Query 005484
Match_columns 694
No_of_seqs 52 out of 54
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11138 outer membrane biogen 97.3 0.14 3.1E-06 55.7 26.9 46 599-650 344-392 (394)
2 TIGR03300 assembly_YfgL outer 96.9 0.25 5.3E-06 53.1 23.1 94 526-650 280-377 (377)
3 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.0045 9.8E-08 57.8 6.6 35 52-91 6-40 (111)
4 PRK11138 outer membrane biogen 95.4 0.16 3.4E-06 55.3 12.3 29 389-417 256-284 (394)
5 PF01839 FG-GAP: FG-GAP repeat 94.8 0.033 7.2E-07 41.6 3.2 26 51-76 5-34 (34)
6 PF01839 FG-GAP: FG-GAP repeat 94.7 0.031 6.7E-07 41.7 3.0 25 625-649 5-34 (34)
7 PF14781 BBS2_N: Ciliary BBSom 94.4 0.33 7.2E-06 47.0 9.9 108 62-196 11-120 (136)
8 PF13517 VCBS: Repeat domain i 90.6 0.23 4.9E-06 40.1 2.8 22 55-77 1-22 (61)
9 PF01011 PQQ: PQQ enzyme repea 90.4 0.19 4.2E-06 37.6 2.1 22 238-259 10-31 (38)
10 TIGR03300 assembly_YfgL outer 90.3 1.7 3.7E-05 46.7 10.0 92 528-650 68-161 (377)
11 PF14782 BBS2_C: Ciliary BBSom 90.2 0.32 6.9E-06 55.1 4.4 42 608-650 1-43 (431)
12 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.1 16 0.00034 42.5 18.1 58 601-659 272-338 (527)
13 PF13517 VCBS: Repeat domain i 89.4 0.31 6.8E-06 39.3 2.7 25 629-653 1-25 (61)
14 PF14779 BBS1: Ciliary BBSome 89.4 0.68 1.5E-05 49.2 5.9 76 53-154 22-102 (257)
15 TIGR02658 TTQ_MADH_Hv methylam 89.3 34 0.00075 38.1 19.1 201 398-642 76-318 (352)
16 PF13360 PQQ_2: PQQ-like domai 87.3 6 0.00013 38.9 10.8 88 533-649 1-91 (238)
17 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.3 9 0.00019 44.4 11.7 37 43-79 295-333 (527)
18 cd00216 PQQ_DH Dehydrogenases 84.1 7.3 0.00016 44.4 10.8 88 526-629 62-156 (488)
19 cd00216 PQQ_DH Dehydrogenases 82.6 1.7 3.8E-05 49.3 5.1 91 533-645 364-458 (488)
20 COG1520 FOG: WD40-like repeat 80.2 2.9 6.2E-05 45.4 5.5 70 133-258 71-141 (370)
21 PF13360 PQQ_2: PQQ-like domai 79.3 46 0.001 32.7 13.2 102 526-649 77-188 (238)
22 smart00564 PQQ beta-propeller 77.4 1.6 3.6E-05 30.8 1.8 17 238-254 16-32 (33)
23 TIGR03074 PQQ_membr_DH membran 75.7 4.8 0.0001 48.9 6.1 98 534-642 640-744 (764)
24 PF14779 BBS1: Ciliary BBSome 73.4 8.2 0.00018 41.3 6.4 57 589-647 194-253 (257)
25 PF14783 BBS2_Mid: Ciliary BBS 69.4 5.2 0.00011 37.7 3.5 24 52-75 87-110 (111)
26 PF14727 PHTB1_N: PTHB1 N-term 67.8 34 0.00073 39.0 10.1 61 589-649 251-315 (418)
27 PF14727 PHTB1_N: PTHB1 N-term 66.9 15 0.00033 41.8 7.1 57 52-121 26-84 (418)
28 PF12256 TcdB_toxin_midN: Inse 60.3 6.8 0.00015 38.8 2.6 30 614-644 11-45 (175)
29 smart00191 Int_alpha Integrin 57.2 6 0.00013 32.2 1.4 27 627-653 12-46 (58)
30 PF08450 SGL: SMP-30/Gluconola 51.2 36 0.00078 34.4 6.2 43 598-643 203-245 (246)
31 PF00404 Dockerin_1: Dockerin 51.0 5.8 0.00013 27.1 0.3 11 425-435 1-11 (21)
32 smart00191 Int_alpha Integrin 49.1 11 0.00023 30.8 1.6 18 53-70 12-29 (58)
33 PF12256 TcdB_toxin_midN: Inse 45.0 18 0.00038 35.9 2.7 21 51-71 27-47 (175)
34 PF09912 DUF2141: Uncharacteri 41.4 28 0.00061 32.4 3.3 32 404-435 36-72 (112)
35 COG3386 Gluconolactonase [Carb 41.1 2E+02 0.0043 31.5 10.2 45 596-644 229-276 (307)
36 PF06433 Me-amine-dh_H: Methyl 32.9 3.3E+02 0.0072 30.6 10.3 92 454-559 135-229 (342)
37 PF07483 W_rich_C: Tryptophan- 31.5 12 0.00027 35.2 -0.7 13 420-432 96-108 (109)
38 PF04841 Vps16_N: Vps16, N-ter 31.5 89 0.0019 35.2 5.9 44 601-649 62-106 (410)
39 KOG0301 Phospholipase A2-activ 30.8 4.1E+02 0.0088 32.6 11.1 114 526-661 183-299 (745)
40 KOG2063 Vacuolar assembly/sort 28.2 1.1E+02 0.0025 38.1 6.4 107 505-654 200-309 (877)
41 COG4704 Uncharacterized protei 27.5 36 0.00077 33.5 1.6 28 407-434 72-105 (151)
42 PF13860 FlgD_ig: FlgD Ig-like 27.5 55 0.0012 28.4 2.7 50 601-653 28-77 (81)
43 KOG3637 Vitronectin receptor, 26.2 1.3E+02 0.0028 38.3 6.5 94 560-653 307-424 (1030)
44 PF13540 RCC1_2: Regulator of 25.8 71 0.0015 22.9 2.6 19 595-613 4-22 (30)
45 KOG3637 Vitronectin receptor, 24.5 44 0.00095 42.3 2.1 30 625-654 327-366 (1030)
46 PF10144 SMP_2: Bacterial viru 23.0 2.9E+02 0.0064 28.8 7.4 21 590-615 83-103 (210)
No 1
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.35 E-value=0.14 Score=55.68 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=32.6
Q ss_pred cceEEEEcC-CCCEEEEEeCCC-CCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005484 599 DQEAVVISP-GGSILTSIDLPA-PPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 650 (694)
Q Consensus 599 e~~~~ils~-~G~vl~s~~Lp~-pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 650 (694)
+-.+.++|+ +|+++.+.+++. .-.+.|++. || .|+|.|.+| +|.|.
