Citrus Sinensis ID: 005485
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 694 | 2.2.26 [Sep-21-2011] | |||||||
| P08770 | 807 | Putative AC transposase O | N/A | no | 0.765 | 0.657 | 0.298 | 6e-73 | |
| P03010 | 839 | Putative AC9 transposase | N/A | no | 0.762 | 0.630 | 0.285 | 4e-67 | |
| Q80WQ9 | 1168 | Zinc finger BED domain-co | yes | no | 0.776 | 0.461 | 0.215 | 6e-17 | |
| O75132 | 1171 | Zinc finger BED domain-co | yes | no | 0.821 | 0.486 | 0.210 | 9e-17 | |
| O96006 | 694 | Zinc finger BED domain-co | no | no | 0.850 | 0.850 | 0.205 | 8e-15 |
| >sp|P08770|TRA1_MAIZE Putative AC transposase OS=Zea mays PE=2 SV=2 | Back alignment and function desciption |
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Score = 275 bits (704), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 168/563 (29%), Positives = 283/563 (50%), Gaps = 32/563 (5%)
Query: 125 ISSISFNQDRSTQDIAKMIIVHEYPPHIVEHPAFIDFVHTLQPQFNVASFNTIQGDCVAI 184
I +++ S + + II+HEYP +IVEH F++FV +L+P F + S T + + +
Sbjct: 218 IEPYKYDEVVSLKKLHLAIIMHEYPFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDL 277
Query: 185 YLREKQRLLNFISGIHGRVNLALDLWSSNQSVGYAVLTGHFIDGDWNLHHRVLNVVMVPS 244
YL EK++L + + R + +D+W+S Q+ Y +T H+ID DW L R++ V
Sbjct: 278 YLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEG 337
Query: 245 PDSDVAFNQALASCLSDWRLENKLLTLTLDRSFSNE-TINGNLRGFLSVKNPFMLNCQLI 303
+ +Q + + W +E KL L+LD + +NE ++ + + + +
Sbjct: 338 RHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFF 397
Query: 304 KGNCYARVISRLAQDALGAIWETVDKIRASVKYVKTSDTHEEKFLELKERLQVPSTKELF 363
C +++ +A+D L I T++KI+A V VK+S E+ ++ + +K +
Sbjct: 398 HVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGIS 457
Query: 364 IDDQTKWNTTYHMLVAAHELKEVFACLETFDP-DYKIATPTMDDWKQVEILCTYLKYFFD 422
D T+WN+TY ML A K L+T DP Y P ++WK L LK FFD
Sbjct: 458 YDVSTRWNSTYLMLRDALYYKPALIRLKTSDPRRYDAICPKAEEWKMALTLFKCLKKFFD 517
Query: 423 AANILTSPTYPTASVFYHEVSKIQAELTQAAMSEEPFTSYLTKPLKERFDEYWKDCFLVL 482
+L+ Y TA++FY +I+ + Q + E+ + + E+F++YWK + L
Sbjct: 518 LTELLSGTQYSTANLFYKGFCEIKDLIDQWCVHEKFVIRRMAVAMSEKFEKYWKVSNIAL 577
Query: 483 AIAVVIDPRFKMKLIEFSFSRIYGEDAGMWIKAVDDGLHELFHEYLVQMLALPDTFMDEG 542
A+A +DPR+K LIEF + +G+ + VDD V+++ F
Sbjct: 578 AVACFLDPRYKKILIEFYMKKFHGDSYKV---HVDD---------FVRVIRKLYQFYSSC 625
Query: 543 LEVIPKSEASREETLHAGNIEEGTPQEHSQDLSLISIGDGLSDFEVYISE-DTSGQPMRS 601
PK++ + +++ + T E+ D +F+ Y+ E Q +
Sbjct: 626 SPSAPKTKTTTNDSM------DDTLMENEDD-----------EFQNYLHELKDYDQVESN 668
Query: 602 ELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDILSIPFSTVPTDSVFDTVSKK 661
ELD+Y+ E LL + FDIL WWR A+YP L+++A D+L+I STV ++S F +
Sbjct: 669 ELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRV 728
Query: 662 IDSYRSSLRPVTLEALICAKDWL 684
+D YR+ L +EALIC KDW+
Sbjct: 729 VDPYRNRLGSEIVEALICTKDWV 751
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Zea mays (taxid: 4577) |
| >sp|P03010|TRAC9_MAIZE Putative AC9 transposase OS=Zea mays PE=4 SV=1 | Back alignment and function description |
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| >sp|Q80WQ9|ZBED4_MOUSE Zinc finger BED domain-containing protein 4 OS=Mus musculus GN=Zbed4 PE=2 SV=1 | Back alignment and function description |
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| >sp|O75132|ZBED4_HUMAN Zinc finger BED domain-containing protein 4 OS=Homo sapiens GN=ZBED4 PE=1 SV=2 | Back alignment and function description |
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| >sp|O96006|ZBED1_HUMAN Zinc finger BED domain-containing protein 1 OS=Homo sapiens GN=ZBED1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 694 | ||||||
| 224134927 | 635 | predicted protein [Populus trichocarpa] | 0.910 | 0.995 | 0.696 | 0.0 | |
| 147865236 | 1045 | hypothetical protein VITISV_014020 [Viti | 0.969 | 0.644 | 0.657 | 0.0 | |
| 356565167 | 1154 | PREDICTED: uncharacterized protein LOC10 | 0.927 | 0.558 | 0.586 | 0.0 | |
| 356546116 | 1100 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.599 | 0.578 | 0.0 | |
