BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005484
         (694 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8S2G0|ISPE_ORYSJ 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic
           OS=Oryza sativa subsp. japonica GN=ISPE PE=2 SV=1
          Length = 401

 Score = 34.7 bits (78), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 558 DATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDL 617
           DA  ++L  P     A  V+P+LK    R+     +    GD +AV +S  GS +  I  
Sbjct: 297 DACVNDLEPP-----AFEVLPSLKRLKKRI-----IAANRGDYDAVFMSGSGSTIVGIGS 346

Query: 618 PAPPTHALVCEDFSNDGLTDVILMTSN 644
           P PP      +D+ +  +++   +T N
Sbjct: 347 PDPPAFVYDDDDYKDTFVSEACFLTRN 373


>sp|B7NLX4|CITX_ECO7I Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
           OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=citX
           PE=3 SV=1
          Length = 183

 Score = 34.3 bits (77), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 553 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 612
           WQ+   A   +   P GM   +     LK  ++ +  N  +   G   +  V++P G IL
Sbjct: 77  WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHNHPL---GRLWDIDVLTPEGDIL 133

Query: 613 TSIDLPAPPTHALVCE 628
           +  D   PP   L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149


>sp|Q87QT9|TOLB_VIBPA Protein TolB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
           2210633) GN=tolB PE=3 SV=1
          Length = 450

 Score = 33.5 bits (75), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 331 KSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVP 390
           K TSYP H       P  +    + +  G    Y    K++K      + +N T+ +W P
Sbjct: 258 KITSYPRHNGAPRFSPDGNKLALVLSKTGTLQVYTFDLKTRKLTQITRSRSNNTEPFWHP 317

Query: 391 N---VVVAHQKEG---IEAVHLASGRTVCKLHLQ-EGGLHADINGDG---VLDHVQAVGG 440
           +   ++    + G   I  V+L SG ++ +L  Q    L   I  DG   V+ +    G 
Sbjct: 318 DGKSLIFTSDRGGKPQIYQVNLGSG-SIDRLTWQGSQNLGGQITPDGRFLVMVNRSDSGF 376

Query: 441 NGAEQTVVSGSMEVL 455
           N A+Q + +G+++VL
Sbjct: 377 NLAKQDLETGALQVL 391


>sp|P34882|MTAA_SYNP2 Modification methylase AquI subunit alpha OS=Synechococcus sp.
           (strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMA PE=3
           SV=1
          Length = 248

 Score = 33.5 bits (75), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 248 GLLRWSRKNENIEAQPTDASQLIP----QHNYKLDVHALNSRHPGEVEFRESVLGV 299
           G++ WS K + +EA  T+ASQ I     ++ Y +  H LN+   G  +FRE V  V
Sbjct: 124 GMINWS-KGKALEAIMTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRERVFIV 178


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,319,027
Number of Sequences: 539616
Number of extensions: 11942380
Number of successful extensions: 29225
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 29224
Number of HSP's gapped (non-prelim): 29
length of query: 694
length of database: 191,569,459
effective HSP length: 125
effective length of query: 569
effective length of database: 124,117,459
effective search space: 70622834171
effective search space used: 70622834171
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)