Query 005481
Match_columns 694
No_of_seqs 778 out of 4438
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 17:51:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005481.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1990-1993//hhsearch_pdb/005481hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 328.9 39.0 482 55-549 61-579 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 300.4 41.1 479 45-532 82-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 208.7 21.6 133 196-330 87-223 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 207.5 18.7 181 80-262 28-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 198.0 39.7 340 151-535 36-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 190.4 41.1 351 186-549 6-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 185.7 28.3 221 324-549 244-478 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 180.4 30.5 444 14-526 8-489 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 177.0 33.9 174 351-529 176-372 (450)
10 3fp2_A TPR repeat-containing p 1.0 1 1 176.0 31.6 421 79-550 26-492 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=328.91 Aligned_cols=482 Identities=8% Similarity=-0.086 Sum_probs=413.4
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCHHHHHH
Q ss_conf 98880699489999985258999431999999999299937999999996139999990209989998615699178999
Q 005481 55 DMYAKCGEMNGACAVFDKMLERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQ 134 (694)
Q Consensus 55 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 134 (694)
..+.+.|.+..+...|+.++.+++..|+.++..+.+.|++++|+.+|+.|.. ..|+..++..+..++...|+++.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 5665567667887754663378999999999999874583479999999996--08993579999999997476999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-------------------CCCCHHHHHHHHHHCCCH
Q ss_conf 9999999499987338999999988149958999997008999-------------------901099999999936991
Q 005481 135 IHGMCMKSGFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAK-------------------SLITWNAMIAGYVLAGYS 195 (694)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~ 195 (694)
++..+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99987335--4565089999999998866999999984248863223234334321123512589999988999983998
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHCCCCCCHH--HHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 38999999988779999930-59999999803599157--9999-99999919999851455989999999819998999
Q 005481 196 DKGLLLFRKMQEHGEIPDEF-TFTSTLKACGSLGSVGG--GTQI-HGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEAR 271 (694)
Q Consensus 196 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 271 (694)
++|++.|++|.+.+ |+.. .+..+...+...+.... ...+ +..+...+.. ....+++.++..|.+.|++++|.
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA--FLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH--HHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999999729--325699999998503461567899986577423443088--99999999999980731399999
Q ss_pred HHHHHCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99962598--9921599999999807997799999999875598667400698999974020189899999999866999
Q 005481 272 RVFDLIEQ--KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSG 349 (694)
Q Consensus 272 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 349 (694)
++|+++.+ ++..+|+.++..|.+.|++++|+.+|+++...+. .+..++..++..+...|+.+.|..++..+.+.. +
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-C
T ss_conf 99987643883099999999999984689999999999997295-537999999999998277779999999998518-3
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 982178789622330399999999971099---98862599999999814998999999999898999978999999999
Q 005481 350 LDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLS 426 (694)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 426 (694)
.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+.+|++|...+ +.+..++..++.
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 5479999999999983569999999999987297778999999999997577799999999999868-134389999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHH
Q ss_conf 987029599999999997533698889569999999977139969999999859-------99999--989999999999
Q 005481 427 ACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM-------PVKPS--IAIWQTLLSACR 497 (694)
Q Consensus 427 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~a~~ 497 (694)
+|.+.|++++|.++|+.+.+.. +.+...|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9998579999999999999848--88767999999999981899999999999998532345453549999999999999
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 6299689999999997388999603897976978439924999999999839
Q 005481 498 VHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 498 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (694)
..|++++|...++++++.+|+++..|..++.+|...|++++|.+.++++.+.