| 224128472 | 1099 | predicted protein [Populus trichocarpa] | 0.769 | 0.485 | 0.693 | 0.0 | |
| 224144150 | 666 | predicted protein [Populus trichocarpa] | 0.909 | 0.947 | 0.574 | 0.0 | |
| 297738996 | 839 | unnamed protein product [Vitis vinifera] | 0.854 | 0.706 | 0.603 | 0.0 | |
| 356561757 | 1038 | PREDICTED: zinc finger BED domain-contai | 0.917 | 0.613 | 0.546 | 0.0 | |
| 224118238 | 639 | predicted protein [Populus trichocarpa] | 0.899 | 0.976 | 0.541 | 0.0 | |
| 224112645 | 639 | predicted protein [Populus trichocarpa] | 0.899 | 0.976 | 0.541 | 0.0 |
| >gi|224134927|ref|XP_002327524.1| predicted protein [Populus trichocarpa] gi|222836078|gb|EEE74499.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/663 (69%), Positives = 537/663 (80%), Gaps = 31/663 (4%)
Query: 34 KRRRKKSIVWDYFTVETVDAGCTRACCNQCKKSFAYITGSKLAGTSHLKRHITMGICPVS 93
KRRRKKSIVW++FT+ETV AGC RACC QCKKSFAYITG+KLAGTSHLKRHI +GICPVS
Sbjct: 1 KRRRKKSIVWEHFTIETVGAGCMRACCKQCKKSFAYITGTKLAGTSHLKRHIALGICPVS 60
Query: 94 RQKNQQTPNTPSTKPGSVTDPPKRRYRASPGISSISFNQDRSTQDIAKMIIVHEYPPHIV 153
RQKN+ +P TP K G PPK+R+RASPG S+I +QDR +IAKMII H+YP HIV
Sbjct: 61 RQKNESSPYTPGLKTG----PPKKRFRASPGFSAIPLDQDRCNHEIAKMIIQHDYPLHIV 116
Query: 154 EHPAFIDFVHTLQPQFNVASFNTIQGDCVAIYLREKQRLLNFISGIHGRVNLALDLWSSN 213
EHPAFIDFV TLQP +N+ + NTIQG+CVA+YLREKQ LLN I GI GRVNL L L +SN
Sbjct: 117 EHPAFIDFVRTLQPHYNMMNLNTIQGECVAVYLREKQSLLNLIGGIPGRVNLTLYLGTSN 176
Query: 214 QSVGYAVLTGHFIDGDWNLHHRVLNVVMVPSPDSDVAFNQALASCLSDWRLENKLLTLTL 273
+GYA LTGHF+DGDWNL R+LNVV +P DSD AFN+A+ SCLSDW+LE+KL TLTL
Sbjct: 177 LDIGYAFLTGHFVDGDWNLQQRILNVVTLPFYDSDYAFNEAIVSCLSDWQLESKLFTLTL 236
Query: 274 DRSFSNETINGNLRGFLSVKNPFMLNCQLIKGNCYARVISRLAQDALGAIWETVDKIRAS 333
D+SFSNETI GNLRG LSVKNPF+L+ QL+KGNCYARV+SRLAQDAL A + V +IR S
Sbjct: 237 DQSFSNETIIGNLRGLLSVKNPFVLHGQLLKGNCYARVLSRLAQDALSATGDIVMRIRES 296
Query: 334 VKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYHMLVAAHELKEVFACLETF 393
VKYVKTS+ H+EKF EL+++LQVPSTK+L IDDQTKWNTTY MLVAA ELKEVFACL+T
Sbjct: 297 VKYVKTSEAHDEKFTELRQQLQVPSTKDLIIDDQTKWNTTYQMLVAACELKEVFACLDTS 356
Query: 394 DPDYKIATPTMDDWKQVEILCTYLKYFFDAANILTSPTYPTASVFYHEVSKIQAELTQAA 453
DP YKI P++DDW++ +ILCTYLK +DAANILT P+YP A VFYHEV KIQ ELT AA
Sbjct: 357 DPVYKI-NPSIDDWQKADILCTYLKLLYDAANILTGPSYPPAHVFYHEVYKIQLELTNAA 415
Query: 454 MSEEPFTSYLTKPLKERFDEYWKDCFLVLAIAVVIDPRFKMKLIEFSFSRIYGEDAGMWI 513
MS +PF LTKPLKE+FD+YWKDCFL+LAIAVV+DPRFKMKL+EFSF +++GEDAGMWI
Sbjct: 416 MSHDPFVRNLTKPLKEKFDQYWKDCFLILAIAVVMDPRFKMKLLEFSFPKVFGEDAGMWI 475
Query: 514 KAVDDGLHELFHEYLVQMLALPDTFMDEGLEVIPKSEASREETLHAGNIEEGTPQE-HSQ 572
K+VDDG+HEL YL LP A ++EEG PQE H+Q
Sbjct: 476 KSVDDGIHELLVGYLTPNFHLP-----------------------ATDVEEGLPQELHTQ 512
Query: 573 DLSLISIGDGLSDFEVYISEDTSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYP 632
DL ++SIGDGLSDF++YISE TSGQ +SELDQYLEE LLPR +FD+L WW+LN+ KYP
Sbjct: 513 DLPMLSIGDGLSDFDIYISEITSGQHFKSELDQYLEESLLPRVHEFDVLGWWKLNRLKYP 572
Query: 633 TLSRMASDILSIPFSTVPTDSVFDTVSKKIDSYRSSLRPVTLEALICAKDWLQYGS--LS 690
TLS+MA DILSIP STV DSVFDT +K+IDSYRSSLRPVTLEALICAKDWLQ+GS LS
Sbjct: 573 TLSKMAVDILSIPVSTVTPDSVFDTENKRIDSYRSSLRPVTLEALICAKDWLQHGSSLLS 632
Query: 691 SDS 693
S S
Sbjct: 633 SPS 635
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865236|emb|CAN81954.1| hypothetical protein VITISV_014020 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356565167|ref|XP_003550816.1| PREDICTED: uncharacterized protein LOC100783258 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356546116|ref|XP_003541477.1| PREDICTED: uncharacterized protein LOC100800468 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224128472|ref|XP_002329012.1| predicted protein [Populus trichocarpa] gi|222839683|gb|EEE78006.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224144150|ref|XP_002325202.1| predicted protein [Populus trichocarpa] gi|222866636|gb|EEF03767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297738996|emb|CBI28241.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356561757|ref|XP_003549145.1| PREDICTED: zinc finger BED domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224118238|ref|XP_002331504.1| predicted protein [Populus trichocarpa] gi|222873840|gb|EEF10971.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224112645|ref|XP_002332734.1| predicted protein [Populus trichocarpa] gi|222833156|gb|EEE71633.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 694 | ||||||
