BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005483
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BW3|A Chain A, Three-Dimensional Structure Of The Hermes Dna Transposase
Length = 534
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 570 HSQDLSLISIGDGLSDFEVYISEDTSGQPM---RSELDQYLEEFLLPRTQDFDILDWWRL 626
HS+D+S S F ++++ S +P E + Y +E ++ ++DF + +WW L
Sbjct: 419 HSKDISTTSF------FFPQLTQNNSREPPVCPSDEFEFYRKEIVI-LSEDFKVXEWWNL 471
Query: 627 NQAKYPTLSRMASDILSIPFSTVPTDSVFDTVSKKIDSYRSSLRPVTLEALI 678
N KYP LS++A +LSIP S+ ++ F I R+ + T+++L+
Sbjct: 472 NSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLL 523
>pdb|1EA3|A Chain A, Influenza Virus M1 Protein
pdb|1EA3|B Chain B, Influenza Virus M1 Protein
Length = 164
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 583 LSDFEVYISEDTSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDIL 642
L++ E Y+ P+++E+ Q LE+ + D ++L W + P LS + IL
Sbjct: 4 LTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEVLMEWLKTR---PILSPLTKGIL 60
Query: 643 SIPFS-TVPTD 652
F+ TVP++
Sbjct: 61 GFVFTLTVPSE 71
>pdb|1AA7|A Chain A, Influenza Virus Matrix Protein Crystal Structure At Ph 4.0
pdb|1AA7|B Chain B, Influenza Virus Matrix Protein Crystal Structure At Ph 4.0
Length = 158
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 583 LSDFEVYISEDTSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDIL 642
L++ E Y+ P+++E+ Q LE+ + D ++L W + P LS + IL
Sbjct: 4 LTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEVLMEWLKTR---PILSPLTKGIL 60
Query: 643 SIPFS-TVPTD 652
F+ TVP++
Sbjct: 61 GFVFTLTVPSE 71
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 583 LSDFEVYISEDTSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDIL 642
L++ E Y+ P+++E+ Q LE+ + D ++L W + P LS + IL
Sbjct: 288 LTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEVLMEWLKTR---PILSPLTKGIL 344
Query: 643 SIPFS-TVPTD 652
F+ TVP++
Sbjct: 345 GFVFTLTVPSE 355
>pdb|2Z16|A Chain A, Crystal Structure Of Matrix Protein 1 From Influenza A
Virus ACROWKYOTOT12004(H5N1)
pdb|2Z16|B Chain B, Crystal Structure Of Matrix Protein 1 From Influenza A
Virus ACROWKYOTOT12004(H5N1)
Length = 165
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 583 LSDFEVYISEDTSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDIL 642
L++ E Y+ P+++E+ Q LE+ + D + L W + P LS + IL
Sbjct: 11 LTEVETYVLSIIPSGPLKAEIAQKLEDVFAGKNTDLEALMEWLKTR---PILSPLTKGIL 67
Query: 643 SIPFS-TVPTD 652
F+ TVP++
Sbjct: 68 GFVFTLTVPSE 78
>pdb|3MD2|A Chain A, Crystal Structure Of The Matrix Protein 1 From Influenza A
V (ACALIFORNIA042009 (H1N1))
pdb|3MD2|B Chain B, Crystal Structure Of The Matrix Protein 1 From Influenza A
V (ACALIFORNIA042009 (H1N1))
pdb|3MD2|C Chain C, Crystal Structure Of The Matrix Protein 1 From Influenza A
V (ACALIFORNIA042009 (H1N1))
pdb|3MD2|D Chain D, Crystal Structure Of The Matrix Protein 1 From Influenza A
V (ACALIFORNIA042009 (H1N1))
Length = 157
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 583 LSDFEVYISEDTSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDIL 642
L++ E Y+ P+++E+ Q LE + D + L W + P LS + IL
Sbjct: 3 LTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTR---PILSPLTKGIL 59
Query: 643 SIPFS-TVPTD 652
F+ TVP++
Sbjct: 60 GFVFTLTVPSE 70
>pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OX4|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
Length = 383
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 187 REKQRLLNFISGIHGRVNLALDLWSSNQSVGYAVLTGHFIDGDWNLHHRVLNVVMVPSPD 246
RE F++G + +N S+GY H + G +NL H V N V++P
Sbjct: 240 REAMAYAQFLAG----------MAFNNASLGYVHAMAHQLGGYYNLPHGVCNAVLLPHV- 288
Query: 247 SDVAFNQALASCLSDWRLENKLLTLTLD 274
+A+N ++ + RL++ + + LD
Sbjct: 289 --LAYNASVVA----GRLKDVGVAMGLD 310
>pdb|3TLY|A Chain A, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