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~----~~--~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA----DD--KLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE----CC--EEEEEeCCceEEEEe
Confidence 445677886 999999999863 344455553 22 599999998 78764
No 2
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.91 E-value=0.25 Score=53.12 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=60.0
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeecccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEe-ecceEEE
Q 005484 526 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG-GDQEAVV 604 (694)
Q Consensus 526 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~-Ge~~~~i 604 (694)
+.+++.+++|.|.|++.. ++..+|+... +. + . ...-|.+. ...|++. -+-.+.+
T Consensus 280 ~~vyv~~~~G~l~~~d~~----tG~~~W~~~~---~~------~--~-~~ssp~i~---------g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRR----SGSELWKNDE---LK------Y--R-QLTAPAVV---------GGYLVVGDFEGYLHW 334 (377)
T ss_pred CEEEEECCCCeEEEEECC----CCcEEEcccc---cc------C--C-ccccCEEE---------CCEEEEEeCCCEEEE
Confidence 346667789999999974 3378888521 00 0 0 01112211 1233333 3445777
Q ss_pred EcC-CCCEEEEEeCCCC-CCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005484 605 ISP-GGSILTSIDLPAP-PTHALVCEDFSNDGLTDVILMTSNG-VYGFV 650 (694)
Q Consensus 605 ls~-~G~vl~s~~Lp~p-P~ap~iv~DfngDG~nDiIVvT~~G-iygfv 650 (694)
+|+ +|+++.+.+++.. -.+.|++.| +-|+|.|.+| +|+|.
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~------~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVG------DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEEC------CEEEEEeCCceEEEeC
Confidence 886 8999999999884 466667666 3499999999 88873
No 3
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.66 E-value=0.0045 Score=57.78 Aligned_cols=35 Identities=37% Similarity=0.587 Sum_probs=29.0
Q ss_pred eEEccCCCCceeEEEecCCceEEEecccccCccCCccccc
Q 005484 52 IVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEAR 91 (694)
Q Consensus 52 IvtDLnGDG~~evivat~d~ki~v~~p~~~~~~~gf~~~~ 91 (694)
.++|.||||++||||+|.|.+|+|++ .++-..+.+
T Consensus 6 ~~~d~d~dg~~eLlvGs~D~~IRvf~-----~~e~~~Ei~ 40 (111)
T PF14783_consen 6 CLFDFDGDGENELLVGSDDFEIRVFK-----GDEIVAEIT 40 (111)
T ss_pred EEEecCCCCcceEEEecCCcEEEEEe-----CCcEEEEEe
Confidence 47899999999999999999999999 555443333
No 4
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.43 E-value=0.16 Score=55.34 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=22.5
Q ss_pred cCcEEEEecccceeEEEccCCCeeEEEec
Q 005484 389 VPNVVVAHQKEGIEAVHLASGRTVCKLHL 417 (694)
Q Consensus 389 ~PNViV~H~~~GIEViHL~SGrtlckl~L 417 (694)
.-.|++......+-++.+.||+.+-+..+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 44566777777899999999998877654
No 5
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=94.75 E-value=0.033 Score=41.58 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=18.8
Q ss_pred CeEEccCCCCceeEEEe----cCCceEEEe
Q 005484 51 PIVADLNGDGRKEVLVA----THDAKIQVL 76 (694)
Q Consensus 51 PIvtDLnGDG~~eviva----t~d~ki~v~ 76 (694)
.-+.|+||||+.||++. +..+++.||
T Consensus 5 ~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 5 VAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp EEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 34789999999999995 444666554
No 6
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=94.74 E-value=0.031 Score=41.75 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=17.9
Q ss_pred cEEeecCCCCcccEEE----ecCCe-EEEE
Q 005484 625 LVCEDFSNDGLTDVIL----MTSNG-VYGF 649 (694)
Q Consensus 625 ~iv~DfngDG~nDiIV----vT~~G-iygf 649 (694)
+-+.||||||..||+| .+..| +|.|
T Consensus 5 ~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 5 VAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp EEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 5578999999999999 45554 5544
No 7
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.40 E-value=0.33 Score=47.03 Aligned_cols=108 Identities=24% Similarity=0.356 Sum_probs=70.8
Q ss_pred eeEEEecCCceEEEecccccCccCCccccccceeeecccccccccCCCceEEEecceeccccccCCCceEEEEEEecCeE
Q 005484 62 KEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWS 141 (694)
Q Consensus 62 ~evivat~d~ki~v~~p~~~~~~~gf~~~~~~~e~Sll~~~~~~~~grrpVAlaaG~~~~~~~~~~~~kqVIvVVtsdw~ 141 (694)
+-|..||..+||-|.+||.+....+- .-.++++|- -++.+.||+||.+++ ..++=+.+|-+.=+
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~----~~~~i~~LN------in~~italaaG~l~~------~~~~D~LliGt~t~ 74 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGR----QDSDISFLN------INQEITALAAGRLKP------DDGRDCLLIGTQTS 74 (136)
T ss_pred eeEEEEecCCEEEEECCCcccccccc----ccCceeEEE------CCCceEEEEEEecCC------CCCcCEEEEeccce
Confidence 47899999999999999987332221 123344432 267999999999998 23344556677889
Q ss_pred EEEec--CCchhHhhhcccccCCCCCcceeEEEEEeeceeccCCceEEEEeeeeccc
Q 005484 142 VMCFD--HNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQ 196 (694)
Q Consensus 142 V~Cfd--hnLk~lWe~~l~~~~p~~~~~~EvsIsIs~~~ik~~D~G~VIVGgr~e~~ 196 (694)
|+||| .|-.. .+.++|.+..- |.+- ++...+.=++||||.-..+
T Consensus 75 llaYDV~~N~d~-----Fyke~~DGvn~----i~~g--~~~~~~~~l~ivGGncsi~ 120 (136)
T PF14781_consen 75 LLAYDVENNSDL-----FYKEVPDGVNA----IVIG--KLGDIPSPLVIVGGNCSIQ 120 (136)
T ss_pred EEEEEcccCchh-----hhhhCccceeE----EEEE--ecCCCCCcEEEECceEEEE
Confidence 99994 34333 33456665322 2222 5555678899999987554
No 8
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=90.56 E-value=0.23 Score=40.14 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=17.3
Q ss_pred ccCCCCceeEEEecCCceEEEec
Q 005484 55 DLNGDGRKEVLVATHDAKIQVLE 77 (694)
Q Consensus 55 DLnGDG~~evivat~d~ki~v~~ 77 (694)
|+||||++||+++. ++++.++.
T Consensus 1 D~ngDG~~Div~~~-~~~~~~~~ 22 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-DGSVYVYL 22 (61)
T ss_dssp -SSSSSS-EEEEE--SSSEEEEE
T ss_pred CCCCCCCccEEEEe-CCCeEEEE
Confidence 89999999999998 67888887
No 9
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=90.44 E-value=0.19 Score=37.64 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.3
Q ss_pred eEEEeecCCCCceeccccCCCc
Q 005484 238 FAFYAFAGRSGLLRWSRKNENI 259 (694)
Q Consensus 238 fsyyAf~g~tG~~RW~h~~~df 259 (694)
-..||||.+||++.|+++.+..