| TAIR|locus:2100809 | 696 | DAYSLEEPER "DAYSLEEPER" [Arabi | 0.757 | 0.755 | 0.515 | 2.6e-184 | |
| TAIR|locus:2027468 | 690 | AT1G18560 [Arabidopsis thalian | 0.670 | 0.673 | 0.199 | 7.9e-27 | |
| MGI|MGI:2682302 | 1168 | Zbed4 "zinc finger, BED domain | 0.644 | 0.382 | 0.217 | 3.2e-19 | |
| RGD|1305949 | 1170 | Zbed4 "zinc finger, BED-type c | 0.644 | 0.382 | 0.217 | 1.1e-18 | |
| UNIPROTKB|O75132 | 1171 | ZBED4 "Zinc finger BED domain- | 0.670 | 0.397 | 0.221 | 1.2e-17 | |
| ZFIN|ZDB-GENE-041210-305 | 1249 | zbed4 "zinc finger, BED domain | 0.685 | 0.381 | 0.211 | 5.2e-17 | |
| UNIPROTKB|E1BQN1 | 1172 | ZBED4 "Uncharacterized protein | 0.670 | 0.396 | 0.209 | 1.4e-16 | |
| UNIPROTKB|F1PWQ3 | 1165 | ZBED4 "Uncharacterized protein | 0.668 | 0.398 | 0.234 | 2.2e-16 | |
| UNIPROTKB|O96006 | 694 | ZBED1 "Zinc finger BED domain- | 0.672 | 0.672 | 0.222 | 3.2e-15 | |
| UNIPROTKB|G3X7K6 | 697 | ZBED1 "Uncharacterized protein | 0.870 | 0.866 | 0.211 | 4e-11 |
| TAIR|locus:2100809 DAYSLEEPER "DAYSLEEPER" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1446 (514.1 bits), Expect = 2.6e-184, Sum P(2) = 2.6e-184
Identities = 279/541 (51%), Positives = 376/541 (69%)
Query: 10 PDT-PI--TPSSPSGNRELMNLETQPNKRRRKKSIVWDYFTVETVDAGCTRACCNQCKKS 66
P+T PI T + E+++ ETQP KRR+KKS+VW++FT+E V+ C RA C C +S
Sbjct: 35 PETQPIEETALEVYNDTEMVSPETQPIKRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQS 94
Query: 67 FAYITGSKLAGTSHLKRHITMGICP--VSRQKNQQTP--NTPSTKPGSVTDPPKRRYRAS 122
FAY G+K+AGTSHLKRHI G CP + N P +TP T TD P+RRYR+
Sbjct: 95 FAYSNGNKVAGTSHLKRHIFKGTCPALIHTHDNDNNPLMSTPYTPK---TDTPRRRYRSQ 151
Query: 123 PGISS-ISFNQDRSTQDIAKMIIVHEYPPHIVEHPAFIDFVHTLQPQFNVASFNTIQGDC 181
S ++FNQD+ Q+IAKMII+H+YP H+V+HP F+ FV ++QP F+ SFN +QGDC
Sbjct: 152 NNASPYVAFNQDKCRQEIAKMIIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDC 211
Query: 182 VAIYLREKQRLLNFISGIHGRVNLALDLWSSNQSVGYAVLTGHFIDGDWNLHHRVLNVVM 241
VA YL EKQ ++ + GI GR L LD W+S ++GY +T H+ID DW + ++LNV+M
Sbjct: 212 VATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLM 271
Query: 242 VPSPDSDVAFNQALASCLSDWRLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQ 301
P++D A + A+A+C+S+W LE KL +T + SN + N+R L +KNP +L+ Q
Sbjct: 272 ESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASNSAVE-NIRPQLCIKNPGILDGQ 330
Query: 302 LIKGNCYARVISRLAQDALGAIWETVDKIRASVKYVKTSDTHEEKFLELKERLQVPSTKE 361
L+ GNC AR LA+D L + + IR SVK+VKTS++HEE+F ELKE+LQVPS K
Sbjct: 331 LVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEKV 390
Query: 362 LFIDDQTKWNTTYHMLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEILCTYLKYFF 421
L +DDQT+WNTTY MLVAA ELKEVF+CL+T DPDYK P+ +DW+ VE LCT+LK F
Sbjct: 391 LSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDYK-KPPSAEDWRHVEALCTFLKPLF 449
Query: 422 DAANILTSPTYPTASVFYHEVSKIQAELTQAAMSEEPFTSYLTKPLKERFDEYWKDCFLV 481
+A + L S P+A F+HEV K Q++L++A E+PF + + K ++E+ D+YW+DC LV
Sbjct: 450 EAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKYWRDCSLV 509
Query: 482 LAIAVVIDPRFKMKLIEFSFSRIYGEDAGMWIKAVDDGLHELFHEYLVQMLALPDTFMDE 541
LA+AVV+DPRFKMKL+EFSFS+I+GEDAG IK VDDG+HELF EY+ L P E
Sbjct: 510 LAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDGIHELFTEYMA--LPSPQNTTSE 567
Query: 542 G 542
G
Sbjct: 568 G 568
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| TAIR|locus:2027468 AT1G18560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:2682302 Zbed4 "zinc finger, BED domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1305949 Zbed4 "zinc finger, BED-type containing 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O75132 ZBED4 "Zinc finger BED domain-containing protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041210-305 zbed4 "zinc finger, BED domain containing 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BQN1 ZBED4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PWQ3 ZBED4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O96006 ZBED1 "Zinc finger BED domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3X7K6 ZBED1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.44.88.1 | hypothetical protein (635 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 694 | |||
