VNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 496 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+...|+.+.|..+|++++..-|.+. ..|...++.=.+.|+++.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 47777888888999999999999888763
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.77 E-value=0.022 Score=58.71 Aligned_cols=122 Identities=9% Similarity=-0.028 Sum_probs=84.7
Q ss_pred CCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC----CChhh
Q 005481 209 GEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ----KSVIS 284 (694)
Q Consensus 209 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~ 284 (694)
+.+.+...+..+++.+....+++.+..++-...........-..+..++|..|.+.|..+++..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777788888777788777777766655322113344556777777777777777777765443 57777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhh
Q 005481 285 WSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADF 330 (694)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 330 (694)
+|.||..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777777666777777666666554
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=1.1 Score=48.02 Aligned_cols=144 Identities=16% Similarity=0.135 Sum_probs=69.8
Q ss_pred hhhhhhcCCHHHHHHHHccCCCCCh---hhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005481 359 VDMYLKCGLIDEATELFNEMPVKNV---VTWTVIITGY----GKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHS 431 (694)
Q Consensus 359 i~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 431 (694)
|.++.+.|+.-+|.+++.+|.++.. +.+..+-..| .-..+..++++-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 5567777777777777777753211 1111111111 111233445555555555554433322 1223
Q ss_pred CcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005481 432 GLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM----PVKPSIAIWQTLLSACRVHGDLELGRE 507 (694)
Q Consensus 432 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~a~~~~g~~~~a~~ 507 (694)
|...++-++.+..-+ -....||-.|..-...-|+.+.|++.--.+ .+-|-..+|+.|.-+-+..+.+...-+
T Consensus 1003 ~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 333444444443322 123456666666677788888888764433 244556666655544344444444444
Q ss_pred HHHHHH
Q 005481 508 VGEILL 513 (694)
Q Consensus 508 ~~~~~~ 513 (694)
++-++-
T Consensus 1079 AfmkLe 1084 (1189)
T KOG2041|consen 1079 AFMKLE 1084 (1189)
T ss_pred HHHHHH
Confidence 444443
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.74 E-value=0.034 Score=50.81 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=68.1
Q ss_pred hccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005481 330 FALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKM 409 (694)
Q Consensus 330 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (694)
.|.++-....+..|.+.|+.-|..+|+.|++.+=| |.+- -..+|+ ++.. -...+.+-|++++++|
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~~F~--hyp~Qq~c~i~lL~qM 129 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------AEFM--HYPRQQECAIDLLEQM 129 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------HHhc--cCcHHHHHHHHHHHHH
Confidence 35566666667778888888888888888887765 3221 111111 1111 1134567799999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHHhh
Q 005481 410 LLDDVEPDGVAYLAVLSACSHSGL-VEESQEYFSRLCN 446 (694)
Q Consensus 410 ~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~ 446 (694)
...|+.||..|+..|++.+.+.+. +...+++.-.|.+
T Consensus 130 E~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 130 ENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999999999999999977654 2334444444444
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.74 E-value=0.1 Score=50.33 Aligned_cols=55 Identities=15% Similarity=0.040 Sum_probs=45.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCC---cchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGDN---PVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
..-|.+.|.+.-|..-++.+++.-|+. +.+...+.++|...|..++|..+.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345778899999999999999888764 4677788999999999999999887654
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.23 Score=52.35 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=98.5
Q ss_pred HHHHHHHhcccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcC
Q 005481 116 LSTNIKASGVLSSVENGMQI--HGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAG 193 (694)
Q Consensus 116 ~~~ll~a~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 193 (694)
++..-++|.+.+++.--+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|. ++|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcC
Confidence 44444555555555443333 456667776677654 3345666788999998874 456
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 005481 194 YSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRV 273 (694)
Q Consensus 194 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (694)
....|+++|.+|+--+ ...-+...|..++-+.+.+.-.+.. .+..--.+-..++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~WA----r~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADWA----RNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred chhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHHh----hhcCCcHHHHHHhhcccchhhhhhh
Confidence 6677777777664311 1122223333333333322211110 0000012233444555555555443
Q ss_pred HhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCch
Q 005481 274 FDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTS 353 (694)
Q Consensus 274 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 353 (694)
. ..+|-.+-+.++-+++-. .+..+...+...+-....+..|-+||..+-..
T Consensus 726 ~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 726 C------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred h------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 2 122222223333222211 12223333333334444555566666554321
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCCC
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMPV 380 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~~ 380 (694)
.+++++....+++++|..+-++.++
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCcc
Confidence 2577788888888888888888774
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.07 Score=49.84 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC--CCh--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHH
Q 005481 254 AGSLVDFYVKCGCLVEARRVFDLIEQ--KSV--------ISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSM 323 (694)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 323 (694)
+++|+..|.-...+++-.+.|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++++..+...+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 56666666666566666666654332 222 23456777777788888888899988887656677777788
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCCchHHH-----HHhhhhhhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHh
Q 005481 324 MGVFADFALVEQGKQIHAYAAKVPSGLDTSVSN-----SIVDMYLKCGLIDEATELFNEMPV---KNVVTWTVIITGYGK 395 (694)
Q Consensus 324 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-----~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 395 (694)
.+.-.+.|+.+.+...++...+..-..+...++ .....|.-.+++..|...|.+++. .|++.-|.-.-+...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888999999999998877654444443333 334456667888888888888773 456666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005481 396 HGLAKEAVGLFRKMLLDDVEPDGVAYL 422 (694)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~pd~~t~~ 422 (694)
.|+..+|++..+.|.. ..|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhh
Confidence 7889999999999987 445554443
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.68 E-value=0.044 Score=45.86 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=46.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCh--hhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHH
Q 005481 185 MIAGYVLAGYSDKGLLLFRKMQEHGEIPDE--FTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYV 262 (694)
Q Consensus 185 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~ 262 (694)
+..++-..|+.++|+.+|++....|...+. ..+..+-+.+...|++++|..+++......+..+.+..+...+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556677777777777777776654432 234445555556666666666666555543221112222222333444
Q ss_pred HcCCHHHHHHHH
Q 005481 263 KCGCLVEARRVF 274 (694)
Q Consensus 263 ~~g~~~~A~~~f 274 (694)
..|+.++|.+.+
T Consensus 87 ~~gr~~eAl~~~ 98 (120)
T PF12688_consen 87 NLGRPKEALEWL 98 (120)
T ss_pred HCCCHHHHHHHH
Confidence 445555544444
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=1.2 Score=47.68 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=82.6
Q ss_pred cCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC----ceeHHHHHHHhcccCChHHHHHH
Q 005481 60 CGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPN----EFTLSTNIKASGVLSSVENGMQI 135 (694)
Q Consensus 60 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~ 135 (694)
-|++++|.+++-.|.++|.. |..+.+.|+|-...++++.= |-..| ...|..+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888887777753 55566667776666665431 11111 12355555555555556666655
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 005481 136 HGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEF 215 (694)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 215 (694)
+...-.. ..++..|.+..++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+--. |
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p--- 881 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P--- 881 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC----c---
Confidence 5443211 2345555555566665555555554 333445566667777777777666544311 1
Q ss_pred hHHHHHHHHcccCCchHHHHHH
Q 005481 216 TFTSTLKACGSLGSVGGGTQIH 237 (694)
Q Consensus 216 t~~~ll~a~~~~~~~~~a~~~~ 237 (694)
...+..|...+++.+|.++-
T Consensus 882 --kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 12344555555555555443
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.62 E-value=0.26 Score=47.45 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=38.3
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCh---hh---HHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 005481 257 LVDFYVKCGCLVEARRVFDLIEQKSV---IS---WSSLILGYAQEENLAEAMELFRQLRERS 312 (694)
Q Consensus 257 li~~y~~~g~~~~A~~~f~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 312 (694)
....+.+.|++++|.+.|+.+....+ .. .-.++.+|.+.+++++|...|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34445667888888888888764222 11 2345567788888888888888887753
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.024 Score=56.56 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 005481 486 IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVAGRSWVEVDKE 565 (694)
Q Consensus 486 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 565 (694)
..++..|...|.+.+++..|++..++.++++|+|..+...-+.+|...|.++.|+..++++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 3456777788899999999999999999999999999999999999999999999999999763
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 005481 566 IHFFYGGDDTHPLTEKIHQVLMEMEKRMK 594 (694)
Q Consensus 566 ~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 594 (694)
.|.++.|...|..+..+++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIR 339 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHH
Confidence 4666777777777776666
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.60 E-value=0.09 Score=55.21 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=94.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHc
Q 005481 93 NAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFD 172 (694)
Q Consensus 93 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~ 172 (694)
.+-+-+.-+++|.++|-.|+.... ...|+-.|.+.+|.++|.+ .|.+ |.-+.+|.....+|.|.++..
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 344556667888888888886543 3446667888888887753 3432 445666766667777777664
Q ss_pred cCCC--------------CCcccHHHHHHHHHhcCChhHHHHHHHH------HHHCCCC---CChhhHHHHHHHHcccCC
Q 005481 173 VMPA--------------KSLITWNAMIAGYVLAGYSDKGLLLFRK------MQEHGEI---PDEFTFTSTLKACGSLGS 229 (694)
Q Consensus 173 ~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~ll~a~~~~~~ 229 (694)
.-.. +|+.--.+....+..+|+.++|.++.-+ +.+-+-+ .+..+...+..-+.+...
T Consensus 683 ~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 4321 1222222334455666777777665322 1111211 233344444444455556
Q ss_pred chHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 005481 230 VGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ 279 (694)
Q Consensus 230 ~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 279 (694)
+..|.++|..+-.. .+++++....+++++|.++-++.++
T Consensus 763 ~gLAaeIF~k~gD~-----------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGDL-----------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cchHHHHHHHhccH-----------HHHhhheeecccchHhHhhhhhCcc
Confidence 66666666655321 3466777777788888777777765
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=0.95 Score=45.44 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhcc
Q 005481 253 IAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFAL 332 (694)
Q Consensus 253 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 332 (694)
+.+..+.-+...|+...|.++-.+..-++-.-|-..+.+++..++|++-.++-.. +-.++-|-.++.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344456667788899999999888888888999999999999999887765432 1234778888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHH
Q 005481 333 VEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATEL 374 (694)
Q Consensus 333 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 374 (694)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 88777766551 124567788888888888655
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.52 E-value=0.0082 Score=45.51 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHH
Q 005481 462 DSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYV 524 (694)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 524 (694)
..|.+.+++++|.+.++.+ ...|+ ...|......+...|++++|...+++.++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677888888888888887 44454 556777888889999999999999999999998765543
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.13 Score=48.05 Aligned_cols=137 Identities=9% Similarity=0.007 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccC----CCCChhHHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKR----MKPRIEHYSCI 460 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 460 (694)
.-++++..+.-+|.+.-.+.++++.++...+-+..-...|.+.-.+.|+.+.|..+|+...+..+ +.-+.-+...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566777777888888999999999876666777788888888999999999999997765332 22223333334
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcc
Q 005481 461 VDSLGRAGRLDEAKNLIESMPVK-P-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPV 521 (694)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 521 (694)
...|.-++++.+|...+.+.+.. | |+...|+-.-...-.|+...|.+..+.+++..|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 45566677888888888887432 2 2333343333344567888888888888888886443
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.42 E-value=0.031 Score=54.28 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=60.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005481 421 YLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS----IAIWQTLLS 494 (694)
Q Consensus 421 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 494 (694)
|...+......|++++|...|+.+.+.+.-.+- ...+..+...|...|++++|...|+.+ ...|+ ...|-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334446666666666666653311110 234555666666777777777766665 11122 334555566
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 495 ACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 495 a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 67788999999999999999988754
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.27 E-value=0.064 Score=47.23 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=70.6
Q ss_pred HccCcHHHHHHHHHHHhhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMK--PRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGR 506 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~ 506 (694)
...|+.+.+...+..+...+.-. |+... ..........++++ -......++..+...|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 45567777777777776643211 11111 11222223333332 1234566777788999999999
Q ss_pred HHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 507 EVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
..+++++..+|.+...|..+..+|...|+..+|.++++.+..
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998854
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.20 E-value=1.2 Score=42.17 Aligned_cols=194 Identities=23% Similarity=0.187 Sum_probs=131.4
Q ss_pred chHHHHHhhhhhhcCCHHHHHHHHccCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005481 352 TSVSNSIVDMYLKCGLIDEATELFNEMP-----VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLS 426 (694)
Q Consensus 352 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 426 (694)
..........+...+.+..+...+.... ......+..+...+...+++.++...+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 3455556666777777777777766643 234455666666777777788888888887764433311 2222222
Q ss_pred -HHHccCcHHHHHHHHHHHhhccCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 005481 427 -ACSHSGLVEESQEYFSRLCNDKRMKP----RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS--IAIWQTLLSACRV 498 (694)
Q Consensus 427 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~a~~~ 498 (694)
++...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888888744 233 2334444455567788888888888776 33333 5667777778888
Q ss_pred cCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 499 HGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 499 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.++.+.|...+...++..|.....+..++..+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888875566677777777777788888877776653
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.09 E-value=0.0077 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 005481 489 WQTLLSACRVHGDLELGREVGEIL 512 (694)
Q Consensus 489 ~~~ll~a~~~~g~~~~a~~~~~~~ 512 (694)
+..+...+...|++++|++.++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333344444444444444444443
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.06 E-value=0.052 Score=44.85 Aligned_cols=89 Identities=22% Similarity=0.189 Sum_probs=69.4
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC----cchHHHHHhHHHhcCCc
Q 005481 463 SLGRAGRLDEAKNLIESM-PVK-PSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN----PVNYVMMSNIHADAGSW 536 (694)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 536 (694)
+++..|++++|++.|.+. .+- .....||.-..+++-+|+.++|..-+++++++..+. ..+|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 566778888888888776 222 346778888889999999999999999998875432 24677788899999999
Q ss_pred hHHHHHHHHHHhCCC
Q 005481 537 NECERLRKLARSKGL 551 (694)
Q Consensus 537 ~~a~~~~~~m~~~g~ 551 (694)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877663
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.009 Score=45.99 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcC----CCC---CcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 487 AIWQTLLSACRVHGDLELGREVGEILLRL----DGD---NPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 487 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
.+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777888888888888888887754 222 246788999999999999999999988653
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=1.3 Score=44.63 Aligned_cols=148 Identities=11% Similarity=-0.013 Sum_probs=91.9
Q ss_pred HhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhh--hhhhcCCHHHHHHHHccCCCCChh---------------hHHHH
Q 005481 327 FADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVD--MYLKCGLIDEATELFNEMPVKNVV---------------TWTVI 389 (694)
Q Consensus 327 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 389 (694)
+...++.+.|.++-..+.+.... ..+..++. ++--.++.+.|...|++...-|+. .|..-
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 35567788888777766665422 11222222 233457788888888877632221 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHH
Q 005481 390 ITGYGKHGLAKEAVGLFRKMLLD---DVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLG 465 (694)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 465 (694)
..-..+.|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.-.+...+ +.|. +..|-.-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHH
Confidence 44456788899999999888862 2444555566666677788899998888887765 4443 222333334455
Q ss_pred hcCChHHHHHHHHhC
Q 005481 466 RAGRLDEAKNLIESM 480 (694)
Q Consensus 466 ~~g~~~~A~~~~~~~ 480 (694)
-.++|++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567788888888775
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.95 E-value=2.8 Score=44.49 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=122.9
Q ss_pred CchHHHHHhhhhhhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005481 351 DTSVSNSIVDMYLKCGLIDEATELFNEMPVK---NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSA 427 (694)
Q Consensus 351 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 427 (694)
+...|...++.-.+.|+.+.+.-+|++...| -...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556777788888899999999999988754 2335555555555558888888777766654333333332222233
Q ss_pred HHccCcHHHHHHHHHHHhhccCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 005481 428 CSHSGLVEESQEYFSRLCNDKRMKPRI-EHYSCIVDSLGRAGRLDEAK---NLIESM-PVKPSIAIWQTLLS-----ACR 497 (694)
Q Consensus 428 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----a~~ 497 (694)
+-..|+.+.|..+++.+..++ |+. ..-.--+....|.|..+.+. +++... +.+-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 567899999999999998754 653 33344467778899998888 555444 22223233222222 234
Q ss_pred hcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcC
Q 005481 498 VHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAG 534 (694)
Q Consensus 498 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 534 (694)
..++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5688999999999999999999999999988776665
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.89 E-value=0.035 Score=55.06 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=85.4
Q ss_pred cchHHHHHHHhhhccHHHHHHHHHHHHh----cCCC-CCchHHHHHhhhhhhcCCHHHHHHHHccCC-------CC--Ch
Q 005481 318 FVLSSMMGVFADFALVEQGKQIHAYAAK----VPSG-LDTSVSNSIVDMYLKCGLIDEATELFNEMP-------VK--NV 383 (694)
Q Consensus 318 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~ 383 (694)
..|..+-..|.-+|+++.+...|+.-.. .|-. .....+..|.+++.-.|+++.|.+.|+... .+ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555566667888888888775432 2211 123456677788888889999888887643 23 33
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 384 VTWTVIITGYGKHGLAKEAVGLFRKMLL----DD-VEPDGVAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
.+..+|...|.-...+++|+..+.+-+. .+ ..-...++.+|..++...|..++|..+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4666788888888888888888776432 11 112335778888888888888888776665443
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.88 E-value=2.2 Score=42.68 Aligned_cols=284 Identities=13% Similarity=0.100 Sum_probs=141.4
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHc--ccCCchHHHHHHHHHHHhCCCCCcchhh--HH
Q 005481 182 WNAMIAGYVL--AGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACG--SLGSVGGGTQIHGFLITSGFPYSVKTVI--AG 255 (694)
Q Consensus 182 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~~ 255 (694)
|.+|-.++.. .|+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.+++-|+.|... |.... ..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHH
Confidence 3344444433 34444444443333211 3344455555555433 246666666666666532 11111 11
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CccCccc--hHHHHHHHhh
Q 005481 256 SLVDFYVKCGCLVEARRVFDLIEQK--S-VISWSSLILGYAQEENLAEAMELFRQLRERS-LQVDGFV--LSSMMGVFAD 329 (694)
Q Consensus 256 ~li~~y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t--~~~ll~~~~~ 329 (694)
.|.---.+.|..+.|+.+-++.-.. . .-.|.+.+...+..|+++.|+++.+.-+... +.+|..- -..++.+-+.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 1222223566777777666655432 1 2357778888889999999999888766532 3444321 2223332211
Q ss_pred ---hccHHHHHHHHHHHHhcCCCCCchH-HHHHhhhhhhcCCHHHHHHHHccCC--CCChhhHHHHHHHHHhcCCHHHHH
Q 005481 330 ---FALVEQGKQIHAYAAKVPSGLDTSV-SNSIVDMYLKCGLIDEATELFNEMP--VKNVVTWTVIITGYGKHGLAKEAV 403 (694)
Q Consensus 330 ---~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 403 (694)
..+...++..-....|.. |+..- .-.-...|.+.|++.++-.+++.+- +|....|. +-.+.+.|+ .++
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHH
Confidence 123444444444444432 22111 1122345667777777777776664 23333332 122233333 333
Q ss_pred HHHHHHHH-CCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC
Q 005481 404 GLFRKMLL-DDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGR-AGRLDEAKNLIESM 480 (694)
Q Consensus 404 ~~~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 480 (694)
.-+++... ..++||. .+...+..+-...|++..|+.--+...+ ..|....|..|.+.-.. .|+-.++...+-+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33333322 1245554 4555566666666777666665555544 45666666666665433 36666666666554
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.86 E-value=0.85 Score=38.09 Aligned_cols=139 Identities=18% Similarity=0.128 Sum_probs=81.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHH
Q 005481 395 KHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAK 474 (694)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 474 (694)
-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 4566777777777766532 22333334333333334444555555554433332 344444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCc
Q 005481 475 NLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLK 552 (694)
Q Consensus 475 ~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 552 (694)
.-+-.++ .+......-+.+...+|.-+.-.++++.+.+.+..+|+...-++++|.+.|...++.++++++-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444442 134445666778889999999999999998766566899999999999999999999999999999875
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.80 E-value=0.057 Score=55.30 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 005481 454 IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSI----AIWQTLLSACRVHGDLELGREVGEILLRL 515 (694)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 515 (694)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555555555555555553 444442 23566666666666666666666666655
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.66 E-value=0.74 Score=43.10 Aligned_cols=48 Identities=8% Similarity=-0.000 Sum_probs=36.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCc---chHHHHHhHHHhcCCchHHH
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGDNP---VNYVMMSNIHADAGSWNECE 540 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 540 (694)
..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4457788999999999999999988754 45677888999999888544
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.63 E-value=0.34 Score=45.35 Aligned_cols=180 Identities=13% Similarity=0.059 Sum_probs=82.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhh
Q 005481 257 LVDFYVKCGCLVEARRVFDLIEQ--KS----VISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADF 330 (694)
Q Consensus 257 li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 330 (694)
....+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 33445566777777777776653 11 1344556677777888888888888877642221122222222222111
Q ss_pred ccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005481 331 ALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKML 410 (694)
Q Consensus 331 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (694)
....... ......+...+|...| ..++.-|=......+|...+..+.
T Consensus 91 ~~~~~~~----------------------~~~~D~~~~~~A~~~~-----------~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 91 KQIPGIL----------------------RSDRDQTSTRKAIEEF-----------EELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHHHHH-----------------------TT---HHHHHHHHHH-----------HHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HhCccch----------------------hcccChHHHHHHHHHH-----------HHHHHHCcCchHHHHHHHHHHHHH
Confidence 1100000 0011111222333332 233444444444445544444333
Q ss_pred HCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005481 411 LDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEA 473 (694)
Q Consensus 411 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 473 (694)
.. - ...-..+..-|.+.|.+..|..-++.+++++.-.+. .+....|+..|.+.|..+.|
T Consensus 138 ~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 138 NR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 21 0 011123455567777777777777777775522222 23456667777777776644
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=95.56 E-value=0.54 Score=48.50 Aligned_cols=142 Identities=10% Similarity=0.055 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHH-HCCCCCCHH-HHHHHHHHHHc---------cCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHh
Q 005481 399 AKEAVGLFRKML-LDDVEPDGV-AYLAVLSACSH---------SGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGR 466 (694)
Q Consensus 399 ~~~A~~~~~~m~-~~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 466 (694)
.+.|+.+|.+.. .+.+.|+.. .|..+..++.. .....+|.++-++..+ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 557888888888 223667663 34333332211 2345567777777766 344 45666777777788
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchH--HHHHhHHHhcCCchHHHHH
Q 005481 467 AGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNY--VMMSNIHADAGSWNECERL 542 (694)
Q Consensus 467 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~ 542 (694)
.|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.++++++++|....+- ...+++|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999887 56676 44576666777888999999999999999999654333 33344566555 4555555
Q ss_pred HH
Q 005481 543 RK 544 (694)
Q Consensus 543 ~~ 544 (694)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 53
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.54 E-value=0.14 Score=43.33 Aligned_cols=46 Identities=26% Similarity=0.465 Sum_probs=26.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHH
Q 005481 449 RMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM----PVKPSIAIWQTLLS 494 (694)
Q Consensus 449 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~ 494 (694)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455666666666666666666666665543 44444566666665
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.49 E-value=0.17 Score=42.92 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=66.8
Q ss_pred chHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005481 352 TSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHS 431 (694)
Q Consensus 352 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 431 (694)
..++.+++.++++.|+++....+.+..=.-|+. +-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345566666667777766666666544311111 0000000 112234779999999999999999
Q ss_pred CcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Q 005481 432 GLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLG 465 (694)
Q Consensus 432 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 465 (694)
|++..|.++.+...+.++++-+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998888888988876443
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=95.26 E-value=0.32 Score=50.13 Aligned_cols=117 Identities=13% Similarity=0.072 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHH---------hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005481 433 LVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLG---------RAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHG 500 (694)
Q Consensus 433 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g 500 (694)
..+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 457788899999854557777 334444443322 123345666776665 3333 5667777777778888
Q ss_pred ChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 501 DLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 501 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
+.+.|...++++..++|+.+.+|...+....-.|+.++|.+.++...+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999986543
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.2 Score=50.28 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHh
Q 005481 455 EHYSCIVDSLGRAGRLDEAKNLIESM-PVK-PSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHAD 532 (694)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 532 (694)
..+..|.-.|.+.+++.+|++.-++. ... +|.-..--=..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667777888888888888887776 333 3455555567789999999999999999999999998888888888777
Q ss_pred cCCchHH-HHHHHHHHhC
Q 005481 533 AGSWNEC-ERLRKLARSK 549 (694)
Q Consensus 533 ~g~~~~a-~~~~~~m~~~ 549 (694)
..+..+. .+++..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7766664 7788888653
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.11 E-value=3 Score=39.23 Aligned_cols=160 Identities=22% Similarity=0.190 Sum_probs=108.1
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCCC--CC-hhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMPV--KN-VVTWTVIIT-GYGKHGLAKEAVGLFRKMLLDDVEP----DGVAYLAVL 425 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll 425 (694)
.+..+...+...+....+...+..... ++ ...+..... .+...|++++|...|.+... ..| ....+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhh
Confidence 333444445555556666666655542 11 122222333 67788899999999988855 333 234444445
Q ss_pred HHHHccCcHHHHHHHHHHHhhccCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 005481 426 SACSHSGLVEESQEYFSRLCNDKRMKPR--IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGD 501 (694)
Q Consensus 426 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~ 501 (694)
..+...++.+++...+..... ..++ ...+..+...+...+.+++|...+... ...|+ ...+..+...+...+.
