Query 005482
Match_columns 694
No_of_seqs 334 out of 838
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:07:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005482.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1990-1993//hhsearch_pdb/005482hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 206.6 13.7 114 119-232 6-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 139.9 11.2 98 123-230 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 111.8 10.3 96 123-229 7-102 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 36.8 5.9 93 123-216 17-123 (404)
5 1wmh_B Partitioning defective- 1.0 1 1 30.8 7.7 75 606-684 4-84 (86)
6 1vd2_A Protein kinase C, IOTA 1.0 1 1 30.1 6.8 59 608-669 6-64 (89)
7 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 24.8 6.1 60 608-669 5-80 (102)
8 1oey_A P67-PHOX, neutrophil cy 1.0 1 1 24.4 7.1 73 609-686 6-81 (83)
9 1q1o_A Cell division control p 1.0 1 1 23.8 6.5 76 608-683 5-95 (98)
10 2ktr_A Sequestosome-1; autopha 1.0 1 1 23.7 6.5 63 605-669 17-95 (117)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=206.56 Aligned_cols=114 Identities=31% Similarity=0.515 Sum_probs=104.4
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHH
Q ss_conf 99985607999555244899993687234220019999989999833899986699849999999299984033247011
Q 005482 119 ESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSN 198 (694)
Q Consensus 119 ~~~~~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rr~lLTtGWs~ 198 (694)
...++.++|.|+||+|||+++++|+||+++|+.|||+++..+..+.+.|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
T ss_conf 89998624999985577189777996789999668865444578838999995899999999999789996388377488
Q ss_pred HHCCCCCCCCCEEEEEECCC--CCEEEEEEECCCCC
Q ss_conf 42026886798999997159--95899999813689
Q 005482 199 FVNQKKLVAGDSIVFLRAEN--GDLCVGIRRAKKGG 232 (694)
Q Consensus 199 FV~~K~L~aGD~VvF~R~~n--G~l~VGIRRa~~~~ 232 (694)
||++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=139.94 Aligned_cols=98 Identities=23% Similarity=0.312 Sum_probs=86.9
Q ss_pred CCEEEEEECCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 56079995552448999936872342200199999899998338999866998499999992999840332470114202
Q 005482 123 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQ 202 (694)
Q Consensus 123 ~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rr~lLTtGWs~FV~~ 202 (694)
..++|.|+||+||+.++..|.||+.+++.+||..+ +.+.++|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHH
T ss_conf 99989999785661898679909999997488888-------37999979-9478989999589--07877763898887
Q ss_pred CCCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 68867989999971599--58999998136
Q 005482 203 KKLVAGDSIVFLRAENG--DLCVGIRRAKK 230 (694)
Q Consensus 203 K~L~aGD~VvF~R~~nG--~l~VGIRRa~~ 230 (694)
++|++||+|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 599989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=111.75 Aligned_cols=96 Identities=24% Similarity=0.407 Sum_probs=82.6
Q ss_pred CCEEEEEECCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 56079995552448999936872342200199999899998338999866998499999992999840332470114202
Q 005482 123 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQ 202 (694)
Q Consensus 123 ~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rr~lLTtGWs~FV~~ 202 (694)
..+.|.|+|+++|... +|.||+.+++.+.+.+. ..+.++|..|++|++++.+++ .+..|+.||..||++
T Consensus 7 ~~p~F~K~l~~~~~~~--~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHHTT--CEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCCCC--EEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHH
T ss_conf 8987899987777553--18889999986486699-------889999799999999999989--949986294999997
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 688679899999715995899999813
Q 005482 203 KKLVAGDSIVFLRAENGDLCVGIRRAK 229 (694)
Q Consensus 203 K~L~aGD~VvF~R~~nG~l~VGIRRa~ 229 (694)
++|++||.++|....+..+.|.|.+..
