Query 005487
Match_columns 694
No_of_seqs 622 out of 3926
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 00:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.2E-97 7E-102 820.4 80.7 687 3-694 86-774 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-74 6.4E-79 622.0 63.5 524 170-694 85-611 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2E-73 4.3E-78 630.8 67.5 570 72-647 53-624 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.2E-63 2.6E-68 539.5 55.8 471 72-545 89-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.1E-63 4.4E-68 538.0 57.0 542 22-579 354-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.7E-60 7.9E-65 512.7 60.1 505 102-609 366-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-38 4.4E-43 361.8 69.7 655 4-679 228-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.2E-38 1.3E-42 357.9 68.8 624 6-642 128-799 (899)
9 PRK11447 cellulose synthase su 100.0 6.5E-30 1.4E-34 290.4 66.5 619 3-640 28-738 (1157)
10 PRK11447 cellulose synthase su 100.0 7E-28 1.5E-32 273.9 59.7 592 39-644 29-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.1E-25 2.4E-30 243.5 60.4 600 14-644 55-742 (987)
12 PRK09782 bacteriophage N4 rece 100.0 3.8E-25 8.3E-30 239.3 62.7 586 28-644 30-708 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.8E-23 3.8E-28 200.2 36.6 444 175-631 51-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 1.1E-20 2.3E-25 191.1 50.3 614 18-645 109-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 3.1E-23 6.7E-28 198.5 29.8 421 210-643 51-486 (966)
16 KOG2002 TPR-containing nuclear 99.9 2E-19 4.3E-24 182.1 48.5 583 19-611 146-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-20 2.9E-25 201.5 41.1 419 175-642 130-571 (615)
18 KOG2076 RNA polymerase III tra 99.9 6.9E-17 1.5E-21 162.9 51.3 626 3-638 139-891 (895)
19 PRK11788 tetratricopeptide rep 99.9 3.4E-20 7.3E-25 188.7 28.0 301 352-658 44-363 (389)
20 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.5E-23 184.5 40.2 331 275-613 44-386 (656)
21 PRK10049 pgaA outer membrane p 99.9 8.4E-18 1.8E-22 183.2 43.2 406 205-644 13-458 (765)
22 TIGR00990 3a0801s09 mitochondr 99.9 1E-17 2.3E-22 179.3 43.3 425 144-613 130-576 (615)
23 KOG0495 HAT repeat protein [RN 99.9 5.7E-15 1.2E-19 143.4 56.8 609 17-655 265-891 (913)
24 PRK15174 Vi polysaccharide exp 99.9 2.7E-18 5.8E-23 182.8 37.3 328 309-644 43-383 (656)
25 PRK10049 pgaA outer membrane p 99.9 3.4E-17 7.4E-22 178.4 46.5 416 171-616 14-464 (765)
26 PRK11788 tetratricopeptide rep 99.8 4E-18 8.6E-23 173.5 31.0 294 281-607 43-346 (389)
27 KOG2076 RNA polymerase III tra 99.8 1.7E-15 3.7E-20 153.0 48.5 599 39-644 140-851 (895)
28 PRK14574 hmsH outer membrane p 99.8 6.5E-16 1.4E-20 164.6 45.7 439 148-615 41-520 (822)
29 PRK14574 hmsH outer membrane p 99.8 2E-15 4.2E-20 161.1 47.6 460 80-596 44-534 (822)