| pfam14372 | 101 | pfam14372, DUF4413, Domain of unknown function (DU | 2e-38 | |
| pfam05699 | 82 | pfam05699, Dimer_Tnp_hAT, hAT family dimerisation | 9e-27 | |
| smart00614 | 50 | smart00614, ZnF_BED, BED zinc finger | 6e-11 | |
| pfam02892 | 43 | pfam02892, zf-BED, BED zinc finger | 1e-07 |
| >gnl|CDD|206540 pfam14372, DUF4413, Domain of unknown function (DUF4413) | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-38
Identities = 54/101 (53%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 427 LTSPTYPTASVFYHEVSKIQAELTQAAMSEEPFTSYLTKPLKERFDEYWKDCFLVLAIAV 486
L+ +YPTA++F+HE+ KI+ L + A S++ S + K +KE+FD+YWK L+LAIAV
Sbjct: 1 LSGSSYPTANLFFHEIWKIKLLLREWA-SDDDTLSEMAKAMKEKFDKYWKKINLLLAIAV 59
Query: 487 VIDPRFKMKLIEFSFSRIYGEDAGMWIKAVDDGLHELFHEY 527
V+DPRFK+KL+EF FS++YG+DA +IK V D L ELF EY
Sbjct: 60 VLDPRFKLKLLEFCFSKLYGDDAEEYIKEVRDTLKELFDEY 100
|
This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases. Length = 101 |
| >gnl|CDD|218702 pfam05699, Dimer_Tnp_hAT, hAT family dimerisation domain | Back alignment and domain information |
|---|
| >gnl|CDD|214746 smart00614, ZnF_BED, BED zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 694 | |||
| KOG1121 | 641 | consensus Tam3-transposase (Ac family) [Replicatio | 100.0 | |
| PF05699 | 86 | Dimer_Tnp_hAT: hAT family C-terminal dimerisation | 99.79 | |
| PF04937 | 153 | DUF659: Protein of unknown function (DUF 659); Int | 99.68 | |
| PF14372 | 101 | DUF4413: Domain of unknown function (DUF4413) | 99.5 | |
| PF14291 | 235 | DUF4371: Domain of unknown function (DUF4371) | 99.43 | |
| PF02892 | 45 | zf-BED: BED zinc finger; InterPro: IPR003656 Zinc | 98.97 | |
| smart00614 | 50 | ZnF_BED BED zinc finger. DNA-binding domain in chr | 98.81 | |
| PF10683 | 68 | DBD_Tnp_Hermes: Hermes transposase DNA-binding dom | 96.56 | |
| PF09237 | 54 | GAGA: GAGA factor; InterPro: IPR015318 Zinc finger | 90.02 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 89.85 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 88.97 | |
| PHA00616 | 44 | hypothetical protein | 86.42 | |
| PF12874 | 25 | zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG | 86.12 | |
| PF13912 | 27 | zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9 | 80.73 |
| >KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=456.19 Aligned_cols=531 Identities=36% Similarity=0.653 Sum_probs=445.2
Q ss_pred CcccchHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhCCCccccCccchHhHHHHHHHHHHHHHHHHHhccCCceEEe
Q 005485 127 SISFNQDRSTQDIAKMIIVHEYPPHIVEHPAFIDFVHTLQPQFNVASFNTIQGDCVAIYLREKQRLLNFISGIHGRVNLA 206 (694)
Q Consensus 127 ~~~~~~~~~~~~l~~~i~~~~~P~~~ve~~~F~~l~~~l~p~~~~ps~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~sl~ 206 (694)
...+++...++.+++||+.+++||+.||+++|+.|+..++|.|.+|++.++...+..+|...+..++..+....|.++++
T Consensus 91 ~~~~~~~~~~~~~~~~ii~~~lp~~~ve~~~~~~~~~~~~P~~~~~~~~t~~~~~~~~~~~~k~~~~~~~~~~~~~v~lT 170 (641)
T KOG1121|consen 91 RQKLDQKVIREAIARMIILHGLPLSTVEEPGFRELLKHLNPNYKLPSRSTLEADVLKIYEAEKPKLKEILEKIIGRVSLT 170 (641)
T ss_pred cccchHHHHHHHHHHHHHhcCCChhhccchhHHHHHHhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHccCCceEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred ecccccc-CCceEEEEEEEEEeCCcceeeeEEEeeeeCCCCchhHHHHHHHHHHHhcCCcccEEEEeccCCCCchHHHHH
Q 005485 207 LDLWSSN-QSVGYAVLTGHFIDGDWNLHHRVLNVVMVPSPDSDVAFNQALASCLSDWRLENKLLTLTLDRSFSNETINGN 285 (694)
Q Consensus 207 ~D~wt~~-~~~~~l~v~~~~i~~~~~~~~~~L~~~~~~~~~t~~~i~~~i~~vl~~~~i~~ki~~i~tD~a~~~~~~~~~ 285 (694)
+|.|++. .+..|+++++||+|.+|+++..+|++. +...|+++.|+..+..++.+|+|..++..++.|| .+......