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 599989899999858976999997898
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=36.83 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCEEEEEECCCCCCCCC----CCEEECCCCHHHCCCCCCC-CCCCCCEEEEEE--ECCCCEEEEEEEEEC------CCCC
Q ss_conf 56079995552448999----9368723422001999998-999983389998--669984999999929------9984
Q 005482 123 KPASFAKTLTQSDANNG----GGFSVPRYCAETIFPRLDY-SAEPPVQTILAK--DVHGEVWKFRHIYRG------TPRR 189 (694)
Q Consensus 123 ~~~~F~K~LT~SDv~~~----grlsVPk~~Ae~~FP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~yrg------~~rr 189 (694)
....|+|.|++.|++.. .++.+|+......||.|+. ....|.+.+.+. |-..-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 03324701-1420268867989999971
Q 005482 190 HLLTTGWS-NFVNQKKLVAGDSIVFLRA 216 (694)
Q Consensus 190 ~lLTtGWs-~FV~~K~L~aGD~VvF~R~ 216 (694)
|.||. |. .+.-.....+||.++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=30.82 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCEEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEECCCCCHHHHH---HCCE---
Q ss_conf 7110589997330000013679869999999999854199898874028998099996872887847788---3010---
Q 005482 606 LEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSVKHTGDEPFSEFL---KTAR--- 679 (694)
Q Consensus 606 ~~~~~~KV~meG~~vgR~vDL~~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGd~mlvGD~PW~~F~---~~vk--- 679 (694)
+..-.||..-+.+--=-.+|-....+|++|+..++++|.+.+ ....+.|+|.+||++-+-++ ++|. .++|
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~--~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~plL 79 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG--LDVLLGYTDAHGDLLPLTND--DSLHRALASGPPPL 79 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT--CCCEEEEECTTSCEEECCSH--HHHHHHTTSSSSCE
T ss_pred CCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCC--CCEEEEEECCCCCEEEECCH--HHHHHHHHHCCCCE
T ss_conf 887999863388046767268878788999999999757899--87899998899997614588--99999997288747
Q ss_pred EEEEE
Q ss_conf 68995
Q 005482 680 RLTIL 684 (694)
Q Consensus 680 rl~I~ 684 (694)
||.|-
T Consensus 80 Rl~Iq 84 (86)
T 1wmh_B 80 RLLVQ 84 (86)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99997
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=30.14 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=44.9
Q ss_pred EEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEECCCC
Q ss_conf 10589997330000013679869999999999854199898874028998099996872887
Q 005482 608 MGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSVKHTGDE 669 (694)
Q Consensus 608 ~~~~KV~meG~~vgR~vDL~~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGd~mlvGD~ 669 (694)
..-+|++.+|..+-=.++. --+|++|+.++.++|.+.. +-...+-|.|.|||+.-+-.+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCCEECCSH
T ss_pred EEEEEEEECCEEEEEECCC--CCCHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCCCCCH
T ss_conf 1899999478599998799--9899999999999968898-982799999899795033488
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=24.83 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=41.4
Q ss_pred EEEEEEEECCC----EEECCCCCC-----------CCCCHHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCEEECCCC
Q ss_conf 10589997330----000013679-----------86999999999985419-9898874028998099996872887
Q 005482 608 MGHCKVFMESE----DVGRTLDLS-----------VLGSYEELYGKLANMFG-IESAEMFSNVLYRDAAGSVKHTGDE 669 (694)
Q Consensus 608 ~~~~KV~meG~----~vgR~vDL~-----------~~~sY~eL~~~L~~MF~-i~~~~l~~~v~Y~D~eGd~mlvGD~ 669 (694)
+..+|++..|. .--|..-|. .-.+|++|+..+.++|. +.+ ....+.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~--~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECSH
T ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCEEEEEECCCCCEEEECCH
T ss_conf 69999998167777872699883367775422244666699999999997544579--83899999899998976488
No 8
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=24.44 Aligned_cols=73 Identities=10% Similarity=0.156 Sum_probs=57.4
Q ss_pred EEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEE-CCCCEEECCCCCHHHHHHCCE--EEEEEC
Q ss_conf 05899973300000136798699999999998541998988740289980-999968728878477883010--689953
Q 005482 609 GHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRD-AAGSVKHTGDEPFSEFLKTAR--RLTILT 685 (694)
Q Consensus 609 ~~~KV~meG~~vgR~vDL~~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D-~eGd~mlvGD~PW~~F~~~vk--rl~I~~ 685 (694)
.-+||+-+ +--+|....=-+|.+|...|.+-+.+.+++ .++-|.| .+|.+++.+|+-++.-...|+ ||+++-
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~--~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL~C 80 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH--TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWC 80 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG--CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEEEE
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEEEECCCCCCEECCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 89999999---999999779999899999999985899641--4999607878970135757799999752388089998
Q ss_pred C
Q ss_conf 8
Q 005482 686 D 686 (694)
Q Consensus 686 ~ 686 (694)
.