30 KOG0495 HAT repeat protein [RN 99.8 4.4E-14 9.4E-19 137.4 50.7 547 50-622 327-894 (913)
31 KOG4422 Uncharacterized conser 99.8 1.6E-15 3.5E-20 139.9 36.2 408 14-441 126-593 (625)
32 KOG2003 TPR repeat-containing 99.8 4.5E-16 9.7E-21 144.4 32.6 273 351-628 427-709 (840)
33 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.7E-19 134.0 39.4 447 68-574 114-589 (625)
34 KOG0547 Translocase of outer m 99.7 4.4E-14 9.6E-19 132.8 32.7 214 422-640 339-564 (606)
35 PF13429 TPR_15: Tetratricopep 99.7 5.7E-17 1.2E-21 155.7 9.5 256 380-640 14-275 (280)
36 KOG4318 Bicoid mRNA stability 99.7 5.5E-12 1.2E-16 127.4 43.0 601 21-646 8-812 (1088)
37 KOG1915 Cell cycle control pro 99.7 2.3E-11 5E-16 114.4 42.6 445 140-621 72-548 (677)
38 KOG1915 Cell cycle control pro 99.7 2.9E-12 6.3E-17 120.3 35.7 418 254-684 85-538 (677)
39 KOG2003 TPR repeat-containing 99.7 2.8E-13 6.1E-18 126.1 28.8 415 221-641 215-688 (840)
40 KOG2047 mRNA splicing factor [ 99.6 2.7E-10 5.8E-15 111.4 47.1 198 13-219 78-293 (835)
41 KOG1155 Anaphase-promoting com 99.6 1.4E-11 3.1E-16 115.5 34.7 328 305-641 161-494 (559)
42 KOG1155 Anaphase-promoting com 99.6 5.9E-11 1.3E-15 111.5 38.5 360 239-611 161-539 (559)
43 PRK10747 putative protoheme IX 99.6 9.3E-13 2E-17 132.4 29.2 276 356-641 97-389 (398)
44 KOG1126 DNA-binding cell divis 99.6 9.2E-14 2E-18 136.4 20.9 277 358-644 334-622 (638)
45 KOG1126 DNA-binding cell divis 99.6 2.4E-13 5.2E-18 133.5 23.6 249 389-643 334-587 (638)
46 KOG4318 Bicoid mRNA stability 99.6 1.1E-11 2.4E-16 125.2 35.3 512 93-646 13-598 (1088)
47 KOG1173 Anaphase-promoting com 99.6 5.1E-12 1.1E-16 121.6 30.7 252 383-640 253-516 (611)
48 PRK10747 putative protoheme IX 99.6 1.8E-12 3.8E-17 130.4 29.4 288 286-609 97-391 (398)
49 KOG4162 Predicted calmodulin-b 99.6 8.3E-11 1.8E-15 117.7 39.4 408 237-653 318-793 (799)
50 TIGR00540 hemY_coli hemY prote 99.6 5.7E-12 1.2E-16 127.5 29.9 279 355-640 96-397 (409)
51 COG2956 Predicted N-acetylgluc 99.6 3.6E-12 7.8E-17 114.0 24.2 300 357-663 49-368 (389)
52 TIGR00540 hemY_coli hemY prote 99.6 2E-11 4.2E-16 123.6 32.9 289 284-608 95-399 (409)
53 PF13429 TPR_15: Tetratricopep 99.5 1.4E-14 2.9E-19 139.3 9.2 228 414-644 13-245 (280)
54 KOG3785 Uncharacterized conser 99.5 7.4E-11 1.6E-15 106.8 30.2 409 150-610 66-492 (557)
55 KOG0547 Translocase of outer m 99.5 2.6E-11 5.6E-16 114.6 27.7 220 384-610 336-568 (606)
56 KOG1174 Anaphase-promoting com 99.5 4.5E-10 9.8E-15 104.0 35.0 288 321-614 209-506 (564)
57 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.5E-15 108.0 29.3 289 285-608 96-390 (400)
58 KOG2047 mRNA splicing factor [ 99.5 1.7E-08 3.8E-13 99.1 44.5 538 72-636 104-717 (835)
59 TIGR02521 type_IV_pilW type IV 99.5 1.1E-11 2.3E-16 116.7 22.3 199 443-642 30-232 (234)
60 COG3071 HemY Uncharacterized e 99.5 3E-10 6.4E-15 105.3 29.9 283 185-501 97-387 (400)