T Consensus 171 ~d~w~~~~~~~~y~~~t~h~id~~~~l~~~il~~~-~~~~~~~~~i~~~~~~~~~~~~i~~kv~~~~~~n--~~~~~~~~ 247 (641)
T KOG1121|consen 171 TDLWSDSGTDEGYMVLTAHYIDRDWELHNKILSFC-IPPPHLGKALASVLNECLLEWGIEKKVFSITVDN--VNVSNIET 247 (641)
T ss_pred EeeecCCCCCcceEEEEEEEeccchHhhhheeeee-cCCcchHHHHHHHHHHHHHhhChhheEEEEeecc--cchhHHHH
Confidence 9999986 688999999999999999999999999 6677999999999999999999999999999999 45566666
Q ss_pred HHhhhccCCCccccCceeeeechHHHHHHHHHHHH-hhhhHHHHHHHHHhHHhhcChHHHHHHHHHHHhcCCCCCCcccc
Q 005485 286 LRGFLSVKNPFMLNCQLIKGNCYARVISRLAQDAL-GAIWETVDKIRASVKYVKTSDTHEEKFLELKERLQVPSTKELFI 364 (694)
Q Consensus 286 l~~~l~~~~~~~~~~~~~~i~C~~H~Lnl~~~~~l-~~~~~~l~k~~~~~~~~~~S~~~~~~l~~~~~~~~~~~~~~l~~ 364 (694)
+...+...++..+.+...+++|++|.+++++++++ ..+...+.++++.+++++.+..+...|.+.+...+.+.. .+..
T Consensus 248 ~~~~l~~~~~~~~~~~~~~~~C~~~~~~~~v~~~l~~~~~~~l~~ir~~v~~vk~s~~~~~~f~~~~~~~~~~~~-~~~~ 326 (641)
T KOG1121|consen 248 LRDHLKSSNALLLLGKFFHVRCFAHILNLIVQEGLKEEFSSLLEKLRESVKYVKSSESRESSFEECQEQLGIPSD-VLLL 326 (641)
T ss_pred hhHHHhhcccceecceeeeeehhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccc-cccc
Confidence 66666656666677888999999999999999999 689999999999999999999999999999998887764 3333
Q ss_pred CCCccchhHHHHHHHHHhhHHHHhHHhhcCCCCccCCCCHhhHHHHHHHHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 005485 365 DDQTKWNTTYHMLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEILCTYLKYFFDAANILTSPTYPTASVFYHEVSK 444 (694)
Q Consensus 365 ~~~tRW~S~~~~l~~~l~~~~~i~~~~~~~~~~~~~~l~~~~w~~l~~l~~iL~pf~~~~~~l~~~~~~t~~~v~~~~~~ 444 (694)
+.++||++++.|+.++++++.+|..+...+..+.... ++.+|..++.++.+|+||.+.+..+++..+++...+++.++.
T Consensus 327 d~~~~w~st~~ml~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~ts~~~~~~i~~ 405 (641)
T KOG1121|consen 327 DVSTRWNSTYLMLSRALKLKDAFSKLEEEDKSYKSYP-SDEEWNRLEELCDFLQPFSEVTKLLSGSSYPTSNQYFPEIWK 405 (641)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCc-CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 7999999999999999999999999987765555544 788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHhHHHHHHHHHHHhh-hhhchhhhhheecCcchhhhHHHhhhhcccc---chhhHHHHHHHHH
Q 005485 445 IQAELTQAAMSEEPFTSYLTKPLKERFDEYWK-DCFLVLAIAVVIDPRFKMKLIEFSFSRIYGE---DAGMWIKAVDDGL 520 (694)
Q Consensus 445 l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~A~~LdPr~k~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 520 (694)
+...+.......+..+..++..+..+|++||. ....++.+|++||||||..++.+++..+++. ...+.+..+.+.+
T Consensus 406 i~~~l~~~~~~~~~~~~~~a~~m~~k~dk~~~~~~~~~~~~atvlDPR~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 485 (641)
T KOG1121|consen 406 IENLLKTYASGEDEVVRSMAEEMFEKFDKYWSYSICDLLAIATLLDPRFKLKLLESSFEKLYGKDPEDAKEKVESVRDKL 485 (641)
T ss_pred HHHHHHhcccCccHHHHHHHHHHHHHhhhhcccchhHHHHHHHhcChHhHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 98877776666778899999999999999997 2246789999999999999999888887653 4445566678888
Q ss_pred HHHHHHHhhcccCCCCccccCCcccccccchhhhhhhccCCCCCCCCCcCccccccccCCCCCchhhhhhhcccCCCCch
Q 005485 521 HELFHEYLVQMLALPDTFMDEGLEVIPKSEASREETLHAGNIEEGTPQEHSQDLSLISIGDGLSDFEVYISEDTSGQPMR 600 (694)
Q Consensus 521 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 600 (694)
..++.+|.... +....... ..........+ ........|..............
