BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005487
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 329 VMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMIS 382
++ G + KI +NSS + F+ R+ N +FE + +Y ++
Sbjct: 36 ILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLY---LVM 92
Query: 383 GYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE- 441
Y + G+ F L + MKE A+ S + C Q + + + N ++++ +
Sbjct: 93 EYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNI 152
Query: 442 -------TNEIVMGALLDMYAKCGA 459
+NE G LD + CGA
Sbjct: 153 KIADFGFSNEFTFGNKLDAF--CGA 175
>pdb|3LHO|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_751971.1) From
Shewanella Frigidimarina Ncimb 400 At 1.80 A Resolution
Length = 267
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 509 DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAG-RLQEAYG 567
D T+ ALL+ +A WV GY N N P E + L +AG L + G
Sbjct: 139 DKATYQALLAESEYAAWVAALGYRANHFTVSINDLPEFERIEDVNQALKQAGFVLNSSGG 198
Query: 568 ILQSTPEI 575
++ +PE+
Sbjct: 199 EVKGSPEV 206
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 329 VMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMIS 382
++ G + KI +N + + F+ R+ N +FE + +Y +I
Sbjct: 37 ILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLY---LIM 93
Query: 383 GYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE- 441
Y + G+ F L + MKE A+ S + C Q + + + N ++++ +
Sbjct: 94 EYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNI 153
Query: 442 -------TNEIVMGALLDMYAKCGA 459
+NE +G LD + CGA
Sbjct: 154 KIADFGFSNEFTVGGKLDAF--CGA 176
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 329 VMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMIS 382
++ G + KI +NSS + F+ R+ N +FE + +Y ++
Sbjct: 36 ILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLY---LVM 92
Query: 383 GYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE- 441
Y + G+ F L + MKE A+ S + C Q + + + N ++++ +
Sbjct: 93 EYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNI 152
Query: 442 -------TNEIVMGALLDMYAKCGA 459
+NE G LD + CG+
Sbjct: 153 KIADFGFSNEFTFGNKLDTF--CGS 175
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 329 VMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMIS 382
++ G + KI +NSS + F+ R+ N +FE + +Y ++
Sbjct: 36 ILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLY---LVM 92
Query: 383 GYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE- 441
Y + G+ F L + MKE A+ S + C Q + + + N ++++ +
Sbjct: 93 EYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNI 152
Query: 442 -------TNEIVMGALLDMYAKCGA 459
+NE G LD + CG+
Sbjct: 153 KIADFGFSNEFTFGNKLDTF--CGS 175
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
Length = 388
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 471 PERDLVSWTSMIAAYGSHGRALEALKLFGEMQ 502
PE+D+V+ T ++ G G L + +FG Q
Sbjct: 107 PEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQ 138
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 345 INSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYS 398
+NSS + F+ R+ N +FE + +Y ++ Y + G+ F L +
Sbjct: 52 LNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLY---LVMEYASGGEVFDYLVAHG 108
Query: 399 DMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE--------TNEIVMGAL 450
MKE A+ S + C Q + + + N ++++ + +NE G
Sbjct: 109 RMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNK 168
Query: 451 LDMYAKCGA 459
LD + CG+
Sbjct: 169 LDTF--CGS 175
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 329 VMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMIS 382
++ G + KI +NSS + F+ R+ N +FE + +Y ++
Sbjct: 29 ILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLY---LVM 85
Query: 383 GYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE- 441
Y + G+ F L + MKE A+ S + C Q + + + N ++++ +
Sbjct: 86 EYASGGEVFDYLVAHGWMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNI 145
Query: 442 -------TNEIVMGALLDMYAKCGA 459
+NE G LD + CG+
Sbjct: 146 KIADFGFSNEFTFGNKLDTF--CGS 168
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 329 VMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMIS 382
++ G + KI +N + + F+ R+ N +FE + +Y +I
Sbjct: 34 ILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLY---LIM 90
Query: 383 GYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE- 441
Y + G+ F L + MKE A+ S + C Q + + + N ++++ +
Sbjct: 91 EYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNI 150
Query: 442 -------TNEIVMGALLDMYAKCGA 459
+NE +G LD + CG+
Sbjct: 151 KIADFGFSNEFTVGGKLDTF--CGS 173