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 175 ALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR 251 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence 556778899999999998877 2333 567888888899999999999998887 44454 4555556665567778
Q ss_pred hHHHHHHHHHHHcCCCC
Q 005481 502 LELGREVGEILLRLDGD 518 (694)
Q Consensus 502 ~~~a~~~~~~~~~~~p~ 518 (694)
.+.+...+++.++..|.
T Consensus 252 ~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 252 YEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999998886
No 234
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.53 Score=45.50 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCCCHH-HHHH
Q 005481 417 DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAG---RLDEAKNLIESM-PVKPSIA-IWQT 491 (694)
Q Consensus 417 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p~~~-~~~~ 491 (694)
|...|..|..+|...|+.+.|...|....+..| ++.+.+..+..++..+. ...++.++|+++ ..+|+.. +..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456788888888888888888888888876332 23455555555544332 345778888887 5556544 4555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 492 LLSACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
|..++...|++.+|...++.|++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 55578899999999999999998887653
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.02 E-value=3 Score=47.85 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHhh
Q 005481 254 AGSLVDFYVKCG--CLVEARRVFDL 276 (694)
Q Consensus 254 ~~~li~~y~~~g--~~~~A~~~f~~ 276 (694)
...++..|.+.+ .++.|+....+
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~ 817 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKE 817 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334444555544 34444444333
No 236
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=7.6 Score=42.68 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcc
Q 005481 148 PVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGS 226 (694)
Q Consensus 148 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 226 (694)
..++..+|+.+...|++++|-...-.|...+..-|.-.+..+...++......+ +.......+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 346677788888888888888888888888888888888877777776543332 2222222445566666666654
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.87 E-value=0.042 Score=34.14 Aligned_cols=32 Identities=31% Similarity=0.222 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 487 AIWQTLLSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 487 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888889999999999999999999886
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.80 E-value=0.57 Score=40.14 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=40.7
Q ss_pred HHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 463 SLGRAGRLDEAKNLIESM----PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
...+.|++++|.+.|+.+ |..|- ...--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 344567777777777766 22222 33455677788888899999999999999888765
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.74 E-value=0.065 Score=33.16 Aligned_cols=33 Identities=33% Similarity=0.295 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 487 AIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 487 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457777888888899999999999998888874
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.61 E-value=0.61 Score=48.21 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=88.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHH--HhcCCh
Q 005481 393 YGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSL--GRAGRL 470 (694)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~ 470 (694)
--+..+...-++.-++.++ +.||..+-..++ +--.+..+.++.++|++..+. + ...+ .... ...|.
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~l---g~s~~~~~~g~- 245 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASL---GKSQFLQHHGH- 245 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhh---chhhhhhcccc-
Confidence 3445666677777777776 667775443333 233456678888888887661 1 0000 0000 01111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC--CcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 471 DEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGD--NPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 471 ~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
..+.+..-...|-..+-..|...+++.|+.++|.+.++.+++..|. +-.....|+..|-..+++.++..++.+--+
T Consensus 246 --~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 --FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred --hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111111112233444455667778889999999999998877663 456778888889999999999888887644
Q ss_pred CCCccCC
Q 005481 549 KGLKKVA 555 (694)
Q Consensus 549 ~g~~~~~ 555 (694)
....+..
T Consensus 324 i~lpkSA 330 (539)
T PF04184_consen 324 ISLPKSA 330 (539)
T ss_pred ccCCchH
Confidence 3333333
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.31 Score=46.14 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=80.9
Q ss_pred HHHHHHccCC--CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------
Q 005481 370 EATELFNEMP--VKNVVTWTVIITGYGKH-----GLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSG---------- 432 (694)
Q Consensus 370 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g---------- 432 (694)
..+..|..+. ++|-.+|-+++..|..+ +..+=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 67888999988888754 556666777899999999999999999999865542
Q ss_pred ------cHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChH
Q 005481 433 ------LVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLD 471 (694)
Q Consensus 433 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 471 (694)
+-+=++.++++|.. +|+.||.++-..|+++++|.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 22337889999987 999999999999999999998754
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.50 E-value=6.5 Score=40.23 Aligned_cols=397 Identities=12% Similarity=0.050 Sum_probs=196.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 005481 145 EWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSL---ITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTL 221 (694)
Q Consensus 145 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 221 (694)
+.|+..|-.|+.-|...|.+++.++++++|..|-+ .+|..-|++-....++.....+|.+-+......|. |..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL--W~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL--WMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH--HHHHH
Confidence 56778888888888888889998999988888744 47888888877788888888888887776544333 33333
Q ss_pred HHHcccCCch------HHHHHHHHHHH-hCCCCCcchhhHHHHHHHHH---------HcCCHHHHHHHHhhcCCC---Ch
Q 005481 222 KACGSLGSVG------GGTQIHGFLIT-SGFPYSVKTVIAGSLVDFYV---------KCGCLVEARRVFDLIEQK---SV 282 (694)
Q Consensus 222 ~a~~~~~~~~------~a~~~~~~~~~-~g~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~f~~~~~~---~~ 282 (694)
.--.+....- ...+.++..+. .+++| .....|+..++..- ...++|..++.+.++... +.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~-~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEP-QSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccc-cccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 3222222111 12244444443 23332 23344555544332 223445556666665531 11
Q ss_pred -------hhHHHHHHH-----HHh--CCCHHHHHHHHHHHHh--cCCccCcc----chHHH-----------HHHHhhh-
Q 005481 283 -------ISWSSLILG-----YAQ--EENLAEAMELFRQLRE--RSLQVDGF----VLSSM-----------MGVFADF- 330 (694)
Q Consensus 283 -------~~~~~li~~-----~~~--~g~~~~A~~~~~~m~~--~g~~pd~~----t~~~l-----------l~~~~~~- 330 (694)
..|..=+.- +.. .--+..|...++++.. .|+..-.. |++-+ |..-...
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 112111111 110 1123456666666543 34332221 11111 1100000
Q ss_pred -----ccH-HHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHhcCCHHHH
Q 005481 331 -----ALV-EQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV--KNVVTWTVIITGYGKHGLAKEA 402 (694)
Q Consensus 331 -----~~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A 402 (694)
+-. ....-+|..+... +.....+|----..+...++-+.|.....+... |.... -+...|....+.++.
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~--~lse~yel~nd~e~v 352 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM--FLSEYYELVNDEEAV 352 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe--eHHHHHhhcccHHHH
Confidence 000 0111112221111 011112222122223345566666665544321 21100 011111111222111
Q ss_pred HHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC
Q 005481 403 VGLFRKMLL--------------DDV---------------EPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR 453 (694)
Q Consensus 403 ~~~~~~m~~--------------~g~---------------~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 453 (694)
...|++..+ .+. .-=...|...+++-.+..-++.|+.+|-+..+..-+.++
T Consensus 353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 111111110 011 011234556666666777788888888888773225677
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHcCCCC--CcchHHHHHhH
Q 005481 454 IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAI-WQTLLSACRVHGDLELGREVGEILLRLDGD--NPVNYVMMSNI 529 (694)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 529 (694)
+..+++++.-++ .|+..-|..+|+-- ..-||... -.-.+.-+..-++-+.|..+|+..++.-.+ -...|..+++-
T Consensus 433 vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~Y 511 (660)
T COG5107 433 VYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEY 511 (660)
T ss_pred eeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Confidence 778888887665 56777788888753 33345444 344555556667778888888866542221 13567777766
Q ss_pred HHhcCCchHHHHHHHHHHh
Q 005481 530 HADAGSWNECERLRKLARS 548 (694)
Q Consensus 530 ~~~~g~~~~a~~~~~~m~~ 548 (694)
=..-|+...+..+-+.|.+
T Consensus 512 Es~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 512 ESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhhcchHHHHhHHHHHHH
Confidence 6677777777766666654
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=0.25 Score=47.09 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=29.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCC---cchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 492 LLSACRVHGDLELGREVGEILLRLDGDN---PVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
|+.++...|+++.|...|..+.+-.|++ |..+.-|+.+..+.|+.++|..+++...+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444455555555555555555444332 34455555555555555555555555544
No 244
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=9.7 Score=41.68 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005481 415 EPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLS 494 (694)
Q Consensus 415 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 494 (694)
.-...|.+--+.-+...|+..+|.++-.... -||-..|..=+.+++..+++++-+++-+++. .+.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3344556666777888899999988876653 4888899999999999999999999888863 2344677888
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 495 ACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 495 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
+|.+.|+.++|...+-+.- .+.....+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~--------~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG--------GLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccC--------ChHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999998877652 223678899999999999876544
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.99 E-value=3.4 Score=35.84 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCCh
Q 005481 15 LADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNA 94 (694)
Q Consensus 15 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 94 (694)
...++..+...+........+..+.+.+ ..++...|.++..|++.. .+.....+.. ..+......+++.|.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3456666666677888888888887776 467778888888888753 3344444442 23344455566666666666
Q ss_pred HHHHHHHHHh
Q 005481 95 KACLSLFCQM 104 (694)
Q Consensus 95 ~~A~~~~~~m 104 (694)
+++.-++..+
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 6666666655
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.86 E-value=0.51 Score=41.44 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHhh----ccCCCCChhH
Q 005481 386 WTVIITGYGKHGLAKEAVGLFRKMLLDDVEP-DGVAYLAVLSACSHSGLVEESQEYFSRLCN----DKRMKPRIEH 456 (694)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 456 (694)
...++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.++|+.+.+ +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555666677777777777777663 33 345677777777777777777777666533 3466665443
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.77 E-value=0.73 Score=48.54 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=85.8
Q ss_pred HHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCCh
Q 005481 392 GYGKHGLAKEAVGLFRK-MLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRL 470 (694)
Q Consensus 392 ~~~~~g~~~~A~~~~~~-m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 470 (694)
.....|+++++.++... -.-..++ ..-...++.-+.+.|..+.|+++-..-. .-.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence 34457788887666641 1111122 2335667777778888888877543221 234566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 471 DEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 471 ~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
+.|.++.++.. +...|..|......+|+.+.|++++++. .-+..|.-+|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988887754 7788999999999999999999999884 557778888888898887777777766654
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.74 E-value=6.3 Score=40.16 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC---Chh----hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCccCccchHHHHH
Q 005481 256 SLVDFYVKCGCLVEARRVFDLIEQK---SVI----SWSSLILGYAQ---EENLAEAMELFRQLRERSLQVDGFVLSSMMG 325 (694)
Q Consensus 256 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 325 (694)
.|+-.|-...+++...++.+.+... ++. .-....-++-+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777643 111 11123334455 7888888888888666556667777776665
Q ss_pred HH
Q 005481 326 VF 327 (694)
Q Consensus 326 ~~ 327 (694)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.73 E-value=2.7 Score=45.01 Aligned_cols=157 Identities=16% Similarity=0.090 Sum_probs=95.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----ccCcHHHHHHHHHHHhhccCCCCChhHHH
Q 005481 389 IITGYGKHGLAKEAVGLFRKMLLDD-VEPDG-----VAYLAVLSACS----HSGLVEESQEYFSRLCNDKRMKPRIEHYS 458 (694)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 458 (694)
+++...-.|+-+.+++.+.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+.+ |+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHHH
Confidence 4444455566666666665544421 11100 11222222222 2456777888888887743 6655443
Q ss_pred HH-HHHHHhcCChHHHHHHHHhCC-CC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHH-HHhHH
Q 005481 459 CI-VDSLGRAGRLDEAKNLIESMP-VK---P--SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVM-MSNIH 530 (694)
Q Consensus 459 ~l-i~~~~~~g~~~~A~~~~~~~~-~~---p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~ 530 (694)
.. ...+...|++++|++.|+++- .+ | ....+--+...+....++++|...+.++.+...-....|.- .+-+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33 456677888888888888652 11 1 12334445666778899999999999999877765555544 45567
Q ss_pred HhcCCc-------hHHHHHHHHHHh
Q 005481 531 ADAGSW-------NECERLRKLARS 548 (694)
Q Consensus 531 ~~~g~~-------~~a~~~~~~m~~ 548 (694)
...|+. ++|.++++++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 788888 778888777654
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.46 E-value=3.3 Score=35.94 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhH
Q 005481 118 TNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDK 197 (694)
Q Consensus 118 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 197 (694)
.++..+...+.......+++.+++.+ ..+...+|.++..|++.+ .++....++. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444445555555555555554 245556666666666543 2333333331 1223333444455555555555
Q ss_pred HHHHHHHH
Q 005481 198 GLLLFRKM 205 (694)
Q Consensus 198 A~~~~~~m 205 (694)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55554443
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.33 E-value=11 Score=38.73 Aligned_cols=447 Identities=13% Similarity=0.084 Sum_probs=232.7
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHhhhCCC
Q 005481 33 QLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNV---VSWTALMCGFLQNGNAKACLSLFCQMGSSSV 109 (694)
Q Consensus 33 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 109 (694)
++-+.+... +.|+.+|-.||.-|...|..++.++++++|..|-+ ..|..-|++=....++.....+|.+......
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444432 67889999999999999999999999999988754 3799999988888899999999999887544
Q ss_pred CCCceeHHHHHHHhcccCChHH------HHHHHHHHHH-hCCCCCh-hHHHHHHHHHH---hcC------ChHHHHHHHc
Q 005481 110 KPNEFTLSTNIKASGVLSSVEN------GMQIHGMCMK-SGFEWNP-VVGNSIIDMYS---KCG------RINEAARMFD 172 (694)
Q Consensus 110 ~p~~~t~~~ll~a~~~~~~~~~------a~~~~~~~~~-~g~~~~~-~~~~~ll~~y~---~~g------~~~~A~~~f~ 172 (694)
. ...|..-|.-..+.+..-. --+.++.++. .+++|-. ..|+..+...- ..| ++|..++.+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 3 4455555554444332221 2234444443 2444432 34444443321 223 3555666666
Q ss_pred cCCC-C--Ccc-cHH------HHHHH-----HHh--cCChhHHHHHHHHHHH--CCCCC----ChhhHHHHHHHHcccCC
Q 005481 173 VMPA-K--SLI-TWN------AMIAG-----YVL--AGYSDKGLLLFRKMQE--HGEIP----DEFTFTSTLKACGSLGS 229 (694)
Q Consensus 173 ~~~~-~--~~~-~~~------~li~~-----~~~--~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~a~~~~~~ 229 (694)
++.. | +.. .|+ .=+.. ++. .--+..|...+++... .|... +..|++-+-+ ..+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r----~s~ 261 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR----TSD 261 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----ccc
Confidence 6653 1 111 122 11111 110 1113455555555532 34322 1222222111 000
Q ss_pred chHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005481 230 VGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLR 309 (694)
Q Consensus 230 ~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (694)
..-......=.+.++....++.. .-|. |+ ++.+...|- -....|----.-+...++-+.|+.....-.
T Consensus 262 -S~WlNwIkwE~en~l~L~~~~~~--qRi~-y~----~~q~~~y~~----~~~evw~dys~Y~~~isd~q~al~tv~rg~ 329 (660)
T COG5107 262 -SNWLNWIKWEMENGLKLGGRPHE--QRIH-YI----HNQILDYFY----YAEEVWFDYSEYLIGISDKQKALKTVERGI 329 (660)
T ss_pred -chhhhHhhHhhcCCcccCCCcHH--HHHH-HH----HHHHHHHhh----hhHHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 00001111111222221111100 0000 00 001111100 012233333333445566666666554422
Q ss_pred hcCCccCccchHHHHHHHhhhcc-HHHHHHHHHHHHhcCCCCCchHHHHHhhhhhh---------cCCHHHHHHHHccCC
Q 005481 310 ERSLQVDGFVLSSMMGVFADFAL-VEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLK---------CGLIDEATELFNEMP 379 (694)
Q Consensus 310 ~~g~~pd~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~ 379 (694)
|+...++..++-|..+.+ -+.....++...+ .|..-|.+ -|+++...+++-+-.
T Consensus 330 -----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~ 393 (660)
T COG5107 330 -----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRI 393 (660)
T ss_pred -----cCCCchheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHH
Confidence 222223333443333222 1211111211110 01111110 122222222222212
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHH-
Q 005481 380 VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDD-VEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHY- 457 (694)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~- 457 (694)
.+-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...+ ||...|
T Consensus 394 ~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~ 469 (660)
T COG5107 394 NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYK 469 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHH
Confidence 2344567777777777777888888999888888 5677777777776544 577888888888766633 443333
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 458 SCIVDSLGRAGRLDEAKNLIESM--PVKPS--IAIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
+-.++-+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.++-|..
T Consensus 470 ~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 470 EKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 45566677888888888888865 23333 5678888888888899888888888888888864
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=0.77 Score=44.71 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=112.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHH----HHHHHhcCCh
Q 005481 395 KHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCI----VDSLGRAGRL 470 (694)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~ 470 (694)
-+|...+|-..++++++. .+-|..++.-.-++|...|+.+.-...++++... -.|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888888899998874 5567778888888999999999999999888763 24555444333 3445688999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC----CcchHHHHHhHHHhcCCchHHHHHHH
Q 005481 471 DEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGD----NPVNYVMMSNIHADAGSWNECERLRK 544 (694)
Q Consensus 471 ~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (694)
++|++.-++. .+.| |.-.-.++.......|+..++.+...+--..-.+ -...|-..+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 4444 3444556666677888899888877764322111 12455566677778899999999998
Q ss_pred HHHhCCCccCCc
Q 005481 545 LARSKGLKKVAG 556 (694)
Q Consensus 545 ~m~~~g~~~~~~ 556 (694)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755444555444
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=5.1 Score=37.59 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcC----CCCCcchHH
Q 005481 457 YSCIVDSLGRAGRLDEAKNLIESMP-------VKPSI-AIWQTLLSACRVHGDLELGREVGEILLRL----DGDNPVNYV 524 (694)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 524 (694)
|......|.|..+++||-..|.+-. .-|+. ..+-+.+-.+....++..|++.++.--+. .|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444556666667776665554431 11221 12333334445556777777777765443 345555555
Q ss_pred HHHhHHHhcCCchHHHHHH
Q 005481 525 MMSNIHADAGSWNECERLR 543 (694)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~ 543 (694)
.|...| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 555554 356666665544
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=0.82 Score=43.63 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred ccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChH
Q 005481 430 HSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM----PVKPS-IAIWQTLLSACRVHGDLE 503 (694)
Q Consensus 430 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~a~~~~g~~~ 503 (694)
+.|++..|...|...++.+.-.+ ....+-.|...+...|++++|...|..+ |..|- +..+--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34555666666655555331111 1223444566666666666666665554 22222 234444555556667777
Q ss_pred HHHHHHHHHHcCCCCCcc
Q 005481 504 LGREVGEILLRLDGDNPV 521 (694)
Q Consensus 504 ~a~~~~~~~~~~~p~~~~ 521 (694)
+|...++++.+.-|+.+.
T Consensus 233 ~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 233 EACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHCCCCHH
Confidence 777777777777776543
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.23 E-value=3.4 Score=36.23 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=60.1
Q ss_pred HHHHHccCcHHHHHHHHHHHhhccCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 005481 425 LSACSHSGLVEESQEYFSRLCNDKRMKPRIE-HYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAIWQTLLSACRVHGDL 502 (694)
Q Consensus 425 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~a~~~~g~~ 502 (694)
++.-...++.+++..+++.+.- +.|... .-..-...+.+.|++.+|+.+|+++ .-.|....-..|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3344566788888888888865 566533 3333455677888999999999888 3345555566777777666555
Q ss_pred HHHHHHHHHHHcCCCC
Q 005481 503 ELGREVGEILLRLDGD 518 (694)
Q Consensus 503 ~~a~~~~~~~~~~~p~ 518 (694)
..=....+++++..|+
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 5555666677776664
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.19 E-value=0.65 Score=45.73 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=22.7
Q ss_pred HHhCCCHHHHHHHHHHHHhcC--CccCccchHHHHHHHhhhccHHHHH
Q 005481 292 YAQEENLAEAMELFRQLRERS--LQVDGFVLSSMMGVFADFALVEQGK 337 (694)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~ 337 (694)
+.+..+.++|+..+.+-+.+- ...--.++..+..+.+..|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 445667777777776655421 1111233444444444555444443
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.03 E-value=3.5 Score=37.84 Aligned_cols=160 Identities=18% Similarity=0.106 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHH
Q 005481 383 VVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIV 461 (694)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 461 (694)
...||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++--.|++.-|.+-|...-+...-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45677777777888899999998888877 34433 2333333344556888888776666544332233233332222
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC-------cchHHHHHhHHHhcC
Q 005481 462 DSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN-------PVNYVMMSNIHADAG 534 (694)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 534 (694)
-+.-++.+|..-+.+--.+-|..-|+..+-.+.--.-.+ +.+++++.+-..++ .++|.-|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 233456666654433222345566766655443221111 22333333322222 468889999999999
Q ss_pred CchHHHHHHHHHHhC
Q 005481 535 SWNECERLRKLARSK 549 (694)
Q Consensus 535 ~~~~a~~~~~~m~~~ 549 (694)
..++|..+++.....
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988754
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.02 E-value=3.1 Score=35.79 Aligned_cols=113 Identities=16% Similarity=0.078 Sum_probs=53.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcC
Q 005481 391 TGYGKHGLAKEAVGLFRKMLLDDVEP--DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAG 468 (694)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 468 (694)
....+.|++++|.+.|+.+...=..+ ....-..++.++.+.+++++|...+++.++.+.-.|+ ..|...+.+++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 33445566666666666665531110 1134445556666666666666666666653322232 12333333332222
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 469 RLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 469 ~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
..+.+ +..+ ...=+..+....|...|+++++.-|++
T Consensus 97 ~~~~~---~~~~------------~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 97 QDEGS---LQSF------------FRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HhhhH---Hhhh------------cccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 11111 1111 000112233567788888888888875
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.93 E-value=1.6 Score=46.11 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=67.8
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCCh
Q 005481 116 LSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYS 195 (694)
Q Consensus 116 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 195 (694)
...+++-+-+.|-.+.|.++-..- ..-.+...++|+++.|.++-++.. +...|..|.....+.|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 445555555555555555443221 122345667888888888877665 556899999988999999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhC
Q 005481 196 DKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSG 244 (694)
Q Consensus 196 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 244 (694)
+-|.+.|.+... +..++-.|...|+.+.-.++.......|
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 988888887754 4555556666777776666666666555
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=9.7 Score=37.00 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=50.6
Q ss_pred ccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChHHHH
Q 005481 430 HSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQT---LLSACRVHGDLELGR 506 (694)
Q Consensus 430 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~a~~~~g~~~~a~ 506 (694)
..|+..++...|+...... +-+...--.|...|...|+.++|..++..+|.+-...-|.. -+....+..+..+..
T Consensus 146 ~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3444444444444444311 11123334445555555555555555555543322222222 111122222222111
Q ss_pred HHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 507 EVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
.+++-+..+|+|...-..++..|...|+.++|.+.+-.+.
T Consensus 224 -~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 -DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred -HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233344566666666666666666666666665544443
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=4.7 Score=39.08 Aligned_cols=185 Identities=15% Similarity=0.105 Sum_probs=120.1
Q ss_pred hhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 005481 360 DMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQE 439 (694)
Q Consensus 360 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 439 (694)
+.+.-...-+...+++++...+....--.-.......|++.+|..+|+......-. +...-..+..++...|+++.|..