T Consensus 486 ~~l~~~y~~~~----~~~~~~~~----------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 538 (641)
T KOG1121|consen 486 KKLLEEYKQLS----PSNVSNSA----------------------HSWDLLDESPL-EKDAFEYLFEPEVSIDSGSKSGK 538 (641)
T ss_pred HHHHHHHhccC----CCCCCccc----------------------ccccccccccc-ccchhhhhhhHHHHHHhcCCCCC
Confidence 89999997531 10000000 00000000000 01111122222222222225677
Q ss_pred hHHHHHHhcc---CCCCCCCccHHHHHHhhcCCchhHHHHHHHHccccccccccccccccCCccccccccCCCHHHHHHH
Q 005485 601 SELDQYLEEF---LLPRTQDFDILDWWRLNQAKYPTLSRMASDILSIPFSTVPTDSVFDTVSKKIDSYRSSLRPVTLEAL 677 (694)
Q Consensus 601 ~El~~y~~~~---~~~~~~~~dpl~~W~~~~~~fP~L~~lA~~~LsiPass~~~ER~FS~~~~~~t~~R~~L~~~~le~l 677 (694)
.+++.|+.++ ..+....++||+||+.+..+||.|+.||+++|++|++++..|+.|+..++++++.|++|.|.+++.+
T Consensus 539 ~~l~~y~~e~~~~~~~~~~~~~~l~~w~~~~~~y~~ls~~a~d~l~~p~~~~~~e~~f~~~~~~~~~~r~~l~~~~~~~l 618 (641)
T KOG1121|consen 539 SELDHYLSESPRLLMPSFLDADVLQWWKGNGTRYPELSSMARDILSIPITSVASESSFSIGGRVLNKYRSRLLPENVQAL 618 (641)
T ss_pred chHHHHHhhhhhhhccccccccHHHHhhccCcccchHHHHHHHHHcCcccCccchhhcccCceecCchhccCCchhhHHh
Confidence 9999999996 4445568899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCC
Q 005485 678 ICAKDWLQYGSL 689 (694)
Q Consensus 678 ~~l~~~~~~~~~ 689 (694)
+|.++|++.+..
T Consensus 619 ~c~~~~~~~~~~ 630 (641)
T KOG1121|consen 619 ICTRNWLPGFTE 630 (641)
T ss_pred hchHhhhhhhcc
Confidence 999999998754
|
|
| >PF05699 Dimer_Tnp_hAT: hAT family C-terminal dimerisation region; InterPro: IPR008906 This dimerisation domain is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily) | Back alignment and domain information |
|---|
| >PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function | Back alignment and domain information |
|---|
| >PF14372 DUF4413: Domain of unknown function (DUF4413) | Back alignment and domain information |
|---|
| >PF14291 DUF4371: Domain of unknown function (DUF4371) | Back alignment and domain information |
|---|
| >PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00614 ZnF_BED BED zinc finger | Back alignment and domain information |
|---|
| >PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [] | Back alignment and domain information |
|---|
| >PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PHA00616 hypothetical protein | Back alignment and domain information |
|---|
| >PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A | Back alignment and domain information |
|---|
| >PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 694 | ||||
| 2bw3_A | 534 | Three-Dimensional Structure Of The Hermes Dna Trans | 5e-04 |
| >pdb|2BW3|A Chain A, Three-Dimensional Structure Of The Hermes Dna Transposase Length = 534 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B Length = 534 | Back alignment and structure |
|---|
Score = 217 bits (553), Expect = 8e-63
Identities = 78/574 (13%), Positives = 183/574 (31%), Gaps = 69/574 (12%)
Query: 129 SFNQDRSTQDIAKMIIVHEYPPHIVEHPAFIDFVHTLQ-----------PQFNVASFNTI 177
+ + + + A+ ++ P V FID + + + S T+
Sbjct: 13 ADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITL 72
Query: 178 QGDCVAIYLREKQRLLNFISGIH--GRVNLALDLWSSNQS-VGYAVLTGHFIDGDWNLHH 234
+ +K + I + +DLW+ N + +T H+ + + L
Sbjct: 73 SRKVTSDAKEKKALIGREIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRD 131
Query: 235 RVLNVVMVPSPDSD-VAFNQALASCLSDWRLENKLLTLTLDRSFSNETINGNLRGFLSVK 293
+L + + S + L + S + +E+ + +N +
Sbjct: 132 LILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLA-------- 183
Query: 294 NPFMLNCQLIKGNCYARVISRLAQDALGAIWETVDKIRASVKYVKTSDTHEEKFLELKER 353
N +NC + + + + + + + VKY K ++
Sbjct: 184 NNIRINC----SSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHRLR------ 233
Query: 354 LQVPSTKELFIDDQTKWNTTYHMLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEIL 413
L + T+WN+TY ML + + E + + + + + ++ +
Sbjct: 234 ------SSLKSECPTRWNSTYTMLRSILDNWESVIQILSEAGETQ--RIVHINKSIIQTM 285
Query: 414 CTYLKYFFDAANILTSPTYPTASVFYHEVSKIQAELTQAAMSEEPFTSYLTKPLKERFDE 473
L F L + + P+ + K++ + + + L + +