>pdb|2V8I|A Chain A, Structure Of A Family 2 Pectate Lyase In A Native Form
pdb|2V8K|A Chain A, Structure Of A Family 2 Pectate Lyase In Complex With
Trigalacturonic Acid
Length = 543
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 43 SLINLYFSCQNYDYAMLVFKTIDNPLDLSLWNG-LMASYTKNYMYITALELFDML 96
+L++LY + Q DY L K DN + + +G MAS + Y + A+E + +L
Sbjct: 434 ALLDLYHASQVADYRKLAEKIGDNIIKIRYIDGFFMASSDRQYADVDAIEPYALL 488
>pdb|2V8J|A Chain A, Structure Of A Family 2 Pectate Lyase In Complex With A
Transition Metal
Length = 535
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 43 SLINLYFSCQNYDYAMLVFKTIDNPLDLSLWNG-LMASYTKNYMYITALELFDML 96
+L++LY + Q DY L K DN + + +G MAS + Y + A+E + +L
Sbjct: 433 ALLDLYHASQVADYRKLAEKIGDNIIKIRYIDGFFMASSDRQYADVDAIEPYALL 487
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 345 INSSLIDLYFKCGRVSSAEN------VFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYS 398
+NSS + F+ R+ N +FE + +Y ++ Y + G+ F L +
Sbjct: 52 LNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLY---LVMEYASGGEVFDYLVAHG 108
Query: 399 DMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE--------TNEIVMGAL 450
MKE A+ S + C Q + + + N ++++ + +NE G
Sbjct: 109 RMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNK 168
Query: 451 LDMYAKCGA 459
LD + CG+
Sbjct: 169 LDEF--CGS 175
>pdb|1OJI|A Chain A, Anatomy Of Glycosynthesis: Structure And Kinetics Of The
Humicola Insolens Cel7be197a And E197s Glycosynthase
Mutants
pdb|1OJJ|A Chain A, Anatomy Of Glycosynthesis: Structure And Kinetics Of The
Humicola Insolens Cel7be197a And E197s Glycosynthase
Mutants
pdb|1OJJ|B Chain B, Anatomy Of Glycosynthesis: Structure And Kinetics Of The
Humicola Insolens Cel7be197a And E197s Glycosynthase
Mutants
pdb|1OJK|A Chain A, Anatomy Of Glycosynthesis: Structure And Kinetics Of The
Humicola Insolens Cel7be197a And E197s Glycosynthase
Mutants
pdb|1OJK|B Chain B, Anatomy Of Glycosynthesis: Structure And Kinetics Of The
Humicola Insolens Cel7be197a And E197s Glycosynthase
Mutants
Length = 402
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 26/103 (25%)
Query: 149 GMYAKCNSFECAVKMFDEMSERDVASWNTV---ISCYYQDGQAEKALELFKKMRGSGFQP 205
G+Y C ECA F+ + +++ WN ++ YY RG F+
Sbjct: 219 GLYL-CEGEECA---FEGVCDKNGCGWNNYRVNVTDYYG--------------RGEEFKV 260
Query: 206 NSVTLTTVISSCARLMDLDRGK--EIHKEFIKDGFVSDSYISS 246
N++ TV++ + + RGK +IH+ +++DG V +S+ ++
Sbjct: 261 NTLKPFTVVT---QFLANRRGKLEKIHRFYVQDGKVIESFYTN 300
>pdb|1DYM|A Chain A, Humicola Insolens Endocellulase Cel7b (Eg 1) E197a Mutant
Endoglucanase, Hydrolase, Cellulase, Cellulose
Degradation, Glycoside Hydrolase Family 7, Glycosynthase
Length = 402
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 26/103 (25%)
Query: 149 GMYAKCNSFECAVKMFDEMSERDVASWNTV---ISCYYQDGQAEKALELFKKMRGSGFQP 205
G+Y C ECA F+ + +++ WN ++ YY RG F+
Sbjct: 219 GLYL-CEGEECA---FEGVCDKNGCGWNNYRVNVTDYYG--------------RGEEFKV 260
Query: 206 NSVTLTTVISSCARLMDLDRGK--EIHKEFIKDGFVSDSYISS 246
N++ TV++ + + RGK +IH+ +++DG V +S+ ++
Sbjct: 261 NTLKPFTVVT---QFLANRRGKLEKIHRFYVQDGKVIESFYTN 300
>pdb|1A39|A Chain A, Humicola Insolens Endocellulase Egi S37w, P39w
Double-Mutant
Length = 402
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 26/103 (25%)
Query: 149 GMYAKCNSFECAVKMFDEMSERDVASWNTV---ISCYYQDGQAEKALELFKKMRGSGFQP 205
G+Y C ECA F+ + +++ WN ++ YY RG F+
Sbjct: 219 GLYL-CEGEECA---FEGVCDKNGCGWNNYRVNVTDYYG--------------RGEEFKV 260
Query: 206 NSVTLTTVISSCARLMDLDRGK--EIHKEFIKDGFVSDSYISS 246
N++ TV++ + + RGK +IH+ +++DG V +S+ ++
Sbjct: 261 NTLKPFTVVT---QFLANRRGKLEKIHRFYVQDGKVIESFYTN 300
>pdb|2A39|A Chain A, Humicola Insolens Endocellulase Egi Native Structure
pdb|2A39|B Chain B, Humicola Insolens Endocellulase Egi Native Structure
Length = 398
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 26/103 (25%)
Query: 149 GMYAKCNSFECAVKMFDEMSERDVASWNTV---ISCYYQDGQAEKALELFKKMRGSGFQP 205
G+Y C ECA F+ + +++ WN ++ YY RG F+
Sbjct: 219 GLYL-CEGEECA---FEGVCDKNGCGWNNYRVNVTDYYG--------------RGEEFKV 260
Query: 206 NSVTLTTVISSCARLMDLDRGK--EIHKEFIKDGFVSDSYISS 246
N++ TV++ + + RGK +IH+ +++DG V +S+ ++
Sbjct: 261 NTLKPFTVVT---QFLANRRGKLEKIHRFYVQDGKVIESFYTN 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,122,995
Number of Sequences: 62578
Number of extensions: 811705
Number of successful extensions: 1906
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1877
Number of HSP's gapped (non-prelim): 51
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)