T Consensus 111 dgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~ 189 (304)
T COG3118 111 DGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQA 189 (304)
T ss_pred cccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHH
Confidence 34443444456667777776653333334455677899999999999999885322 23566678889999999999999
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC-
Q 005481 440 YFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDG- 517 (694)
Q Consensus 440 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p- 517 (694)
++..+-.+.. .........-+..+.+.....+..++-.+..-.| |...-..|...+...|+.+.|...+=.+++.+-
T Consensus 190 iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 190 ILAALPLQAQ-DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHhCcccch-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 9998754211 1111112334566777776666666666664456 556666777788889999999887777776543
Q ss_pred -CCcchHHHHHhHHHhcCCchH-HHHHHHHH
Q 005481 518 -DNPVNYVMMSNIHADAGSWNE-CERLRKLA 546 (694)
Q Consensus 518 -~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 546 (694)
.|...-..|..++...|.-+. +.+.++++
T Consensus 269 ~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 269 FEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred ccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 455666677777766664443 33344433
No 262
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.61 E-value=16 Score=40.79 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCC-------hHHHHHHHHHHHHhCCCCChh
Q 005481 82 TALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSS-------VENGMQIHGMCMKSGFEWNPV 149 (694)
Q Consensus 82 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 149 (694)
=.+|--+.|.|++++|.++..+.... .......|...+..+....+ -+....-+.+.++.....|++
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 36777888999999999999666543 55566778888988876532 223444455555544333543
No 263
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.45 E-value=0.47 Score=42.63 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=67.9
Q ss_pred HHHHhcCChHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcC
Q 005481 462 DSLGRAGRLDEAKNLIESM----PVKP---SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAG 534 (694)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 534 (694)
+-+.+.|++++|..-|..+ |--| ..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455677777777766654 1111 23345555567788899999999999999999988888888899999999
Q ss_pred CchHHHHHHHHHHhCC
Q 005481 535 SWNECERLRKLARSKG 550 (694)
Q Consensus 535 ~~~~a~~~~~~m~~~g 550 (694)
++++|.+-++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999988753
No 264
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.45 E-value=0.69 Score=43.95 Aligned_cols=99 Identities=8% Similarity=0.042 Sum_probs=72.5
Q ss_pred HHHHHHhccC--CCCcccHHHHHHHHHhC-----CChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccC----------
Q 005481 65 GACAVFDKML--ERNVVSWTALMCGFLQN-----GNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLS---------- 127 (694)
Q Consensus 65 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------- 127 (694)
..+..|...+ ++|-.+|-+++..+... +..+=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 67888888888877643 455666667788999999999999999988765432
Q ss_pred ------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005481 128 ------SVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGR 163 (694)
Q Consensus 128 ------~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~ 163 (694)
+-+-+..++++|...|+.||..+-..|++++++.+.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 233466778888888888888888888887777665
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.16 E-value=1.1 Score=37.31 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=50.6
Q ss_pred HHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-C-CHH---HHHHHHHHHHhc
Q 005481 427 ACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVK-P-SIA---IWQTLLSACRVH 499 (694)
Q Consensus 427 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p-~~~---~~~~ll~a~~~~ 499 (694)
+.+..|+++.|++.|.+... +-| +...||.-..+|--+|+.++|++-+++. ... | ... .|-.-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34556666666666666654 333 3556666666666677777666666654 111 1 111 122223346777
Q ss_pred CChHHHHHHHHHHHcCCC
Q 005481 500 GDLELGREVGEILLRLDG 517 (694)
Q Consensus 500 g~~~~a~~~~~~~~~~~p 517 (694)
|+.+.|..-|+.+-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888877777776666554
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.11 E-value=2.4 Score=44.01 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=57.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCH--HHHHHHHHHHHh
Q 005481 423 AVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMP-V-KPSI--AIWQTLLSACRV 498 (694)
Q Consensus 423 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~a~~~ 498 (694)
.+..++.+.|+.++|.+.|+.|.+++...-+......|+..|...+.+.++..++.+.. + -|.. ..|+..+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34445566677777777777776644322234455667777777777777777776652 1 1332 234444433333
Q ss_pred cCC---------------hHHHHHHHHHHHcCCCCCc
Q 005481 499 HGD---------------LELGREVGEILLRLDGDNP 520 (694)
Q Consensus 499 ~g~---------------~~~a~~~~~~~~~~~p~~~ 520 (694)
.++ -..|.++..++++.+|.-|
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 332 1235678888888888754
No 267
>PRK15331 chaperone protein SicA; Provisional
Probab=92.02 E-value=4.7 Score=35.60 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChH
Q 005481 392 GYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLD 471 (694)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 471 (694)
-+-+.|++++|..+|+-+...+. -|..-+..|..+|-..+.+++|...|.....-.. -|...+--+...|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHH
Confidence 34455666666666666555321 1222334444444555666666666655543111 11122223445555555666
Q ss_pred HHHHHHHhC
Q 005481 472 EAKNLIESM 480 (694)
Q Consensus 472 ~A~~~~~~~ 480 (694)
+|++.|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 665555544
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.82 E-value=14 Score=36.44 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=14.4
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 005481 495 ACRVHGDLELGREVGEILL 513 (694)
Q Consensus 495 a~~~~g~~~~a~~~~~~~~ 513 (694)
.+.+.+++++|...|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4567788999988888654
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.75 E-value=1.9 Score=46.17 Aligned_cols=143 Identities=23% Similarity=0.304 Sum_probs=102.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChh-----HHHHHHHHH-H---hcCChHHH
Q 005481 403 VGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIE-----HYSCIVDSL-G---RAGRLDEA 473 (694)
Q Consensus 403 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~li~~~-~---~~g~~~~A 473 (694)
..+|+-++.. ++| .+..+++...-.|+-+.|.+.+....+..++.-... .|...+..+ . .....++|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555542 334 345666777778999999999998877555544322 233333322 2 35678899
Q ss_pred HHHHHhC-CCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHcCCCC----CcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 474 KNLIESM-PVKPSIAIWQTLLS-ACRVHGDLELGREVGEILLRLDGD----NPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 474 ~~~~~~~-~~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
.++++.+ ..-|+...|.-.-+ .++..|+.++|++.++++...... ..-.+..+++.+.-.++|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999998 45688888866654 578899999999999988753321 23567788999999999999999999998
Q ss_pred hC
Q 005481 548 SK 549 (694)
Q Consensus 548 ~~ 549 (694)
+.
T Consensus 333 ~~ 334 (468)
T PF10300_consen 333 KE 334 (468)
T ss_pred hc
Confidence 64
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.60 E-value=8.2 Score=38.38 Aligned_cols=162 Identities=9% Similarity=0.048 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCccCc---cchHHHHHHHhhhccHHHHHHHHHHHHhcC-----CCCCch
Q 005481 283 ISWSSLILGYAQEENLAEAMELFRQLRE-RSLQVDG---FVLSSMMGVFADFALVEQGKQIHAYAAKVP-----SGLDTS 353 (694)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----~~~~~~ 353 (694)
.+|-.+..++-+.-++.+++.+-+.-.. .|..|.. ....++-.+....+.++++.+.|+.+.+.- ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455555565555556666655544332 2333311 222334456666677777777777665431 122345
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCC-------CCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMP-------VKNVV------TWTVIITGYGKHGLAKEAVGLFRKMLL----DDVEP 416 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p 416 (694)
++.+|...|.+..++++|.-...+.. -.|.. +...|..++-..|...+|.+..++..+ .|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 67777778888777777654433321 12221 122344455556666666555555432 33222
Q ss_pred CH-HHHHHHHHHHHccCcHHHHHHHHHHH
Q 005481 417 DG-VAYLAVLSACSHSGLVEESQEYFSRL 444 (694)
Q Consensus 417 d~-~t~~~ll~a~~~~g~~~~a~~~~~~m 444 (694)
-. .....+.+.|...|+.+.|+.-|+.+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22 23444555566666666665555544
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.53 E-value=13 Score=35.41 Aligned_cols=141 Identities=12% Similarity=0.074 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLLDDV-EP-DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVD 462 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 462 (694)
.|-.-+..-.+.|++++|.+.|+.+..+-. .| ...+...++-++-+.+++++|....++..+.++-.||+. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 344444445566777777777777775421 11 124555566666677777777777777776565555542 222233
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC-----------------cchHH
Q 005481 463 SLGRAGRLDEAKNLIESMP-VKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN-----------------PVNYV 524 (694)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~~~~ 524 (694)
++. .|...+ ...| ..-...|...++.+++.-|++ ...=.
T Consensus 115 gLs----------~~~~i~~~~rD-------------q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRD-------------QSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccC-------------HHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 332 111110 0001 111233444445555555543 12233
Q ss_pred HHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 525 MMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.+++-|.+.|.|.-|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 5678899999999999999998865
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.51 E-value=18 Score=37.03 Aligned_cols=148 Identities=10% Similarity=0.007 Sum_probs=76.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC--hh
Q 005481 381 KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP---DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR--IE 455 (694)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 455 (694)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++...+.. +..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhccccc
Confidence 445578888888888888888888888877643211 22233333444556677788888777776511 1111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHcCCCCCcchHHHHHh
Q 005481 456 HYSCIVDSLGRAGRLDEAKNL-IESMPVKPSIAIWQTLLSACRV------HGDLELGREVGEILLRLDGDNPVNYVMMSN 528 (694)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 528 (694)
....+...+.. ..+..... ......+.-...+..+..-+.. .++.+.+...|+++.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001122222232333 378889999999999999987777777666
Q ss_pred HHH
Q 005481 529 IHA 531 (694)
Q Consensus 529 ~~~ 531 (694)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 554
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.42 E-value=0.28 Score=30.24 Aligned_cols=31 Identities=29% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 488 IWQTLLSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 488 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888774
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=29 Score=38.78 Aligned_cols=150 Identities=12% Similarity=0.137 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHhh----cCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCC---CcccHHH
Q 005481 11 ERQRLADSLRCCS----KNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLER---NVVSWTA 83 (694)
Q Consensus 11 ~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~ 83 (694)
+..+...+.+.|+ +.|+++.|.+-+-+-+ |..-. ..+|.-|....++..--..++.+.+. +..--+.
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttl 436 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP----SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTL 436 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh----HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHH
Confidence 4445555555544 6789988887665444 32222 23445555555555555556665443 3344677
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005481 84 LMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGR 163 (694)
Q Consensus 84 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~ 163 (694)
|+.+|.+.++.++-.++.+.-. .|.. .+-....+..|.+.+-+++|..+-..... ...+...+ +-..++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~n 505 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHN 505 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcC
Confidence 8999999999988777766554 3322 22356677777777777777655443322 33444444 445688
Q ss_pred hHHHHHHHccCCCC
Q 005481 164 INEAARMFDVMPAK 177 (694)
Q Consensus 164 ~~~A~~~f~~~~~~ 177 (694)
+++|.+.+..++-+
T Consensus 506 y~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 506 YEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHhcCCHH
Confidence 99999999999854
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=29 Score=38.73 Aligned_cols=155 Identities=10% Similarity=-0.011 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHH----HHhCC------------CCChhhHHHHHHHHHhcCChHHHHHHHhccCCCC
Q 005481 14 RLADSLRCCSKNLLLDYGVQLHGAL----VKMGF------------SFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERN 77 (694)
Q Consensus 14 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~------------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 77 (694)
..++++.++...+.+-.-.-++..+ ...+. .........-+++..+...++-|..+-..-..+.
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~ 364 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDE 364 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCH
Confidence 3567777777666544433333332 22230 0112234455677777777777777765543221
Q ss_pred ccc---HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005481 78 VVS---WTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSI 154 (694)
Q Consensus 78 ~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 154 (694)
... .-...+-+.+.|++++|..-|-+-... +.| ..+++-+.....+..-..+++.+.+.|+.. ...-+.|
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlL 437 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLL 437 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHH
Confidence 111 222233455778888888877665432 233 345555555556666666777777777643 3344667
Q ss_pred HHHHHhcCChHHHHHHHccCC
Q 005481 155 IDMYSKCGRINEAARMFDVMP 175 (694)
Q Consensus 155 l~~y~~~g~~~~A~~~f~~~~ 175 (694)
+..|.|.++.+.-.++.+...
T Consensus 438 LncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCC
Confidence 888888888888777776655
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.96 E-value=11 Score=37.51 Aligned_cols=134 Identities=12% Similarity=0.192 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCccCccchHHHHHHHhh--h----ccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHH
Q 005481 298 LAEAMELFRQLRERSLQVDGFVLSSMMGVFAD--F----ALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEA 371 (694)
Q Consensus 298 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~----~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 371 (694)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+|..|.+..+-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34556777888888888887777654433322 1 224455556666555432110
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCc--HHHHHHHHHH
Q 005481 372 TELFNEMPVKNVVTWTVIITGYGKHGL----AKEAVGLFRKMLLDDVEPDGV--AYLAVLSACSHSGL--VEESQEYFSR 443 (694)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~--~~~a~~~~~~ 443 (694)
.++-.++..|+.. ..++ .+.+..+|+.+...|+..+.. ....+|..+..... +..+.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1122223333222 1111 356677788888877766542 33334433322222 4577788888
Q ss_pred HhhccCCCCChhHHHHHHH
Q 005481 444 LCNDKRMKPRIEHYSCIVD 462 (694)
Q Consensus 444 m~~~~~~~p~~~~~~~li~ 462 (694)
+.+ .|+++...+|..+.-
T Consensus 208 l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 208 LKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHH-cCCccccccccHHHH
Confidence 877 678888777765543
No 277
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.82 E-value=15 Score=34.95 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=106.3
Q ss_pred chHHHHHhhhhhhcCCHHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 005481 352 TSVSNSIVDMYLKCGLIDEATELFNEMPVK------NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDD-VEPDGVAYLAV 424 (694)
Q Consensus 352 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~l 424 (694)
...|+.-+ .-.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....- -.|| .-|...
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Y 112 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYY 112 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHH
Confidence 34444433 345689999999999998732 22344456667888999999999999988743 2333 334444
Q ss_pred HHHHHc---c----CcHH---HHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHH
Q 005481 425 LSACSH---S----GLVE---ESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAI--WQTL 492 (694)
Q Consensus 425 l~a~~~---~----g~~~---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l 492 (694)
|.+.+. . .+.. +|..-|+..+.++ ||. .--.+|..-+.... |... =..+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHH
Confidence 444432 1 2222 3333333333322 331 11112222211110 1111 1234
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCc---chHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGDNP---VNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
..-|.+.|.+.-|..-++.+++.-|+.+ .++..|..+|...|..++|.+..+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4568889999999999999998766544 4566778899999999999988887654
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.67 E-value=0.43 Score=46.50 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=82.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 005481 424 VLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM-PVK-PSIAIWQTLLSACRVHG 500 (694)
Q Consensus 424 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~a~~~~g 500 (694)
-.+-|.++|.+++|+..|..... +.| +...+..-..+|.+..++..|+.-.+.+ .+. --.-.|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46678899999999999998876 566 7888888889999999998887665554 211 11223444455555668
Q ss_pred ChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHH
Q 005481 501 DLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRK 544 (694)
Q Consensus 501 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (694)
+.++|.+-++..++++|.+. .|-..|++.....|+.-+.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATK 219 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhh
Confidence 99999999999999999853 45566666666666654443
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.63 E-value=40 Score=39.37 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=84.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCccCc--cchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhc
Q 005481 288 LILGYAQEENLAEAMELFRQLRERSLQVDG--FVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKC 365 (694)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 365 (694)
++-+-..+.|+.+-+-++++++.. .++. +.... .+++++.|..-+.. .| ...+.-.++.--+.
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~ID~------~L~ry~~AL~hLs~---~~----~~~~~e~~n~I~kh 921 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFKIDD------YLKRYEDALSHLSE---CG----ETYFPECKNYIKKH 921 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhc--hhhhhheeHHH------HHHHHHHHHHHHHH---cC----ccccHHHHHHHHhc
Confidence 344445567777777777777632 1111 11111 12333333322222 12 22333334444455
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHh
Q 005481 366 GLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLC 445 (694)
Q Consensus 366 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 445 (694)
|.+.+|..++..=.+.-...|.+-..-+...+.+++|.-.|+..-+ ..-.+.+|..+|++.+|..+..++.
T Consensus 922 ~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 922 GLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred ccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 6666666655433333333444444444555666666666654322 1234556667777777777776663
Q ss_pred hccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005481 446 NDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMP 481 (694)
Q Consensus 446 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 481 (694)
. +-.--..+-..|+.-+..+++.-||-++..+..
T Consensus 993 ~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 993 E--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred C--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3 101112223566677777777777777776663
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.51 E-value=0.37 Score=30.31 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 005481 489 WQTLLSACRVHGDLELGREVGEILL 513 (694)
Q Consensus 489 ~~~ll~a~~~~g~~~~a~~~~~~~~ 513 (694)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666644
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.46 E-value=6.8 Score=32.96 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=48.0
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 005481 364 KCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSR 443 (694)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 443 (694)
.||++......+-.+. .+......-+..+...|+-+.-.+++.++.+ +-+|++.....+..||.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4455554444444332 2223344456677778888887888877765 3467777777888888888888888888888
Q ss_pred HhhccCC
Q 005481 444 LCNDKRM 450 (694)
Q Consensus 444 m~~~~~~ 450 (694)
+.+ .|+
T Consensus 146 ACe-kG~ 151 (161)
T PF09205_consen 146 ACE-KGL 151 (161)
T ss_dssp HHH-TT-
T ss_pred HHH-hch
Confidence 876 444
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=7.7 Score=38.13 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=106.7
Q ss_pred hcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HH--HHHccCcHHH
Q 005481 364 KCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAV--LS--ACSHSGLVEE 436 (694)
Q Consensus 364 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l--l~--a~~~~g~~~~ 436 (694)
..|+..+|-..++++. ..|..+|+--=.+|..+|+...-...+++.... ..||...|.-+ +- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4577777777777776 358889998889999999999999999988764 34555333222 22 3457899999
Q ss_pred HHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-C------HHHHHHHHHHHHhcCChHHHHHH
Q 005481 437 SQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESMPVKP-S------IAIWQTLLSACRVHGDLELGREV 508 (694)
Q Consensus 437 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~------~~~~~~ll~a~~~~g~~~~a~~~ 508 (694)
|.+.-++..+ +.| |.-.-.+....+-..|++.|+.++..+-...= + ..-|..-+ .+...+.++.|+++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 9999888876 555 34455677888899999999999998863110 1 11233222 23345889999999
Q ss_pred HHHHH--cCCCCCcc
Q 005481 509 GEILL--RLDGDNPV 521 (694)
Q Consensus 509 ~~~~~--~~~p~~~~ 521 (694)
|.+-+ +++.+|..
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 98644 56666653
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.05 E-value=64 Score=40.84 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCC
Q 005481 486 IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGL 551 (694)
Q Consensus 486 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 551 (694)
..+|......++..|.++.|..+.-++.+..+ +..+...+..+...|+-..|..+.+...+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 56799999999999999999999888888775 68999999999999999999999999886543
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.97 E-value=0.5 Score=29.72 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=22.4
Q ss_pred hHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 522 NYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
+|..|+++|.+.|+|++|.++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.63 E-value=23 Score=35.03 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005481 386 WTVIITGYGKHGLAKEAVGLFRKM 409 (694)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m 409 (694)
|+. ...+.+.+++++|.+.|+-.
T Consensus 250 W~~-~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 250 WNK-GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHH-HHHHHhhcCHHHHHHHHHHH
Confidence 444 33344567888888887743
No 286
>PRK09687 putative lyase; Provisional
Probab=88.85 E-value=26 Score=34.63 Aligned_cols=74 Identities=5% Similarity=-0.071 Sum_probs=38.9
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHH
Q 005481 249 VKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVF 327 (694)
Q Consensus 249 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 327 (694)
.+..+....+.++.+.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 445555556666666666433333333333333 223456666777764 577777777653 33555444444443
No 287
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.52 E-value=14 Score=40.50 Aligned_cols=184 Identities=21% Similarity=0.269 Sum_probs=108.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCc----------cchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCch
Q 005481 284 SWSSLILGYAQEENLAEAMELFRQLRERSLQVDG----------FVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTS 353 (694)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 353 (694)
+-..|+-.|....+++..+++.+.++.- ||. +.|.-.+.---+.|+-++|....--+++..-..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v--- 276 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV--- 276 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC---
Confidence 4455666777788888888888877653 321 223333333345567777776655444432111
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHc
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV---AYLAVLSACSH 430 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~ 430 (694)
.=++||-||++- +.|- +-+.|...+..+.|.+.|++.-+ +.|+.. .+..|+.+-.+
T Consensus 277 ----apDm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 277 ----APDMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred ----CCceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 114677777643 2221 12344455666788888888776 677764 34455544322
Q ss_pred cCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005481 431 SGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGE 510 (694)
Q Consensus 431 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 510 (694)
. ++...+ +. ..--.|-.+++|.|.+++-.++++- .+.+.+-.-.+++..|.++.+
T Consensus 336 ~--Fens~E----lq---------~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 H--FENSLE----LQ---------QIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred h--ccchHH----HH---------HHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHH
Confidence 1 111111 10 1122355678899999888877753 234455566789999999999
Q ss_pred HHHcCCCCC
Q 005481 511 ILLRLDGDN 519 (694)
Q Consensus 511 ~~~~~~p~~ 519 (694)
.|++++|..
T Consensus 391 ~mfKLk~P~ 399 (1226)
T KOG4279|consen 391 MMFKLKPPV 399 (1226)
T ss_pred HHhccCCce
Confidence 999999864
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.39 E-value=31 Score=38.51 Aligned_cols=212 Identities=13% Similarity=0.127 Sum_probs=83.0
Q ss_pred HHHHHHHhcCChHHHHHHHccCC---CCCcccHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCChh--hHHHH
Q 005481 153 SIIDMYSKCGRINEAARMFDVMP---AKSLITWNAMIAGYVLAGY-------SDKGLLLFRKMQEHGEIPDEF--TFTST 220 (694)
Q Consensus 153 ~ll~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~--t~~~l 220 (694)
++|--+.|||++++|.++..... .+....+-..+..|+.+.+ -+....-|++..+.....|++ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 46666789999999999883332 2344566667777766532 234555666665544433554 22233
Q ss_pred HHHHcccC-Cc-------hHHHHHHHHHHHhCCCCC---cchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHH
Q 005481 221 LKACGSLG-SV-------GGGTQIHGFLITSGFPYS---VKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLI 289 (694)
Q Consensus 221 l~a~~~~~-~~-------~~a~~~~~~~~~~g~~~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 289 (694)
|..|--.. .. +.-..+.-.+++.....+ .+..++..|=+...+-| .+.|.. ..++.. ..
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Yf 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---YF 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----------HH
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---HH
Confidence 33332211 11 111111111222221100 11122222211111111 112222 112222 23
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcC-CCCCchHHHHHhhhhhh---c
Q 005481 290 LGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVP-SGLDTSVSNSIVDMYLK---C 365 (694)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~~---~ 365 (694)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567999999998876 3345566666666665543322222111 1111111 11111345566666664 4
Q ss_pred CCHHHHHHHHccCC
Q 005481 366 GLIDEATELFNEMP 379 (694)
Q Consensus 366 g~~~~A~~~~~~~~ 379 (694)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 56666666665544
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.35 E-value=0.053 Score=47.55 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=61.1
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhH
Q 005481 118 TNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDK 197 (694)
Q Consensus 118 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 197 (694)
.++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45666777778888888888888777667788899999999999888888888874333 334556666666777777
Q ss_pred HHHHHHHH
Q 005481 198 GLLLFRKM 205 (694)
Q Consensus 198 A~~~~~~m 205 (694)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77766665
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.25 E-value=2.1 Score=41.92 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=62.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhc-
Q 005481 390 ITGYGKHGLAKEAVGLFRKMLLDDVEP-DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRA- 467 (694)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 467 (694)
.+-|.+.|.+++|+..|.+-.. +.| |.+++..-..||.+...+..|..-...++. .| ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 5678999999999999998876 677 889999999999999998888777666654 11 2335555555
Q ss_pred ------CChHHHHHHHHhC-CCCCCH
Q 005481 468 ------GRLDEAKNLIESM-PVKPSI 486 (694)
Q Consensus 468 ------g~~~~A~~~~~~~-~~~p~~ 486 (694)
|..+||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555555443 566763
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.63 E-value=2.7 Score=40.89 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=57.5
Q ss_pred hHHHHHhhhhhhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 005481 353 SVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLL-----DDVEPDGVAYLAV 424 (694)
Q Consensus 353 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~l 424 (694)
.++..++..+..+|+.+.+...+++.. .-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 345677888888888888888888776 34677899999999999999999998888765 5777776665554
Q ss_pred HHH
Q 005481 425 LSA 427 (694)
Q Consensus 425 l~a 427 (694)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.57 E-value=1.2 Score=27.32 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLL 411 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (694)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466666666666666666666666665
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.54 E-value=13 Score=33.20 Aligned_cols=135 Identities=9% Similarity=0.020 Sum_probs=77.7
Q ss_pred HHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhc-CChHHHHHHHccCC
Q 005481 98 LSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPV-VGNSIIDMYSKC-GRINEAARMFDVMP 175 (694)
Q Consensus 98 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~y~~~-g~~~~A~~~f~~~~ 175 (694)
++..+.+.+.+++|+...+..+++.+.+.|.+....+ ++..++-+|.. +.-.|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4455666667788888888888888888877554433 33444444433 333333322111 01233344444433
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhC
Q 005481 176 AKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSG 244 (694)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 244 (694)
..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...--.++....+.+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2456677788888999888888877532 223334556667666666666566666555543
No 294
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.32 E-value=1.7 Score=28.74 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLL 411 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (694)
+|..+...|...|++++|.++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666
No 295
>PRK10941 hypothetical protein; Provisional
Probab=87.20 E-value=4.2 Score=39.67 Aligned_cols=61 Identities=20% Similarity=0.114 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 489 WQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 489 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+--.+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5667778899999999999999999999999988889999999999999999988877654
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.82 E-value=14 Score=33.47 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHh
Q 005481 386 WTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV--AYLAVLSACSHSGLVEESQEYFSRLC 445 (694)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~ 445 (694)
+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444455555555555544443333331 23444444444555555554444443
No 297
>PRK09687 putative lyase; Provisional
Probab=86.82 E-value=34 Score=33.77 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=37.2
Q ss_pred CchHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005481 351 DTSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACS 429 (694)
Q Consensus 351 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 429 (694)
+..+-...+.++++.|+..-...+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 44444455555555555332222333332333 123456667777764 577777776652 345555444454443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.59 E-value=2.6 Score=36.99 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHH
Q 005481 456 HYSCIVDSL---GRAGRLDEAKNLIESM-PVKPSIAIWQTLL-SACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIH 530 (694)
Q Consensus 456 ~~~~li~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 530 (694)
..+.|++.+ .+.++.+++..++..+ ..+|.......+- .-+...|++.+|.++++.+.+-.|..+..-.+++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 344444433 2455666666666665 3444433332222 2345556666666666666555555555555555555
Q ss_pred HhcCC
Q 005481 531 ADAGS 535 (694)
Q Consensus 531 ~~~g~ 535 (694)
...|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 55554
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.81 E-value=28 Score=31.76 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHH-----HHHHHhcCChHHH
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYL--AVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCI-----VDSLGRAGRLDEA 473 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A 473 (694)
+......++...+-+-...++. .+...+...+++++|...++.... .|..+.+..+ .......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555432222222222 233456778899999988887765 3444444444 4567788999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 474 KNLIESMPVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 474 ~~~~~~~~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
+..++....+. .......-...+...|+.++|+..|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998753111 1111223345788899999999999999988754
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=64 Score=35.93 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcc
Q 005481 47 LMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGV 125 (694)
Q Consensus 47 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 125 (694)
..++...|+-|.-.|++++|-.+.-.|...+..-|..-+.-++..++.... +.-++....+.+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 456778888888889999999988888888888888888888877766543 3334433333455667777777655
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.43 E-value=33 Score=35.14 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC----CCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCC
Q 005481 485 SIAIWQTLLSACRVHGDLELGREVGEILLRLDG----DNPVNYVMMSNIHADAGSWNECERLRKLARSKGL 551 (694)
Q Consensus 485 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 551 (694)
...+|..+...++++|+++.|...+.++.+..+ ..+.....-+..+...|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999998663 2466777788999999999999999988877333
No 302
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.69 E-value=2.7 Score=37.48 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCC----chHHHHHHHHH
Q 005481 502 LELGREVGEILLRLDGDNPVNYVMMSNIHADAGS----WNECERLRKLA 546 (694)
Q Consensus 502 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 546 (694)
+++|+.-+++++.++|+...++.+++++|...|. ..+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4667777888889999999999999999988764 33444544444
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.57 E-value=5.2 Score=34.52 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=33.0
Q ss_pred cCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 499 HGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 499 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 566666666666666666666666666666666666666666666665544
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.49 E-value=4.8 Score=39.21 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 489 WQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 489 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
+..++.++...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344445555556666666666666666666666666666666666666666666665544
No 305
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.04 E-value=25 Score=36.14 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=51.5
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHcCCCC-CcchHHHHHhHHH-hcCCchHHHHHHHHHHh
Q 005481 485 SIAIWQTL---LSACRVHGDLELGREVGEILLRLDGD-NPVNYVMMSNIHA-DAGSWNECERLRKLARS 548 (694)
Q Consensus 485 ~~~~~~~l---l~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 548 (694)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||-.....++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445554 45678889999999999999999998 8888888888886 77888888888887654
No 306
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.75 E-value=81 Score=35.42 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHH
Q 005481 396 HGLAKEAVGLFRKMLLD-DVEPDGV--AYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDE 472 (694)
Q Consensus 396 ~g~~~~A~~~~~~m~~~-g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 472 (694)
..+.+.|..++.+.... ++.+... ....+.......+..+++...++.... -..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 34557777777766432 2333322 222232222222224556666655432 11233334444444447777777
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCChHHHHHHHHHHH
Q 005481 473 AKNLIESMPVK-PSIAIWQT-LLSACRVHGDLELGREVGEILL 513 (694)
Q Consensus 473 A~~~~~~~~~~-p~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~ 513 (694)
+...|..|+.. -+..-|.- +..+....|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777321 11222322 3345555777777877777763
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.64 E-value=39 Score=31.74 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=34.6
Q ss_pred HHHHHHHhc-CChHHHHHHHHhC-----CCCCCHHHHHHHHHH--H-HhcCChHHHHHHHHHHHcCCCCC
Q 005481 459 CIVDSLGRA-GRLDEAKNLIESM-----PVKPSIAIWQTLLSA--C-RVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 459 ~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~a--~-~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
.+...|-.- .+++.|+..++.. +.+.+...-..++.+ | ...+++.+|+.+|++.....-++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444445443 4566666666655 122233333444432 2 45588899999999887655444
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.54 E-value=17 Score=32.24 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHccCCCC-C---cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005481 160 KCGRINEAARMFDVMPAK-S---LITWNAMIAGYVLAGYSDKGLLLFRKMQEH 208 (694)
Q Consensus 160 ~~g~~~~A~~~f~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 208 (694)
..|.+++.....+.+..+ + ...-.+|.-+-.+.|++.+|.++|..+...
