BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005482
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
Length = 130
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 125 ASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILA--KDVHGEVWKFRHI 182
A F K +T SD +P++ AE FP S+ V+ +L +DV+G+VW+FR+
Sbjct: 12 ALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLP--SSNVSVKGVLLNFEDVNGKVWRFRYS 69
Query: 183 YRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGD 220
Y + + ++LT GWS FV +K L AGD + F R+ D
Sbjct: 70 YWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQD 107
>pdb|3EGW|A Chain A, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 1244
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 16/141 (11%)
Query: 516 MGNPTQSFKDNIEVKT--PHIILFGQLILPQQNSSQSCSGDTIVNSLSDGNPEKTAISSD 573
+ NP+Q F D + T P +++ + + D + + NPE ++ +
Sbjct: 319 LDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVAALGQENNPEWKTVAFN 378
Query: 574 GSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLGSYE 633
+G V NG + G W +K LE K E+E L LS+LGS +
Sbjct: 379 TNGEMVAPNGSI------GFRWG---EKGKWNLEQRDGKTGEETE-----LQLSLLGSQD 424
Query: 634 ELYGKLANMFGIESAEMFSNV 654
E+ FG + E F+ V
Sbjct: 425 EIAEVGFPYFGGDGTEHFNKV 445
>pdb|1YEL|A Chain A, Structure Of The Hypothetical Arabidopsis Thaliana Protein
At1g16640.1
Length = 104
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 157 DYSAEPPVQTILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL 214
+Y P T+ D G W R RG + LT GW NFV L G + F+
Sbjct: 32 EYFPAPFPITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNNLEDGKYLQFI 87
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 516 MGNPTQSFKDNIEVKTPHIILFGQLILPQQN----SSQSCSGDTIVNSLS-DGNPEKTAI 570
+ NP+Q F D + T +L ++L +++ + + +V++L + NPE +
Sbjct: 320 LDNPSQYFTDYVRRYTDMPML---VMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTV 376
Query: 571 SSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLG 630
+ + +G V NG + G W +K LE K E+E L LS+LG
Sbjct: 377 AFNTNGEMVAPNGSI------GFRWG---EKGKWNLEQRDGKTGEETE-----LQLSLLG 422
Query: 631 SYEELYGKLANMFGIESAEMFSNV 654
S +E+ FG + E F+ V
Sbjct: 423 SQDEIAEVGFPYFGGDGTEHFNKV 446
>pdb|1Q16|A Chain A, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
Length = 1247
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 516 MGNPTQSFKDNIEVKTPHIILFGQLILPQQN----SSQSCSGDTIVNSLS-DGNPEKTAI 570
+ NP+Q F D + T +L ++L +++ + + +V++L + NPE +
Sbjct: 320 LDNPSQYFTDYVRRYTDMPML---VMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTV 376
Query: 571 SSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLG 630
+ + +G V NG + G W +K LE K E+E L LS+LG
Sbjct: 377 AFNTNGEMVAPNGSI------GFRWG---EKGKWNLEQRDGKTGEETE-----LQLSLLG 422
Query: 631 SYEELYGKLANMFGIESAEMFSNV 654
S +E+ FG + E F+ V
Sbjct: 423 SQDEIAEVGFPYFGGDGTEHFNKV 446
>pdb|1R27|A Chain A, Crystal Structure Of Nargh Complex
pdb|1R27|C Chain C, Crystal Structure Of Nargh Complex
pdb|1SIW|A Chain A, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y4Z|A Chain A, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
pdb|1Y5I|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
Length = 1246
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 516 MGNPTQSFKDNIEVKTPHIILFGQLILPQQN----SSQSCSGDTIVNSLS-DGNPEKTAI 570
+ NP+Q F D + T +L ++L +++ + + +V++L + NPE +
Sbjct: 319 LDNPSQYFTDYVRRYTDMPML---VMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTV 375
Query: 571 SSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLG 630
+ + +G V NG + G W +K LE K E+E L LS+LG
Sbjct: 376 AFNTNGEMVAPNGSI------GFRWG---EKGKWNLEQRDGKTGEETE-----LQLSLLG 421
Query: 631 SYEELYGKLANMFGIESAEMFSNV 654
S +E+ FG + E F+ V
Sbjct: 422 SQDEIAEVGFPYFGGDGTEHFNKV 445
>pdb|3IR6|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49s
Length = 1247
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 516 MGNPTQSFKDNIEVKTPHIILFGQLILPQQN----SSQSCSGDTIVNSLS-DGNPEKTAI 570
+ NP+Q F D + T +L ++L +++ + + +V++L + NPE +
Sbjct: 320 LDNPSQYFTDYVRRYTDMPML---VMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTV 376
Query: 571 SSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLG 630
+ + +G V NG + G W +K LE K E+E L LS+LG
Sbjct: 377 AFNTNGEMVAPNGSI------GFRWG---EKGKWNLEQRDGKTGEETE-----LQLSLLG 422
Query: 631 SYEELYGKLANMFGIESAEMFSNV 654
S +E+ FG + E F+ V
Sbjct: 423 SQDEIAEVGFPYFGGDGTEHFNKV 446
>pdb|3IR7|A Chain A, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 1247
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 516 MGNPTQSFKDNIEVKTPHIILFGQLILPQQN----SSQSCSGDTIVNSLS-DGNPEKTAI 570
+ NP+Q F D + T +L ++L +++ + + +V++L + NPE +
Sbjct: 320 LDNPSQYFTDYVRRYTDMPML---VMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTV 376
Query: 571 SSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLG 630
+ + +G V NG + G W +K LE K E+E L LS+LG
Sbjct: 377 AFNTNGEMVAPNGSI------GFRWG---EKGKWNLEQRDGKTGEETE-----LQLSLLG 422
Query: 631 SYEELYGKLANMFGIESAEMFSNV 654
S +E+ FG + E F+ V
Sbjct: 423 SQDEIAEVGFPYFGGDGTEHFNKV 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,796,294
Number of Sequences: 62578
Number of extensions: 808763
Number of successful extensions: 1314
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 20
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)