T Consensus 10 g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp SEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEEECCCCCEEEeeeCCCC
Confidence 3689999999999999998853
No 10
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=90.28 E-value=1.7 Score=46.69 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=60.8
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeecccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEcC
Q 005484 528 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 607 (694)
Q Consensus 528 ~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~ 607 (694)
+++...+|.|.|++.. +|...|+.+++...... |.+ +...++++..+..+.-+|.
T Consensus 68 v~v~~~~g~v~a~d~~----tG~~~W~~~~~~~~~~~-------------p~v--------~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 68 VYAADADGTVVALDAE----TGKRLWRVDLDERLSGG-------------VGA--------DGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred EEEECCCCeEEEEEcc----CCcEeeeecCCCCcccc-------------eEE--------cCCEEEEEcCCCEEEEEEC
Confidence 4455566999999953 34899998777533211 111 1223444455667788886
Q ss_pred -CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005484 608 -GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 650 (694)
Q Consensus 608 -~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 650 (694)
+|+++-+..++.++.++|++.| + -+++.+.+| +|+|-
T Consensus 123 ~tG~~~W~~~~~~~~~~~p~v~~----~--~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 123 EDGKELWRAKLSSEVLSPPLVAN----G--LVVVRTNDGRLTALD 161 (377)
T ss_pred CCCcEeeeeccCceeecCCEEEC----C--EEEEECCCCeEEEEE
Confidence 9999999999988888888742 2 266667676 77774
No 11
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=90.16 E-value=0.32 Score=55.08 Aligned_cols=42 Identities=26% Similarity=0.543 Sum_probs=38.9
Q ss_pred CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005484 608 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 650 (694)
Q Consensus 608 ~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 650 (694)
+|.++-...|.+ |+|.++.+|+-+||.+++|++|.|| |-||.
T Consensus 1 tGeVlfKd~~~s-~VA~vv~~DYR~dG~~~lI~csvdGeVrGy~ 43 (431)
T PF14782_consen 1 TGEVLFKDTFSS-PVAGVVVADYRMDGKPQLICCSVDGEVRGYL 43 (431)
T ss_pred CceEEEEecccc-hhheeeeeccccCCCceEEEEEcCCEEEEec
Confidence 588898888988 8999999999999999999999999 99993
No 12
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.11 E-value=16 Score=42.46 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=43.2
Q ss_pred eEEEEcC-CCCEEEEEeCCC------CCCcccEEeecCCCCc-ccEE-EecCCeEEEEEEeecCCchh
Q 005484 601 EAVVISP-GGSILTSIDLPA------PPTHALVCEDFSNDGL-TDVI-LMTSNGVYGFVQTRQPGALF 659 (694)
Q Consensus 601 ~~~ils~-~G~vl~s~~Lp~------pP~ap~iv~DfngDG~-nDiI-VvT~~Giygfv~~~~~g~~~ 659 (694)
+++-||. +|++.=.++.-. =..++|++.|++.||. -+++ +.|++| +-|++-|.+|-.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-FFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-eEEEEECCCCcee
Confidence 6777786 899988877733 3567888889877775 3555 777788 5699999999654
No 13
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=89.43 E-value=0.31 Score=39.32 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=18.6
Q ss_pred ecCCCCcccEEEecCCeEEEEEEee
Q 005484 629 DFSNDGLTDVILMTSNGVYGFVQTR 653 (694)
Q Consensus 629 DfngDG~nDiIVvT~~Giygfv~~~ 653 (694)
||||||..||++.+...++-|.+..
T Consensus 1 D~ngDG~~Div~~~~~~~~~~~~~~ 25 (61)
T PF13517_consen 1 DFNGDGRPDIVVANDGSVYVYLNDG 25 (61)
T ss_dssp -SSSSSS-EEEEE-SSSEEEEEB-S
T ss_pred CCCCCCCccEEEEeCCCeEEEEECC
Confidence 8999999999999977788887764
No 14
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=89.42 E-value=0.68 Score=49.23 Aligned_cols=76 Identities=30% Similarity=0.574 Sum_probs=56.3
Q ss_pred EEccCCCCceeEEEec-----CCceEEEecccccCccCCccccccceeeecccccccccCCCceEEEecceeccccccCC
Q 005484 53 VADLNGDGRKEVLVAT-----HDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQ 127 (694)
Q Consensus 53 vtDLnGDG~~evivat-----~d~ki~v~~p~~~~~~~gf~~~~~~~e~Sll~~~~~~~~grrpVAlaaG~~~~~~~~~~ 127 (694)
+.||+|||-+=||+|. .+.||.||. . ..+..|..| || -|+||++=|.+. .+
T Consensus 22 l~Dl~gDGd~kLvvaD~g~~~~~~kLKVyk------G-----t~l~~E~~L-~d--------~P~ai~sFy~d~----~e 77 (257)
T PF14779_consen 22 LADLQGDGDYKLVVADLGTGDQNMKLKVYK------G-----TSLISEITL-PD--------LPSAIVSFYMDE----HE 77 (257)
T ss_pred eeecCCCCeEEEEEEecCCcCCCceEEEEc------C-----CChhhcccc-cC--------CCeEEEEEeccC----CC
Confidence 5799999999999999 457999998 1 334567777 66 799999999887 35
Q ss_pred CceEEEEEEecCeEEEEecCCchhHhh
Q 005484 128 PLKQVLVVVTSGWSVMCFDHNLNKLWE 154 (694)
Q Consensus 128 ~~kqVIvVVtsdw~V~CfdhnLk~lWe 154 (694)
++..+|+ |-++=.|+-| .|||+..+
T Consensus 78 p~~P~iA-VA~G~~vyiY-kNlkP~yK 102 (257)
T PF14779_consen 78 PRTPAIA-VAAGPSVYIY-KNLKPFYK 102 (257)
T ss_pred CCCCeEE-EEeCCEEEEE-ecccceee
Confidence 6666555 5566777777 34555443
No 15
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.31 E-value=34 Score=38.07 Aligned_cols=201 Identities=14% Similarity=0.202 Sum_probs=118.3
Q ss_pred ccceeEEEccCCCeeEEEecCCC-------------------Cee-eeccCCCceeEEEeeccCCceeeeecCCcccCcC
Q 005484 398 KEGIEAVHLASGRTVCKLHLQEG-------------------GLH-ADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRP 457 (694)
Q Consensus 398 ~~GIEViHL~SGrtlckl~L~~~-------------------~l~-aDINgDGvlD~V~~~gg~~~e~~~~~g~~~~~~~ 457 (694)
..-|+|+.++|++++-++.+++. -+| ++++.|..|--|-+..+.-..+. ..++
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei-------~vp~ 148 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM-------DVPD 148 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE-------eCCC
Confidence 46799999999999998887332 244 46666666655554433333222 2377
Q ss_pred eEEEEeecCCccccceeccccCCCCCCcccCCccccCcCCCCCCCccccccceEE--------eCCCCCCCCccccccEE
Q 005484 458 CWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILI--------PRSDGHRHRKGSHGDVV 529 (694)
Q Consensus 458 C~a~atSGvP~re~LFn~siC~~~~f~~f~~~~~~~~~~~~~d~~~levv~Pl~i--------~~~~g~~~r~~~~~D~v 529 (694)
|+.+-.+ .|.=|- .+|....+.....++ + +...+.+..++ .++ .- ....+-.+
T Consensus 149 ~~~vy~t----~e~~~~-~~~~Dg~~~~v~~d~---------~-g~~~~~~~~vf~~~~~~v~~rP--~~--~~~dg~~~ 209 (352)
T TIGR02658 149 CYHIFPT----ANDTFF-MHCRDGSLAKVGYGT---------K-GNPKIKPTEVFHPEDEYLINHP--AY--SNKSGRLV 209 (352)
T ss_pred CcEEEEe----cCCccE-EEeecCceEEEEecC---------C-CceEEeeeeeecCCccccccCC--ce--EcCCCcEE
Confidence 9888665 355555 788765542221110 0 11111111111 111 00 01124678
Q ss_pred EEecCceEEEecCCCCCCcceeeeeeeccc----ccccCCCCCCCCccceeeeeeEEeecccCCccceEEE---------
Q 005484 530 FLTNRGEVTAYSPGLHGHDAIWQWQLLTDA----TWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA--------- 596 (694)