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 445555555555444332 1 122334444445566666666666665543
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.25 E-value=24 Score=30.61 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=36.7
Q ss_pred ccCcHHHHHHHHHHHhhccCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 005481 430 HSGLVEESQEYFSRLCNDKRMKPRIE-HYSCIVDSLGRAGRLDEAKNLIESMPVKP-SIAIWQTLLSACRV 498 (694)
Q Consensus 430 ~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~a~~~ 498 (694)
..++.+++..+++.|.- +.|+.. .-..-+-.+.+.|+++||..+|++....+ ....-..|+.-|..
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 36677777777777754 455422 22233445667777788877777774332 33333344444433
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.10 E-value=3.7 Score=32.33 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhcc
Q 005481 33 QLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKM 73 (694)
Q Consensus 33 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 73 (694)
+-.+.+....+.|++.+..+-+.++-+.+++..|.++|+.+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333444444555555555555555555555555555544
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.07 E-value=8.9 Score=34.82 Aligned_cols=94 Identities=16% Similarity=0.014 Sum_probs=61.9
Q ss_pred hHHHHHhhhhhhcCCHHHHHHHHccCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHH
Q 005481 353 SVSNSIVDMYLKCGLIDEATELFNEMPVKN------VVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVE---PDGVAYLA 423 (694)
Q Consensus 353 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---pd~~t~~~ 423 (694)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+....-.. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455678899999999999999999988542 335677888888899999988888776653222 22221111
Q ss_pred HHH--HHHccCcHHHHHHHHHHHhh
Q 005481 424 VLS--ACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 424 ll~--a~~~~g~~~~a~~~~~~m~~ 446 (694)
+.. ++...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 12345666666666655543
No 312
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.94 E-value=7.1 Score=38.03 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=72.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHccCCC-CCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 005481 143 GFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPA-KSL-----ITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFT 216 (694)
Q Consensus 143 g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 216 (694)
|.+....+...++..-....+++++...+-++.. ++. .+-.++++-+ -.-++++++.++..=.+.|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 5555566666777666667788888877766543 111 1112223322 23467799999988899999999999
Q ss_pred HHHHHHHHcccCCchHHHHHHHHHHHhCC
Q 005481 217 FTSTLKACGSLGSVGGGTQIHGFLITSGF 245 (694)
Q Consensus 217 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 245 (694)
+..+|..+.+.+++..|.++.-.++....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887776543
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.90 E-value=68 Score=33.90 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=97.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHH
Q 005481 180 ITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVD 259 (694)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~ 259 (694)
...-+++..+.++-...-...+-.+|...| -+...|..++..|... .-+.-..+++.+++..+ .++.....|++
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df---nDvv~~ReLa~ 140 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF---NDVVIGRELAD 140 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc---hhHHHHHHHHH
Confidence 345566667777777777777777777754 4666777777777766 45556667777777766 46666666777
Q ss_pred HHHHcCCHHHHHHHHhhcCCC------Ch---hhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCccCccchHHHHHHHhh
Q 005481 260 FYVKCGCLVEARRVFDLIEQK------SV---ISWSSLILGYAQEENLAEAMELFRQLRE-RSLQVDGFVLSSMMGVFAD 329 (694)
Q Consensus 260 ~y~~~g~~~~A~~~f~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~ 329 (694)
.|-+ ++...+...|..+..+ +. ..|.-++..- ..+.+..+.+..+++. .|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7766 6677777666654321 11 2465554421 2455556666665554 3333344455555566677
Q ss_pred hccHHHHHHHHHHHHhcC
Q 005481 330 FALVEQGKQIHAYAAKVP 347 (694)
Q Consensus 330 ~~~~~~a~~i~~~~~~~~ 347 (694)
..+++++.++...+.+..
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 777777777777666554
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.66 E-value=2.8 Score=25.50 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLL 411 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (694)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555566666666666666666555
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.31 E-value=13 Score=36.36 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=72.3
Q ss_pred cCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC-C--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005481 346 VPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV-K--------NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP 416 (694)
Q Consensus 346 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 416 (694)
.|......+...+++.-....+++++...+-+... | ...+|-.++ ..=++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 34555556666777777777888888888776652 2 223333332 2346779999999889999999
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 417 DGVAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 417 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
|..|+..+++.+.+.+++.+|.++.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999888777765
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.15 E-value=2.5 Score=29.35 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=25.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCcch
Q 005481 492 LLSACRVHGDLELGREVGEILLRLDGDNPVN 522 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 522 (694)
+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4457889999999999999999999997654
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.62 E-value=16 Score=30.94 Aligned_cols=61 Identities=15% Similarity=0.010 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhc---CChHHHHHHHHHHHc-CCCCC-cchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 488 IWQTLLSACRVH---GDLELGREVGEILLR-LDGDN-PVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 488 ~~~~ll~a~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
+--.+.+++... .+..+++.+++.+++ -.|.. ......|+-.+++.|+++.++++.+...+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444333 345566667777765 33422 23344556667777777777777776654
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.53 E-value=28 Score=37.35 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=99.4
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHH
Q 005481 364 KCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFS 442 (694)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 442 (694)
-.|+++.|..++..++++ .-+.++.-+...|..++|+++ .||.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 357777787777777632 334455666677777777654 33432 2322 246788888887765
Q ss_pred HHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcch
Q 005481 443 RLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVN 522 (694)
Q Consensus 443 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 522 (694)
+. .+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+-+.-..+.....+....|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 54 244568899999999999999999888753 36677777777888775555555555544443
Q ss_pred HHHHHhHHHhcCCchHHHHHHHHH
Q 005481 523 YVMMSNIHADAGSWNECERLRKLA 546 (694)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~m 546 (694)
.--.+|...|+++++.+++..-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 2234677889999998887643
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.46 E-value=3.3 Score=24.05 Aligned_cols=31 Identities=29% Similarity=0.173 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 488 IWQTLLSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 488 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
.|..+...+...|+++.|...+++.++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666667777777777777666654
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.47 E-value=6.7 Score=31.27 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=14.0
Q ss_pred CCCCCChhHHHHHHHHhhcCCChHHHHHHHHHH
Q 005481 6 FSLVSERQRLADSLRCCSKNLLLDYGVQLHGAL 38 (694)
Q Consensus 6 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 38 (694)
+++-|++....+.|++|.+.+++..|.++++.+
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444444444555554445554444444443
No 321
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.07 E-value=61 Score=31.57 Aligned_cols=158 Identities=15% Similarity=0.071 Sum_probs=75.3
Q ss_pred hcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHH----HHHHCCCCCChhhHHHHHHHHcccCCc-----
Q 005481 160 KCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFR----KMQEHGEIPDEFTFTSTLKACGSLGSV----- 230 (694)
Q Consensus 160 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~ll~a~~~~~~~----- 230 (694)
+.+++++|.+++.. -...+.+.|+...|-++-. -..+.+.++|......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34556666665422 2233455555544444332 233345556665555555544433221
Q ss_pred hHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 005481 231 GGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRE 310 (694)
Q Consensus 231 ~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (694)
.-..+...+. +.+-.+..++.....+...|.+.|++.+|+..|-.-.+++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 1123333334 445444578888999999999999999999988665544444443344333333433333
Q ss_pred cCCccCccchHHHHHHHhhhccHHHHHHHHHHHH
Q 005481 311 RSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAA 344 (694)
Q Consensus 311 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 344 (694)
|.+.-..++ -+...+++..|...+....
T Consensus 141 -----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 141 -----DLFIARAVL-QYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -----HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred -----hHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 212222222 2444566676666655443
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.92 E-value=3.1 Score=25.73 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=13.2
Q ss_pred cchhhHHHHHHHHHHcCCHHHHH
Q 005481 249 VKTVIAGSLVDFYVKCGCLVEAR 271 (694)
Q Consensus 249 ~~~~~~~~li~~y~~~g~~~~A~ 271 (694)
.+..+++.|...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555666666666655553
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.82 E-value=29 Score=27.68 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=45.5
Q ss_pred hhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005481 360 DMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLA 423 (694)
Q Consensus 360 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 423 (694)
..+...|++++|..+.+....||...|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34567899999999999998899999987755 46677777777777777766 455555543
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.75 E-value=1.6 Score=38.01 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHH
Q 005481 17 DSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKA 96 (694)
Q Consensus 17 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 96 (694)
.+++.+.+.+.+....+.+..+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777788888888888888877667789999999999999888888888874333 445667778888888888
Q ss_pred HHHHHHHhhh
Q 005481 97 CLSLFCQMGS 106 (694)
Q Consensus 97 A~~~~~~m~~ 106 (694)
|.-++..+..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888877643
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.33 E-value=14 Score=38.18 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=81.6
Q ss_pred hcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHH
Q 005481 395 KHGLAKEAV-GLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEA 473 (694)
Q Consensus 395 ~~g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 473 (694)
..|+...|- ++|.-+....-.|+.+-+.+.+ ..+.|.++.+.+.+....+ -+.....+..+++..+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 346655543 4555555555567776665555 5788999998888877654 2445567788888889999999999
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 474 KNLIESM---PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 474 ~~~~~~~---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
..+-+.| .++ ++.+...-...-...|-++++...+++++.+.|.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 9888877 222 3333333333446667788999999999988874
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.04 E-value=2.9 Score=23.90 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.4
Q ss_pred chHHHHHhHHHhcCCchHHHHHHH
Q 005481 521 VNYVMMSNIHADAGSWNECERLRK 544 (694)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~ 544 (694)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888887764
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.85 E-value=52 Score=30.05 Aligned_cols=90 Identities=12% Similarity=-0.034 Sum_probs=54.1
Q ss_pred HHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhh--HHHHHHHHHhCCCHHH
Q 005481 223 ACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVIS--WSSLILGYAQEENLAE 300 (694)
Q Consensus 223 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~ 300 (694)
.+...++++.|...+.......-+......+--.|.......|.+|+|.+.++....++-.+ ...-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34555666666666665553322111222333345566777888888888888777664322 2223456778888888
Q ss_pred HHHHHHHHHhcC
Q 005481 301 AMELFRQLRERS 312 (694)
Q Consensus 301 A~~~~~~m~~~g 312 (694)
|..-|.+.+..+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 888888877764
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.74 E-value=3 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=14.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 493 LSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 493 l~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
..++...|+.++|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34445555555555555555555554
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.69 E-value=11 Score=26.22 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=35.3
Q ss_pred HHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHhcC
Q 005481 523 YVMMSNIHADAGSWNECERLRKLARSKGLKKVAGRSWVEVDKEIHFFYGGDDTHPLTEKIHQVLMEMEKRMKEELG 598 (694)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~g 598 (694)
...++-++.+.|++++|.+..+.+.+. +|...+.......+.++|+ +.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~-kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQ-KDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHh-ccC
Confidence 456788899999999999999998863 4555566555566667777 666
No 330
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.40 E-value=65 Score=30.90 Aligned_cols=238 Identities=16% Similarity=0.199 Sum_probs=133.5
Q ss_pred CHHHHHHHHhhcCC----C---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHh---cCC--ccCccchHHHHHHHhhhccH
Q 005481 266 CLVEARRVFDLIEQ----K---SVISWSSLILGYAQEENLAEAMELFRQLRE---RSL--QVDGFVLSSMMGVFADFALV 333 (694)
Q Consensus 266 ~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~pd~~t~~~ll~~~~~~~~~ 333 (694)
..++|+.-|..+.+ + ..-+.-.||..+.+.|++++.++.|++|+. ..+ .-...+.++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45556655555432 1 123344567777788888888888777753 111 12334566777766666665
Q ss_pred HHHHHHHHHHHhc-----CCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC--------C-------ChhhHHHHHHHH
Q 005481 334 EQGKQIHAYAAKV-----PSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV--------K-------NVVTWTVIITGY 393 (694)
Q Consensus 334 ~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~ 393 (694)
+.-..+++--.+. +-..-..+-+.|...|...|.+.+-.+++.++.+ . -...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555555432211 1111222334567777778888887777776641 1 124577778888
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-----ccCcHHHHHHHHHHHhhccCC--CCCh---hHHHHHHH
Q 005481 394 GKHGLAKEAVGLFRKMLLDD-VEPDGVAYLAVLSACS-----HSGLVEESQEYFSRLCNDKRM--KPRI---EHYSCIVD 462 (694)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~~---~~~~~li~ 462 (694)
....+-..-..+|++.+.-. --|-+ ....+++-|. +.|.+++|-.-|=++.+.+.- .|.. --|-.|.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776422 22333 3445666664 457777776444344332422 2332 23666777
Q ss_pred HHHhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005481 463 SLGRAGR----LDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVG 509 (694)
Q Consensus 463 ~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 509 (694)
++.+.|- -.||.- ....|.......|+.+|..+ +..+-++++
T Consensus 281 MLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 8877762 112210 12335566788899988654 444433333
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.33 E-value=1.2e+02 Score=33.95 Aligned_cols=163 Identities=11% Similarity=0.016 Sum_probs=74.8
Q ss_pred cccHHHHHHHHH-hCCChHHHHHHHHHhhhCCCCCCcee-----HHHHHHHhcccCChHHHHHHHHHHHHhCCC----CC
Q 005481 78 VVSWTALMCGFL-QNGNAKACLSLFCQMGSSSVKPNEFT-----LSTNIKASGVLSSVENGMQIHGMCMKSGFE----WN 147 (694)
Q Consensus 78 ~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~ 147 (694)
..++-.+...+. ...++++|...+.+.....-+++-.- -..+++.+.+.+... |....+..++.--. +-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 334555555554 45667777777766543221221110 112233333333333 66666665554211 11
Q ss_pred hhHHHHH-HHHHHhcCChHHHHHHHccCCC-------CCcccHHHHHHHH--HhcCChhHHHHHHHHHHHCCC-------
Q 005481 148 PVVGNSI-IDMYSKCGRINEAARMFDVMPA-------KSLITWNAMIAGY--VLAGYSDKGLLLFRKMQEHGE------- 210 (694)
Q Consensus 148 ~~~~~~l-l~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~------- 210 (694)
...+.-+ +..+...++...|.+.++.+.. +-+...-.++.+. .+.+.++++++.++++.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2222222 2223233677777777765532 1122233333332 334556677777766633221
Q ss_pred --CCChhhHHHHHHHHc--ccCCchHHHHHHHHHH
Q 005481 211 --IPDEFTFTSTLKACG--SLGSVGGGTQIHGFLI 241 (694)
Q Consensus 211 --~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~ 241 (694)
.|-..+|..++..++ ..|+++.+.+.+..+.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223445555655544 4455556655544443
No 332
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.15 E-value=95 Score=32.67 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=9.3
Q ss_pred HHHHhcCChHHHHHHHcc
Q 005481 156 DMYSKCGRINEAARMFDV 173 (694)
Q Consensus 156 ~~y~~~g~~~~A~~~f~~ 173 (694)
...++.|+.+.+..+++.
T Consensus 73 ~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 73 HDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 334455566555555543
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.74 E-value=18 Score=28.69 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHH
Q 005481 398 LAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVD 462 (694)
Q Consensus 398 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 462 (694)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+..+.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4446666677777777889999999999999999999999999998875332 24445665543
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.55 E-value=4 Score=24.84 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=25.2
Q ss_pred chHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 521 VNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.36 E-value=16 Score=29.22 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHH
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVD 462 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 462 (694)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666666677889999999999999999999999999998876444 33336766654
No 336
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.21 E-value=1.4 Score=43.20 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=51.2
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 468 GRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 468 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
|.+++|++.|... +..|. ...+.--.+++.+.+....|++-+..+++++|+....|-.-+.+....|.|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4455555555444 33332 223333344555666666677777777777777666666666666677777777777776
Q ss_pred HHhCCCccC
Q 005481 546 ARSKGLKKV 554 (694)
Q Consensus 546 m~~~g~~~~ 554 (694)
..+.+....
T Consensus 208 a~kld~dE~ 216 (377)
T KOG1308|consen 208 ACKLDYDEA 216 (377)
T ss_pred HHhccccHH
Confidence 666555433
No 337
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.08 E-value=2.3e+02 Score=36.43 Aligned_cols=129 Identities=11% Similarity=0.048 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHcc-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHccc
Q 005481 150 VGNSIIDMYSKCGRINEAARMFDV-MPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPD-EFTFTSTLKACGSL 227 (694)
Q Consensus 150 ~~~~ll~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 227 (694)
.+-.+...|+.-+++|....+... ...++ ...-|......|++..|...|+.+.+.+ |+ ..+++.+++..-..
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcc
Confidence 344445577777777777666652 32222 2334445566788888888888887654 44 55677777766666
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHH
Q 005481 228 GSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSL 288 (694)
Q Consensus 228 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 288 (694)
+.++...-..+.......+ .....++.=+.+--+.+++|....... +++..+|.+.
T Consensus 1497 ~~l~t~i~~~dg~~~~~se--~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINRSE--EVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred cchhHHHhhhcchhhccCH--HHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 6666655544443333221 111222222333356666666655554 4556666655
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.87 E-value=67 Score=30.27 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=35.7
Q ss_pred HHHhcCChHHHHHHHHhC---CCCCCHHHHHH---HHH--HHHhc-CChHHHHHHHHHHHcCCCCC
Q 005481 463 SLGRAGRLDEAKNLIESM---PVKPSIAIWQT---LLS--ACRVH-GDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~--a~~~~-g~~~~a~~~~~~~~~~~p~~ 519 (694)
.-+..+++.+|+++|++. ....+..-|.. ++. .|.-. .+.-.+...+++-.+++|.-
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 345677888899998876 22323333332 222 23323 67777888899999999954
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.51 E-value=5.9 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005481 384 VTWTVIITGYGKHGLAKEAVGLFRKMLL 411 (694)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (694)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 340
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.33 E-value=5.7 Score=25.41 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 005481 489 WQTLLSACRVHGDLELGREVGEILL 513 (694)
Q Consensus 489 ~~~ll~a~~~~g~~~~a~~~~~~~~ 513 (694)
++.|...|...|++++|+.++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444443
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.25 E-value=13 Score=34.00 Aligned_cols=74 Identities=20% Similarity=0.152 Sum_probs=50.6
Q ss_pred hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC----CcchHHHHHhHHHhcCCchHH
Q 005481 466 RAGRLDEAKNLIESMPVKP--SIAIWQTLLSACRVHGDLELGREVGEILLRLDGD----NPVNYVMMSNIHADAGSWNEC 539 (694)
Q Consensus 466 ~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a 539 (694)
+.|+ ++|.+.|-.+.-.| +....-.-+..|....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 56666666663222 2333444455566678889999999999876432 578888999999999998887
Q ss_pred H
Q 005481 540 E 540 (694)
Q Consensus 540 ~ 540 (694)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 342
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.86 E-value=1.7e+02 Score=34.52 Aligned_cols=254 Identities=7% Similarity=-0.094 Sum_probs=115.2
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCC
Q 005481 272 RVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLD 351 (694)
Q Consensus 272 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 351 (694)
.+...+.++|...--.-+..+.+.+. +++...+.+++. .+|...-...+.++...+........+..+.+. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 34444445555554445555555554 334444444443 223222223333333332111111222222222 34
Q ss_pred chHHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005481 352 TSVSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHS 431 (694)
Q Consensus 352 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 431 (694)
..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 45555555555543211 12233444456666555555666665544322 12222 234554445555555555
Q ss_pred CcHHH-HHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005481 432 GLVEE-SQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGE 510 (694)
Q Consensus 432 g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 510 (694)
+..+. +...+..+.+ .++...-...+.++++.|..+.+...+..+-..+|..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2344444443 356666777777777777665543434333234555555555666665554 34444444
Q ss_pred HHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 511 ILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 511 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
.+++ +|+ +..-...+.++.+.+.-..+...+....
T Consensus 845 ~~L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DPH-LDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4442 222 3333444444544322234555554444
No 343
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.85 E-value=1.2e+02 Score=32.02 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHccCCCCC----------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh---------hhHHHHHHHHc
Q 005481 165 NEAARMFDVMPAKS----------LITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDE---------FTFTSTLKACG 225 (694)
Q Consensus 165 ~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------~t~~~ll~a~~ 225 (694)
|+|+...++.++.| ..+...++-+-.-.|++.+|++-..+|.+.-..... ..-..+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHH--------HHHHHHh--C
Q 005481 226 SLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSS--------LILGYAQ--E 295 (694)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~--------li~~~~~--~ 295 (694)
..+.++.|+.-|..+.+.-...+.-......+.-.|.+.|+.++-.++.+.+..++..++++ ++.|+.. .
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHhcC-----CccCccchHHHHHHHhhhccHHHHHHHHHHHHhc-----CCCCCchHHHHHhhhhhhc
Q 005481 296 ENLAEAMELFRQLRERS-----LQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKV-----PSGLDTSVSNSIVDMYLKC 365 (694)
Q Consensus 296 g~~~~A~~~~~~m~~~g-----~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~~~ 365 (694)
+++.||...+++-.+.. .+...-....+-..+...|+..+++.+..-.... .+..-......+-+.|..+
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred CC--HHHHHHHHcc
Q 005481 366 GL--IDEATELFNE 377 (694)
Q Consensus 366 g~--~~~A~~~~~~ 377 (694)
|+ .+...+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.82 E-value=9.8 Score=35.13 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCc
Q 005481 458 SCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
+.-+..+.+.+++++|+...+.- .-+|. ...-..|+..++..|++++|..-++-+-++.|.+.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677788888888877654 44553 45566777788888888888888888888888654
No 345
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.29 E-value=75 Score=29.58 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChh-hHHHHHH--HHHhCCCHHHHHHHHHHHHh
Q 005481 250 KTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVI-SWSSLIL--GYAQEENLAEAMELFRQLRE 310 (694)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~ 310 (694)
-+.++|-|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++---|++.-|.+-|.+.-+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 4566777777777777777777777776654432 2222211 22345666666665555544
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.98 E-value=1.3e+02 Score=33.20 Aligned_cols=153 Identities=10% Similarity=0.020 Sum_probs=83.4
Q ss_pred HhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC-----cHHHHHHHHHHHhhccCCCCChhHHHHHH
Q 005481 394 GKHGLAKEAVGLFRKMLL-------DDVEPDGVAYLAVLSACSHSG-----LVEESQEYFSRLCNDKRMKPRIEHYSCIV 461 (694)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li 461 (694)
....+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++..... .| .|+....-...