61 KOG1173 Anaphase-promoting com 99.4 6E-10 1.3E-14 107.7 31.6 281 278-590 249-533 (611)
62 KOG0985 Vesicle coat protein c 99.4 2.1E-07 4.5E-12 96.2 50.6 145 474-640 1103-1247(1666)
63 KOG1129 TPR repeat-containing 99.4 4.7E-12 1E-16 113.2 15.4 228 378-641 227-457 (478)
64 KOG2376 Signal recognition par 99.4 2E-09 4.4E-14 104.6 32.6 178 457-638 320-516 (652)
65 COG2956 Predicted N-acetylgluc 99.4 2.6E-10 5.6E-15 102.4 24.4 271 285-590 47-326 (389)
66 KOG1129 TPR repeat-containing 99.4 1.2E-11 2.6E-16 110.7 15.2 229 448-686 227-462 (478)
67 KOG1840 Kinesin light chain [C 99.4 1.8E-10 3.9E-15 114.9 24.3 232 409-640 199-477 (508)
68 KOG4162 Predicted calmodulin-b 99.4 9.4E-09 2E-13 103.3 35.9 134 477-614 652-789 (799)
69 COG3063 PilF Tfp pilus assembl 99.4 6.5E-11 1.4E-15 101.2 17.7 163 477-644 37-204 (250)
70 KOG3785 Uncharacterized conser 99.4 2.2E-09 4.9E-14 97.4 27.5 451 45-549 29-497 (557)
71 KOG1156 N-terminal acetyltrans 99.3 8.1E-08 1.8E-12 94.8 39.0 445 184-639 19-508 (700)
72 PRK12370 invasion protein regu 99.3 6E-10 1.3E-14 117.4 26.0 245 389-643 276-536 (553)
73 KOG0985 Vesicle coat protein c 99.3 1.2E-06 2.6E-11 90.7 47.0 248 41-298 484-749 (1666)
74 PRK11189 lipoprotein NlpI; Pro 99.3 2.6E-10 5.6E-15 109.6 20.4 189 447-643 67-266 (296)
75 PRK12370 invasion protein regu 99.3 2.4E-10 5.3E-15 120.3 21.7 214 423-643 275-503 (553)
76 KOG1127 TPR repeat-containing 99.3 8.5E-08 1.9E-12 99.1 38.1 598 7-631 463-1127(1238)
77 TIGR02521 type_IV_pilW type IV 99.3 1.6E-09 3.5E-14 101.7 23.6 162 445-609 66-233 (234)
78 KOG2376 Signal recognition par 99.3 1.3E-07 2.9E-12 92.3 36.0 118 80-202 22-140 (652)
79 PF12569 NARP1: NMDA receptor- 99.3 5.5E-08 1.2E-12 98.8 34.6 46 593-638 471-516 (517)
80 KOG1174 Anaphase-promoting com 99.3 4.6E-08 9.9E-13 91.1 30.7 392 239-644 94-502 (564)
81 KOG3617 WD40 and TPR repeat-co 99.3 5.9E-07 1.3E-11 91.0 40.4 240 37-300 725-994 (1416)
82 KOG1125 TPR repeat-containing 99.3 1.7E-10 3.7E-15 111.9 15.4 220 420-642 296-527 (579)
83 KOG3616 Selective LIM binding 99.2 4.2E-07 9.1E-12 90.9 38.3 259 43-331 562-847 (1636)
84 COG3063 PilF Tfp pilus assembl 99.2 1.9E-09 4.1E-14 92.5 19.0 194 447-641 38-235 (250)
85 KOG1156 N-terminal acetyltrans 99.2 1.7E-07 3.7E-12 92.6 34.8 418 218-644 18-470 (700)
86 PRK11189 lipoprotein NlpI; Pro 99.2 6.4E-09 1.4E-13 100.0 24.6 228 388-623 40-281 (296)
87 KOG3616 Selective LIM binding 99.2 2.9E-07 6.4E-12 91.9 34.8 492 49-638 455-962 (1636)
88 KOG1127 TPR repeat-containing 99.2 2.1E-07 4.5E-12 96.4 34.4 550 67-641 489-1103(1238)
89 KOG0548 Molecular co-chaperone 99.1 2.5E-08 5.4E-13 96.4 24.1 236 379-626 229-473 (539)
90 KOG3617 WD40 and TPR repeat-co 99.1 1.7E-06 3.6E-11 87.8 37.5 422 72-564 728-1189(1416)
91 PF13041 PPR_2: PPR repeat fam 99.1 1.2E-10 2.6E-15 77.5 6.0 50 170-219 1-50 (50)
92 PF12569 NARP1: NMDA receptor- 99.1 2.4E-08 5.1E-13 101.4 24.5 149 493-644 129-293 (517)
