Query 005484
Match_columns 694
No_of_seqs 52 out of 54
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 18:38:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005484.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1990-1993//hhsearch_pdb/005484hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zux_A YESW protein; beta-prop 1.0 1 1 39.9 7.4 66 589-656 461-535 (591)
2 2zuy_A YESX protein; beta-prop 1.0 1 1 37.8 6.2 35 622-656 520-556 (620)
3 2zux_A YESW protein; beta-prop 1.0 1 1 31.0 11.1 18 51-68 117-134 (591)
4 2zuy_A YESX protein; beta-prop 1.0 1 1 29.1 10.1 28 390-417 382-413 (620)
5 3k6s_A Integrin alpha-X; cell 1.0 1 1 28.0 7.6 15 127-141 229-243 (1095)
6 3v4v_A Integrin alpha-4; cell 1.0 1 1 27.3 6.8 13 424-436 405-417 (597)
7 4a7k_A Aldos-2-ulose dehydrata 1.0 1 1 25.1 8.3 26 52-77 98-134 (900)
8 3od9_A Putative exported prote 1.0 1 1 23.8 2.1 19 625-643 64-82 (135)
9 1w6s_A Methanol dehydrogenase 1.0 1 1 23.4 13.8 72 533-628 451-523 (599)
10 2bwr_A Psathyrella velutina le 1.0 1 1 23.1 10.4 32 622-653 336-367 (401)
No 1
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=1.00 E-value=1 Score=39.90 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=40.8
Q ss_pred CCCCEEEEEECCEEEEECC-CCCEEEEEECCC------CCCCCCEEEECCCCCCCCEEEECCC--EEEEEEEEECCC
Q ss_conf 9653499830224999969-998779974899------9976617850589985239996279--189999920588
Q 005484 589 DNQQMILAGGDQEAVVISP-GGSILTSIDLPA------PPTHALVCEDFSNDGLTDVILMTSN--GVYGFVQTRQPG 656 (694)
Q Consensus 589 ~~~~~IlA~Ge~~~~ils~-~G~il~s~~Lp~------pP~ap~iv~DfngDG~nDiIVvT~~--Giygfv~~~~~g 656 (694)
+-...||..+ .+.--+. +|+..+-...+. ----|.+..|+-||..-.||+.|.+ .++.|.++.-+.
T Consensus 461 Dl~relld~~--~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 461 DLLREQLDSN--RIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp SSSCEEEETT--EEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred CCCHHHHCCC--EEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCC
T ss_conf 8737662773--27762567983357996245322787778873587202667468999848999699995899876
No 2
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=37.83 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.2
Q ss_pred CCCCEEEECCCCCCCCEEEECCCE--EEEEEEEECCC
Q ss_conf 766178505899852399962791--89999920588
Q 005484 622 THALVCEDFSNDGLTDVILMTSNG--VYGFVQTRQPG 656 (694)
Q Consensus 622 ~ap~iv~DfngDG~nDiIVvT~~G--iygfv~~~~~g 656 (694)
.-|.+..|+-||-.-.||+.|.+. +..|..+.-+.
T Consensus 520 ~~P~l~aDi~GDWREEvi~~t~D~~~LrIYtt~~pT~ 556 (620)
T 2zuy_A 520 GNPVLQANLFGDWREEVIWRTEDSSALRIYTTTHLTR 556 (620)
T ss_dssp CBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred CCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 8801261144657002899728999699991898888
No 3
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=1.00 E-value=1 Score=30.95 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=14.1
Q ss_pred CEEECCCCCCCEEEEEEC
Q ss_conf 859846999942499965
Q 005484 51 PIVADLNGDGRKEVLVAT 68 (694)
Q Consensus 51 PIvtDLdGDG~~eiivat 68 (694)
+.|.||||||+.|||+..
T Consensus 117 ~sVgDLDGDG~~EiVv~~ 134 (591)
T 2zux_A 117 ASVGDVDGDGQYELILKW 134 (591)
T ss_dssp EEEECSSSSSSCEEEEEE
T ss_pred CEEEECCCCCCEEEEEEE
T ss_conf 869952799987899998
No 4
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=29.13 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=17.0
Q ss_pred CCEEEEEC----CCCEEEEECCCCCEEEEEEC
Q ss_conf 71999811----46416998238971388835
Q 005484 390 PNVVVAHQ----KEGIEAVHLASGRTVCKLHL 417 (694)
Q Consensus 390 PNViV~H~----~~GIEViHL~SGrtlckl~L 417 (694)
.-|+..|. ..|.....-.||+.|-+..-
T Consensus 382 lev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~ 413 (620)
T 2zuy_A 382 LEVFQVHEDATKPYGLSLRDAGTGEILWGVHA 413 (620)
T ss_dssp CEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred CEEEEEECCCCCCCCEEEEECCCCCEEEEECC
T ss_conf 78999735789887549898899858997268
No 5
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=1.00 E-value=1 Score=27.98 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=11.3
Q ss_pred CCCEEEEEEEECCEE
Q ss_conf 873279999946909
Q 005484 127 QPLKQVLVVVTSGWS 141 (694)
Q Consensus 127 ~~~kqVIvVVtsdw~ 141 (694)
...+++|+++|+|..