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHH
Confidence 344566666666666655 44 2224445555555532 45567777776655 22 23333332222
Q ss_pred HHHHh-cCChHHHHHHHHhCCCC--CCHHHHHHHHHHHH--hcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhc-CC
Q 005481 462 DSLGR-AGRLDEAKNLIESMPVK--PSIAIWQTLLSACR--VHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADA-GS 535 (694)
Q Consensus 462 ~~~~~-~g~~~~A~~~~~~~~~~--p~~~~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~ 535 (694)
...+. -.+...|.++|...... ++...+.++.-.+. ...+.+.|...++++-+.++ +.+...++..+.-. ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcccc
Confidence 22222 23456777777776322 22333332222221 33477888888888888873 44455555544322 88
Q ss_pred chHHHHHHHHHHhCCCcc
Q 005481 536 WNECERLRKLARSKGLKK 553 (694)
Q Consensus 536 ~~~a~~~~~~m~~~g~~~ 553 (694)
++.+.-....+.+.|.+.
T Consensus 413 ~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYEV 430 (552)
T ss_pred ccHHHHHHHHHHHhhhhH
Confidence 888888887777766543
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.86 E-value=11 Score=36.35 Aligned_cols=59 Identities=12% Similarity=-0.047 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 490 QTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 490 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
+.....|...|.+.+|.++.++++.++|-+...+..|.+.|+..|+--+|.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34445788999999999999999999999999999999999999998888887777753
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.77 E-value=56 Score=34.04 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=94.8
Q ss_pred ccCcHHHHH-HHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 005481 430 HSGLVEESQ-EYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLLSACRVHGDLELGR 506 (694)
Q Consensus 430 ~~g~~~~a~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~ 506 (694)
..|++-.|- +++..+.. +.-.|+... .........|.+|.|.+.+... .+.....+...++......|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~-~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-QQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHh-CCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 456665554 45555544 544555433 3334466789999999998876 23345667788888888999999999
Q ss_pred HHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCC
Q 005481 507 EVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVAGRSWVEVDKEIHFFYGGD 573 (694)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~ 573 (694)
...+-++.-+-.+++....-+..--..|-++++...++....... +....|+.+-.....|..|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~--~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP--ETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC--hhcccceeeeccceeccCcc
Confidence 999999988777776655555555667889999999998876443 33345665544445565443
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.43 E-value=4 Score=24.50 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=24.7
Q ss_pred hHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 522 NYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998764
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.33 E-value=6.2 Score=40.88 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=54.3
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHH
Q 005481 464 LGRAGRLDEAKNLIESM-PVKPSIAIWQTLL-SACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECER 541 (694)
Q Consensus 464 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 541 (694)
+...+.++.|..++.++ ...|+-..|-+.- .++.+.+++..|..=+.++++++|.....|+.-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 33445556666666555 4556544433332 466677777777777777777777777777777777777777777777
Q ss_pred HHHHHH
Q 005481 542 LRKLAR 547 (694)
Q Consensus 542 ~~~~m~ 547 (694)
.++...
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 776544
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.86 E-value=43 Score=26.79 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=41.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 005481 257 LVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERS 312 (694)
Q Consensus 257 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 312 (694)
-+..+...|++++|..+.+.+..||+..|-+|-.. +.|..+++..-+.+|...|
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 34456778999999999999988999999887653 5677777777777776665
No 352
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=72.75 E-value=1.1e+02 Score=30.60 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c----CcHHHHHHHHHHHhhccCCCC--ChhHHHHH
Q 005481 399 AKEAVGLFRKMLLDDVEPDGVAYLAVLSACSH--S----GLVEESQEYFSRLCNDKRMKP--RIEHYSCI 460 (694)
Q Consensus 399 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~--~----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l 460 (694)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|++++.+-- +...+..|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL 147 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHH
Confidence 45667888999999999888777664433322 2 235678899999998765432 33344444
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.54 E-value=26 Score=32.19 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCC-CcchhhHHHHHHHHHHcCCHHHHH
Q 005481 196 DKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPY-SVKTVIAGSLVDFYVKCGCLVEAR 271 (694)
Q Consensus 196 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~~~li~~y~~~g~~~~A~ 271 (694)
+.|++.|-.+...+..-++.. -..+..+-...+.+++.+++-.+.+...+. +.++.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~el-q~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAEL-QYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHH-HHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 344555555544443322222 222222223444555555554444432221 256666777777777777766653
No 354
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.62 E-value=22 Score=33.53 Aligned_cols=87 Identities=18% Similarity=0.107 Sum_probs=62.5
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCCHHHHHH-----------HHHHHHhcCChHHHHHHHHHHHcCCCCCcc
Q 005481 462 DSLGRAGRLDEAKNLIESM---------PVKPSIAIWQT-----------LLSACRVHGDLELGREVGEILLRLDGDNPV 521 (694)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~-----------ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 521 (694)
+-+.+.|++.||..-+.++ ..+|...-|-- +-..+...|++-++++.....+..+|++..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455566666665555443 34454444422 223345668999999999999999999999
Q ss_pred hHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 522 NYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
+|..-+.+.+..=+..+|..-+....+
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999888888888888887765
No 355
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.28 E-value=12 Score=35.10 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=42.9
Q ss_pred hHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 470 LDEAKNLIESM-PVKPSIAI-WQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 470 ~~~A~~~~~~~-~~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
+.+|..-+.+. .+.|...+ |..=+-.+.+..+++.+.+--++++++.|+.......++........+++|...+++..
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34444433332 34444433 33333344555666666666666666666666666666666666666666666666553
No 356
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.19 E-value=20 Score=33.74 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCChH-------HHHHHHHHHHcCC--CC----CcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 487 AIWQTLLSACRVHGDLE-------LGREVGEILLRLD--GD----NPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 487 ~~~~~ll~a~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
.++.-+.+.|+..|+.+ .|...|+++++.+ |. ......+++.++.+.|+.++|.+.+..+...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555666677777754 4445555555433 22 2356678899999999999999999998754
No 357
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.58 E-value=39 Score=30.91 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 457 YSCIVDSLGRAGRLDEAKNLIESM-PVKPSI-AIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
|..-..++.+.+.++.|++-..+. .+.|.. ....--..+|-+...++.|+.-|+++++.+|..
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 333444555666666666555444 333321 111111235677788999999999999999964
No 358
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=50 Score=35.53 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=62.8
Q ss_pred HHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHH
Q 005481 158 YSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIH 237 (694)
Q Consensus 158 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 237 (694)
..+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34667777777765443 3566788888888888888888888877654 456666666667666555555
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhh
Q 005481 238 GFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDL 276 (694)
Q Consensus 238 ~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 276 (694)
....+.|.. |.--..|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~--------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKN--------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhccc--------chHHHHHHHcCCHHHHHHHHHh
Confidence 555555542 1222345555666666655543
No 359
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=69.22 E-value=57 Score=31.90 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc-c-CcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005481 399 AKEAVGLFRKMLL-DDVEPDGVAYLAVLSACSH-S-GLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKN 475 (694)
Q Consensus 399 ~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~-~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 475 (694)
..+|+.+|+.... +.+--|......+++.... . .....--++.+.+...++-.++..+..+.+..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666652211 1233344455555554433 1 12223334444444555566777777777788888888877777
Q ss_pred HHHhC--C--CCCCHHHHHHHHHHHHhcCChHHHH
Q 005481 476 LIESM--P--VKPSIAIWQTLLSACRVHGDLELGR 506 (694)
Q Consensus 476 ~~~~~--~--~~p~~~~~~~ll~a~~~~g~~~~a~ 506 (694)
+++.. . ..-|...|..++......|+.....
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 77765 1 2235666777777777776655433
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.39 E-value=1.9e+02 Score=31.85 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=85.8
Q ss_pred CHHHHHHHHccCCCC-ChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 005481 367 LIDEATELFNEMPVK-NVVTWTVIITGYG----KHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYF 441 (694)
Q Consensus 367 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 441 (694)
+...|.++|...... ...+.-.+...|. ...+...|..++.+..+.| .|-..--...+..+.. +.++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 455666666655422 2222222222221 2345667777777777766 3333222333333333 5555555444
Q ss_pred HHHhhccCCCCChhHHHHHHHHH-----Hh--cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHH
Q 005481 442 SRLCNDKRMKPRIEHYSCIVDSL-----GR--AGRLDEAKNLIESMPVKPSIAIWQTLLSACRVH----GDLELGREVGE 510 (694)
Q Consensus 442 ~~m~~~~~~~p~~~~~~~li~~~-----~~--~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~----g~~~~a~~~~~ 510 (694)
..+.. .+.+--...-..+.+.. .+ ..+.+.+..++.+...+-+......|...|..- .+.+.|...+.
T Consensus 421 ~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 421 LYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred HHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 44433 22211111101111111 11 224555666666664444555555555544332 35677777777
Q ss_pred HHHcCCCCCcchHHHHHhHHHhc-C--CchHHHHHHHHHHhC
Q 005481 511 ILLRLDGDNPVNYVMMSNIHADA-G--SWNECERLRKLARSK 549 (694)
Q Consensus 511 ~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~ 549 (694)
++-+.. +.....++.++..- | ++..|.++++...+.
T Consensus 500 ~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 500 RASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 766555 55666777776532 1 267788877776553
No 361
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=68.37 E-value=89 Score=27.96 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005481 137 GMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMF 171 (694)
Q Consensus 137 ~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f 171 (694)
.-+.+.+++|+...+..+++.+.+.|++..-..++
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444556666666666666666665555444443
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.02 E-value=17 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc
Q 005481 400 KEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHS 431 (694)
Q Consensus 400 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~ 431 (694)
++|+.-|++.+. +.|+. .++..+..++...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 445555555555 66776 5677777776554
No 363
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.35 E-value=55 Score=28.43 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHhCCCCCh--hhHHHHHHHHHhcCChHHHHHHHhccCC---------CCcccHHHHHHHHHhCCC-hHHHHHHHHHhhh
Q 005481 39 VKMGFSFDL--MLNNDLIDMYAKCGEMNGACAVFDKMLE---------RNVVSWTALMCGFLQNGN-AKACLSLFCQMGS 106 (694)
Q Consensus 39 ~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 106 (694)
.+.+..+++ ...|++++-.+..+++.....+++.+.. .+-.+|++++.+.++..- ---+..+|..|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 4567778777777888887777777632 345578888888765554 3346777788877
Q ss_pred CCCCCCceeHHHHHHHhccc
Q 005481 107 SSVKPNEFTLSTNIKASGVL 126 (694)
Q Consensus 107 ~g~~p~~~t~~~ll~a~~~~ 126 (694)
.+.+++..-|..++++|.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 77777777788888777654
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.79 E-value=66 Score=30.87 Aligned_cols=200 Identities=14% Similarity=0.117 Sum_probs=116.3
Q ss_pred cCCCCCchHHHHHhhhh-hhcCCHHHHHHHHccCCC----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC
Q 005481 346 VPSGLDTSVSNSIVDMY-LKCGLIDEATELFNEMPV----K---NVVTWTVIITGYGKHGLAKEAVGLFRKMLL---DDV 414 (694)
Q Consensus 346 ~~~~~~~~~~~~li~~y-~~~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~ 414 (694)
.+.+||+..-|..-..- .+...+++|..-|++..+ + .....-.||..+.+.|++++.++.|.+|+. ..+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34455554443322111 234477788888877652 2 223445678888889999999998888864 122
Q ss_pred CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHhhcc----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------
Q 005481 415 EP--DGVAYLAVLSACSHSGLVEESQEYFSRLCNDK----RMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMP------- 481 (694)
Q Consensus 415 ~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------- 481 (694)
.- ...+.+++++.-+...+.+--.++++.-.... +-..-..+-.-|...|...|.+.+-.++++++.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 22 23467777776666665555555544332211 111112233567777877777777777776651
Q ss_pred CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC--CcchHH----HHHhHHHhcCCchHHHHHHHH
Q 005481 482 VKPS-------IAIWQTLLSACRVHGDLELGREVGEILLRLDGD--NPVNYV----MMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 482 ~~p~-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~----~l~~~~~~~g~~~~a~~~~~~ 545 (694)
-..| ..+|..=+..|..+++-..-..++++++.+..- +|...- +=+.++.+.|+|++|..-|-+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHH
Confidence 0111 234555667777888888888899988866532 232221 224567788999988654433
No 365
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.14 E-value=2.8e+02 Score=32.86 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=23.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHH
Q 005481 44 SFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGF 88 (694)
Q Consensus 44 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 88 (694)
.+|+.+-..-+..+.+.+..+....+...+..+|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566666666677776666544333344444444433333333333
No 366
>PRK12798 chemotaxis protein; Reviewed
Probab=65.07 E-value=1.8e+02 Score=30.23 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHccCCC----CChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCcHH
Q 005481 365 CGLIDEATELFNEMPV----KNVVTWTVIITGYG-KHGLAKEAVGLFRKMLLDDVEPDGV----AYLAVLSACSHSGLVE 435 (694)
Q Consensus 365 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~ 435 (694)
.|+.++|.+.+..+.. +....+-+|+.+-. ...++.+|+++|+...- ..|... ...--+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999998873 34556777776544 46789999999999876 456543 3333444567889999
Q ss_pred HHHHHHHHHhhccCCCCChhHHHH-HHHHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005481 436 ESQEYFSRLCNDKRMKPRIEHYSC-IVDSLGR---AGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEI 511 (694)
Q Consensus 436 ~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 511 (694)
++..+-..-.+.+.-.|-...|.. ++.++.+ .-..+.-..++..|.-.-...+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 887766666555555554443332 2333333 334455555666663222356788888888899999999999999
Q ss_pred HHcCCCCCcchHHHHHhHHHhc-----CCchHHHHHHHHH
Q 005481 512 LLRLDGDNPVNYVMMSNIHADA-----GSWNECERLRKLA 546 (694)
Q Consensus 512 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m 546 (694)
++.+.+. ...-...+.+|... .+.+++.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9988643 23333444444432 3455555555433
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.94 E-value=1.6e+02 Score=30.90 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhh
Q 005481 235 QIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDL 276 (694)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 276 (694)
++.+.+.+.|..+........+.+...+..|+.+-+.-+++.
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 455555666655222222223344555566776666655554
No 368
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.85 E-value=1.1e+02 Score=27.56 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=79.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChh-HHHHH--HHHHHhcC
Q 005481 393 YGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIE-HYSCI--VDSLGRAG 468 (694)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 468 (694)
+++.+..++|+.-|..+.+.|...=.+ ...-........|+...|...|+++-++..+ |-.. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 456778888999998888876543221 2222333456778899999999988774332 2211 11111 23466788
Q ss_pred ChHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 005481 469 RLDEAKNLIESMPVK--PS-IAIWQTLLSACRVHGDLELGREVGEILLR 514 (694)
Q Consensus 469 ~~~~A~~~~~~~~~~--p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 514 (694)
.+++.....+-+..+ |- ...-..|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888777322 22 33456677778899999999999998876
No 369
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.34 E-value=1.9e+02 Score=30.20 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=37.4
Q ss_pred HHhhhhhhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005481 357 SIVDMYLKCGLIDEATELFNEMPVK---NVVTWTVIITGYGKHGLAKEAVGLFRKMLLDD 413 (694)
Q Consensus 357 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 413 (694)
.|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-+..+.+++..-..|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4666677777888888777776644 44567777777777776665555555554444
No 370
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=64.04 E-value=67 Score=26.68 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH-------cCCCCCcchHH----HHHhHHHhcCCchHHHHHHHHH
Q 005481 486 IAIWQTLLSACRVHGDLELGREVGEILL-------RLDGDNPVNYV----MMSNIHADAGSWNECERLRKLA 546 (694)
Q Consensus 486 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 546 (694)
...+..|-.++...|++++++...++++ +++.+.-..|. .-+.++...|+.++|.+.++..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3344455555556666655555444443 45555433333 3455677889999998888764
No 371
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.69 E-value=16 Score=28.73 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 507 EVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
..+++.++.+|+|...-..++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666677777777777777777777777777777766654
No 372
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.61 E-value=1.4e+02 Score=28.42 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=35.3
Q ss_pred HHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005481 424 VLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRV 498 (694)
Q Consensus 424 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~ 498 (694)
++.++...|+.+.|..+++.+.. .-.+.+....+... ..+|.+.||..+.+..+.+-....|..++..|..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44555556666666666665432 11122223333333 4446677777666665322123455566655543
No 373
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.16 E-value=12 Score=36.31 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=22.0
Q ss_pred hcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHH
Q 005481 498 VHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLR 543 (694)
Q Consensus 498 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (694)
+.|+.|+|..+|+.++.+.|+++.....++.......+.-+|-+++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 4455555555555555555555554444444444444444444333
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.97 E-value=1.2e+02 Score=32.71 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=39.2
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCC-CcchHHHHHhHHH-hcCCchHHHHHHHHHH
Q 005481 494 SACRVHGDLELGREVGEILLRLDGD-NPVNYVMMSNIHA-DAGSWNECERLRKLAR 547 (694)
Q Consensus 494 ~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 547 (694)
....+.|-+..|.+..+-+++++|. ||-....+++.|+ ++.+++--+++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455667788888888888888886 7777777777776 5666766666666653
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.60 E-value=76 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 005481 284 SWSSLILGYAQEENLAEAMELFRQLRE 310 (694)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (694)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999877
No 376
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.14 E-value=2.2e+02 Score=30.04 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhh
Q 005481 283 ISWSSLILGYAQ---EENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADF 330 (694)
Q Consensus 283 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 330 (694)
..+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++-..
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 344555555554 578999999999999999888766555555554333
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.04 E-value=1.1e+02 Score=31.67 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=65.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCcHHHHHHHHHHHhhccCC-CCChhHHHHHHHHHHh
Q 005481 392 GYGKHGLAKEAVGLFRKMLLDDVEPDGV--AYLAVLSACS--HSGLVEESQEYFSRLCNDKRM-KPRIEHYSCIVDSLGR 466 (694)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~ 466 (694)
.+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 344778999999999999986 555554 3444445553 356788899998887662110 0112233333333322
Q ss_pred cCChHHHHHHHHhCCCCCC-HHHHHHHHHHHH--hcCChHHHHHHHHHHHc
Q 005481 467 AGRLDEAKNLIESMPVKPS-IAIWQTLLSACR--VHGDLELGREVGEILLR 514 (694)
Q Consensus 467 ~g~~~~A~~~~~~~~~~p~-~~~~~~ll~a~~--~~g~~~~a~~~~~~~~~ 514 (694)
...+.........-..+|. ..+...+.+|-+ ..|+++.|...+-+++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2222222222211111121 223344445554 45888888876666655
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.12 E-value=93 Score=25.32 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005481 229 SVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQL 308 (694)
Q Consensus 229 ~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (694)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||.++|-+|-. .+.|..+++...+.++
T Consensus 21 cH~EA~tIa~wL~~~~~---~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE---MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT---THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 35566666666665543 234444444556778888888855555556678888877755 4677788888888777
Q ss_pred HhcC
Q 005481 309 RERS 312 (694)
Q Consensus 309 ~~~g 312 (694)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6654
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.74 E-value=1.1e+02 Score=29.03 Aligned_cols=117 Identities=13% Similarity=0.020 Sum_probs=69.5
Q ss_pred hhhhcCCHHHHHHHHccCC--CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCcHHH
Q 005481 361 MYLKCGLIDEATELFNEMP--VKNV-VTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVA-YLAVLSACSHSGLVEE 436 (694)
Q Consensus 361 ~y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~ 436 (694)
-|....+++.|...|.+.. .|++ .-|+.-+.++.+..+++.+..--.+.++ +.||.+- ...+..+......+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3555667778888777665 4555 3456677778888888888777777776 6777753 3344455566777888
Q ss_pred HHHHHHHHhh---ccCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005481 437 SQEYFSRLCN---DKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIES 479 (694)
Q Consensus 437 a~~~~~~m~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 479 (694)
|+..+.++.. ...+.|.......|-++--..=...++.++.++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8877777632 223334444444444433333333334444443
No 380
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.47 E-value=39 Score=35.17 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=28.2
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 479 SMPVKPS--IAIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 479 ~~~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
...++|. ..+..+-++.+.+++|+..|-.+.++++++.|..
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3355554 3346666777889999999999999999999863
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.03 E-value=24 Score=26.73 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=23.9
Q ss_pred ccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 005481 430 HSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNL 476 (694)
Q Consensus 430 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 476 (694)
+....++|+..|....+...-.|+ -.++.+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665553222222 22455555566666666555544
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.02 E-value=17 Score=24.11 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHhHHHhcCCchHHHHHHHHHHhCC
Q 005481 524 VMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 550 (694)
..|+.+|...|+.+.|+++++.....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999887543
No 383
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.95 E-value=25 Score=37.45 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=70.4
Q ss_pred HccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHH
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-PV-KPSIAIWQTLLSACRVHGDLELGR 506 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~a~~~~g~~~~a~ 506 (694)
.-.|+...|...+..+......+.+ .....|.+.+.+.|...+|-.++.+. .+ .-.+.++-++.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4468888888888777552222222 23445667777778878888877654 22 223456777888888889999999
Q ss_pred HHHHHHHcCCCCCcchHHHHHhHHH
Q 005481 507 EVGEILLRLDGDNPVNYVMMSNIHA 531 (694)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~~l~~~~~ 531 (694)
+.++.+++++|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999988877666554433
No 384
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.86 E-value=86 Score=33.65 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=17.3
Q ss_pred HHhhhhhhcCCHHHHHHHHccCC
Q 005481 357 SIVDMYLKCGLIDEATELFNEMP 379 (694)
Q Consensus 357 ~li~~y~~~g~~~~A~~~~~~~~ 379 (694)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667778888888888877775
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.45 E-value=15 Score=21.65 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHcCCCCCcchHHHHHh
Q 005481 500 GDLELGREVGEILLRLDGDNPVNYVMMSN 528 (694)
Q Consensus 500 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 528 (694)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877776665543
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.35 E-value=3.1e+02 Score=30.86 Aligned_cols=242 Identities=12% Similarity=0.036 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHhc-CCccCcc--chHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHH
Q 005481 295 EENLAEAMELFRQLRER-SLQVDGF--VLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEA 371 (694)
Q Consensus 295 ~g~~~~A~~~~~~m~~~-g~~pd~~--t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 371 (694)
..+.+.|..++...... +..+... ....+....+.....+.+.+.+....... .+..+...-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 45567788888776443 2222221 11122111111111334444444332222 2334444445555578888888
Q ss_pred HHHHccCCC--CChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhcc
Q 005481 372 TELFNEMPV--KNVVTWTV-IITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDK 448 (694)
Q Consensus 372 ~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 448 (694)
...+..|+. .+...|.- +..++...|+.++|...|+++.. . .+|-.++.+ .+.|..-. + . .
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~~~~----~----~-~ 395 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGEEYP----L----K-I 395 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCCCCC----C----C-C
Confidence 888888763 12112221 44555567888888888888643 1 234444432 12221100 0 0 0
Q ss_pred CCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC---CCC
Q 005481 449 RMKPRI------EHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLD---GDN 519 (694)
Q Consensus 449 ~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---p~~ 519 (694)
...|.. .---.-+..+...|+..+|...+..+....+......+...-...|..+.+.....+....+ -.-
T Consensus 396 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf 475 (644)
T PRK11619 396 DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF 475 (644)
T ss_pred CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC
Confidence 000000 00112345677789999999888776323455555555565678888888888776543211 112
Q ss_pred cchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccC
Q 005481 520 PVNYVMMSNIHADAGSWNECERLRKLARSKGLKKV 554 (694)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 554 (694)
|..|......+++.-..+.+.-.--...+.++.+.
T Consensus 476 p~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 476 PLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 34566666666666666665533333335555433
No 387
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.82 E-value=2.6e+02 Score=29.76 Aligned_cols=433 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHHHHH-hCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCccc---HHHHHH
Q 005481 11 ERQRLADSLRCCSKNLLLDYGVQLHGALVK-MGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVS---WTALMC 86 (694)
Q Consensus 11 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~ 86 (694)
|+..|..-+.-|-+.+.......++..|+. ++..||..++.+.=..=.... ++.|+.+|.+-.+.|+.+ |-...+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHHhhcCCCChHHHHHHHH
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----
Q 005481 87 GFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMYSKC----- 161 (694)
Q Consensus 87 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~y~~~----- 161 (694)
. ....+-.+..+=...|...+..+-..--.-..........-.+...+...+ .+..-....+.-..+.
T Consensus 183 m-----EL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e--~~~~~~~d~~kel~k~i~d~~ 255 (568)
T KOG2396|consen 183 M-----ELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE--LSVAEKFDFLKELQKNIIDDL 255 (568)
T ss_pred H-----HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc--hHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------CChHHHHHHHccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchH
Q 005481 162 ---------GRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGG 232 (694)
Q Consensus 162 ---------g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 232 (694)
-..+-|.+.++-...-+......+-.++--.-+.+....+|++..+ ..|+...+...|..|-..-....