Q Consensus 530 FL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a----~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA--------- 596 (694)
|.++.|.|+-++.++.+-.....|.+.+.+ .|... | .+++.+.+.+..=|+++
T Consensus 210 ~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~----g----------~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 210 WPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG----G----------WQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred EEecCCeEEEEecCCCcceecceeeeccccccccccCCC----c----------ceeEEEcCCCCEEEEEecCCcccccc
Confidence 999999999999766544445667765543 45442 1 12355555666666665
Q ss_pred eecceEEEEcC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEec
Q 005484 597 GGDQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMT 642 (694)
Q Consensus 597 ~Ge~~~~ils~-~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT 642 (694)
.|..++.++|. ++++++.+++...| --.-|+.||..=+.+..
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~~----~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHEI----DSINVSQDAKPLLYALS 318 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCce----eeEEECCCCCeEEEEeC
Confidence 45579999996 99999999997643 33347777765555444
No 16
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.32 E-value=6 Score=38.94 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=57.1
Q ss_pred cCceEEEecC-CCCCCcceeeeeeecccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEcC-CCC
Q 005484 533 NRGEVTAYSP-GLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-GGS 610 (694)
Q Consensus 533 s~G~VTs~~~-~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~G~ 610 (694)
+.|.|+|+++ .| ...|+...+..+.. ....|. ....-++++.++..+..+|. +|+
T Consensus 1 ~~g~l~~~d~~tG-----~~~W~~~~~~~~~~----------~~~~~~--------~~~~~v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 1 DDGTLSALDPRTG-----KELWSYDLGPGIGG----------PVATAV--------PDGGRVYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp -TSEEEEEETTTT-----EEEEEEECSSSCSS----------EEETEE--------EETTEEEEEETTSEEEEEETTTSE
T ss_pred CCCEEEEEECCCC-----CEEEEEECCCCCCC----------ccceEE--------EeCCEEEEEcCCCEEEEEECCCCC
Confidence 4689999998 44 89999865432100 000011 12233455569999999996 999
Q ss_pred EEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 005484 611 ILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 649 (694)
Q Consensus 611 vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygf 649 (694)
++-+.+++.+...+|.+.+ +.|+|.+.+| +|+|
T Consensus 58 ~~W~~~~~~~~~~~~~~~~------~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 58 VLWRFDLPGPISGAPVVDG------GRVYVGTSDGSLYAL 91 (238)
T ss_dssp EEEEEECSSCGGSGEEEET------TEEEEEETTSEEEEE
T ss_pred EEEEeeccccccceeeecc------cccccccceeeeEec
Confidence 9999999988777764432 3456676665 6655
No 17
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.27 E-value=9 Score=44.42 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=30.7
Q ss_pred cccccCCCCeEEccCCCCc--eeEEEecCCceEEEeccc
Q 005484 43 FDADRLPPPIVADLNGDGR--KEVLVATHDAKIQVLEPH 79 (694)
Q Consensus 43 ~~~e~lP~PIvtDLnGDG~--~evivat~d~ki~v~~p~ 79 (694)
++-+..-.|+++|++.||+ +-|+.++.++.+-++++.
T Consensus 295 wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 295 WDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECC
Confidence 3455667899999988887 788899999999999954
No 18
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=84.06 E-value=7.3 Score=44.38 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=55.4
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeecccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005484 526 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 605 (694)
Q Consensus 526 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 605 (694)
+.++|.+.+|.|.|++.. .|+.+|+.++....... .|.+..-+.-..+...++++..+..+.-+
T Consensus 62 g~vy~~~~~g~l~AlD~~----tG~~~W~~~~~~~~~~~------------~~~~~~~g~~~~~~~~V~v~~~~g~v~Al 125 (488)
T cd00216 62 GDMYFTTSHSALFALDAA----TGKVLWRYDPKLPADRG------------CCDVVNRGVAYWDPRKVFFGTFDGRLVAL 125 (488)
T ss_pred CEEEEeCCCCcEEEEECC----CChhhceeCCCCCcccc------------ccccccCCcEEccCCeEEEecCCCeEEEE
Confidence 345566668999999963 34899998876541110 00000000101112456666677778888
Q ss_pred cC-CCCEEEEEeCCCC------CCcccEEee
Q 005484 606 SP-GGSILTSIDLPAP------PTHALVCED 629 (694)
Q Consensus 606 s~-~G~vl~s~~Lp~p------P~ap~iv~D 629 (694)
|. +|+++-.++++.+ ..++|++.|
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~ 156 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVK 156 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEecCCCEEEC
Confidence 96 9999999999876 567777775
No 19
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=82.62 E-value=1.7 Score=49.31 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=54.2
Q ss_pred cCceEEEecCCCCCCcceeeeeeecc---cccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEcC-C
Q 005484 533 NRGEVTAYSPGLHGHDAIWQWQLLTD---ATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-G 608 (694)
Q Consensus 533 s~G~VTs~~~~~~g~~~~~~Wq~~T~---a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~ 608 (694)
.+|.|+|++.. +|+.+|+...+ ..|... . ...-.++. -.+ .-+.+...+..+.-+|. +
T Consensus 364 ~~G~l~AlD~~----tG~~~W~~~~~~~~~~~~~g-------~-~~~~~~~~----~~g--~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 364 GKGGLAALDPK----TGKVVWEKREGTIRDSWNIG-------F-PHWGGSLA----TAG--NLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CceEEEEEeCC----CCcEeeEeeCCccccccccC-------C-cccCcceE----ecC--CeEEEECCCCeEEEEECCC
Confidence 57889999863 44899998766 223210 0 00001111 011 12333345567777885 9
Q ss_pred CCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe
Q 005484 609 GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG 645 (694)
Q Consensus 609 G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G 645 (694)
|+++-+.+|+++-.++|++-.-+| .+.|.|.+|
T Consensus 426 G~~lW~~~~~~~~~a~P~~~~~~g----~~yv~~~~g 458 (488)
T cd00216 426 GKELWKFRTPSGIQATPMTYEVNG----KQYVGVMVG 458 (488)
T ss_pred CceeeEEECCCCceEcCEEEEeCC----EEEEEEEec
Confidence 999999999999999998654443 455555554
No 20
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.19 E-value=2.9 Score=45.38 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=49.0
Q ss_pred EEEEecCeEEEEecCCchh-HhhhcccccCCCCCcceeEEEEEeeceeccCCceEEEEeeeecccCCCCCChhhhhhhhh
Q 005484 133 LVVVTSGWSVMCFDHNLNK-LWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGLAE 211 (694)
Q Consensus 133 IvVVtsdw~V~CfdhnLk~-lWe~~l~~~~p~~~~~~EvsIsIs~~~ik~~D~G~VIVGgr~e~~~~~~~d~f~e~~~~~ 211 (694)
|.|-+++..|.|||.+-.+ +|+..+... ....-.|... ..|.|.+|...