93 KOG0624 dsRNA-activated protei 99.1 3.2E-07 7E-12 83.4 28.5 293 310-612 40-374 (504)
94 KOG1840 Kinesin light chain [C 99.1 6.4E-08 1.4E-12 97.0 26.7 202 378-607 245-478 (508)
95 KOG0624 dsRNA-activated protei 99.1 2.5E-07 5.5E-12 84.1 26.6 310 245-580 41-375 (504)
96 PF13041 PPR_2: PPR repeat fam 99.1 4.6E-10 1E-14 74.7 6.8 50 372-421 1-50 (50)
97 PF04733 Coatomer_E: Coatomer 99.1 7.1E-09 1.5E-13 97.9 17.3 251 350-612 8-269 (290)
98 KOG0548 Molecular co-chaperone 99.1 1.5E-07 3.2E-12 91.2 26.0 244 348-604 229-485 (539)
99 KOG4340 Uncharacterized conser 99.0 2.5E-07 5.5E-12 82.4 24.3 393 202-641 5-442 (459)
100 TIGR03302 OM_YfiO outer membra 99.0 2.8E-08 6.1E-13 93.0 19.0 180 443-643 32-233 (235)
101 KOG4340 Uncharacterized conser 99.0 5.7E-07 1.2E-11 80.2 25.4 341 144-502 13-373 (459)
102 PRK15359 type III secretion sy 99.0 1.1E-08 2.5E-13 86.1 14.0 93 549-641 27-120 (144)
103 PF04733 Coatomer_E: Coatomer 99.0 6.5E-08 1.4E-12 91.5 19.8 229 345-583 37-273 (290)
104 PRK10370 formate-dependent nit 98.9 7.9E-08 1.7E-12 85.7 17.6 149 482-644 23-175 (198)
105 cd05804 StaR_like StaR_like; a 98.9 2.8E-06 6.1E-11 85.3 30.3 260 382-643 51-337 (355)
106 KOG1125 TPR repeat-containing 98.9 6.8E-08 1.5E-12 94.3 16.9 246 384-634 295-563 (579)
107 KOG1128 Uncharacterized conser 98.9 3.6E-08 7.9E-13 98.7 15.4 260 406-686 395-659 (777)
108 PRK15363 pathogenicity island 98.9 3.5E-08 7.7E-13 81.0 12.8 97 546-642 35-132 (157)
109 PRK15359 type III secretion sy 98.9 2.5E-08 5.5E-13 84.0 12.5 124 495-625 13-138 (144)
110 cd05804 StaR_like StaR_like; a 98.9 5.8E-06 1.3E-10 83.1 30.5 268 375-644 7-295 (355)
111 COG5010 TadD Flp pilus assembl 98.9 2.6E-07 5.7E-12 81.5 17.2 157 479-638 70-227 (257)
112 KOG1070 rRNA processing protei 98.9 3E-07 6.6E-12 98.4 20.8 202 441-646 1455-1667(1710)
113 PRK15179 Vi polysaccharide bio 98.8 2.4E-07 5.1E-12 98.0 19.8 161 473-644 84-247 (694)
114 KOG1914 mRNA cleavage and poly 98.8 0.0001 2.2E-09 72.0 34.7 150 390-540 347-502 (656)
115 PLN02789 farnesyltranstransfer 98.8 9.7E-07 2.1E-11 84.7 21.5 212 423-639 51-299 (320)
116 PRK04841 transcriptional regul 98.8 5.8E-06 1.3E-10 94.4 31.8 324 320-643 386-761 (903)
117 KOG1128 Uncharacterized conser 98.8 2.4E-07 5.1E-12 93.0 17.0 225 439-685 393-619 (777)
118 PRK04841 transcriptional regul 98.7 3.8E-05 8.3E-10 87.8 35.4 365 246-612 345-764 (903)
119 PRK10370 formate-dependent nit 98.7 1.1E-06 2.3E-11 78.5 17.7 155 451-617 23-182 (198)
120 PLN02789 farnesyltranstransfer 98.7 1.6E-06 3.4E-11 83.3 19.2 189 452-644 45-252 (320)
121 COG5010 TadD Flp pilus assembl 98.7 1.3E-06 2.7E-11 77.3 16.4 135 507-644 63-199 (257)
122 TIGR03302 OM_YfiO outer membra 98.7 1.3E-06 2.8E-11 81.8 16.6 183 407-610 31-234 (235)
123 PRK15179 Vi polysaccharide bio 98.6 6.1E-06 1.3E-10 87.6 23.1 132 439-574 81-216 (694)