T Consensus 256 ~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r 333 (568)
T KOG2396|consen 256 QSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLR 333 (568)
T ss_pred hccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhh
Q ss_pred H------HHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHh-hcCCCChhhHHHHHHHHHhC--CCHHHHHH
Q 005481 233 G------TQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFD-LIEQKSVISWSSLILGYAQE--ENLAEAME 303 (694)
Q Consensus 233 a------~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~--g~~~~A~~ 303 (694)
+ ..+++...+.+.........|..+.-++.+.....++-..+. +.-..+...|-.-+...... .---.-.+
T Consensus 334 ~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~ 413 (568)
T KOG2396|consen 334 GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEE 413 (568)
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHH
Q ss_pred HHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCCCh
Q 005481 304 LFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVKNV 383 (694)
Q Consensus 304 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 383 (694)
+|...+..-..+-...+++.. -...-+...-..+.....+.+.......-+.+++.+.+.|-..+|..+|.....-.+
T Consensus 414 l~n~~r~~~~s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp 491 (568)
T KOG2396|consen 414 LFNHLRKQVCSELLISWASAS--EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPP 491 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHh--hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCC
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Q 005481 384 VTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDS 463 (694)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 463 (694)
.+ +.+|++|++ +..+..+.+ +.-++.+|+.|...+| .++..|-..+..
T Consensus 492 ~s-----------------l~l~r~miq--~e~~~~sc~-----------l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 492 FS-----------------LDLFRKMIQ--FEKEQESCN-----------LANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred cc-----------------HHHHHHHHH--HHhhHhhcC-----------chHHHHHHHHHHHHhC--CChHHHHHHHHh
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHH
Q 005481 464 LGRAGRLDEAKNLIESM--PVKPSIA 487 (694)
Q Consensus 464 ~~~~g~~~~A~~~~~~~--~~~p~~~ 487 (694)
=...|+.+.+-.++.++ .++|...
T Consensus 540 e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred hccCCCcccccHHHHHHHHhhChhhh
No 388
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.55 E-value=1.9e+02 Score=27.69 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=81.8
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHH---HHHHHHHHH
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDV--EPDGV---AYLAVLSAC 428 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~---t~~~ll~a~ 428 (694)
.++.-..+|..+|..+.|-..+++.. -...+-++++|+++|++...-=. .-+.. -+..+-..+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 45556678888888887776665532 12234567777777776554100 01111 233333445
Q ss_pred HccCcHHHHHHHHHHHhhc---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC---C--CC-CCHHHHHHHHHHHHh
Q 005481 429 SHSGLVEESQEYFSRLCND---KRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM---P--VK-PSIAIWQTLLSACRV 498 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~--~~-p~~~~~~~ll~a~~~ 498 (694)
.+...+++|-..|.+-..- ..--|+ -..|-..|-.|.-..++..|...++.- | .. -|..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 5566666665555433110 001122 123555566667778899999999884 2 11 2466788888876 5
Q ss_pred cCChHHHHHHHH
Q 005481 499 HGDLELGREVGE 510 (694)
Q Consensus 499 ~g~~~~a~~~~~ 510 (694)
.|+.|++..++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 677777766643
No 389
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.30 E-value=1.1e+02 Score=24.93 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHh
Q 005481 25 NLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQM 104 (694)
Q Consensus 25 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 104 (694)
.-..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. -+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3467888899998888763 333444444556778899999966656667789998877755 4678888888888877
Q ss_pred hhCC
Q 005481 105 GSSS 108 (694)
Q Consensus 105 ~~~g 108 (694)
-.+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6654
No 390
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=68 Score=31.91 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhH
Q 005481 456 HYSCIVDSLGRAGRLDEAKNLIESM----PVKPS--IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNI 529 (694)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 529 (694)
+|--=.+-|.+..++..|...|.+- .-.|| .+.|+.=..+-...||+..++.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456677888888888888765 12333 45566666666677999999999999999999998888888888
Q ss_pred HHhcCCchHHHHHHHH
Q 005481 530 HADAGSWNECERLRKL 545 (694)
Q Consensus 530 ~~~~g~~~~a~~~~~~ 545 (694)
+....++++|....+.
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888886666555443
No 391
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.22 E-value=1.1e+02 Score=30.44 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChh--HHHHHHHH
Q 005481 389 IITGYGKHGLAKEAVGLFRKMLLDDVEPDG---VAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIE--HYSCIVDS 463 (694)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~ 463 (694)
+..+-.+.|+..+|.+.|+.+.+. .|-. .....|+.+|.....+.+...++.+--. -. .|... .|++ +
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd-is-lPkSA~icYTa---A 353 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD-IS-LPKSAAICYTA---A 353 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc-CcchHHHHHHH---H
Confidence 444455678888888888877663 2311 1234566677666666655555544322 11 12211 1221 1
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHH
Q 005481 464 LGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYV 524 (694)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 524 (694)
+. ++..+-++ +.||..+-.-|-.+ -..|.++..++.+.+|.-|....
T Consensus 354 LL------K~RAVa~k--Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 354 LL------KTRAVSEK--FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HH------HHHHHHhh--cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHH
Confidence 11 12222222 24555443332222 13467788888899987654433
No 392
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=55.17 E-value=2.5e+02 Score=28.80 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=80.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHcC---CCCC----
Q 005481 459 CIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTL------------LSACRVHGDLELGREVGEILLRL---DGDN---- 519 (694)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------l~a~~~~g~~~~a~~~~~~~~~~---~p~~---- 519 (694)
.|...+-.+|+.++|.+++.+.+++ ||+++ +..|...+|+-.|.-+.+++... +|+-
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4556677899999999999987543 33322 45678889999998888877542 2321
Q ss_pred cchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeC
Q 005481 520 PVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVAGRSWVEVDKEIHFFYGG 572 (694)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~ 572 (694)
...|..+..+..+.+.+=++-+.++.+-+.|..+....-|+.+-..+-.|+.-
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 25688888999999999999999999988776666555677765555566654
No 393
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.57 E-value=1.9e+02 Score=27.49 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHccCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 005481 365 CGLIDEATELFNEMPV-KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSR 443 (694)
Q Consensus 365 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 443 (694)
.+++++|.+.+-.-.. ++-. .-++.++...|+.+.|+.+++.+.-..-.+ .....++.+ ...+.+.+|..+-+.
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred hHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 3666777766644321 1111 236777777788888888877654322222 222333333 445788888776665
Q ss_pred HhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 005481 444 LCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIA 487 (694)
Q Consensus 444 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 487 (694)
.... -....+..++..+.....-....+.+-.+|+.+...
T Consensus 166 ~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 166 YPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred Cchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 5331 113456666666554443233344444556655443
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.43 E-value=44 Score=28.91 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=45.4
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchH
Q 005481 470 LDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNE 538 (694)
Q Consensus 470 ~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 538 (694)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|..+-...+++|...|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356777777774 223333444556778999999999999999999999888888888877665433
No 395
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.26 E-value=20 Score=33.44 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=41.8
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 463 SLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
+....|+.+.|.+++.+. ..-| ....|--+...--+.|+.+.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345567777777777766 3334 35668777777788888888888888888888865
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.98 E-value=31 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 005481 389 IITGYGKHGLAKEAVGLFRKMLLDD 413 (694)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g 413 (694)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666543
No 397
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.95 E-value=81 Score=24.57 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHH
Q 005481 263 KCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEA 301 (694)
Q Consensus 263 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (694)
..|+.+.|+.+++.++ +....|...+.++...|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4467777777777777 7777777777777777665544
No 398
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.86 E-value=3.1e+02 Score=29.36 Aligned_cols=162 Identities=11% Similarity=0.114 Sum_probs=84.5
Q ss_pred CchHHHHHhhhhhhcCCHHHHHHHHccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005481 351 DTSVSNSIVDMYLKCGLIDEATELFNEMP--VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSAC 428 (694)
Q Consensus 351 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 428 (694)
|....-++++.++..-...-.+.+-.+|. ..+-..+..++.+|.++ ..++-..+++++.+. .-|.+.+.--+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 34444455666666555555555555554 23455666677777766 455666677766663 23343333333333
Q ss_pred HccCcHHHHHHHHHHHhhccCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMKPR------IEHYSCIVDSLGRAGRLDEAKNLIESM----PVKPSIAIWQTLLSACRV 498 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~a~~~ 498 (694)
...++.+.+..+|..+... +-|. .+.|.-|+...+ .+.+.-+.+..+. +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3346666666666666542 2231 224444443322 2333344444333 222223334444445566
Q ss_pred cCChHHHHHHHHHHHcCCCCC
Q 005481 499 HGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 499 ~g~~~~a~~~~~~~~~~~p~~ 519 (694)
..|+++|+++...+++.+..|
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 677777777777777665544
No 399
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.59 E-value=2.5e+02 Score=32.50 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCccc-----HHHHHH---HHHhCCChHHHHHHHHHhhh
Q 005481 51 NDLIDMYAKCGEMNGACAVFDKMLERNVVS-----WTALMC---GFLQNGNAKACLSLFCQMGS 106 (694)
Q Consensus 51 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~---~~~~~g~~~~A~~~~~~m~~ 106 (694)
..-+..+....++++|..+-+....|+... +..+.. -+..+|++++|++.|.++..
T Consensus 311 ~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 311 EKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 333444445555666666666555444321 222222 13456677777777777654
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.58 E-value=88 Score=24.36 Aligned_cols=66 Identities=8% Similarity=0.116 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHH
Q 005481 31 GVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACL 98 (694)
Q Consensus 31 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 98 (694)
+..+++.+.+.|+- +......+-.+-...|+.+.|+++++.++ +....+...++++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45677777777742 22223333332235688888888888888 77778888888888877655543
No 401
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=52.17 E-value=3.5e+02 Score=29.50 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhccCC--CCcc-cHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhc
Q 005481 48 MLNNDLIDMYAKCGEMNGACAVFDKMLE--RNVV-SWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASG 124 (694)
Q Consensus 48 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 124 (694)
..|+.||.---....++.++.+++.+.. |... -|-....-=.+.|..+.+.++|++-.+ |++.+...|...+.-+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence 3344444333333334445555555432 3322 233333333445555566666655544 23334444444443322
Q ss_pred -ccCChHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHhcCChHHHHHHHccCCC
Q 005481 125 -VLSSVENGMQIHGMCMKS-GFE-WNPVVGNSIIDMYSKCGRINEAARMFDVMPA 176 (694)
Q Consensus 125 -~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~ 176 (694)
..|+.+..+..|+.++.. |.. .....|...|..-..++++.....+++++.+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 335555555555555543 221 1233445555555555566666666655543
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.06 E-value=44 Score=27.98 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=17.1
Q ss_pred cCCCCCChhHHHHHHHHhhcCCChHHHHHHHHHH
Q 005481 5 SFSLVSERQRLADSLRCCSKNLLLDYGVQLHGAL 38 (694)
Q Consensus 5 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 38 (694)
++++-|++......|++|.+.+|+..|.++++-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444455555555555555555555555555443
No 403
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.76 E-value=48 Score=32.38 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=30.2
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHH
Q 005481 466 RAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYV 524 (694)
Q Consensus 466 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 524 (694)
+.|+.++|..+|+.+ ...|+ +.+..-+....-.+++.-+|-++|-+++.+.|.+..+.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 455555555555543 33333 222222333333445666666677777777766655444
No 404
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=51.71 E-value=39 Score=21.23 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHcCCCC
Q 005481 489 WQTLLSACRVHGDLELGREV--GEILLRLDGD 518 (694)
Q Consensus 489 ~~~ll~a~~~~g~~~~a~~~--~~~~~~~~p~ 518 (694)
|-.+...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44555566677777777777 3365555554
No 405
>PRK10941 hypothetical protein; Provisional
Probab=51.47 E-value=96 Score=30.35 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchH
Q 005481 458 SCIVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNY 523 (694)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 523 (694)
+.+-.+|.+.++++.|+...+.+ .+.|+ +.-|.--.-.|.+.|.+..|..-++..++.-|++|.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34556677777777777777776 44444 44466666667888888888888888888888776543
No 406
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.34 E-value=71 Score=35.34 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=22.0
Q ss_pred cccCCchhhhhhhhhccCceEEEecCCc
Q 005481 652 RVCGDCHEFIKGLSKILKLVFVVRDATR 679 (694)
Q Consensus 652 ~~c~~~h~~~k~~s~~~~~~i~~~d~~~ 679 (694)
..|..-|++.--.|+|-+-.+--||.|+
T Consensus 489 ~~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 489 QKLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhhcCceeeeeehhceecccccccccce
Confidence 4577788888888888888888888665
No 407
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.33 E-value=2.5e+02 Score=27.66 Aligned_cols=76 Identities=12% Similarity=-0.075 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcC-------------
Q 005481 472 EAKNLIESMPVKPSIAIWQTLLSACR----VHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAG------------- 534 (694)
Q Consensus 472 ~A~~~~~~~~~~p~~~~~~~ll~a~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 534 (694)
.|...+.++...-+......|...|. ...|.++|...++++-+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 46666655521213333333332221 22366777777777777665 34444455 444444
Q ss_pred --CchHHHHHHHHHHhCC
Q 005481 535 --SWNECERLRKLARSKG 550 (694)
Q Consensus 535 --~~~~a~~~~~~m~~~g 550 (694)
+...|...+......+
T Consensus 250 ~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 250 EEDKKQALEWLQKACELG 267 (292)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 5555555555554443
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.13 E-value=4.4e+02 Score=30.36 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=112.5
Q ss_pred HHcCCHHHHHHHHhhcC----CCCh-------hhHHHHHH-HHHhCCCHHHHHHHHHHHHhc----CCccCccchHHHHH
Q 005481 262 VKCGCLVEARRVFDLIE----QKSV-------ISWSSLIL-GYAQEENLAEAMELFRQLRER----SLQVDGFVLSSMMG 325 (694)
Q Consensus 262 ~~~g~~~~A~~~f~~~~----~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~pd~~t~~~ll~ 325 (694)
....++++|..+..+.. .++. ..|+++-. .....|++++|.++-+..... -..+..+.++.+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45677888877776643 3222 35666543 334578889988888777653 12334455566666
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCCchHHHHHh-----hhhhhcCCHHH--HHHHHccCC-----CC-----ChhhHHH
Q 005481 326 VFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIV-----DMYLKCGLIDE--ATELFNEMP-----VK-----NVVTWTV 388 (694)
Q Consensus 326 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li-----~~y~~~g~~~~--A~~~~~~~~-----~~-----~~~~~~~ 388 (694)
+..-.|++++|..+.....+..-..++..+.... ..+...|+... ....|.... +. -+.....
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888888888877776654334444333222 22344553222 222333221 11 1223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCH--HHHH--HHHHHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHH
Q 005481 389 IITGYGKHGLAKEAVGLFRKMLLDD--VEPDG--VAYL--AVLSACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIV 461 (694)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~--~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 461 (694)
+..++.+ .+.+..-...-.+.| ..|.. .... .+.......|++++|...++.+.. ....+. ..-|.+++
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~-l~~~~~~~~~~~a~~ 661 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER-LLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhcCCCCCchHHHHH
Confidence 4444443 333322222222211 22333 2222 455666778999999988888866 222332 11222222
Q ss_pred ---H--HHHhcCChHHHHHHHHhC
Q 005481 462 ---D--SLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 462 ---~--~~~~~g~~~~A~~~~~~~ 480 (694)
. .-...|+.++|.....+.
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 2 234678888877776663
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.81 E-value=56 Score=30.09 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 005481 481 PVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDG 517 (694)
Q Consensus 481 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 517 (694)
...|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467777777777777777777777777777777777
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.21 E-value=42 Score=26.58 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=37.2
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCC---------cchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 496 CRVHGDLELGREVGEILLRLDGDN---------PVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 496 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
..+.||+..|.+.+.+.+...... ..+...++.++...|.+++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356678888877777776543211 23345677888899999999999988764
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.03 E-value=51 Score=30.37 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=17.8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005481 450 MKPRIEHYSCIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 450 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 480 (694)
..|+...|..++.++...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555566666666665555554
No 412
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.72 E-value=55 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHH
Q 005481 395 KHGLAKEAVGLFRKMLLDDVEPDG--VAYLAVLSACSHSGLVEESQEY 440 (694)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~ 440 (694)
...+.++|+..|...++.-..|.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888887775433332 4677788888888888887664
No 413
>PRK09169 hypothetical protein; Validated
Probab=47.01 E-value=7.8e+02 Score=32.06 Aligned_cols=468 Identities=10% Similarity=0.017 Sum_probs=248.3
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhhhC-----CCCCCceeHHHHHHHhcccCChHHHHHHHHHHHHh-------CCCC
Q 005481 79 VSWTALMCGFLQNGNAKACLSLFCQMGSS-----SVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKS-------GFEW 146 (694)
Q Consensus 79 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------g~~~ 146 (694)
..|..+.+.+++.-+...+.+.+..+... .-..|...+..+|+++++-.+-..+...-..+-.. -...
T Consensus 123 ~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al 202 (2316)
T PRK09169 123 AQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAM 202 (2316)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhc
Confidence 34555556665555544444433333211 11335666778888888776655555443333211 0122
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHccCC----C-------CCcccHHHHHHHHHhcCChhHHHHHHHH----HHHC---
Q 005481 147 NPVVGNSIIDMYSKCGRINEAARMFDVMP----A-------KSLITWNAMIAGYVLAGYSDKGLLLFRK----MQEH--- 208 (694)
Q Consensus 147 ~~~~~~~ll~~y~~~g~~~~A~~~f~~~~----~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~--- 208 (694)
+..-...++++++|.-+.......-..+- . -+......+++++++-.+-+.+...-.. +...
T Consensus 203 ~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~l 282 (2316)
T PRK09169 203 DAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGL 282 (2316)
T ss_pred chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhh
Confidence 33444556667776655444433332221 1 1344566677888876655443332222 2111
Q ss_pred CCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHh-----CCCCCcchhhHHHHHHHHHHcCCHHHHH----HHHhhcC-
Q 005481 209 GEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITS-----GFPYSVKTVIAGSLVDFYVKCGCLVEAR----RVFDLIE- 278 (694)
Q Consensus 209 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~~~li~~y~~~g~~~~A~----~~f~~~~- 278 (694)
...-|..-+...++++++..+-+.+.+.-..+-.. +.....+..-....+++++|..+-+.+. .+-+.+.
T Consensus 283 r~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~ 362 (2316)
T PRK09169 283 RLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLAR 362 (2316)
T ss_pred hhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 11246667788889998887655433322221110 1111134445556677888877766433 2222222
Q ss_pred ------CCChhhHHHHHHHHHhCCCHHH----HHHHHHHHHhc-C--CccCccchHHHHHHHhhhccHHHHHHHHHHH--
Q 005481 279 ------QKSVISWSSLILGYAQEENLAE----AMELFRQLRER-S--LQVDGFVLSSMMGVFADFALVEQGKQIHAYA-- 343 (694)
Q Consensus 279 ------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~-- 343 (694)
.-+..-....+.++.+-++-+. |..+...+... + -..|..-.+..+.+|++.+.-+.+.+....+
T Consensus 363 ~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~ 442 (2316)
T PRK09169 363 DAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAA 442 (2316)
T ss_pred ChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 1244556667788888766442 33344443332 1 1246667888999999887655443332222
Q ss_pred --Hhc---CCCCCchHHHHHhhhhhhcCCHHH----HHHHHccCC-------CCChhhHHHHHHHHHhcCCHHHHHH---
Q 005481 344 --AKV---PSGLDTSVSNSIVDMYLKCGLIDE----ATELFNEMP-------VKNVVTWTVIITGYGKHGLAKEAVG--- 404 (694)
Q Consensus 344 --~~~---~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~--- 404 (694)
... .-..+..-....+.+++|.++-+. |..+...+. .-+..-....+.++++-++.+.+..
T Consensus 443 rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~ 522 (2316)
T PRK09169 443 RLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAE 522 (2316)
T ss_pred HHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHH
Confidence 111 123456666677888888776442 233333332 1245556778888988887665433
Q ss_pred -HHHHHHHC---CCCCCHHHHHHHHHHHHccCcHHHH----HHHHHHHhhccC--CCCChhHHHHHHHHHHhcCChHH--
Q 005481 405 -LFRKMLLD---DVEPDGVAYLAVLSACSHSGLVEES----QEYFSRLCNDKR--MKPRIEHYSCIVDSLGRAGRLDE-- 472 (694)
Q Consensus 405 -~~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~a----~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~-- 472 (694)
+..++... --.-|..-+...++++++-.+.+.+ ..+...+.++.+ -..+.......++++++-+.-..
T Consensus 523 aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr 602 (2316)
T PRK09169 523 ALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACR 602 (2316)
T ss_pred HHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHH
Confidence 33322221 1123456678889999988764332 334443333211 12355678888999998776432
Q ss_pred --HHHHHHhCCC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc---CC-----CCCcchHHHHHhHHHhcCCc
Q 005481 473 --AKNLIESMPV------KPSIAIWQTLLSACRVHGDLELGREVGEILLR---LD-----GDNPVNYVMMSNIHADAGSW 536 (694)
Q Consensus 473 --A~~~~~~~~~------~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~---~~-----p~~~~~~~~l~~~~~~~g~~ 536 (694)
|..+...... .-+.--+.++++++.+-.+.+....+...+-+ .+ --++....++.|++++-.+.
T Consensus 603 ~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~ 682 (2316)
T PRK09169 603 AAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDE 682 (2316)
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCc
Confidence 3334444311 12456688899999998877765554444332 11 12345666777787777776
Q ss_pred hHHHHHHHHH
Q 005481 537 NECERLRKLA 546 (694)
Q Consensus 537 ~~a~~~~~~m 546 (694)
+.+.+....+
T Consensus 683 ~~c~~Aa~aL 692 (2316)
T PRK09169 683 AACRAAALAL 692 (2316)
T ss_pred HHHHHHHHHH
Confidence 6555444444
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.99 E-value=1.1e+02 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=24.2
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHhhh
Q 005481 80 SWTALMCGFLQNGNAKACLSLFCQMGS 106 (694)
Q Consensus 80 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 106 (694)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999998876
No 415
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.98 E-value=1.4e+02 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=23.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCcc
Q 005481 492 LLSACRVHGDLELGREVGEILLRLDGDNPV 521 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 521 (694)
.+..|.+.|.+++|.+++++..+ +|++..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 34568899999999999999988 776544
No 416
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.24 E-value=40 Score=37.96 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005481 396 HGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKN 475 (694)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 475 (694)
+.++++.+.+.+...--| .++|..+.+.|-.+-|+.+.+.=... .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 455666665554332222 12344455666666665544322221 233456889999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 005481 476 LIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRL 515 (694)
Q Consensus 476 ~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 515 (694)
.-.+.. |..+|..|+..-..+||.+.|+..|++....
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 887764 6778999999888889999999888887543
No 417
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.11 E-value=2.4e+02 Score=27.57 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH--
Q 005481 390 ITGYGKHGLAKEAVGLFRKMLL--DDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLG-- 465 (694)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-- 465 (694)
|.+++..+++.+++...-+--+ +.++|...-...++ |++.|....+.++-....+.. -+-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHH
Confidence 6677777777777654433222 22555544444444 788888888888877777622 2223344777777665
Q ss_pred ---hcCChHHHHHHHHhC
Q 005481 466 ---RAGRLDEAKNLIESM 480 (694)
Q Consensus 466 ---~~g~~~~A~~~~~~~ 480 (694)
=.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 468999999988543
No 418
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.63 E-value=2.1e+02 Score=24.87 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=27.0
Q ss_pred ChhhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCccCccchHHHHHHHhh
Q 005481 281 SVISWSSLILGYAQEEN-LAEAMELFRQLRERSLQVDGFVLSSMMGVFAD 329 (694)
Q Consensus 281 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 329 (694)
+-.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33456666666544443 33445566666665556666666666665543
No 419
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.31 E-value=4.8e+02 Score=28.89 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhcC-Ch--HHHHHHHhccCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHh
Q 005481 48 MLNNDLIDMYAKCG-EM--NGACAVFDKMLE-R-NVVSWTALMCGFLQNGNAKACLSLFCQM 104 (694)
Q Consensus 48 ~~~~~li~~~~~~g-~~--~~A~~~f~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 104 (694)
.+-..|++..-+.. .. +.+.+++..-+. . +..-|+ .+..++-.|.+++|.++++..
T Consensus 114 ~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 114 PVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45667777774432 22 222223322221 1 255677 677788889999999998554
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.83 E-value=3.8e+02 Score=27.60 Aligned_cols=88 Identities=14% Similarity=0.032 Sum_probs=50.4
Q ss_pred HHHHccCcHHHHHHHHHHHhhccCCCCC--hhHHHHHHHHHH-hcCChHHHHHHHHhCCC---------CCCHHHHHHHH
Q 005481 426 SACSHSGLVEESQEYFSRLCNDKRMKPR--IEHYSCIVDSLG-RAGRLDEAKNLIESMPV---------KPSIAIWQTLL 493 (694)
Q Consensus 426 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~---------~p~~~~~~~ll 493 (694)
..+.+.|-+..|.++.+-+.. +.|+ ......+||.|+ ++++++--+++.+.... -|+ ..++.-+
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL 186 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL 186 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH
Confidence 355666777777777777755 4443 334445566654 66666666666665421 121 2233333
Q ss_pred HHHHhcCCh---------------HHHHHHHHHHHcCCCC
Q 005481 494 SACRVHGDL---------------ELGREVGEILLRLDGD 518 (694)
Q Consensus 494 ~a~~~~g~~---------------~~a~~~~~~~~~~~p~ 518 (694)
.-+ ..++. +.|...+++++..-|.