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 8047999999999999738997389999999999817899999999999720
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=300.36 Aligned_cols=479 Identities=7% Similarity=-0.026 Sum_probs=387.5
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
Q ss_conf 872369999998880699489999985258--999431999999999299937999999996139999990209989998
Q 005481 45 FDLMLNNDLIDMYAKCGEMNGACAVFDKML--ERNVVSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKA 122 (694)
Q Consensus 45 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 122 (694)
+++..++.++..|.+.|++++|..+|+++. .|+..+|..++..|.+.|++++|..+|+.+.. ..++..++..++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCHHHHHHHHHH
T ss_conf 8999999999999874583479999999996089935799999999974769999999998733--54565089999999
Q ss_pred HCCCCCHHHHHHHHHHHHHH---------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC---CCCHHH
Q ss_conf 61569917899999999994---------------999873389999999881499589999970089999---010999
Q 005481 123 SGVLSSVENGMQIHGMCMKS---------------GFEWNPVVGNSIIDMYSKCGRINEAARMFDVMPAKS---LITWNA 184 (694)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~ 184 (694)
+.+.|++++|..+++.+... +.+.+..+++.++..|.+.|++++|...|+++.+.+ ...|..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99886699999998424886322323433432112351258999998899998399899999999999729325699999
Q ss_pred HHHHHHHCCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999993699138999--9-999887799999305999999980359915799999999991999985145598999999
Q 005481 185 MIAGYVLAGYSDKGLL--L-FRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFY 261 (694)
Q Consensus 185 li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~y 261 (694)
+...+...+....+.. + +..+...+..+...+|..++..+.+.|+++.|.+++..+.+. + .+..+++.++..|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--E--KSSDLLLCKADTL 315 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--G--GCHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--C--CHHHHHHHHHHHH
T ss_conf 99850346156789998657742344308899999999999980731399999999876438--8--3099999999999
Q ss_pred HHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 981999899999962598---99215999999998079977999999998755986674006989999740201898999
Q 005481 262 VKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQ 338 (694)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 338 (694)
.+.|++++|..+|+++.+ .+..+|+.++.++.+.|++++|..+++++.... +.+..++..+...+...|+++.|..
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 984689999999999997295537999999999998277779999999998518-3547999999999998356999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999866999982178789622330399999999971099---988625999999998149989999999998989999
Q 005481 339 IHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVE 415 (694)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 415 (694)
++..+.+... .+...++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|...|+++.... +
T Consensus 395 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 395 YFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
T ss_conf 9999987297-7789999999999975777999999999998681343899999999998579999999999999848-8
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHH
Q ss_conf 789999999999870295999999999975336---98889--569999999977139969999999859-9999-9989
Q 005481 416 PDGVAYLAVLSACSHSGLVEESQEYFSRLCNDK---RMKPR--IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIAI 488 (694)
Q Consensus 416 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 488 (694)
.+..++..++..+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 87679999999999818999999999999985323454535499999999999998047999999999999738997389
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999962996899999999973889996038979769784
Q 005481 489 WQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHAD 532 (694)
Q Consensus 489 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 532 (694)
|..+...|...|++++|...++++++++|+++..+..++++|..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99999999981789999999999972088874899999998743
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=208.73 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 38999999988779999930599999998035991579999999999199998514559899999998199989999996
Q 005481 196 DKGLLLFRKMQEHGEIPDEFTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFD 275 (694)
Q Consensus 196 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 275 (694)
+.|.++|++|...|+.||..||++++.+|++.|+++.|.++++.|.+.|+. |+..+|++++.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--CCCCEEHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999998089998999999999998469778899999999972898--861110489999998889999999999
Q ss_pred HCC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 259----8992159999999980799779999999987559866740069899997402
Q 005481 276 LIE----QKSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGFVLSSMMGVFADF 330 (694)
Q Consensus 276 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 330 (694)
+|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+...
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 99862999999999999999853898999999999999948996999999999998307
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=207.48 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCC---------HHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 1999999999299937999999996139999990209989998615699---------1789999999999499987338
Q 005481 80 SWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSS---------VENGMQIHGMCMKSGFEWNPVV 150 (694)
Q Consensus 80 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 150 (694)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|+.|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999998814995899999700899----99010999999999369913899999998877999993059999999803
Q 005481 151 GNSIIDMYSKCGRINEAARMFDVMPA----KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPDEFTFTSTLKACGS 226 (694)
Q Consensus 151 ~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 226 (694)
|++|+.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 599157999999999919999851455989999999
Q 005481 227 LGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYV 262 (694)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~y~ 262 (694)
.|++++|.++++.|.+.+.. ++..+++.++..+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~--ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQ--VSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSS--BCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHH
T ss_conf 89899999999999994899--69999999999983
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=197.98 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=212.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCC---CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCC
Q ss_conf 99999998814995899999700899---9901099999999936991389999999887799999-3059999999803
Q 005481 151 GNSIIDMYSKCGRINEAARMFDVMPA---KSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHGEIPD-EFTFTSTLKACGS 226 (694)
Q Consensus 151 ~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 226 (694)
+..+...+...|++++|...++.... .+..+|..+...+.+.|++++|+..|+++.... |+ ..++..+..++..
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
T ss_conf 99999999986899999999999976197866999999999987799999999999998749--6539999999999998
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 59915799999999991999985145598999999981999899999962598---992159999999980799779999
Q 005481 227 LGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAME 303 (694)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 303 (694)
.|+++.+...+..+.+..+ .+...+..+...|...|++++|.+.|+++.. .+..+|..+...+...|++++|..