pdb|3TLY|B Chain B, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
Length = 371
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 263 RLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLI-KGNCYARVI-SRLAQDAL 320
R ++ + T TL +S+E+IN N L K + NC G RVI LA L
Sbjct: 192 RKQSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGGNLA--TL 249
Query: 321 GAIW--ETVDKIR-ASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYH-- 375
IW E + +IR + +++ S R + + + LF K N +
Sbjct: 250 TGIWGSEWMPEIRNGDILFIEDS------------RASIATVERLF--SMLKLNRVFDKV 295
Query: 376 --MLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
+++ HEL F C + Y++ T +D KQ+ +L
Sbjct: 296 SAIILGKHEL---FDCAGSKRRPYEVLTEVLDG-KQIPVL 331
>pdb|3TLA|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLA|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLE|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
pdb|3TLE|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
Length = 371
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 263 RLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLI-KGNCYARVISRLAQDALG 321
R ++ + T TL +S+E+IN N L K + NC G RVI + L
Sbjct: 192 RKQSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGG-NLNTLT 250
Query: 322 AIW--ETVDKIR-ASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYH--- 375
IW E + +IR + +++ S R + + + LF K N +
Sbjct: 251 GIWGSEWMPEIRNGDILFIEDS------------RKSIATVERLF--SMLKLNRVFDKVS 296
Query: 376 -MLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
+++ HEL F C + Y++ T +D KQ+ +L
Sbjct: 297 AIILGKHEL---FDCAGSKRRPYEVLTEVLDG-KQIPVL 331
>pdb|3TLC|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
pdb|3TLC|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
Length = 371
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 263 RLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLI-KGNCYARVISRLAQDALG 321
R ++ + T TL +S+E+IN N L K + NC G RVI + L
Sbjct: 192 RKQSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGG-NLNTLT 250
Query: 322 AIW--ETVDKIR-ASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYH--- 375
IW E + +IR + +++ S R + + + LF K N +
Sbjct: 251 GIWGSEWMPEIRNGDILFIEDS------------RKSIATVERLF--SMLKLNRVFDKVS 296
Query: 376 -MLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
+++ HEL F C + Y++ T +D KQ+ +L
Sbjct: 297 AIILGKHEL---FDCAGSKRRPYEVLTEVLDG-KQIPVL 331
>pdb|3TLZ|A Chain A, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
pdb|3TLZ|B Chain B, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
Length = 371
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 263 RLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLI-KGNCYARVISRLAQDALG 321
R ++ + T TL +S+E+IN N L K + NC G RVI + L
Sbjct: 192 RKQSGIYTYTLPEKWSDESINFNENKILRPKKLYKNNCAFYGSGKVEGRVIGG-NLNTLT 250
Query: 322 AIW--ETVDKIR-ASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYH--- 375
IW E + +IR + +++ S R + + + LF K N +
Sbjct: 251 GIWGSEWMPEIRNGDILFIEDS------------RKSIATVERLF--SMLKLNRVFDKVS 296
Query: 376 -MLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
+++ HEL F C + Y++ T +D KQ+ +L
Sbjct: 297 AIILGKHEL---FDCAGSKRRPYEVLTEVLDG-KQIPVL 331
>pdb|2JMS|A Chain A, Nmr Structure Of En-6 Pheromone From The Antarctic
Ciliate Euplotes Nobilii
Length = 63
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 43 WDYFTVETVDAGCTRACCNQC 63
WDY T V++ C CCN C
Sbjct: 22 WDYCTNYIVNSSCGEICCNDC 42
>pdb|3TLG|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 27/159 (16%)
Query: 263 RLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLI-KGNCYARVISRLAQDALG 321
R ++ + T TL +S+E+IN N L K + NC G RVI + L
Sbjct: 192 RKQSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGG-NLNTLT 250
Query: 322 AIW--ETVDKIR-ASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYH--- 375
IW E +IR + +++ S R + + + LF K N +