T Consensus 187 A~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHH-HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 333 33333 7888888888877763
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.14 E-value=29 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHhhhCCCCCCceeHHHHHHHh
Q 005481 91 NGNAKACLSLFCQMGSSSVKPNEFTLSTNIKAS 123 (694)
Q Consensus 91 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 123 (694)
.|.-..|-.+|+.|+++|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3555678888888888888887 466666654
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.98 E-value=4.4e+02 Score=27.76 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=33.4
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005481 385 TWTVIITGYGK---HGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSG 432 (694)
Q Consensus 385 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 432 (694)
.+..+++++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455666555 4789999999999999998887766555555544433
No 423
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.70 E-value=4e+02 Score=26.87 Aligned_cols=129 Identities=13% Similarity=0.128 Sum_probs=84.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc------cCcHHHHHHHHHHHhhccCCCCC
Q 005481 380 VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSH------SGLVEESQEYFSRLCNDKRMKPR 453 (694)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~ 453 (694)
+.|...|+- +-.++++.++++....+. |........|.+|-. .-++..-..+|+.+.. +.|+
T Consensus 261 dQDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apS 328 (415)
T COG4941 261 DQDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPS 328 (415)
T ss_pred ccchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCC
Confidence 446666763 335788889988888775 888888887777632 2357777777877765 5566
Q ss_pred hhH-HHHHHHHHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcc
Q 005481 454 IEH-YSCIVDSLGRAGRLDEAKNLIESMPVKPS----IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPV 521 (694)
Q Consensus 454 ~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 521 (694)
..+ .|-- -++++.--.+.++..++...-+|. ...|..=...+.+.|+.++|...|++++++.++...
T Consensus 329 PvV~LNRA-VAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 329 PVVTLNRA-VALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred CeEeehHH-HHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 443 3332 233444446666777766633322 223444456678899999999999999998887543
No 424
>PRK09169 hypothetical protein; Validated
Probab=40.45 E-value=9.7e+02 Score=31.29 Aligned_cols=537 Identities=10% Similarity=0.015 Sum_probs=294.7
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHHhC-----CCCChhhHHHHHHHHHhcCChHHHHHHHhcc----CC-------
Q 005481 12 RQRLADSLRCCSKNLLLDYGVQLHGALVKMG-----FSFDLMLNNDLIDMYAKCGEMNGACAVFDKM----LE------- 75 (694)
Q Consensus 12 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~----~~------- 75 (694)
...+..+...+++..+.....+....+...- -..+......++++++|-.+-+.+...-..+ ..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 4557777777777766555555444444321 1356677788999999877665554433332 11
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHhh----hCC---CCCCceeHHHHHHHhcccCChHHHHHHHHHHHHh------
Q 005481 76 RNVVSWTALMCGFLQNGNAKACLSLFCQMG----SSS---VKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKS------ 142 (694)
Q Consensus 76 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g---~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------ 142 (694)
-|......+++++++.-+...+...-..+- ... ...+......+|+++++-.+-+.+++.-..+...
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 234445667788888776655544443332 111 1235667888999999987766655543333221
Q ss_pred -CCCCChhHHHHHHHHHHhcCChHHHHHHHccC--------C---CCCcccHHHHHHHHHhcCChhHH----HHHHHHHH
Q 005481 143 -GFEWNPVVGNSIIDMYSKCGRINEAARMFDVM--------P---AKSLITWNAMIAGYVLAGYSDKG----LLLFRKMQ 206 (694)
Q Consensus 143 -g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~--------~---~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~ 206 (694)
....+..-....+++++|..+-+.+...-..+ . .-+..-....+.++++-.+.+.+ ..+-..+.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 11234555667788888876655433222211 1 11334455567777777665542 23333332
Q ss_pred HCC---CCCChhhHHHHHHHHcccCCchHHH----HHHHHHHHh-CCCCCcchhhHHHHHHHHHHcCCHHHHHHHHhhc-
Q 005481 207 EHG---EIPDEFTFTSTLKACGSLGSVGGGT----QIHGFLITS-GFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLI- 277 (694)
Q Consensus 207 ~~g---~~p~~~t~~~ll~a~~~~~~~~~a~----~~~~~~~~~-g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~- 277 (694)
... -.-|..-+...++++++.++-+... .+-..+... +.....+..-....+++++|-+.-+.+......+
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 211 1346677888999999887655332 333332221 2111244555566777888877655443333222
Q ss_pred ---C-------CCChhhHHHHHHHHHhCCCHHH----HHHHHHHHHhc---CCccCccchHHHHHHHhhhccHHHHHHHH
Q 005481 278 ---E-------QKSVISWSSLILGYAQEENLAE----AMELFRQLRER---SLQVDGFVLSSMMGVFADFALVEQGKQIH 340 (694)
Q Consensus 278 ---~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~---g~~pd~~t~~~ll~~~~~~~~~~~a~~i~ 340 (694)
. .-+..-.+..+.++.+-++.+. +..+...+... .-..+..-+..++.++++.+..+.....-
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 1 1244456667777877665442 33344444221 11245566788999999888766554432
Q ss_pred HHH----Hh---cCCCCCchHHHHHhhhhhhcCCHHH----HHHHHccCC-------CCChhhHHHHHHHHHhcCCHH--
Q 005481 341 AYA----AK---VPSGLDTSVSNSIVDMYLKCGLIDE----ATELFNEMP-------VKNVVTWTVIITGYGKHGLAK-- 400 (694)
Q Consensus 341 ~~~----~~---~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~-- 400 (694)
..+ .. .--..+..-....+.+++|-.+.+. |..+...+. .-|...+...+.++.+-+...
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 222 21 1223466667778888888766332 233333332 235667777888888877643
Q ss_pred --HHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhcc----C--CCCChhHHHHHHHHHHhcCC
Q 005481 401 --EAVGLFRKMLLDD---VEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDK----R--MKPRIEHYSCIVDSLGRAGR 469 (694)
Q Consensus 401 --~A~~~~~~m~~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~--~~p~~~~~~~li~~~~~~g~ 469 (694)
.+..+...+.+.. -.-|..-+...++++++-...+.+......+.... + -.-+......+++++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 2344455544321 12355678889999999888776655444443211 1 12345677888899998887
Q ss_pred hHHHHHHHH----hCCC------CCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHc---C-CCCCcchHHHHHhHHH
Q 005481 470 LDEAKNLIE----SMPV------KPSIAIWQTLLSACRVHGDLELGRE----VGEILLR---L-DGDNPVNYVMMSNIHA 531 (694)
Q Consensus 470 ~~~A~~~~~----~~~~------~p~~~~~~~ll~a~~~~g~~~~a~~----~~~~~~~---~-~p~~~~~~~~l~~~~~ 531 (694)
.+.+.+... .+.. .-|..-....++++.+--+.+.... ++.++.+ + .--++....+..|+++
T Consensus 682 ~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLs 761 (2316)
T PRK09169 682 EAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLNALS 761 (2316)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHH
Confidence 655333322 2211 1244556667777766544333333 3333332 1 1123445566667777
Q ss_pred hcCCchHHHHHHHHHHh
Q 005481 532 DAGSWNECERLRKLARS 548 (694)
Q Consensus 532 ~~g~~~~a~~~~~~m~~ 548 (694)
+--+-..+.+..-.+..
T Consensus 762 Kwp~~~~c~~a~~~La~ 778 (2316)
T PRK09169 762 KWPQEPACQQAALLLAE 778 (2316)
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 77666666666555543
No 425
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.98 E-value=1.7e+02 Score=24.65 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHHHH
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIV 461 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 461 (694)
+..+-++.+....+.|+.......|.||.+.+++..|.++|+-++.+. .+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 445556666667789999999999999999999999999999886533 33333465554
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.39 E-value=47 Score=32.61 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 005481 181 TWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTST 220 (694)
Q Consensus 181 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 220 (694)
-||..|..-++.|++++|+.++++.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3778899999999999999999999998876555555443
No 427
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.29 E-value=72 Score=31.14 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhccCCC---CcccHHHHHHHHHhCCChHHHHHHHHHhh
Q 005481 49 LNNDLIDMYAKCGEMNGACAVFDKMLER---NVVSWTALMCGFLQNGNAKACLSLFCQMG 105 (694)
Q Consensus 49 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 105 (694)
+.+.....|..+|.+.+|.++-++...- +...|-.++..+...|+--+|..-++.|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455667888889999999888887653 45578888889999998888888777774
No 428
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=39.16 E-value=1.9e+02 Score=22.72 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC--CcchHHHHHhHHHhcCCch-HHHHHHHHH
Q 005481 485 SIAIWQTLLSACRVHGDLELGREVGEILLRLDGD--NPVNYVMMSNIHADAGSWN-ECERLRKLA 546 (694)
Q Consensus 485 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 546 (694)
|....-.+...+...|+++.|.+.+-.+++.+|+ +..+-..|..++...|.-+ -+.+.++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455666677778888888888888888877764 3556667777777777643 455555544
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.80 E-value=1.9e+02 Score=24.47 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHHHHHHHc--CCCCCcchHHHHHhHHHhcCCchHHHHHHHH
Q 005481 504 LGREVGEILLR--LDGDNPVNYVMMSNIHADAGSWNECERLRKL 545 (694)
Q Consensus 504 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (694)
.+..+|+.|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888875 4556678889999999999999999998875
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.79 E-value=42 Score=28.50 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=26.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005481 189 YVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKAC 224 (694)
Q Consensus 189 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 224 (694)
.-..|.-.+|..+|..|++.|-+||. |..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999998886 55665543
No 431
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.20 E-value=6.2e+02 Score=28.37 Aligned_cols=176 Identities=9% Similarity=0.039 Sum_probs=94.8
Q ss_pred HHHHHHHHHHH-hCCCCC--hhhHHHHHHHHH-hcCChHHHHHHHhccC----CCCcc-----cHHHHHHHHHhCCChHH
Q 005481 30 YGVQLHGALVK-MGFSFD--LMLNNDLIDMYA-KCGEMNGACAVFDKML----ERNVV-----SWTALMCGFLQNGNAKA 96 (694)
Q Consensus 30 ~a~~~~~~~~~-~g~~~~--~~~~~~li~~~~-~~g~~~~A~~~f~~~~----~~~~~-----~~~~li~~~~~~g~~~~ 96 (694)
.|...+..+.+ ..++|. ..++-.+...|. ...+++.|+..+.+.. +++.. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555555553 223332 345556666666 5688999999888762 12211 2334556666665555
Q ss_pred HHHHHHHhhhCCCC----CCceeHHHH-HHHhcccCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHH--hcCChHH
Q 005481 97 CLSLFCQMGSSSVK----PNEFTLSTN-IKASGVLSSVENGMQIHGMCMKSG---FEWNPVVGNSIIDMYS--KCGRINE 166 (694)
Q Consensus 97 A~~~~~~m~~~g~~----p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~y~--~~g~~~~ 166 (694)
|....++..+.--. +-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888887653211 112222222 222222378888888888777653 2334444444444332 3454555
Q ss_pred HHHHHccCC-------------CCCcccHHHHHH--HHHhcCChhHHHHHHHHHH
Q 005481 167 AARMFDVMP-------------AKSLITWNAMIA--GYVLAGYSDKGLLLFRKMQ 206 (694)
Q Consensus 167 A~~~f~~~~-------------~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~ 206 (694)
+.+..+++. .|-..+|..++. .+...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554441 123446666665 4556787777766666553
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.84 E-value=64 Score=30.29 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=50.3
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCC
Q 005481 496 CRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGL 551 (694)
Q Consensus 496 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 551 (694)
..+.++.+.+.+++.+++++-|+....|..++....++|+.+.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999998876543
No 433
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.75 E-value=2.7e+02 Score=27.19 Aligned_cols=21 Identities=10% Similarity=-0.145 Sum_probs=12.9
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 005481 185 MIAGYVLAGYSDKGLLLFRKM 205 (694)
Q Consensus 185 li~~~~~~g~~~~A~~~~~~m 205 (694)
=|.+++..+++.+++...-+-
T Consensus 89 GIQALAEmnrWreVLsWvlqy 109 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQY 109 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHH
Confidence 356677777777766554443
No 434
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.69 E-value=3.9e+02 Score=25.98 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHccCCCCCcccHHHHHHHHHhcCChh
Q 005481 146 WNPVVGNSIIDMYSKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSD 196 (694)
Q Consensus 146 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 196 (694)
.|+.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~ 138 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS 138 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc
Confidence 467788888889999999999998875554444433333443333334433
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.60 E-value=95 Score=24.54 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=17.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcC
Q 005481 492 LLSACRVHGDLELGREVGEILLRL 515 (694)
Q Consensus 492 ll~a~~~~g~~~~a~~~~~~~~~~ 515 (694)
+.......|+.++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344456778888888888887765
No 436
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.35 E-value=3.9e+02 Score=25.48 Aligned_cols=95 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred HhhhccHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCC----------------CCChhhHHHHH
Q 005481 327 FADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP----------------VKNVVTWTVII 390 (694)
Q Consensus 327 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------------~~~~~~~~~li 390 (694)
|.+..+..--.++.+-....++..+..-..+++ +...|+..+|...++.-. +|.+.....|+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005481 391 TGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAV 424 (694)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 424 (694)
..+.. +++++|.++++++-+.|+.|....-+..
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 437
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.86 E-value=1.3e+02 Score=23.31 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHH
Q 005481 31 GVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKAC 97 (694)
Q Consensus 31 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 97 (694)
...+++.+.+.|+- +....-...+...+.+.|.++++.++.+...+|.....++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34577777777642 2233333444566788899999999999888898888888877765443
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.74 E-value=90 Score=22.47 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHhh
Q 005481 419 VAYLAVLSACSHSGLVEESQEYFSRLCN 446 (694)
Q Consensus 419 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 446 (694)
.-...++.++...|++++|.++.+.+..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555666666666665555543
No 439
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.38 E-value=1.1e+02 Score=29.81 Aligned_cols=58 Identities=22% Similarity=0.142 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 491 TLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 491 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
.+=+++...++++.|....++.+.++|.++....--+-+|...|-..-|.+-.+...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3445678889999999999999999999988888889999999999999888887554
No 440
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=34.30 E-value=2.9e+02 Score=23.41 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=63.9
Q ss_pred hHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHH---HHHHHhcc-------cCChHHH
Q 005481 63 MNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLS---TNIKASGV-------LSSVENG 132 (694)
Q Consensus 63 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~-------~~~~~~a 132 (694)
+.-|..++.+....+ .....++.+.+..-.-.++++..++....-.|..+.-. .-++.|-. .+.....
T Consensus 5 p~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlv 82 (126)
T PF10155_consen 5 PNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLV 82 (126)
T ss_pred HHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhH
Confidence 334444444443222 25556666666666667777777776655444433221 12233332 2223334
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHccCC
Q 005481 133 MQIHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMP 175 (694)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~ 175 (694)
-.+...+++.++......+..+-..+.+..+..+|..+|+-+.
T Consensus 83 cvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 83 CVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 4456777777776666777777777888888888888887553
No 441
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.17 E-value=6.1e+02 Score=27.14 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=10.7
Q ss_pred HHHHHHcCCHHHHHHHHhhc
Q 005481 258 VDFYVKCGCLVEARRVFDLI 277 (694)
Q Consensus 258 i~~y~~~g~~~~A~~~f~~~ 277 (694)
+...+..|..+-+..+++.-
T Consensus 254 L~~A~~~~~~~iv~~Ll~~g 273 (480)
T PHA03100 254 LHYAVYNNNPEFVKYLLDLG 273 (480)
T ss_pred HHHHHHcCCHHHHHHHHHcC
Confidence 34445566666555555543
No 442
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=33.21 E-value=5.3e+02 Score=26.15 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=41.2
Q ss_pred HhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 005481 358 IVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKE-AVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEE 436 (694)
Q Consensus 358 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 436 (694)
+.|..++.++.+.+..+-+.+..-......++..++-...-.+. +..+++++... ||......+++|.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 34445555544444444444333222333344444433333322 23333333332 777777777777776655555
Q ss_pred HHHHHHHHhh
Q 005481 437 SQEYFSRLCN 446 (694)
Q Consensus 437 a~~~~~~m~~ 446 (694)
....+.....
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554555544
No 443
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.14 E-value=1.4e+02 Score=20.15 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=22.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005481 190 VLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLK 222 (694)
Q Consensus 190 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 222 (694)
.+.|..+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456777777777777777777666666665554
No 444
>PF15161 Neuropep_like: Neuropeptide-like
Probab=32.98 E-value=17 Score=24.93 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=11.7
Q ss_pred eeccccCCchhhhhhhh
Q 005481 649 KNLRVCGDCHEFIKGLS 665 (694)
Q Consensus 649 knl~~c~~~h~~~k~~s 665 (694)
.--|-|.|||.+- |+.
T Consensus 11 aesRPCVDCHAFe-fmq 26 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQ 26 (65)
T ss_pred CCCCCchhhHHHH-HHH
Confidence 3458899999765 554
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.78 E-value=84 Score=30.96 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVL 425 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 425 (694)
-|+..|..-.+.||.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888899999999999999999988766556665443
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.15 E-value=64 Score=23.26 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005481 180 ITWNAMIAGYVLAGYSDKGLLLFRKMQE 207 (694)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 207 (694)
.-.-.+|.+|.+.|++++|.+...++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344568888888888888888887754
No 447
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.09 E-value=2e+02 Score=22.30 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=29.8
Q ss_pred HHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHH
Q 005481 262 VKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEA 301 (694)
Q Consensus 262 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (694)
....+.+.|.++++.++.++..+|.+...++...|+..-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445678888888888888888888888888777765443
No 448
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.02 E-value=4.4e+02 Score=24.85 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHhhccCCCCC----hhHHHHH
Q 005481 386 WTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD-GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR----IEHYSCI 460 (694)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 460 (694)
.+..++.+.+.+...+|+...++-++. +|. ..+-..++..++-.|++++|..-++..-+ +.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 344566677777788888877776664 343 34555566777778888888776666544 3443 4445555
Q ss_pred HHHHHhcCChHHHH-HHHHhC--C-CCC-CHHHHHH-HHHHHHh--cCChHHHHHHHHHHHcCCCCCc
Q 005481 461 VDSLGRAGRLDEAK-NLIESM--P-VKP-SIAIWQT-LLSACRV--HGDLELGREVGEILLRLDGDNP 520 (694)
Q Consensus 461 i~~~~~~g~~~~A~-~~~~~~--~-~~p-~~~~~~~-ll~a~~~--~g~~~~a~~~~~~~~~~~p~~~ 520 (694)
|..- .+. ++|..- | +-- +...|-. |+.+..- .|.-+.....-+.+++..|..+
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 4422 222 223221 1 110 2334443 3444332 2344555566666777666543
No 449
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.14 E-value=5.5e+02 Score=25.65 Aligned_cols=84 Identities=23% Similarity=0.112 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHHHhhccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005481 432 GLVEESQEYFSRLCNDKRM---KPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREV 508 (694)
Q Consensus 432 g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 508 (694)
+-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+.-.++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467888888888763121 3455666777777788888666555655555556778888899998888999999999
Q ss_pred HHHHHcC
Q 005481 509 GEILLRL 515 (694)
Q Consensus 509 ~~~~~~~ 515 (694)
++.++.-
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9999984
No 450
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.42 E-value=2.4e+02 Score=28.04 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 005481 257 LVDFYVKCGCLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRE 310 (694)
Q Consensus 257 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (694)
++..+.+.+++.+..+.+..+ +.+..-...+..+...|++.+|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555555555555555444 2333445567778889999999999888765
No 451
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=30.39 E-value=26 Score=18.58 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=8.7
Q ss_pred CCchhhhhhhhh
Q 005481 655 GDCHEFIKGLSK 666 (694)
Q Consensus 655 ~~~h~~~k~~s~ 666 (694)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457888888874
No 452
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.95 E-value=2.5e+02 Score=29.57 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCCC-------------ChhhHHHHHHHH-----
Q 005481 332 LVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPVK-------------NVVTWTVIITGY----- 393 (694)
Q Consensus 332 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~----- 393 (694)
.+++-.++++.+.+.|- ..+...-|+.|.+.+++++|..-+++-.+. .+.....++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g~---ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGG---ADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHccC---CCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 44555555555555541 113344567777777777777776644321 112222233322
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHhh------ccCCCCChhHHHHH
Q 005481 394 GKHGLAKEAVGLFRKMLLDDVEPDG---VAYLAVLSACSHSGLVEESQEYFSRLCN------DKRMKPRIEHYSCI 460 (694)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~------~~~~~p~~~~~~~l 460 (694)
.+||.+ ++..+++-+...|+.... ++|+. -|++.=-++++...|+.+-+ ..|+..|.+.|.+|
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 234433 566677777777655433 34332 34555556666666654322 23555555555443
No 453
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=29.75 E-value=34 Score=29.15 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.4
Q ss_pred EEEEeeccccCCchhhhh
Q 005481 645 IRVFKNLRVCGDCHEFIK 662 (694)
Q Consensus 645 ~~~~knl~~c~~~h~~~k 662 (694)
.+|.||..+|--||+..-
T Consensus 80 Yqvtkn~N~CLsCH~~e~ 97 (155)
T COG3043 80 YQVTKNTNRCLSCHSVEN 97 (155)
T ss_pred ceeecccchhhhccCHHH
Confidence 579999999999998653
No 454
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=29.62 E-value=4.5e+02 Score=28.63 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC-cchHHHHHhH
Q 005481 455 EHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN-PVNYVMMSNI 529 (694)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~ 529 (694)
..-.+|-+-+....++.-|.++-.+.++. ....|.+..-+|.+.+++..|..-|++.+++...| |.....+.+.
T Consensus 557 ~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ 631 (1141)
T KOG1811|consen 557 AASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL 631 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh
Confidence 34566777777777778888777777654 45679999999999999999999999999987543 3444444444
No 455
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.68 E-value=1.9e+02 Score=19.52 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005481 394 GKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVL 425 (694)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 425 (694)
.+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34566666666666666666666655555544
No 456
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.64 E-value=3.9e+02 Score=25.26 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHH--HHHHHHHHHccCcHHHHHHHHHHHhhccCCCCChhHHHH
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP---DGVA--YLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSC 459 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 459 (694)
-.|.|+--|.-+..+.+|-+.|.. +.|+.| |..+ -..-+......|++++|++....... .-+.-|.+.+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccchhHHHH
Confidence 445555555555555566655543 334444 2222 23344455677888888777766643 223334322222
Q ss_pred HHH----HHHhcCChHHHHHHHHh
Q 005481 460 IVD----SLGRAGRLDEAKNLIES 479 (694)
Q Consensus 460 li~----~~~~~g~~~~A~~~~~~ 479 (694)
|.. =+.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 221 24578888888888875
No 457
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.27 E-value=3.7e+02 Score=22.76 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHH
Q 005481 454 IEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAI-WQTLLSACRVHGDLELGREVGEIL 512 (694)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~ 512 (694)
..+..++..++.=.|..++|.++++..+.-+.-.. -.-++..|+...+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44555666677777777777777777655444333 344666777666666655554443
No 458
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.16 E-value=6.2e+02 Score=25.01 Aligned_cols=57 Identities=5% Similarity=0.088 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhCCCHHHHHHHH
Q 005481 249 VKTVIAGSLVDFYVKCGCLVEARRVFDLIE-----QKSVISWSSLILGYAQEENLAEAMELF 305 (694)
Q Consensus 249 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (694)
.+..+....+..+++.+++..-.++++... ..|...|..+|......|+..-..++.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 444555556666666666666666665432 246667777777777777765444433
No 459
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=27.11 E-value=23 Score=25.73 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=16.3
Q ss_pred ceEEEecCCccccccCccccC
Q 005481 670 LVFVVRDATRFHRFEGGVCSC 690 (694)
Q Consensus 670 ~~i~~~d~~~~h~f~~g~csc 690 (694)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 347788999999999998653
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.08 E-value=3e+02 Score=30.39 Aligned_cols=47 Identities=6% Similarity=-0.058 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCcH
Q 005481 388 VIITGYGKHGLAKEAVGLFRKMLLDD--VEPDGVAYLAVLSACSHSGLV 434 (694)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~a~~~~g~~ 434 (694)
+|..+|..+|++..+.++++.....+ -+.-...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56677777777777777776666432 111223455556666666643
No 461
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.84 E-value=3.5e+02 Score=29.96 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 005481 199 LLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRV 273 (694)
Q Consensus 199 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (694)
....+++...-...+.....-++..|.+.|-.+.+..+...+-..-. ...-+..-+..+.++|+.+....+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~----~~~~~g~AL~~~~ra~d~~~v~~i 460 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL----KEGRYGEALSWFIRAGDYSLVTRI 460 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHCCCHHHHHHH
Confidence 33333433332233444455555556666655555555554433322 112233334445555555444433
No 462
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.80 E-value=2.6e+02 Score=21.95 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCCh
Q 005481 31 GVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNA 94 (694)
Q Consensus 31 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 94 (694)
...+.+.+.+.|+-.+ ...-...+..-+.+.+.++++.++.+...+|..+..++-..+..