Sbjct: 286 VNILDGFERIFKELQTCSSPSLCFVVPSILKVKEIC-SPDVGDVADIAKLKVNIIKNVRI 344
Query: 474 YWKDCFLVLAIAVVIDPRFKMKLIEFSFSRIYGEDAGMWIKAVDDGLHELFHEYLVQMLA 533
W++ + + + + ++I F+E L
Sbjct: 345 IWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSFNELSATQLN 404
Query: 534 LPDTFMDEGLEVIPKSEASREETLHAGNIEEGTPQEHSQDLSLISIGDGLSDFEVYISED 593
D+ +++ S+ S +
Sbjct: 405 QSDSNSHNSIDLTSHSKDI-------------------------STTSFFFPQLTQNNSR 439
Query: 594 TSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDILSIPFSTVPTDS 653
E + Y +E ++ ++DF +++WW LN KYP LS++A +LSIP S+ ++
Sbjct: 440 EPPVCPSDEFEFYRKE-IVILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASER 498
Query: 654 VFDTVSKKIDSYRSSLRPVTLEALICAKDWLQYG 687
F I R+ + T+++L+ + +
Sbjct: 499 TFSLAGNIITEKRNRIGQQTVDSLLFLNSFYKNF 532
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6 Length = 73 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 694 | ||||
| d2bw3a2 | 447 | c.55.3.12 (A:163-609) Transposase Hermes, catalyti | 1e-58 | |
| d2ct5a1 | 60 | g.37.1.6 (A:8-67) Zinc finger BED domain-containin | 0.002 |
| >d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Hermes transposase-like domain: Transposase Hermes, catalytic domain species: House fly (Musca domestica) [TaxId: 7370]
Score = 202 bits (514), Expect = 1e-58
Identities = 73/488 (14%), Positives = 170/488 (34%), Gaps = 60/488 (12%)
Query: 203 VNLALDLWSSNQS-VGYAVLTGHFIDGDWNLHHRVLNVVMVPSPDSD-VAFNQALASCLS 260
+ +DLW+ N + +T H+ + + L +L + + S + L + S
Sbjct: 13 ASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFS 71
Query: 261 DWRLENKLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLIKGNCYARVISRLAQDAL 320
+ +E+ + +N + +L + + NC + ++S + +++
Sbjct: 72 QFNVEDLSSIKFVTDRGAN--VVKSLANNIRI-------------NCSSHLLSNVLENSF 116
Query: 321 GAIWETVDKIRASVKYVKTSDTHEEKFLELKERLQVPSTKELFIDDQTKWNTTYHMLVAA 380
E I A VK F + + ++ L + T+WN+TY ML +
Sbjct: 117 EETPELNMPILACKNIVK-------YFKKANLQHRLR--SSLKSECPTRWNSTYTMLRSI 167
Query: 381 HELKEVFACLETFDPDYKIATPTMDDWKQVEILCTYLKYFFDAANILTSPTYPTASVFYH 440
+ E ++ + + ++ + L F L + + P+
Sbjct: 168 LDNWESV--IQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSPSLCFVVP 225
Query: 441 EVSKIQAELTQAAMSEEPFTSYLTKPLKERFDEYWKDCFLVL--AIAVVIDPRFKMKLIE 498
+ K++ E+ + + + L + + W++ + P M+ +
Sbjct: 226 SILKVK-EICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEK 284
Query: 499 FSFSRIYGEDAGMWIKAVDDGLHELFHEYLVQMLALPDTFMDEGLEVIPKSEASREETLH 558
+ + + ++ ++ F+E L D+
Sbjct: 285 VAQIKEFCLSKMEDLELINR--MSSFNELSATQLNQSDSNSHN----------------- 325
Query: 559 AGNIEEGTPQEHSQDLSLISIGDGLSDFEVYISEDTSGQPMRSELDQYLEEFLLPRTQDF 618
+ + IS + E + Y +E ++ ++DF
Sbjct: 326 --------SIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKE-IVILSEDF 376
Query: 619 DILDWWRLNQAKYPTLSRMASDILSIPFSTVPTDSVFDTVSKKIDSYRSSLRPVTLEALI 678
+++WW LN KYP LS++A +LSIP S+ ++ F I R+ + T+++L+
Sbjct: 377 KVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLL 436
Query: 679 CAKDWLQY 686
+ +
Sbjct: 437 FLNSFYKN 444
|
| >d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 694 | |||
| d2bw3a2 | 447 | Transposase Hermes, catalytic domain {House fly (M | 100.0 | |
| d2ct5a1 | 60 | Zinc finger BED domain-containing protein 1 {Human | 98.35 | |
| d2bw3a1 | 84 | Transposase Hermes, dimerisation domain {House fly | 96.89 |
| >d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Hermes transposase-like domain: Transposase Hermes, catalytic domain species: House fly (Musca domestica) [TaxId: 7370]
Probab=100.00 E-value=0 Score=389.62 Aligned_cols=431 Identities=17% Similarity=0.250 Sum_probs=313.7
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCC-CCCEEEEEEEEEEECCCCEEEEEEEEEEEC-CCCCHHHHHHHHHHHHHHCCCC-C
Q ss_conf 999999961678327732031003-883278999998828854254588854407-9994458999999998732786-6
Q 005485 190 QRLLNFISGIHGRVNLALDLWSSN-QSVGYAVLTGHFIDGDWNLHHRVLNVVMVP-SPDSDVAFNQALASCLSDWRLE-N 266 (694)
Q Consensus 190 ~~i~~~l~~~~~~~sl~~D~wt~~-~~~~~l~v~~~~i~~~~~~~~~~L~~~~~~-~~~t~~~i~~~i~~vl~~~~i~-~ 266 (694)
.+|++.+.. ..+|+++|+||+. ....||+|++||++ ++.+++++|++.++. +.|||++|++.|.+++.+|||+ .