T Consensus 114 ~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNP---DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCT---TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 5899999999999997598---9689999999999984689999999999987298978999999999998599999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC---C
Q ss_conf 9999875598667400698999974020189899999999866999982178789622330399999999971099---9
Q 005481 304 LFRQLRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---V 380 (694)
Q Consensus 304 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 380 (694)
.|+++... .|+ +...+..+...+...|++++|...|++.. .
T Consensus 191 ~~~~al~~--~p~----------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 191 HFEKAVTL--DPN----------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHC--CCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99999855--988----------------------------------679999999999985789999999999985296
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 886259999999981499899999999989899997-8999999999987029599999999997533698889569999
Q 005481 381 KNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEP-DGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSC 459 (694)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 459 (694)
.+...|..+...+...|++++|+..|+++... .| +..++..+..++...|++++|...|+.+.+.. +.+...+..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 310 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNN 310 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_conf 87899999999999868899999999999864--99988999999999998699799999999998649--444999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999977139969999999859-99999-98999999999962996899999999973889996038979769784399
Q 005481 460 IVDSLGRAGRLDEAKNLIESM-PVKPS-IAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGS 535 (694)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 535 (694)
++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|++++|...+++++++.|+++..|..++.++...|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999848999999999999860987399997799999986888999999999986199978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=190.40 Aligned_cols=351 Identities=13% Similarity=0.098 Sum_probs=268.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999369913899999998877999993-05999999980359915799999999991999985145598999999981
Q 005481 186 IAGYVLAGYSDKGLLLFRKMQEHGEIPDE-FTFTSTLKACGSLGSVGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKC 264 (694)
Q Consensus 186 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 264 (694)
...+.+.|++++|...+..+.... |+. ..+..+...+...++++.+...+..+.+..+ .+...+..+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p---~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP---LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHC
T ss_conf 999987799999999999999849--78899999999999986899999999999976197---8669999999999877
Q ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 999899999962598---992159999999980799779999999987559866740-0698999974020189899999
Q 005481 265 GCLVEARRVFDLIEQ---KSVISWSSLILGYAQEENLAEAMELFRQLRERSLQVDGF-VLSSMMGVFADFALVEQGKQIH 340 (694)
Q Consensus 265 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~ 340 (694)
|++++|...|+++.. .+..+|..+...+...|++++|...|.++... .|+.. .+..+...+...|+++.|...+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999998749653999999999999858999999999999975--9896899999999999846899999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999866999982178789622330399999999971099---98862599999999814998999999999898999978
Q 005481 341 AYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPD 417 (694)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 417 (694)
..+.+... .+...+..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .|+
T Consensus 159 ~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 235 (388)
T 1w3b_A 159 LKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN 235 (388)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCC
T ss_conf 99987298-978999999999998599999999999998559886799999999999857899999999999852--968
Q ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHH
Q ss_conf -99999999998702959999999999753369888-9569999999977139969999999859--9999998999999
Q 005481 418 -GVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKP-RIEHYSCIVDSLGRAGRLDEAKNLIESM--PVKPSIAIWQTLL 493 (694)
Q Consensus 418 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 493 (694)
..++..+..++...|++++|...|+.+.+ ..| +...+..++..+.+.|++++|.+.++++ ..+++..+|..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 789999999999986889999999999986---49998899999999999869979999999999864944499999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99996299689999999997388999603897976978439924999999999839
Q 005481 494 SACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 494 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (694)
..+...|++++|...++++++..|+++..+..++.+|...|++++|...++.+.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99998489999999999998609873999977999999868889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=185.74 Aligned_cols=221 Identities=10% Similarity=-0.077 Sum_probs=138.8
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99974020189899999999866999982178789622330399999999971099---988625999999998149989
Q 005481 324 MGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAK 400 (694)
Q Consensus 324 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 400 (694)
...+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+++. ..+...|..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 99999878999999999999863864--8999999999998888999999999986138677899999999999807799