T Consensus 229 ~~~~kviIllTDG~~ 243 (1095)
T 3k6s_A 229 RDAAKILIVITDGKK 243 (1095)
T ss_dssp SSSEEEEEEEESSCC
T ss_pred CCCCEEEEEEECCCC
T ss_conf 899729999928986
No 6
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=1.00 E-value=1 Score=27.27 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.1
Q ss_pred EECCCCCCEEEEE
Q ss_conf 4215997235797
Q 005484 424 ADINGDGVLDHVQ 436 (694)
Q Consensus 424 aDINgDGvlD~V~ 436 (694)
.||||||..|-+-
T Consensus 405 ~DlngDG~~DL~V 417 (597)
T 3v4v_A 405 IDADNNGYVDVAV 417 (597)
T ss_dssp ECSSSSSSCEEEE
T ss_pred CCCCCCCCCCEEE
T ss_conf 1348899703899
No 7
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=1.00 E-value=1 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEECCCCCCCEEEEEECC-----------CCEEEEEC
Q ss_conf 598469999424999658-----------85399950
Q 005484 52 IVADLNGDGRKEVLVATH-----------DAKIQVLE 77 (694)
Q Consensus 52 IvtDLdGDG~~eiivat~-----------d~ki~v~~ 77 (694)
...||||||+.|||++.. +++|..|.
T Consensus 98 ~aaDLDGDGdlDVVvas~fg~t~dd~n~~gG~V~W~E 134 (900)
T 4a7k_A 98 HYADITKNGFNDVIITDQYGSSMDDIWAYGGRVSWLE 134 (900)
T ss_dssp EEECTTCSSBCEEEEEECCEEETTEECTTCCEEEEEC
T ss_pred EEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
T ss_conf 7886079998217995145765444456776799995
No 8
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=1.00 E-value=1 Score=23.78 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=10.0
Q ss_pred CEEEECCCCCCCCEEEECC
Q ss_conf 1785058998523999627
Q 005484 625 LVCEDFSNDGLTDVILMTS 643 (694)
Q Consensus 625 ~iv~DfngDG~nDiIVvT~ 643 (694)
..+.|+|||+.-.|||.|.
T Consensus 64 a~laDlngd~~~eLiVt~~ 82 (135)
T 3od9_A 64 LKLLDLNGDKQPELIVVVE 82 (135)
T ss_dssp EEEECSSSSSSCEEEEEEE
T ss_pred EEEEECCCCCCEEEEEEEE
T ss_conf 9987048998736999999
No 9
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=1.00 E-value=1 Score=23.43 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCEEEEECC-CCCE
Q ss_conf 384599961898888642222230433322688889877666122124874214579653499830224999969-9987
Q 005484 533 NRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-GGSI 611 (694)
Q Consensus 533 s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~G~i 611 (694)
..|.++|+++. .++.+|+...+..+.. | . +. ..+. -..++..+..+..+|. +|++
T Consensus 451 ~~G~l~A~D~~----tG~~~W~~~~~~~~~~-----g----~-----~~-----tagg-~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 451 GLGQIKAYNAI----TGDYKWEKMERFAVWG-----G----T-----MA-----TAGD-LVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CCEEEEEECTT----TCCEEEEEEESSCCCS-----B----C-----EE-----ETTT-EEEEECTTSEEEEEETTTCCE
T ss_pred CCCEEEEEECC----CCCEEEEECCCCCCCC-----C----C-----EE-----ECCC-EEEEECCCCEEEEEECCCCCE
T ss_conf 85769999799----9978867058998667-----6----1-----59-----4699-899987999699998999979
Q ss_pred EEEEECCCCCCCCCEEE
Q ss_conf 79974899997661785
Q 005484 612 LTSIDLPAPPTHALVCE 628 (694)
Q Consensus 612 l~s~~Lp~pP~ap~iv~ 628 (694)
|-+.+|++...+.|++-
T Consensus 507 lW~~~l~~g~~~~P~~y 523 (599)
T 1w6s_A 507 LWKFKIPSGAIGYPMTY 523 (599)
T ss_dssp EEEEECSSCCCSCCEEE
T ss_pred EEEEECCCCCEECCEEE
T ss_conf 77850899967355799
No 10
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=1.00 E-value=1 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=25.7
Q ss_pred CCCCEEEECCCCCCCCEEEECCCEEEEEEEEE
Q ss_conf 76617850589985239996279189999920
Q 005484 622 THALVCEDFSNDGLTDVILMTSNGVYGFVQTR 653 (694)
Q Consensus 622 ~ap~iv~DfngDG~nDiIVvT~~Giygfv~~~ 653 (694)
...+.+.||||||..||++...+.++.|.-..
T Consensus 336 ~~~~~~~D~dgDG~~Dlv~~~~~~~~~~~n~g 367 (401)
T 2bwr_A 336 KHPRFVVDLTGDGCADIVGFGENSVWACMNKG 367 (401)
T ss_dssp TCCEEEECSSSSSSCEEEEECSSCEEEEEECS
T ss_pred CCEEEEECCCCCCCCCEEEECCCCEEEEEECC
T ss_conf 64555471589997308998899589999688
Done!