T Consensus 2 ~~~k~~~~~--~~~s~~~D~Wts~~~~~~~l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~ 78 (447)
T d2bw3a2 2 REIKSAVEK--DGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDL 78 (447)
T ss_dssp HHHHHHHHT--TCCEEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHC--CCEEEEEEEECCCCCCEEEEEEEEEEEE-CCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 258999971--7979999710379988379999999987-8835689999998279998399999999999998499863
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCHHH
Q ss_conf 47899605898866799989953123798643672223401589987999988733---128999999876874249179
Q 005485 267 KLLTLTLDRSFSNETINGNLRGFLSVKNPFMLNCQLIKGNCYARVISRLAQDALGA---IWETVDKIRASVKYVKTSDTH 343 (694)
Q Consensus 267 ki~~i~~D~a~~n~~~~~~l~~~l~~~~~~~~~~~~~~i~C~~H~lnl~~~~~l~~---i~~~l~~~~~~~~~~~~s~~~ 343 (694)
+++++++||++||. ..+ ....+++|++|.||+++++++.. +...+.+++.++.+|+.++.+
T Consensus 79 ~~~~~~~D~a~n~~-------~~~---------~~~~~i~C~aH~Lnl~v~d~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 142 (447)
T d2bw3a2 79 SSIKFVTDRGANVV-------KSL---------ANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQ 142 (447)
T ss_dssp TTCEEEECCCHHHH-------HHT---------TTSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCG
T ss_pred EEEEEECCCCHHHH-------HHH---------HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69999748707667-------776---------00443533655522566888862189999999999999998767999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999852989997523578865334999899998668998677521987766899986699999999999999999
Q 005485 344 EEKFLELKERLQVPSTKELFIDDQTKWNTTYHMLVAAHELKEVFACLETFDPDYKIATPTMDDWKQVEILCTYLKYFFDA 423 (694)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~l~~~~~tRW~S~~~~l~~~l~~~~~i~~~~~~~~~~~~~~l~~~~w~~l~~l~~iL~pf~~~ 423 (694)
... ...++.+++|||.|++.|+.++++++..+..+....... ..++..+|..++.+..+|+||..+
T Consensus 143 ~~~------------~~~l~~~~~trW~s~~~~l~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ 208 (447)
T d2bw3a2 143 HRL------------RSSLKSECPTRWNSTYTMLRSILDNWESVIQILSEAGET--QRIVHINKSIIQTMVNILDGFERI 208 (447)
T ss_dssp GGG------------CCCCCCSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTCG--GGTTTCCHHHHHHHHHHHHTTHHH
T ss_pred HHH------------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 987------------301577776623439999999999999999999842533--467717678999999999877888
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHEECCCCHHHHHHHHHH
Q ss_conf 8332499966535379999999999998823989578975899999999976200-003222300067400466887522
Q 005485 424 ANILTSPTYPTASVFYHEVSKIQAELTQAAMSEEPFTSYLTKPLKERFDEYWKDC-FLVLAIAVVIDPRFKMKLIEFSFS 502 (694)
Q Consensus 424 ~~~l~~~~~~~~~~v~~~i~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~A~~LdPr~k~~~~~~~~~ 502 (694)
+..++....++++.++|.+..+...+... .........+...+...++.||.+. ...+.+|.+|||+++......
T Consensus 209 ~~~l~~~~~~t~~~v~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~p~~~~~~~~~--- 284 (447)
T d2bw3a2 209 FKELQTCSSPSLCFVVPSILKVKEICSPD-VGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEK--- 284 (447)
T ss_dssp HHHHTCSSSCCGGGHHHHHHHHHHHTCCC-TTSCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHHTSGGGTTSCCSC---
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHH---
T ss_conf 89873157775999999999999999775-01369999999999999999885011369999986087311101567---
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00254234689999999999999-99630037998654677654666412355431048887899876766532124799
Q 005485 503 RIYGEDAGMWIKAVDDGLHELFH-EYLVQMLALPDTFMDEGLEVIPKSEASREETLHAGNIEEGTPQEHSQDLSLISIGD 581 (694)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (694)
......+. ......+.. ...................... . .. .......
T Consensus 285 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~----~~-------~~~~~~~ 334 (447)
T d2bw3a2 285 ---VAQIKEFC---LSKMEDLELINRMSSFNELSATQLNQSDSNSH-------------N----SI-------DLTSHSK 334 (447)
T ss_dssp ---HHHHHHHH---HHHHHHHHHHHHHHHTTCSCSSSCCC----------------------------------------
T ss_pred ---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------C----CC-------CCCCHHH
T ss_conf ---87899999---99999999998888888776654056644444-------------4----44-------5441332
Q ss_pred CCCHHH----HHH--HCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 972243----321--00147998333999998414989988766789997602773028999997716566552212111
Q 005485 582 GLSDFE----VYI--SEDTSGQPMRSELDQYLEEFLLPRTQDFDILDWWRLNQAKYPTLSRMASDILSIPFSTVPTDSVF 655 (694)
Q Consensus 582 ~~~~~~----~~~--~~~~~~~~~~~El~~y~~~~~~~~~~~~dpl~~W~~~~~~fP~L~~lA~~~LsiPass~~~Er~F 655 (694)
...... ... ...........|++.|+.++.. ...+.+|++||+.++..||.|+++|+++|++|+||+.|||+|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~~yl~~~~~-~~~~~~~l~~W~~~~~~yP~L~~lA~~~Lsip~tsa~~ER~F 413 (447)
T d2bw3a2 335 DISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVI-LSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTF 413 (447)
T ss_dssp CCCHHHHHCHHHHHHHHHSCCCCHHHHHHHHHTCCCC-CCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHH
T ss_pred HHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC-CCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 1110241147765401011111548899998637454-678888899998787124899999999948887044999887
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 348863124324789878999977421012799
Q 005485 656 DTVSKKIDSYRSSLRPVTLEALICAKDWLQYGS 688 (694)
Q Consensus 656 S~~~~~~~~~R~~L~~~~le~l~~l~~~~~~~~ 688 (694)
|.++.+++++|++|+++++++|+||++|+|+.+
T Consensus 414 S~~~~i~t~~R~~L~~e~le~L~~l~~~~k~~~ 446 (447)
T d2bw3a2 414 SLAGNIITEKRNRIGQQTVDSLLFLNSFYKNFC 446 (447)
T ss_dssp HHTHHHHHCTTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 324030576368999899999999999765602
|
| >d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation domain {House fly (Musca domestica) [TaxId: 7370]} | Back information, alignment and structure |
|---|