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~---------~~~~~~~~~~---~~G~i~~g~~~------------------ 120 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGA---------VAQLSGPILG---SDGKIYVGSWD------------------ 120 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCc---------ceeccCceEE---eCCeEEEeccc------------------
Confidence 4444788899999988866 899988860 0000111111 16778888333
Q ss_pred hhhhhhhcchhhhhhcccCCCcccceeEEEeecCCCCceeccccCCC
Q 005484 212 KNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNEN 258 (694)
Q Consensus 212 ~~~e~hr~~~~~k~~~~~~g~~~~~HfsyyAf~g~tG~~RW~h~~~d 258 (694)
| .|||||..||++.|+++-.+
T Consensus 121 -------------------g-------~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 121 -------------------G-------KLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred -------------------c-------eEEEEECCCCcEEEEEecCC
Confidence 2 89999999999999999876
No 21
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=79.26 E-value=46 Score=32.70 Aligned_cols=102 Identities=21% Similarity=0.383 Sum_probs=57.5
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeee-ecccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEE
Q 005484 526 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQL-LTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 604 (694)
Q Consensus 526 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~-~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 604 (694)
..+++.+.+|.|.+++.. +|...|+. .+....... . ....|.+. .+.++++.....+..
T Consensus 77 ~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~-------~-~~~~~~~~--------~~~~~~~~~~g~l~~ 136 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGV-------R-SSSSPAVD--------GDRLYVGTSSGKLVA 136 (238)
T ss_dssp TEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCST-------B---SEEEEE--------TTEEEEEETCSEEEE
T ss_pred cccccccceeeeEecccC----Ccceeeeecccccccccc-------c-cccCceEe--------cCEEEEEeccCcEEE
Confidence 566777788999999932 34899994 444211110 0 01112211 334455554788999
Q ss_pred EcC-CCCEEEEEeCCCCCCcccE--EeecC-----CCCcccEEEecCCe-EEEE
Q 005484 605 ISP-GGSILTSIDLPAPPTHALV--CEDFS-----NDGLTDVILMTSNG-VYGF 649 (694)
Q Consensus 605 ls~-~G~vl~s~~Lp~pP~ap~i--v~Dfn-----gDG~nDiIVvT~~G-iygf 649 (694)
+|+ +|+++-..+++.++..-.+ +.|.+ .+| .|.+.+.+| ++.+
T Consensus 137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV 188 (238)
T ss_dssp EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE
T ss_pred EecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE
Confidence 995 9999999999776632221 11111 133 666667677 4444
No 22
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.37 E-value=1.6 Score=30.79 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=15.2
Q ss_pred eEEEeecCCCCceeccc
Q 005484 238 FAFYAFAGRSGLLRWSR 254 (694)
Q Consensus 238 fsyyAf~g~tG~~RW~h 254 (694)
-..||+|.+||+++|+.
T Consensus 16 g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEEcccCcEEEEc
Confidence 46899999999999985
No 23
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.70 E-value=4.8 Score=48.85 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=57.2
Q ss_pred CceEEEecCCCCCCcceeeeeeecccccccCCCCCCCCccceeeeeeEEeecccC--Cc-cceEE--EeecceEEEEcC-
Q 005484 534 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVH--DN-QQMIL--AGGDQEAVVISP- 607 (694)
Q Consensus 534 ~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~--~~-~~~Il--A~Ge~~~~ils~- 607 (694)
-|.|+|+|..- ++..||...+-.=... |.|. ....|-=...+.... .+ ...++ ++.+.++.-+|.