124 COG4783 Putative Zn-dependent 98.6 8.4E-06 1.8E-10 78.7 21.5 149 474-644 305-456 (484)
125 KOG2053 Mitochondrial inherita 98.6 0.0011 2.4E-08 69.1 39.4 161 477-640 438-606 (932)
126 TIGR02552 LcrH_SycD type III s 98.6 5.7E-07 1.2E-11 75.7 11.6 103 541-643 11-115 (135)
127 COG4783 Putative Zn-dependent 98.6 2E-05 4.2E-10 76.2 22.9 177 459-641 252-436 (484)
128 KOG3060 Uncharacterized conser 98.6 9.7E-06 2.1E-10 71.1 18.2 170 447-619 55-231 (289)
129 KOG1070 rRNA processing protei 98.6 1.2E-05 2.5E-10 86.8 22.1 233 406-639 1455-1697(1710)
130 KOG3060 Uncharacterized conser 98.6 7.5E-06 1.6E-10 71.8 17.1 163 477-644 54-222 (289)
131 KOG3081 Vesicle coat complex C 98.5 0.0001 2.2E-09 65.4 23.4 251 351-612 16-275 (299)
132 PRK14720 transcript cleavage f 98.4 1.9E-05 4.2E-10 84.6 20.4 218 371-625 28-269 (906)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.2E-06 6.9E-11 82.7 13.2 125 511-640 170-295 (395)
134 PF09976 TPR_21: Tetratricopep 98.4 5.8E-06 1.3E-10 70.1 13.2 115 523-638 24-143 (145)
135 KOG1914 mRNA cleavage and poly 98.4 0.0025 5.4E-08 62.7 34.5 78 204-283 17-96 (656)
136 TIGR02552 LcrH_SycD type III s 98.4 6.7E-06 1.5E-10 69.1 13.3 116 497-616 5-122 (135)
137 KOG0553 TPR repeat-containing 98.4 2.9E-06 6.3E-11 76.6 9.8 103 517-622 88-192 (304)
138 PF09976 TPR_21: Tetratricopep 98.3 3.8E-05 8.2E-10 65.1 16.0 127 477-606 14-145 (145)
139 TIGR02795 tol_pal_ybgF tol-pal 98.3 6E-06 1.3E-10 67.7 10.6 96 548-643 4-106 (119)
140 KOG3081 Vesicle coat complex C 98.3 0.00037 8.1E-09 62.0 21.4 224 349-581 47-277 (299)
141 PF12854 PPR_1: PPR repeat 98.3 8.1E-07 1.8E-11 52.7 3.4 33 33-65 2-34 (34)
142 KOG0553 TPR repeat-containing 98.3 4.7E-06 1E-10 75.3 9.7 123 482-608 88-215 (304)
143 PF12895 Apc3: Anaphase-promot 98.3 3.7E-07 8E-12 69.0 2.2 79 559-638 2-83 (84)
144 PLN03088 SGT1, suppressor of 98.3 1E-05 2.2E-10 79.9 12.8 103 517-622 9-113 (356)
145 cd00189 TPR Tetratricopeptide 98.3 6.6E-06 1.4E-10 64.3 9.5 94 549-642 3-97 (100)
146 PRK14720 transcript cleavage f 98.2 0.001 2.2E-08 71.8 27.2 153 408-590 115-268 (906)
147 PF13414 TPR_11: TPR repeat; P 98.2 2.6E-06 5.6E-11 61.5 5.7 65 578-642 2-67 (69)
148 COG4235 Cytochrome c biogenesi 98.2 7.4E-06 1.6E-10 74.7 9.7 107 543-649 153-263 (287)
149 PF12854 PPR_1: PPR repeat 98.2 2E-06 4.3E-11 51.0 3.9 32 237-268 2-33 (34)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.5E-05 9.7E-10 74.8 15.5 125 446-574 171-296 (395)
151 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.1E-05 4.6E-10 64.4 11.3 105 512-616 4-113 (119)
152 KOG0550 Molecular chaperone (D 98.2 5.1E-05 1.1E-09 71.5 14.6 157 483-643 177-351 (486)
153 PRK15331 chaperone protein Sic 98.2 2.4E-05 5.2E-10 64.8 10.7 101 541-641 31-133 (165)
154 PF13432 TPR_16: Tetratricopep 98.2 4.4E-06 9.5E-11 59.4 5.4 59 585-643 3-61 (65)