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999999898999978999999999987029599999999997533698889569999999977139969999999859
Q 005481 401 EAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPRIEHYSCIVDSLGRAGRLDEAKNLIESM 480 (694)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 480 (694)
+|...|+++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999998738-5028999999999998689999999999999875--467789999999998788999999999999
Q ss_pred ----CCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf ----99999----9899999999996---299689999999997388999603897976978439924999999999839
Q 005481 481 ----PVKPS----IAIWQTLLSACRV---HGDLELGREVGEILLRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSK 549 (694)
Q Consensus 481 ----~~~p~----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (694)
+..++ ...|..+...+.. .|+++.|...++++++..|+++..+..++.+|...|++++|...++.+.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 97612332178999999999999866332588899999999998758555899999999999825799999999999876
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=180.44 Aligned_cols=444 Identities=12% Similarity=0.012 Sum_probs=238.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC---CCCCCHHHHHHHHHH
Q ss_conf 79999988505899389999999999838898723699999988806994899999852589---994319999999992
Q 005481 14 RLADSLRCCSKNLLLDYGVQLHGALVKMGFSFDLMLNNDLIDMYAKCGEMNGACAVFDKMLE---RNVVSWTALMCGFLQ 90 (694)
Q Consensus 14 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 90 (694)
.+...-..+...|+++.|...+..+++.. |+...+..+...|.+.|++++|...|+.+.+ .+...|..+...+..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99998789998602789999999998559--2278998688999988549999999987760693789999988899998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHCCCHHHH
Q ss_conf 9993799999999613999999020998999861569917899999999994999873389999---9998814995899
Q 005481 91 NGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSI---IDMYSKCGRINEA 167 (694)
Q Consensus 91 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---l~~~~~~g~~~~A 167 (694)
.|++++|...|+.+...+. ++.......+..+........+.+.+..+...+..++....... ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 7668889999999995598-751137899999999999999999999899998766512677246788634478615899
Q ss_pred HHHHCCCCC---------C-CCCCHHHHHHHHHH---CCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999700899---------9-90109999999993---6991389999999887-----7999993059999999803599
Q 005481 168 ARMFDVMPA---------K-SLITWNAMIAGYVL---AGYSDKGLLLFRKMQE-----HGEIPDEFTFTSTLKACGSLGS 229 (694)
Q Consensus 168 ~~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~a~~~~~~ 229 (694)
...+..... + +...+......+.. .|++++|+..|.++.. ....|+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------- 233 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK----------- 233 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH-----------
T ss_pred HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_conf 999862587888887259958889999899998762332299999999999988665422381001148-----------
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 15799999999991999985145598999999981999899999962598--9921599999999807997799999999
Q 005481 230 VGGGTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQ--KSVISWSSLILGYAQEENLAEAMELFRQ 307 (694)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (694)
+ .+...+..+...|...|++++|...|+.+.+ ++...|..+...+...|++++|...+.+
T Consensus 234 ----------------~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 234 ----------------E--KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp ----------------H--HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred ----------------H--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf ----------------2--7899999999999987899999999999986386489999999999988889999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCHH
Q ss_conf 875598667400698999974020189899999999866999982178789622330399999999971099---98862
Q 005481 308 LRERSLQVDGFVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVV 384 (694)
Q Consensus 308 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 384 (694)
+... .. .+...+..+...|...|++++|...|++.. ..+..
T Consensus 296 ~~~~-----------------------------------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 339 (514)
T 2gw1_A 296 ALKL-----------------------------------DS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339 (514)
T ss_dssp HHTT-----------------------------------CT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH
T ss_pred HHHC-----------------------------------CC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHH
T ss_conf 8613-----------------------------------86-77899999999999807799999999999873850289
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC----HHHHHHH
Q ss_conf 599999999814998999999999898999978999999999987029599999999997533698889----5699999
Q 005481 385 TWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRMKPR----IEHYSCI 460 (694)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 460 (694)
.|..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.....-.+. ...+..+
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999998689999999999999875-46778999999999878899999999999997612332178999999999
Q ss_pred HHHHHH---CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 999771---39969999999859-9999-998999999999962996899999999973889996038979
Q 005481 461 VDSLGR---AGRLDEAKNLIESM-PVKP-SIAIWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMM 526 (694)
Q Consensus 461 i~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 526 (694)
+..+.. .|++++|...++++ ...| +...|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99986633258889999999999875855589999999999982579999999999987661468899999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=177.05 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--