T Consensus 640 ~G~l~AiDl~t----Gk~~W~~~~g~~~~~~--p~~~---~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~ 710 (764)
T TIGR03074 640 WGYMAAIDLKT----GKVVWQHPNGTVRDTG--PMGI---RMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLS 710 (764)
T ss_pred cEEEEEEECCC----CcEeeeeECCcccccc--cccc---ccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECC
Confidence 48999999753 4899998775321111 1110 000000000111111 01 23333 345778888885
Q ss_pred CCCEEEEEeCCCCCCcccEEee-cCCCCcccEEEec
Q 005484 608 GGSILTSIDLPAPPTHALVCED-FSNDGLTDVILMT 642 (694)
Q Consensus 608 ~G~vl~s~~Lp~pP~ap~iv~D-fngDG~nDiIVvT 642 (694)
+|++|=+.+||+...+.|+.=- . ||.-=|+|++
T Consensus 711 tGk~lW~~~l~~~~~a~P~tY~~~--~GkQYVvi~a 744 (764)
T TIGR03074 711 TGKELWKARLPAGGQATPMTYMGK--DGKQYVVIVA 744 (764)
T ss_pred CCceeeEeeCCCCcccCCEEEEec--CCEEEEEEEe
Confidence 9999999999999999888764 4 6776666664
No 24
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=73.38 E-value=8.2 Score=41.26 Aligned_cols=57 Identities=19% Similarity=0.459 Sum_probs=46.8
Q ss_pred CccceEEEeecceEEEEcCCC-CEEEEEeCCCCCCcccEEeecC-CCCcccEEEecCCe-EE
Q 005484 589 DNQQMILAGGDQEAVVISPGG-SILTSIDLPAPPTHALVCEDFS-NDGLTDVILMTSNG-VY 647 (694)
Q Consensus 589 ~~~~~IlA~Ge~~~~ils~~G-~vl~s~~Lp~pP~ap~iv~Dfn-gDG~nDiIVvT~~G-iy 647 (694)
..+-.||++-..++-|||+.| .++.++.||++|+.=...+-|+ .|.. |+|.|-+| ||
T Consensus 194 a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyR--I~Va~Rdg~iy 253 (257)
T PF14779_consen 194 AVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYR--IVVACRDGKIY 253 (257)
T ss_pred CcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceE--EEEEeCCCEEE
Confidence 456789999999999999977 8899999999999766666665 5553 89999998 44
No 25
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=69.44 E-value=5.2 Score=37.73 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=21.9
Q ss_pred eEEccCCCCceeEEEecCCceEEE
Q 005484 52 IVADLNGDGRKEVLVATHDAKIQV 75 (694)
Q Consensus 52 IvtDLnGDG~~evivat~d~ki~v 75 (694)
...|+||||.+|||+.=++|||.+
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEEe
Confidence 467999999999999999999875
No 26
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=67.80 E-value=34 Score=39.02 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=47.8
Q ss_pred CccceEEEeecceEEEEcCCCCEEEEEeCCCCCCcccEEee--cCCCC-cccEEEecCCe-EEEE
Q 005484 589 DNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCED--FSNDG-LTDVILMTSNG-VYGF 649 (694)
Q Consensus 589 ~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~iv~D--fngDG-~nDiIVvT~~G-iygf 649 (694)
+..+.|++-|++.+.+++.+|.+..+.+|..+|++=-.+.= -+..+ -+=+||.|.++ +..|
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy 315 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY 315 (418)
T ss_pred CCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE
Confidence 37799999999999999999999999999998887665443 33322 12388889887 7777
No 27
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=66.86 E-value=15 Score=41.78 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=45.2
Q ss_pred eEEccC--CCCceeEEEecCCceEEEecccccCccCCccccccceeeecccccccccCCCceEEEecceecc
Q 005484 52 IVADLN--GDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDR 121 (694)
Q Consensus 52 IvtDLn--GDG~~evivat~d~ki~v~~p~~~~~~~gf~~~~~~~e~Sll~~~~~~~~grrpVAlaaG~~~~ 121 (694)
.|.++| .+|+.-|||.+..|.|+||.| ..++|....++-|..| . -.++.|++|+.-.
T Consensus 26 ~v~~~~~~~~~~d~IivGS~~G~LrIy~P----~~~~~~~~~lllE~~l-~--------~PILqv~~G~F~s 84 (418)
T PF14727_consen 26 CVGNLDNSPSGSDKIIVGSYSGILRIYDP----SGNEFQPEDLLLETQL-K--------DPILQVECGKFVS 84 (418)
T ss_pred EEEcccCCCCCccEEEEeccccEEEEEcc----CCCCCCCccEEEEEec-C--------CcEEEEEeccccC
Confidence 466676 578889999999999999997 5566766678888888 2 2789999998743
No 28
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=60.29 E-value=6.8 Score=38.76 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=21.8
Q ss_pred EEeCCCCCCc-----ccEEeecCCCCcccEEEecCC
Q 005484 614 SIDLPAPPTH-----ALVCEDFSNDGLTDVILMTSN 644 (694)
Q Consensus 614 s~~Lp~pP~a-----p~iv~DfngDG~nDiIVvT~~ 644 (694)
.+.+|.||.- ..-+.||||||+.|++. +..
T Consensus 11 ~~~~~~p~~~~~~~~~~~~~DinGdG~~dlv~-~~~ 45 (175)
T PF12256_consen 11 PVTIPLPPGDSYDLSQVSVADINGDGTADLVW-SSP 45 (175)
T ss_pred cccccCCCcccccccEEEEEEeCCCCCEEEEE-ecC
Confidence 4445555444 46899999999999999 443
No 29
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=57.18 E-value=6 Score=32.22 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=19.1
Q ss_pred EeecCCCCcccEEEec--------CCeEEEEEEee
Q 005484 627 CEDFSNDGLTDVILMT--------SNGVYGFVQTR 653 (694)
Q Consensus 627 v~DfngDG~nDiIVvT--------~~Giygfv~~~ 653 (694)
+.|+|+||..||+|-. ...+|.|....
T Consensus 12 ~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~~~ 46 (58)
T smart00191 12 VGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSS 46 (58)
T ss_pred ccccCCCCccCEEEeCcccCCCCCCCEEEEEEecC
Confidence 6899999999988752 23366665543
No 30
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=51.22 E-value=36 Score=34.42 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=35.7
Q ss_pred ecceEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC
Q 005484 598 GDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS 643 (694)
Q Consensus 598 Ge~~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~ 643 (694)
+...+.++|++|+++..+++|.+ .|.-.-|-|+..+.|.|.|.
T Consensus 203 ~~~~I~~~~p~G~~~~~i~~p~~---~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 203 GGGRIVVFDPDGKLLREIELPVP---RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTTEEEEEETTSCEEEEEE-SSS---SEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEECCCccEEEEEcCCCC---CEEEEEEECCCCCEEEEEeC
Confidence 77889999999999999999943 56677788888888988885
No 31
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=50.98 E-value=5.8 Score=27.08 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=8.6
Q ss_pred eccCCCceeEE
Q 005484 425 DINGDGVLDHV 435 (694)
Q Consensus 425 DINgDGvlD~V 435 (694)
|+||||.||.+
T Consensus 1 DvN~DG~vna~ 11 (21)
T PF00404_consen 1 DVNGDGKVNAI 11 (21)
T ss_dssp -TTSSSSSSHH
T ss_pred CCCCCCcCCHH
Confidence 89999999864
No 32
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=49.06 E-value=11 Score=30.76 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=15.3
Q ss_pred EEccCCCCceeEEEecCC
Q 005484 53 VADLNGDGRKEVLVATHD 70 (694)
Q Consensus 53 vtDLnGDG~~evivat~d 70 (694)
+.|+||||..||+|...-
T Consensus 12 ~~d~ngDg~~dl~vGAP~ 29 (58)
T smart00191 12 VGDVNGDGYPDLLVGAPR 29 (58)
T ss_pred ccccCCCCccCEEEeCcc
Confidence 579999999999997654
No 33
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=45.02 E-value=18 Score=35.87 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=17.3
Q ss_pred CeEEccCCCCceeEEEecCCc
Q 005484 51 PIVADLNGDGRKEVLVATHDA 71 (694)
Q Consensus 51 PIvtDLnGDG~~evivat~d~ 71 (694)
--++|+||||..|+|......