155 KOG2053 Mitochondrial inherita 98.1 0.017 3.8E-07 60.7 41.2 218 14-237 20-256 (932)
156 PRK02603 photosystem I assembl 98.1 2.4E-05 5.2E-10 68.7 10.4 94 548-641 37-148 (172)
157 PF07079 DUF1347: Protein of u 98.1 0.012 2.6E-07 56.9 37.8 119 458-582 394-528 (549)
158 PLN03088 SGT1, suppressor of 98.1 4.1E-05 8.9E-10 75.6 12.2 103 480-586 7-110 (356)
159 CHL00033 ycf3 photosystem I as 98.1 3.2E-05 6.9E-10 67.7 10.0 94 546-639 35-139 (168)
160 PF13432 TPR_16: Tetratricopep 98.0 1.3E-05 2.7E-10 57.0 6.0 63 551-613 2-65 (65)
161 PRK10153 DNA-binding transcrip 98.0 0.00019 4.1E-09 74.1 16.2 140 473-614 335-488 (517)
162 COG4700 Uncharacterized protei 98.0 0.00089 1.9E-08 56.0 16.7 151 485-639 66-219 (251)
163 PRK02603 photosystem I assembl 98.0 0.00018 4E-09 63.1 13.8 128 476-628 36-166 (172)
164 COG4700 Uncharacterized protei 97.9 9.5E-05 2.1E-09 61.6 9.8 112 536-647 79-194 (251)
165 COG3898 Uncharacterized membra 97.9 0.022 4.8E-07 54.0 26.1 274 356-643 97-393 (531)
166 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 5E-10 47.4 4.5 35 173-207 1-35 (35)
167 PF13371 TPR_9: Tetratricopept 97.9 4.3E-05 9.3E-10 55.9 6.6 59 586-644 2-60 (73)
168 PRK10866 outer membrane biogen 97.9 0.0016 3.4E-08 60.3 18.3 57 584-640 180-239 (243)
169 KOG1130 Predicted G-alpha GTPa 97.9 5.9E-05 1.3E-09 70.9 8.6 130 511-640 196-342 (639)
170 PF12895 Apc3: Anaphase-promot 97.9 4.8E-05 1E-09 57.3 6.6 80 488-571 2-83 (84)
171 PF13414 TPR_11: TPR repeat; P 97.9 2.8E-05 6.1E-10 56.1 5.2 66 545-610 2-69 (69)
172 PF14559 TPR_19: Tetratricopep 97.9 1.6E-05 3.6E-10 57.1 3.8 54 590-643 2-55 (68)
173 cd00189 TPR Tetratricopeptide 97.8 0.00016 3.5E-09 56.2 9.7 93 515-610 5-99 (100)
174 CHL00033 ycf3 photosystem I as 97.8 0.00033 7.2E-09 61.2 12.2 115 512-629 37-167 (168)
175 PF13431 TPR_17: Tetratricopep 97.8 9.9E-06 2.1E-10 48.0 1.7 34 601-634 1-34 (34)
176 PRK15363 pathogenicity island 97.8 0.00061 1.3E-08 56.5 12.4 90 449-539 40-132 (157)
177 PF13812 PPR_3: Pentatricopept 97.8 4.1E-05 9E-10 45.8 4.2 33 173-205 2-34 (34)
178 PRK10153 DNA-binding transcrip 97.8 0.00074 1.6E-08 69.8 15.6 135 506-644 333-484 (517)
179 PRK10803 tol-pal system protei 97.8 0.00017 3.6E-09 67.2 9.6 92 521-612 154-250 (263)
180 TIGR00756 PPR pentatricopeptid 97.8 5.6E-05 1.2E-09 45.6 4.5 33 376-408 2-34 (35)
181 PF12688 TPR_5: Tetratrico pep 97.7 0.00043 9.4E-09 55.3 10.5 90 551-640 6-102 (120)
182 PF05843 Suf: Suppressor of fo 97.7 0.001 2.2E-08 63.3 14.8 136 476-614 2-142 (280)
183 KOG0543 FKBP-type peptidyl-pro 97.7 0.00019 4.2E-09 68.1 9.5 85 580-690 258-342 (397)
184 PF13812 PPR_3: Pentatricopept 97.7 6.8E-05 1.5E-09 44.9 4.1 33 274-306 2-34 (34)
185 PF04840 Vps16_C: Vps16, C-ter 97.6 0.068 1.5E-06 51.6 29.8 109 446-571 179-287 (319)
186 PF14559 TPR_19: Tetratricopep 97.6 4.3E-05 9.4E-10 54.9 2.9 56 522-580 3-59 (68)
187 PRK10803 tol-pal system protei 97.6 0.00097 2.1E-08 62.2 12.3 91 486-578 154-249 (263)