Sbjct: 251 GIWGSEWXPEIRNGDILFIEDS------------RKSIATVERLF--SXLKLNRVFDKVS 296
Query: 376 -MLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
+++ HEL F C + Y++ T +D KQ+ +L
Sbjct: 297 AIILGKHEL---FDCAGSKRRPYEVLTEVLDG-KQIPVL 331
>pdb|3TLG|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 27/159 (16%)
Query: 263 RLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLI-KGNCYARVISRLAQDALG 321
R ++ + T TL +S+E+IN N L K + NC G RVI + L
Sbjct: 192 RKQSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGG-NLNTLT 250
Query: 322 AIW--ETVDKIR-ASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYH--- 375
IW E +IR + +++ S R + + + LF K N +
Sbjct: 251 GIWGSEWXPEIRNGDILFIEDS------------RKSIATVERLF--SXLKLNRVFDKVS 296
Query: 376 -MLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
+++ HEL F C + Y++ T +D KQ+ +L
Sbjct: 297 AIILGKHEL---FDCAGSKRRPYEVLTEVLDG-KQIPVL 331
>pdb|3TLB|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
pdb|3TLB|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
Length = 371
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 27/159 (16%)
Query: 263 RLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLI-KGNCYARVISRLAQDALG 321
R + + T TL +S+E+IN N L K + NC G RVI + L
Sbjct: 192 RKQAGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGG-NLNTLT 250
Query: 322 AIW--ETVDKIR-ASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYH--- 375
IW E + +IR + +++ S R + + + LF K N +
Sbjct: 251 GIWGSEWMPEIRNGDILFIEDS------------RKSIATVERLF--SMLKLNRVFDKVS 296
Query: 376 -MLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
+++ HEL F C + Y++ T +D KQ+ +L
Sbjct: 297 AIILGKHEL---FDCAGSKRRPYEVLTEVLDG-KQIPVL 331
>pdb|2FJC|A Chain A, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|B Chain B, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|C Chain C, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|D Chain D, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|E Chain E, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|F Chain F, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|G Chain G, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|H Chain H, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|I Chain I, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|J Chain J, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|K Chain K, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|L Chain L, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|M Chain M, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|N Chain N, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|O Chain O, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|P Chain P, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
Length = 156
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 520 LHELFHEYLVQMLALPDTFMDEGLEVIPKSEASREETLHAGNIEEGTPQE 569
+HEL EY V + DT + L++ ++ AS E L I E T +E
Sbjct: 47 VHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKE 96
>pdb|1JIG|A Chain A, Dlp-2 From Bacillus Anthracis
pdb|1JIG|B Chain B, Dlp-2 From Bacillus Anthracis
pdb|1JIG|C Chain C, Dlp-2 From Bacillus Anthracis
pdb|1JIG|D Chain D, Dlp-2 From Bacillus Anthracis
Length = 146
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 520 LHELFHEYLVQMLALPDTFMDEGLEVIPKSEASREETLHAGNIEEGTPQEHSQDLSLISI 579
LHE F E+ + D + L + K A+ +E L ++ EGT +E ++++ +
Sbjct: 39 LHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSSVNEGTSKESAEEM----V 94
Query: 580 GDGLSDFEVYISEDTSGQPMRSE 602
++D+ I E G + E
Sbjct: 95 QTLVNDYSALIQELKEGMEVAGE 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,087,407
Number of Sequences: 62578
Number of extensions: 882180
Number of successful extensions: 1855
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1850
Number of HSP's gapped (non-prelim): 20
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)