Q ss_conf 82178789622330399999999971099---9886259999999981499899999999989899997899-99999--
Q 005481 351 DTSVSNSIVDMYLKCGLIDEATELFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGV-AYLAV-- 424 (694)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l-- 424 (694)
+..++..++.+|.+.|++++|...|+++. ..+...|..++..|...|++++|+..|+++... .|+.. .+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_conf 76999999999987799999999999999868898799999999999759999999999999875--9980899999999
Q ss_pred ----------HHHHHCCCCHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHH
Q ss_conf ----------99987029599999999997533698889-----569999999977139969999999859-9999-998
Q 005481 425 ----------LSACSHSGLVEESQEYFSRLCNDKRMKPR-----IEHYSCIVDSLGRAGRLDEAKNLIESM-PVKP-SIA 487 (694)
Q Consensus 425 ----------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 487 (694)
...+...|++++|...|+.+... .|+ ..++..++.++.+.|++++|...++++ ...| +..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 999999999999998717999999999999850---87336899999999999999878899999999999884845489
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 999999999962996899999999973889996038979769
Q 005481 488 IWQTLLSACRVHGDLELGREVGEILLRLDGDNPVNYVMMSNI 529 (694)
Q Consensus 488 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 529 (694)
.|..+..+|...|++++|...+++++++.|+++..+..++.+
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999870379999999999988593529999999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=175.98 Aligned_cols=421 Identities=10% Similarity=-0.015 Sum_probs=243.3
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 31999999999299937999999996139999990209989998615699178999999999949998733899999998
Q 005481 79 VSWTALMCGFLQNGNAKACLSLFCQMGSSSVKPNEFTLSTNIKASGVLSSVENGMQIHGMCMKSGFEWNPVVGNSIIDMY 158 (694)
Q Consensus 79 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 158 (694)
..|..+...+.+.|++++|+..|+.+.... +.+...+..+..++...|+++.|...+..+++.. +.+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 999999999998642999999999998638-9984899999999998689999999999998609-86289999999999
Q ss_pred HHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 814995899999700899990109999999993699138999999988779------99993059999999803599157
Q 005481 159 SKCGRINEAARMFDVMPAKSLITWNAMIAGYVLAGYSDKGLLLFRKMQEHG------EIPDEFTFTSTLKACGSLGSVGG 232 (694)
Q Consensus 159 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~ 232 (694)
...|++++|...|+.+ ..+....+..+..+...+....|...+..+.... ..|+.....
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-------------- 168 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA-------------- 168 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH--------------
T ss_pred HHCCCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH--------------
T ss_conf 9838999999999998-6487878588999998778988999999999747454543450675799--------------
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHH---HHHHHHHHHHH--------CCCHHHH
Q ss_conf 999999999919999851455989999999819998999999625989921---59999999980--------7997799
Q 005481 233 GTQIHGFLITSGFPYSVKTVIAGSLVDFYVKCGCLVEARRVFDLIEQKSVI---SWSSLILGYAQ--------EENLAEA 301 (694)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A 301 (694)
.|....+.+.+...+......+.. .+..+...+.. .|++++|
T Consensus 169 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 169 ---------------------------SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp ---------------------------HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------------------99974474999998763256461789999999878876402068888799999
Q ss_pred HHHHHHHHHCCCCCCC--------CCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9999998755986674--------00698999974020189899999999866999982178789622330399999999
Q 005481 302 MELFRQLRERSLQVDG--------FVLSSMMGVFADFALVEQGKQIHAYAAKVPSGLDTSVSNSIVDMYLKCGLIDEATE 373 (694)
Q Consensus 302 ~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 373 (694)
..+|+++... .|+. .++..+...+...|+++.|...+..+.+.... ...+..+...|...|++++|..
T Consensus 222 ~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999987--87740445999999999999987545578999999999866987--4699999999998037999999
Q ss_pred HHCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 971099---98862599999999814998999999999898999978999999999987029599999999997533698
Q 005481 374 LFNEMP---VKNVVTWTVIITGYGKHGLAKEAVGLFRKMLLDDVEPDGVAYLAVLSACSHSGLVEESQEYFSRLCNDKRM 450 (694)
Q Consensus 374 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 450 (694)
.|+++. ..+...|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 374 (537)
T 3fp2_A 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-- 374 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
T ss_conf 9999754599987999999999986689999999999999859-9977999999999998477999999999998739--
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Q ss_conf 889569999999977139969999999859----9999----998999999999962----------9968999999999
Q 005481 451 KPRIEHYSCIVDSLGRAGRLDEAKNLIESM----PVKP----SIAIWQTLLSACRVH----------GDLELGREVGEIL 512 (694)
Q Consensus 451 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~a~~~~----------g~~~~a~~~~~~~ 512 (694)
+.+...+..+...+...|++++|...++++ +..+ ....+..+...+... |++++|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99859999999999883788999999999987097624468889999988999999764010022475799999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 73889996038979769784399249999999998399
Q 005481 513 LRLDGDNPVNYVMMSNIHADAGSWNECERLRKLARSKG 550 (694)
Q Consensus 513 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 550 (694)
++..|+++..+..++.+|...|++++|.+.++...+..
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 97499978999999999998514999999999999868
Done!