T Consensus 27 ~~~~DinGdG~~dlv~~~~~~ 47 (175)
T PF12256_consen 27 VSVADINGDGTADLVWSSPSS 47 (175)
T ss_pred EEEEEeCCCCCEEEEEecCCc
Confidence 468999999999999955543
No 34
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=41.44 E-value=28 Score=32.42 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.3
Q ss_pred EEccCCCeeEEEe-cCCC----CeeeeccCCCceeEE
Q 005484 404 VHLASGRTVCKLH-LQEG----GLHADINGDGVLDHV 435 (694)
Q Consensus 404 iHL~SGrtlckl~-L~~~----~l~aDINgDGvlD~V 435 (694)
+....|..-|.+. |++| ..|+|.|+||.||.-
T Consensus 36 ~~~~~~~~~~~f~~lp~G~YAi~v~hD~N~NgklD~n 72 (112)
T PF09912_consen 36 VPAKGGTVTITFEDLPPGTYAIAVFHDENGNGKLDTN 72 (112)
T ss_pred EEcCCCcEEEEECCCCCccEEEEEEEeCCCCCcCCcC
Confidence 4456688889986 7776 456899999999975
No 35
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=41.14 E-value=2e+02 Score=31.48 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=33.3
Q ss_pred Eeecc--eEEEEcCCCCEEEEEeCC-CCCCcccEEeecCCCCcccEEEecCC
Q 005484 596 AGGDQ--EAVVISPGGSILTSIDLP-APPTHALVCEDFSNDGLTDVILMTSN 644 (694)
Q Consensus 596 A~Ge~--~~~ils~~G~vl~s~~Lp-~pP~ap~iv~DfngDG~nDiIVvT~~ 644 (694)
+..+. .+++.+++|+++..++|| ..|+.+-. -|...++|.|.+..
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~F----gG~~~~~L~iTs~~ 276 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAF----GGPDLNTLYITSAR 276 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECCCCCCccceE----eCCCcCEEEEEecC
Confidence 55554 789999999999999999 55555543 34557777777665
No 36
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=32.90 E-value=3.3e+02 Score=30.62 Aligned_cols=92 Identities=22% Similarity=0.371 Sum_probs=50.8
Q ss_pred cCcCeEEEEeecCCccccceeccccCCCCCCcccCCccccCcCCCCCCCccccccceEEeCCC---CCCCCccccccEEE
Q 005484 454 VLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSD---GHRHRKGSHGDVVF 530 (694)
Q Consensus 454 ~~~~C~a~atSGvP~re~LFn~siC~~~~f~~f~~~~~~~~~~~~~d~~~levv~Pl~i~~~~---g~~~r~~~~~D~vF 530 (694)
..+.||.+--+| +.=|. ++|..+.+.-+...+ .|.+ . +..++++.+-.+ .+.-..+..+-.+|
T Consensus 135 ~~PGC~~iyP~~----~~~F~-~lC~DGsl~~v~Ld~------~Gk~--~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 135 DTPGCWLIYPSG----NRGFS-MLCGDGSLLTVTLDA------DGKE--A-QKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp EGTSEEEEEEEE----TTEEE-EEETTSCEEEEEETS------TSSE--E-EEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred cCCCEEEEEecC----CCceE-EEecCCceEEEEECC------CCCE--e-EeeccccCCCCcccccccceECCCCeEEE
Confidence 348999998775 34577 999988753332210 1111 1 222232222111 01101123356899
Q ss_pred EecCceEEEecCCCCCCcceeeeeeeccc
Q 005484 531 LTNRGEVTAYSPGLHGHDAIWQWQLLTDA 559 (694)
Q Consensus 531 L~s~G~VTs~~~~~~g~~~~~~Wq~~T~a 559 (694)
.+=+|.|-.++-++-+-.....|.+-|++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred EecCCEEEEEeccCCcccccCcccccCcc
Confidence 99999999998877444555677776653
No 37
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=31.51 E-value=12 Score=35.17 Aligned_cols=13 Identities=46% Similarity=1.002 Sum_probs=11.0
Q ss_pred CCeeeeccCCCce
Q 005484 420 GGLHADINGDGVL 432 (694)
Q Consensus 420 ~~l~aDINgDGvl 432 (694)
..++.||||||+|
T Consensus 96 ~~F~qDlNgDG~I 108 (109)
T PF07483_consen 96 TSFHQDLNGDGTI 108 (109)
T ss_pred HHhCccccCCCcC
Confidence 4678899999987
No 38
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.47 E-value=89 Score=35.15 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=38.4
Q ss_pred eEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeE-EEE
Q 005484 601 EAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGV-YGF 649 (694)
Q Consensus 601 ~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Gi-ygf 649 (694)
.+.|.+.+|++|.++.++. .++|...|+.+ .++||++++|. .-|
T Consensus 62 ~I~iys~sG~ll~~i~w~~---~~iv~~~wt~~--e~LvvV~~dG~v~vy 106 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS---GRIVGMGWTDD--EELVVVQSDGTVRVY 106 (410)
T ss_pred EEEEECCCCCEeEEEEECC---CCEEEEEECCC--CeEEEEEcCCEEEEE
Confidence 4888899999999999988 89999999884 78999999994 444
No 39
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=30.77 E-value=4.1e+02 Score=32.55 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=72.7
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeecccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005484 526 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 605 (694)
Q Consensus 526 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 605 (694)
+-+.+|-++|.++|=+. |. ...|++..+.--.-. | ...++=|++ .-..+..|+.+||+.-+-+
T Consensus 183 RgL~vl~~~~flScsND-g~----Ir~w~~~ge~l~~~~----g---htn~vYsis-----~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 183 RGLAVLDDSHFLSCSND-GS----IRLWDLDGEVLLEMH----G---HTNFVYSIS-----MALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred eeeEEecCCCeEeecCC-ce----EEEEeccCceeeeee----c---cceEEEEEE-----ecCCCCeEEEecCCceEEE
Confidence 44678888888887654 32 788998433322211 1 122333443 3346789999999988888
Q ss_pred cCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEEEe--ecCCchhHH
Q 005484 606 SPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFVQT--RQPGALFFS 661 (694)
Q Consensus 606 s~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv~~--~~~g~~~~s 661 (694)
=.+|...+.+.||+-.+=-.-+-+ || ||+|.++|| ||.|-+. |..+.+.+=
T Consensus 246 W~~~e~~q~I~lPttsiWsa~~L~-Ng----DIvvg~SDG~VrVfT~~k~R~As~evl~ 299 (745)
T KOG0301|consen 246 WKKDECVQVITLPTTSIWSAKVLL-NG----DIVVGGSDGRVRVFTVDKDRKASDEVLK 299 (745)
T ss_pred eecCceEEEEecCccceEEEEEee-CC----CEEEeccCceEEEEEecccccCCHHHHH
Confidence 777799999999985443222211 33 799999999 7777665 346655433
No 40
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.19 E-value=1.1e+02 Score=38.06 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=72.6
Q ss_pred ccccceEEeCCCCCCCCccccccEEEEecCceEEEecCCCCCCcceeeeeeecccccccCCCCCCCCccceeeeeeEEee
Q 005484 505 EVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFS 584 (694)
Q Consensus 505 evv~Pl~i~~~~g~~~r~~~~~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~ 584 (694)
+..+|+|.+..++...+-+...-.+|.+..|.++ ...+..|+..|.