T Consensus 22 ~~~v~~~L~~~gvlt~----~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILTD----SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCCH----HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3456777777664322 22223334556778888899998888888888888888665543
No 463
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.45 E-value=1.9e+02 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=7.5
Q ss_pred HHHhcCChHHHHHHHhc
Q 005481 56 MYAKCGEMNGACAVFDK 72 (694)
Q Consensus 56 ~~~~~g~~~~A~~~f~~ 72 (694)
..+..|+.+-+..+++.
T Consensus 32 ~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 32 YAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHTTTHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 33344444444444443
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.57 E-value=7.8e+02 Score=25.64 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=40.9
Q ss_pred HHHHHhhhhhhcCCHHHHHHHHccCCC-----C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005481 354 VSNSIVDMYLKCGLIDEATELFNEMPV-----K-NVVTWTVIITGYGKHGLAKEAVGLFRKMLL 411 (694)
Q Consensus 354 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (694)
...-+.+-|..||+++.|.+.|.+..+ + -+..|-.+|..-.-.|++........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345678889999999999999999662 1 233566666666667777776666666554
No 465
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.07 E-value=7.2e+02 Score=25.05 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh
Q 005481 456 HYSCIVDSLGRAGRLDEAKNLIES 479 (694)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~ 479 (694)
.+-....-|++.|+-+.|++.+++
T Consensus 106 a~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 344445556666666666666544
No 466
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=25.03 E-value=7.2e+02 Score=29.10 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCcc
Q 005481 256 SLVDFYVKCGCLVEARRVFDLIEQK---SVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGF 318 (694)
Q Consensus 256 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 318 (694)
..+...+..|+.+-+..+++.-.+. |..-++.|..+ +..|+.+-+ +.+.+.|..++..
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A-~~~g~~~iv----~~Ll~~GAdv~~~ 684 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA-MAEDHVDMV----RLLIMNGADVDKA 684 (823)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCcHHHH----HHHHHcCCCCCCC
Confidence 3455566677777777776653332 33334444433 445554433 3334455555443
No 467
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.01 E-value=1.4e+02 Score=31.38 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=46.7
Q ss_pred hhhcCCHHHHHHHHccCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHH
Q 005481 362 YLKCGLIDEATELFNEMPV--KNV-VTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDG-VAYLAVLSACSHSGLVEES 437 (694)
Q Consensus 362 y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a 437 (694)
+.+.+.++.|..++.++.+ ||- ..|..-..++.+.+++..|+.=+.++++ ..|.. ..|.-=..+|...+.+.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHHHH
Confidence 3445556666666655542 322 2233333555555666666555555554 22433 2333333455555555555
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHH
Q 005481 438 QEYFSRLCNDKRMKPRIEHYSCIVD 462 (694)
Q Consensus 438 ~~~~~~m~~~~~~~p~~~~~~~li~ 462 (694)
...|+.... +.|+..-...+++
T Consensus 92 ~~~l~~~~~---l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 92 LLDLEKVKK---LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHhhh---cCcCcHHHHHHHH
Confidence 555555544 4555444444443
No 468
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=24.88 E-value=3.5e+02 Score=28.96 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC--------CcchHHH
Q 005481 454 IEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLRLDGD--------NPVNYVM 525 (694)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~~ 525 (694)
+..|...+.-|...+++++|.++.+-.+ +...|.+|...-..+.+...++.+|..+.+.+.- -+.--..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3345666667777888888888776643 4567887777777777777777777666654321 0111223
Q ss_pred HHhHHHhcCCchHHHHHHH
Q 005481 526 MSNIHADAGSWNECERLRK 544 (694)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~ 544 (694)
++....-.|+..||.-++.
T Consensus 650 mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHhccchhhhHHHH
Confidence 3333444566666655543
No 469
>PRK11586 napB nitrate reductase cytochrome C550 subunit; Provisional
Probab=24.73 E-value=43 Score=28.62 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=16.9
Q ss_pred CCCcEEEEeeccccCCchhhhhh
Q 005481 641 PGKVIRVFKNLRVCGDCHEFIKG 663 (694)
Q Consensus 641 ~~~~~~~~knl~~c~~~h~~~k~ 663 (694)
+|+ .|.+|.-.|-.||+..+.
T Consensus 72 ~gy--qIt~n~N~CL~CH~~~~a 92 (149)
T PRK11586 72 EGY--QVTTNTNRCLQCHGVESY 92 (149)
T ss_pred CCc--eeccCCCcCccCCCHhHH
Confidence 444 689999999999987654
No 470
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.71 E-value=5.7e+02 Score=27.28 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=41.5
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 005481 494 SACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKGLKKVAG 556 (694)
Q Consensus 494 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 556 (694)
.++.+..+...+.+-.+.......+.+.....-++.+...|++..|.+++.. .++.+.||
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 4445556666666666666666666677777778999999999999877653 44555554
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.51 E-value=8.1e+02 Score=25.43 Aligned_cols=29 Identities=7% Similarity=-0.286 Sum_probs=18.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005481 392 GYGKHGLAKEAVGLFRKMLLDDVEPDGVA 420 (694)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 420 (694)
.+...+++..|.++|+++....+.|+..+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 44556777777777777776655444433
No 472
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=24.37 E-value=7.3e+02 Score=24.89 Aligned_cols=162 Identities=13% Similarity=0.176 Sum_probs=86.9
Q ss_pred HHHHHHhcCCCCCchHHHHHhhhhhhcCCHHHHHHHHccCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005481 339 IHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMPV-KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD 417 (694)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 417 (694)
+++.+...++.+......+-++.+.+.+.+|-+.+++..... .|.. +++ .. +-.+.+.-++++.++ +.|
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~----~e--kr~~Vla~lkeLe~e-v~p- 91 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NAL----VE--KRTEVLAELKELEEE-VAP- 91 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHH----HH--HHHHHHHHHHHHHHH-HHH-
Confidence 444455555555666666667777777888888888777631 1110 111 11 112222233333321 111
Q ss_pred HHHHHHHH---HHHHccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHH---HhCCCCCCH----
Q 005481 418 GVAYLAVL---SACSHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLI---ESMPVKPSI---- 486 (694)
Q Consensus 418 ~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~---~~~~~~p~~---- 486 (694)
...++ +.-.....-.+....++.+.+++++.|+ .++.--...-...+|++..|-+.+ +.....||.
T Consensus 92 ---iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 92 ---IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred ---HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 11111 1111122233446788888888999997 445555666677899999887764 333334443
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 005481 487 AIWQTLLSACRVHGDLELGREVGEILLR 514 (694)
Q Consensus 487 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 514 (694)
..|+-|.+-.. .-+++.|.+-+.++.+
T Consensus 169 alwGKlASEIL-~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 169 ALWGKLASEIL-TQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 44666555432 2457777776666554
No 473
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=7.5e+02 Score=25.59 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=59.9
Q ss_pred HHHhhhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH
Q 005481 356 NSIVDMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVE 435 (694)
Q Consensus 356 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 435 (694)
..|...+-.+|++++|..++.+.+ +.||.+| ...+...-++++|.- |...+++-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~---VETygsm-------~~~ekV~fiLEQmrK----------------OG~~~D~v 188 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ---VETYGSM-------EKSEKVAFILEQMRL----------------CLLRLDYV 188 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhh-------HHHHHHHHHHHHHHH----------------HHHhhhHH
Confidence 456677888999999999988765 4445443 223444445555542 44455555
Q ss_pred HHHHHHHHHhhccCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 005481 436 ESQEYFSRLCNDKRMKPRI-----EHYSCIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 436 ~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~ 480 (694)
.|.-+-+.+..++=-.|+. .-|+.|+......+.+=++-+.++..
T Consensus 189 ra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 189 RAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 5555555554433334442 34677777777777777777777665
No 474
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.20 E-value=3.8e+02 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 005481 461 VDSLGRAGRLDEAKNLIESMPVKPSIAIWQ 490 (694)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 490 (694)
+-.|.+.|.+++|.+++++.-..|+.....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 445666777777777776653244443333
No 475
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.03 E-value=84 Score=31.45 Aligned_cols=116 Identities=19% Similarity=0.205 Sum_probs=74.6
Q ss_pred HccCcHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHH
Q 005481 429 SHSGLVEESQEYFSRLCNDKRMKPR-IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKPSIAI-WQTLLSACRVHGDLELG 505 (694)
Q Consensus 429 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~a~~~~g~~~~a 505 (694)
...|.+++|++.|...++ +.|. ...|..-..++.+.++...|+.=+... .+.||..- |-.-..+-+..|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~---lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE---LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccc---cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 345778888888887776 3443 445555666777778888777766655 55666432 33334456777899999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHh
Q 005481 506 REVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARS 548 (694)
Q Consensus 506 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 548 (694)
...++.+.+++-+ ..+-..|-...-+++..++-...+++.++
T Consensus 202 a~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 9999998888765 33444455555566666665555555443
No 476
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=23.84 E-value=1.5e+02 Score=29.35 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=36.7
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHH
Q 005481 466 RAGRLDEAKNLIESM-PVKP-SIAIWQT-LLSACRVHGDLELGREVGEILLRLDGDNPVNYVMM 526 (694)
Q Consensus 466 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 526 (694)
+.|.+.+.-.++.+. ...| |+..|-. --.-+..+++++.+..++.+.+.++|++|..|...
T Consensus 119 k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 119 KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 334444444444443 2222 3444532 11234677899999999999999999988776543
No 477
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=23.77 E-value=2.8e+02 Score=21.06 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=45.2
Q ss_pred HHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCce---eHHHHHHHhcccCChHHH
Q 005481 56 MYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEF---TLSTNIKASGVLSSVENG 132 (694)
Q Consensus 56 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a 132 (694)
..++.|+++-...+++.-...+. -.+ .+...+..|+. ++++.+.+.|..|+.. -++.+.. .+..|+.
T Consensus 3 ~A~~~~~~~~~~~ll~~~~~~~~-~~~-~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~--- 72 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEKGADINL-GNT-ALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNL--- 72 (89)
T ss_dssp HHHHTTTHHHHHHHHHTTSTTTS-SSB-HHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHH---
T ss_pred HHHHcCCHHHHHHHHHCcCCCCC-CCC-HHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCH---
Confidence 34567777777777774444343 122 44445566663 5556666677777654 2333443 3444554
Q ss_pred HHHHHHHHHhCCCCCh
Q 005481 133 MQIHGMCMKSGFEWNP 148 (694)
Q Consensus 133 ~~~~~~~~~~g~~~~~ 148 (694)
++.+.+++.|..++.
T Consensus 73 -~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 73 -EIVKLLLEHGADVNI 87 (89)
T ss_dssp -HHHHHHHHTTT-TTS
T ss_pred -HHHHHHHHcCCCCCC
Confidence 456677777776654
No 478
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.56 E-value=5.5e+02 Score=23.19 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=43.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005481 423 AVLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGD 501 (694)
Q Consensus 423 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~ 501 (694)
.-|.-|.+.|+++.+...|.++...++-.. ....+.. -+.++..+++++. ...|..|.... ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 455567777888888777777765322111 1111111 1233333333221 12233333221 55
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHH
Q 005481 502 LELGREVGEILLRLDGDNPVNYVM 525 (694)
Q Consensus 502 ~~~a~~~~~~~~~~~p~~~~~~~~ 525 (694)
.++...+.+.+++++|++-+++..
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Confidence 677778888888888754444433
No 479
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.38 E-value=3.9e+02 Score=24.56 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=25.9
Q ss_pred hhcCCHHHHHHHHccCCC------CChhhHHHHHH-HHHhcCC--HHHHHHHHHHHHH
Q 005481 363 LKCGLIDEATELFNEMPV------KNVVTWTVIIT-GYGKHGL--AKEAVGLFRKMLL 411 (694)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 411 (694)
...|++++|..-++++.+ .-...|..+.. +++.++. +-+|..++.-...
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 345666666666655541 22334555544 5666654 4466666555544
No 480
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.15 E-value=3.5e+02 Score=29.43 Aligned_cols=133 Identities=13% Similarity=-0.011 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhC-CCCCC--HH
Q 005481 414 VEPDGVAYLAVLSACSHS--GLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLG-RAGRLDEAKNLIESM-PVKPS--IA 487 (694)
Q Consensus 414 ~~pd~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~-~~~p~--~~ 487 (694)
--|+..|.-.++.-...- ..-+-|-.++..|.+ .+.|-=... .+..+|- -.|+...|.+.+..+ ..+|. .+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346666666655443322 223445556655543 233321111 1233343 468888888887765 33332 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHHhC
Q 005481 488 IWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 488 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 549 (694)
..-.|.+...+.|-.-.|-.++.+.+.+.-..|-++..++++|....+.+.|.+.++.+.+.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 34455666667777778889999999888777889999999999999999999999887764
No 481
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.10 E-value=4.6e+02 Score=29.05 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=18.1
Q ss_pred HHHHHHcccCCchHHHHHHHHHHHhC
Q 005481 219 STLKACGSLGSVGGGTQIHGFLITSG 244 (694)
Q Consensus 219 ~ll~a~~~~~~~~~a~~~~~~~~~~g 244 (694)
+++.||...|++..+.++++......
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~ 58 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN 58 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC
Confidence 67777777777777777777666543
No 482
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.67 E-value=9.3e+02 Score=25.96 Aligned_cols=148 Identities=9% Similarity=-0.037 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHH
Q 005481 9 VSERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLERNVVSWTALMCGF 88 (694)
Q Consensus 9 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 88 (694)
+|+.......|...+....+.-.....+.+.+.. ..|....-.++..+.....-.--....+.+........-.-+--.
T Consensus 175 ~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s 253 (472)
T PRK14962 175 NISDELIIKRLQEVAEAEGIEIDREALSFIAKRA-SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA 253 (472)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcccCChH------HHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005481 89 LQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVE------NGMQIHGMCMKSGFEWNPVVGNSIIDM 157 (694)
Q Consensus 89 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~------~a~~~~~~~~~~g~~~~~~~~~~ll~~ 157 (694)
.+.++++.|+.++..|...|..|....-..+..+.-..|.-+ .+..+++...+.|++.......-++-+
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~ 328 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLGSA 328 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
No 483
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.48 E-value=6.2e+02 Score=23.34 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=15.3
Q ss_pred HHHHHHcccCCchHHHHHHHHHHHh
Q 005481 219 STLKACGSLGSVGGGTQIHGFLITS 243 (694)
Q Consensus 219 ~ll~a~~~~~~~~~a~~~~~~~~~~ 243 (694)
+++-.|.+.-++.+++++++.+.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677666666554
No 484
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.36 E-value=6.5e+02 Score=23.61 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=9.1
Q ss_pred HHhcCChHHHHHHHHHHHc
Q 005481 496 CRVHGDLELGREVGEILLR 514 (694)
Q Consensus 496 ~~~~g~~~~a~~~~~~~~~ 514 (694)
.++.|+.++|.+.+.+++.
T Consensus 175 ~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 175 NRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHhCCHHHHHHHHHHHHc
Confidence 3444555555555554443
No 485
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.05 E-value=1.7e+02 Score=22.01 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=30.6
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhcc
Q 005481 292 YAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFAL 332 (694)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 332 (694)
....|+.+++.+++++....|..|.......+..+....|.
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999988888887777667766665554
No 486
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.00 E-value=9.4e+02 Score=25.31 Aligned_cols=233 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCchHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHcC
Q 005481 186 IAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCG 265 (694)
Q Consensus 186 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g 265 (694)
|.++...| ..+++.+....... ++...+.....++....+......+.+.+.. .+..+....+..+.+.+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d------~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQA------GPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcC------CCHHHHHHHHHHHhcCC
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCccCccchHHHHHHHhhhccHHHHHHHHHHHHh
Q 005481 266 CLVEARRVFDLIEQKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAK 345 (694)
Q Consensus 266 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 345 (694)
..+....+...+...+...-.+.+.++...+ .++...+....+ .+|...-...+.++...+..+....+...
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~a--- 186 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--HDPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLY--- 186 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--cChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHH---
Q ss_pred cCCCCCchHHHHHhhhhhhcCCHHHHHHHHcc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005481 346 VPSGLDTSVSNSIVDMYLKCGLIDEATELFNE-MPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAV 424 (694)
Q Consensus 346 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 424 (694)
-...+..+-..-+.+....|. .+|...... ...++....-.+...+...|.. +++..+..+.+ +..+-...
T Consensus 187 -l~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~-----d~~vr~~a 258 (410)
T TIGR02270 187 -LRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQ-----AAATRREA 258 (410)
T ss_pred -HcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCch-hHHHHHHHHhc-----ChhhHHHH
Q ss_pred HHHHHccCcHHHHHHHHHHH
Q 005481 425 LSACSHSGLVEESQEYFSRL 444 (694)
Q Consensus 425 l~a~~~~g~~~~a~~~~~~m 444 (694)
+.++...|+....--+.+.|
T Consensus 259 ~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHcCCcchHHHHHHHh
No 487
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=7.2e+02 Score=23.95 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=33.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 005481 461 VDSLGRAGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDN 519 (694)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 519 (694)
-..+...|++-++++--.+. ...| ++..|---..|....=+.++|..-+.++++++|.-
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 34444455555555544443 2222 23333333344444556788999999999999853
No 488
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=1.3e+03 Score=26.86 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=84.3
Q ss_pred hhhhhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 005481 360 DMYLKCGLIDEATELFNEMPVKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQE 439 (694)
Q Consensus 360 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 439 (694)
.....||+++.|.+.-.++. |...|..|+..-...|+.+-|.-.|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 44567899999888766654 556899999998999999999888887664 2222223455677777666
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 005481 440 YFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESMPVKPSIAIWQTLLSACRVHGDLELGREVGEILLR 514 (694)
Q Consensus 440 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 514 (694)
+-..+.. +-|... ....-.-.|+.++=.++++..+..|-. |. .-..+|.-++|+++.+++-.
T Consensus 720 m~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 6555533 222211 111111257888888888877644321 21 12467888999998888765
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.66 E-value=3.4e+02 Score=24.38 Aligned_cols=46 Identities=13% Similarity=-0.042 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHcccC
Q 005481 183 NAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLG 228 (694)
Q Consensus 183 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 228 (694)
..++..+...+..-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444444444555566666666666665555555544444444444
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.61 E-value=5.3e+02 Score=24.78 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 005481 389 IITGYGKHGLAKEAVGLFRKMLL----DD-VEPDGVAYLAVLSACSHSGLVEESQEYF 441 (694)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 441 (694)
|..-|...|++++|+++|+.+.. +| ..+...+...++.+..+.|+.+....+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45566666777777777766642 22 1223334444555555666665555443
No 491
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.60 E-value=3.9e+02 Score=23.25 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 005481 183 NAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTF 217 (694)
Q Consensus 183 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 217 (694)
..++..+.+.+..-.|.++++++.+.+...+..|.
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTV 58 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATV 58 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHH
Confidence 33444444444445555555555554444333333
No 492
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=9.4e+02 Score=25.07 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH--------HHHHHHccCcHHHHHHHHHHHhhccCCCCC----hhHHHHHHHH
Q 005481 396 HGLAKEAVGLFRKMLLDDVEPDGVAYLA--------VLSACSHSGLVEESQEYFSRLCNDKRMKPR----IEHYSCIVDS 463 (694)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~--------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~ 463 (694)
..++++|.++-+.....-..-|..|+.. +-.++...|+...-...+....+..-+.-| ....|+|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 3556666665555443211223333222 222344556666655555555443333333 3345677777
Q ss_pred HHhcCChHHHHHHHHhCCCC--CCHHHHHHH----HHHHHhcCChHHHHHHHHHHHcCCCC
Q 005481 464 LGRAGRLDEAKNLIESMPVK--PSIAIWQTL----LSACRVHGDLELGREVGEILLRLDGD 518 (694)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l----l~a~~~~g~~~~a~~~~~~~~~~~p~ 518 (694)
|...+.++.|.+++.+.+.+ ....-|.-. ...-..++++..|.+.+-.++...|.
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 77778888888888776422 111122221 11234567777777777777766664
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.25 E-value=9.3e+02 Score=24.98 Aligned_cols=17 Identities=6% Similarity=-0.203 Sum_probs=7.8
Q ss_pred hhcCCHHHHHHHHccCC
Q 005481 363 LKCGLIDEATELFNEMP 379 (694)
Q Consensus 363 ~~~g~~~~A~~~~~~~~ 379 (694)
.+.+++..|.++|+++.
T Consensus 141 ~n~~dy~aA~~~~~~L~ 157 (380)
T TIGR02710 141 INAFDYLFAHARLETLL 157 (380)
T ss_pred HHhcChHHHHHHHHHHH
Confidence 33444444444444443
No 494
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=21.15 E-value=76 Score=33.05 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=80.4
Q ss_pred CCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHHH--HHHHHHhcCChHHHHHHHhccCC--CC----
Q 005481 6 FSLVSERQRLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNND--LIDMYAKCGEMNGACAVFDKMLE--RN---- 77 (694)
Q Consensus 6 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~f~~~~~--~~---- 77 (694)
-|+.||.++|.+=..+--+......|+..+..++ ||...-.. -=..-...|.-..-+++|+.+.- |+
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ 483 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEM 483 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHH
Confidence 4566666666544433333334444554444332 44433222 00011122445566788988742 32
Q ss_pred ------cccHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCceeHHHHHHHhcc------cCChHHHHHHHHHHHHhCCC
Q 005481 78 ------VVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGV------LSSVENGMQIHGMCMKSGFE 145 (694)
Q Consensus 78 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~~~~~~a~~~~~~~~~~g~~ 145 (694)
...|+.|..++.++-.+.+ +.+=.+|...|-+-+.++ .+|++ ..+...|.++-.+.+-.-+.
T Consensus 484 ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~i-----m~~Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 484 CTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVI-----MILGKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred hhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeE-----eeeccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 2358888888888766642 223334444443333333 22322 23566778877776666678
Q ss_pred CChhHHHHHHHHHHhc
Q 005481 146 WNPVVGNSIIDMYSKC 161 (694)
Q Consensus 146 ~~~~~~~~ll~~y~~~ 161 (694)
|...+|.+|+.+|++.
T Consensus 558 Ph~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 558 PHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHhhhHHHHHHHhhhh
Confidence 9999999999999876
No 495
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=21.03 E-value=2.8e+02 Score=23.67 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=51.9
Q ss_pred EEEEEEeCC-CCCcCcHHHHHHHHHHHHHHHHhcCcccCccccccccchhhhhhcccccchHHHHhhhhhhcCCCCCCCC
Q 005481 565 EIHFFYGGD-DTHPLTEKIHQVLMEMEKRMKEELGFVYGVKYALHDIQEESKEESLRVHSEKLAIGLALVRGGLNEQPGK 643 (694)
Q Consensus 565 ~~~~f~~~~-~~~~~~~~i~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~ 643 (694)
..-.|..|| ..+|++..+-..|++|.+++. ... ..+.-.+++ ....||..||+.+.|
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~-~~~----v~~akVDiD----------~~~~LA~~fgV~siP------- 93 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYT----WQVAIADLE----------QSEAIGDRFGVFRFP------- 93 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhc-CCc----eEEEEEECC----------CCHHHHHHcCCccCC-------
Confidence 345788888 568999998888888866543 110 112222222 457899999998888
Q ss_pred cEEEEeecccc------CCchhhhhhhhhccCc
Q 005481 644 VIRVFKNLRVC------GDCHEFIKGLSKILKL 670 (694)
Q Consensus 644 ~~~~~knl~~c------~~~h~~~k~~s~~~~~ 670 (694)
++-++||=..- .+-....++|+++..|
T Consensus 94 TLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 94 ATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 66666663221 2334555666665555
No 496
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=3.6e+02 Score=29.73 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=26.1
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCcchHHHHHhHHHhcCCchHHHHHHHHHH
Q 005481 495 ACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLAR 547 (694)
Q Consensus 495 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 547 (694)
.|....+.|.|.++++++-+.+|.++-.-..+..+....|+-++|........
T Consensus 403 CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 403 CYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444445555555555555555544444444444555555555555544443
No 497
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.82 E-value=5.6e+02 Score=26.85 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHhhhhhhcCCHHHHHHHHccCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005481 357 SIVDMYLKCGLIDEATELFNEMP-----------VKNVVTWTVIITGYGKHGLAKEAVGLFRKML 410 (694)
Q Consensus 357 ~li~~y~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (694)
.|+..++-.|++..|.++++.+. .-.+.++--+.-+|...+++.+|++.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778888877777664 1234455566667777888888888877654
No 498
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=20.72 E-value=2.1e+02 Score=29.66 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=11.6
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 005481 459 CIVDSLGRAGRLDEAKNLIE 478 (694)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~ 478 (694)
-|+-.|.+.++.+-|+.-..
T Consensus 233 klv~CYL~~rkpdlALnh~h 252 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSH 252 (569)
T ss_pred HHHHhhhhcCCCchHHHHHh
Confidence 34556666666666665443
No 499
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=20.63 E-value=35 Score=23.87 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=9.5
Q ss_pred ccccCCchhhhhh
Q 005481 651 LRVCGDCHEFIKG 663 (694)
Q Consensus 651 l~~c~~~h~~~k~ 663 (694)
.-+|||||.--.+
T Consensus 20 iYiCgdC~~en~l 32 (62)
T KOG3507|consen 20 IYICGDCGQENTL 32 (62)
T ss_pred EEEeccccccccc
Confidence 3689999975443
No 500
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.57 E-value=2.1e+02 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC
Q 005481 256 SLVDFYVKCGCLVEARRVFDLIEQ 279 (694)
Q Consensus 256 ~li~~y~~~g~~~~A~~~f~~~~~ 279 (694)
.++.-|...|+.++|...+.++..
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCC
Confidence 344455555555555555555443
Done!