T Consensus 81 ~ 81 (83)
T 1oey_A 81 E 81 (83)
T ss_dssp C
T ss_pred E
T ss_conf 2
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=23.85 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=54.3
Q ss_pred EEEEEEEECCC------EEECCCCCCCCCCHHHHHHHHHHHHCCC-CCCC--CEEEEEEECCCCEEECCCC-CHHHHHHC
Q ss_conf 10589997330------0000136798699999999998541998-9887--4028998099996872887-84778830
Q 005482 608 MGHCKVFMESE------DVGRTLDLSVLGSYEELYGKLANMFGIE-SAEM--FSNVLYRDAAGSVKHTGDE-PFSEFLKT 677 (694)
Q Consensus 608 ~~~~KV~meG~------~vgR~vDL~~~~sY~eL~~~L~~MF~i~-~~~l--~~~v~Y~D~eGd~mlvGD~-PW~~F~~~ 677 (694)
.-.+||+-++. .=-++|=...--+|++|+.++.+-|.+. +.+. ..++-|+|.+||+...+++ =|++-+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCHHHHHHHHHH
T ss_conf 18999993576566666867999966999899999999999767865454650479999699998877288999999999
Q ss_pred C-----EEEEE
Q ss_conf 1-----06899
Q 005482 678 A-----RRLTI 683 (694)
Q Consensus 678 v-----krl~I 683 (694)
+ ++|.|
T Consensus 85 ~~e~~~~~l~I 95 (98)
T 1q1o_A 85 LAENNEKFLNI 95 (98)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHHHCCEEEE
T ss_conf 77510570899
No 10
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=23.72 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=43.9
Q ss_pred CCCEEEEEEEECC-----CEEEC-CCCC---------CCCCCHHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCEEECCC
Q ss_conf 9711058999733-----00000-1367---------986999999999985419-989887402899809999687288
Q 005482 605 GLEMGHCKVFMES-----EDVGR-TLDL---------SVLGSYEELYGKLANMFG-IESAEMFSNVLYRDAAGSVKHTGD 668 (694)
Q Consensus 605 ~~~~~~~KV~meG-----~~vgR-~vDL---------~~~~sY~eL~~~L~~MF~-i~~~~l~~~v~Y~D~eGd~mlvGD 668 (694)
......+|++..| ..|-| ++|- ..-.+|++|...+.++|. +.+. ...+.|.|.|||+.-+..
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~--~f~l~YkDEdGDlItISs 94 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG--GFQAHYRAERGDLVAFSS 94 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS--CEEEEEECTTCCEEEECS
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCEEEECC
T ss_conf 445289999980677788727998842677743112456777999999999973455898--389999989999897638
Q ss_pred C
Q ss_conf 7
Q 005482 669 E 669 (694)
Q Consensus 669 ~ 669 (694)
+
T Consensus 95 D 95 (117)
T 2ktr_A 95 D 95 (117)
T ss_dssp H
T ss_pred H
T ss_conf 8
Done!