T Consensus 200 ~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~----------------~~~~l~ws~~P~------------------ 245 (877)
T KOG2063|consen 200 ESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIA----------------QRGTLVWSEVPL------------------ 245 (877)
T ss_pred ccCCCeEEEecCCceEEEccCceEEEEecCCccc----------------CCCceEecccch------------------
Confidence 4568999988766444445556777777777554 224455555421
Q ss_pred cccCCccceEEEeecceEEEEcC-CCCEEEEE-eCCCCCCcccEEeecCCCCcccEEEecC-CeEEEEEEeec
Q 005484 585 LRVHDNQQMILAGGDQEAVVISP-GGSILTSI-DLPAPPTHALVCEDFSNDGLTDVILMTS-NGVYGFVQTRQ 654 (694)
Q Consensus 585 lr~~~~~~~IlA~Ge~~~~ils~-~G~vl~s~-~Lp~pP~ap~iv~DfngDG~nDiIVvT~-~Giygfv~~~~ 654 (694)
...-..|||+|.+...+-|-|. +|..+.|+ +|+..+. +.+.++ -+|++++ +++|-++-+..
T Consensus 246 -~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~~~~~~----l~s~~~----~i~~~~~~s~v~~L~p~~~ 309 (877)
T KOG2063|consen 246 -SVVVESPYLIALLDRSVEIRSKLDGQLVQSITPLSNGRS----LLSAHN----GIIFVASLSNVWILVPVSN 309 (877)
T ss_pred -hhcccCceEEEEccccEEEEeccCHHHhhccccccccce----eeecCC----cEEEEEeccceEEEEeccc
Confidence 1234679999999999999995 88888888 6655432 223222 7888888 89999887774
No 41
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.50 E-value=36 Score=33.54 Aligned_cols=28 Identities=43% Similarity=0.622 Sum_probs=21.7
Q ss_pred cCCCeeEEEe--cCCCCe----eeeccCCCceeE
Q 005484 407 ASGRTVCKLH--LQEGGL----HADINGDGVLDH 434 (694)
Q Consensus 407 ~SGrtlckl~--L~~~~l----~aDINgDGvlD~ 434 (694)
.+|.++.+.. |++|.| +.|.||||-||-
T Consensus 72 it~dpv~~~f~~Lk~G~YAvaa~qD~nGdgkldt 105 (151)
T COG4704 72 ITGDPVSKSFYGLKPGKYAVAAFQDENGDGKLDT 105 (151)
T ss_pred ccCCchhheeecCCCccEEEEEEEecCCCccccc
Confidence 4788888855 788754 469999999874
No 42
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=27.49 E-value=55 Score=28.41 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=33.6
Q ss_pred eEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEEee
Q 005484 601 EAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTR 653 (694)
Q Consensus 601 ~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Giygfv~~~ 653 (694)
.+.|.|.+|+++.+++|+..+.. ...|.=||.++==-.-.+|.|-|..+.
T Consensus 28 ~v~I~d~~G~~V~t~~~~~~~~G---~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISLGSQSAG---EHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEETTS-EEEEEEEEECSSE---EEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEcCCcCCc---eEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 68888999999999999666543 456777877775556678888886654
No 43
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=26.23 E-value=1.3e+02 Score=38.29 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=53.5
Q ss_pred ccccCCCCCCCCccceeeeeeEEeecccCCccceEEEe--------ecceEEEE--cC-CCCEEE--EEeCCCCC-----
Q 005484 560 TWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG--------GDQEAVVI--SP-GGSILT--SIDLPAPP----- 621 (694)
Q Consensus 560 ~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~--------Ge~~~~il--s~-~G~vl~--s~~Lp~pP----- 621 (694)
.|.......|.--+.+|=-||.+-=+..+|..++|++. ++.-.|-+ .. .|..-. ++.+|.+|
T Consensus 307 ~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~~~~~~~RFG 386 (1030)
T KOG3637|consen 307 SLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQITLRGPGGPSGRFG 386 (1030)
T ss_pred ccceeeeeeeeeehhhcCeeEEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCCCCcccceeEecCCCcccchh
Confidence 56555444432112566778888888888877755442 12222222 22 343322 23444442
Q ss_pred CcccEEeecCCCCcccEEEecC------CeEEEEEEee
Q 005484 622 THALVCEDFSNDGLTDVILMTS------NGVYGFVQTR 653 (694)
Q Consensus 622 ~ap~iv~DfngDG~nDiIVvT~------~Giygfv~~~ 653 (694)
.|=--++|+|+||.|||.|--- +-||.|--..
T Consensus 387 ~Ala~LGDlN~DG~nDVAVGAP~eg~~~GaVYIy~Gs~ 424 (1030)
T KOG3637|consen 387 SALAALGDLNQDGYNDVAVGAPFEGDNQGAVYIYHGSK 424 (1030)
T ss_pred hhhhcccCcccCCCCceEEeCCcCCCCCceEEEEcCCC
Confidence 2344578999999999999743 2389995443
No 44
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=25.83 E-value=71 Score=22.92 Aligned_cols=19 Identities=16% Similarity=0.414 Sum_probs=15.8
Q ss_pred EEeecceEEEEcCCCCEEE
Q 005484 595 LAGGDQEAVVISPGGSILT 613 (694)
Q Consensus 595 lA~Ge~~~~ils~~G~vl~ 613 (694)
||.|+.+.++|+.+|++..
T Consensus 4 ia~G~~ht~al~~~g~v~~ 22 (30)
T PF13540_consen 4 IACGGYHTCALTSDGEVYC 22 (30)
T ss_dssp EEEESSEEEEEE-TTEEEE
T ss_pred EEecCCEEEEEEcCCCEEE
Confidence 7899999999999998754
No 45
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=24.47 E-value=44 Score=42.25 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=21.8
Q ss_pred cEEeecCCCCcccEEEec---------CCe-EEEEEEeec
Q 005484 625 LVCEDFSNDGLTDVILMT---------SNG-VYGFVQTRQ 654 (694)
Q Consensus 625 ~iv~DfngDG~nDiIVvT---------~~G-iygfv~~~~ 654 (694)
+-+.|+|+||.+||||-- ..| ||-|.+...
T Consensus 327 l~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~ 366 (1030)
T KOG3637|consen 327 LAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGL 366 (1030)
T ss_pred EEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCC
Confidence 456899999999977642 134 888876653
No 46
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=23.05 E-value=2.9e+02 Score=28.83 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.8
Q ss_pred ccceEEEeecceEEEEcCCCCEEEEE
Q 005484 590 NQQMILAGGDQEAVVISPGGSILTSI 615 (694)
Q Consensus 590 ~~~~IlA~Ge~~~~ils~~G~vl~s~ 615 (694)
.+|+|+. ++|.|.+|.++|.-
T Consensus 83 ~d~~Vld-----AsIYd~~G~lLA~S 103 (210)
T PF10144_consen 83 KDPFVLD-----ASIYDADGVLLAQS 103 (210)
T ss_pred cCCeEeE-----EEEECCCCCEEEEc
Confidence 4788885 78999999999986
Done!