188 PF07079 DUF1347: Protein of u 97.6 0.086 1.9E-06 51.3 34.7 189 445-639 299-521 (549)
189 COG3898 Uncharacterized membra 97.6 0.011 2.4E-07 55.9 18.2 213 420-640 95-319 (531)
190 KOG0550 Molecular chaperone (D 97.6 0.022 4.7E-07 54.5 20.2 153 420-576 180-351 (486)
191 KOG2041 WD40 repeat protein [G 97.5 0.14 3E-06 52.5 27.3 150 221-398 748-902 (1189)
192 PF13525 YfiO: Outer membrane 97.5 0.0018 3.8E-08 58.5 12.7 50 584-633 146-198 (203)
193 PF13371 TPR_9: Tetratricopept 97.5 0.00022 4.7E-09 52.1 5.7 67 553-619 2-69 (73)
194 PF14938 SNAP: Soluble NSF att 97.5 0.0065 1.4E-07 58.2 17.3 26 478-503 158-183 (282)
195 COG4235 Cytochrome c biogenesi 97.5 0.0028 6.2E-08 58.2 13.8 115 497-614 144-262 (287)
196 PF14938 SNAP: Soluble NSF att 97.5 0.0031 6.8E-08 60.4 15.1 158 478-637 78-261 (282)
197 PF13428 TPR_14: Tetratricopep 97.5 0.00018 4E-09 45.9 3.8 42 580-621 2-43 (44)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00059 1.3E-08 66.6 8.6 65 578-642 74-141 (453)
199 PF10037 MRP-S27: Mitochondria 97.4 0.0016 3.4E-08 64.4 11.7 118 138-255 63-186 (429)
200 PF01535 PPR: PPR repeat; Int 97.4 0.00023 5E-09 41.4 3.6 29 174-202 2-30 (31)
201 PF05843 Suf: Suppressor of fo 97.4 0.0013 2.7E-08 62.7 10.6 132 511-644 2-138 (280)
202 PRK11906 transcriptional regul 97.4 0.0026 5.7E-08 62.4 12.3 146 490-638 273-432 (458)
203 KOG1538 Uncharacterized conser 97.4 0.054 1.2E-06 54.8 21.1 270 36-394 554-824 (1081)
204 PF12688 TPR_5: Tetratrico pep 97.4 0.0074 1.6E-07 48.3 12.7 95 479-573 5-102 (120)
205 KOG1538 Uncharacterized conser 97.4 0.019 4.1E-07 57.9 17.9 267 172-504 556-846 (1081)
206 PF08579 RPM2: Mitochondrial r 97.3 0.0026 5.6E-08 48.8 8.8 79 176-254 29-116 (120)
207 PF13512 TPR_18: Tetratricopep 97.3 0.0064 1.4E-07 49.5 11.4 97 548-644 12-130 (142)
208 PRK10866 outer membrane biogen 97.2 0.14 3.1E-06 47.4 21.7 59 379-439 37-99 (243)
209 PF01535 PPR: PPR repeat; Int 97.2 0.00043 9.4E-09 40.2 3.3 30 275-304 2-31 (31)
210 KOG2796 Uncharacterized conser 97.2 0.0058 1.2E-07 54.4 11.3 133 479-611 181-318 (366)
211 PF13281 DUF4071: Domain of un 97.2 0.03 6.4E-07 54.4 17.0 160 450-612 147-338 (374)
212 PRK11906 transcriptional regul 97.2 0.032 6.9E-07 55.1 17.2 141 459-604 273-432 (458)
213 KOG1258 mRNA processing protei 97.2 0.35 7.6E-06 49.2 33.4 182 443-627 296-489 (577)
214 PF10037 MRP-S27: Mitochondria 97.2 0.01 2.3E-07 58.8 13.9 119 405-523 62-186 (429)
215 PF08579 RPM2: Mitochondrial r 97.1 0.0058 1.3E-07 46.9 9.1 78 278-355 30-116 (120)
216 COG0457 NrfG FOG: TPR repeat [ 97.1 0.24 5.2E-06 46.2 26.4 196 444-643 59-266 (291)
217 KOG2280 Vacuolar assembly/sort 97.1 0.47 1E-05 49.5 29.0 112 443-570 683-794 (829)
218 KOG2796 Uncharacterized conser 97.1 0.078 1.7E-06 47.6 17.1 134 375-510 178-319 (366)
219 PF13424 TPR_12: Tetratricopep 97.0 0.00097 2.1E-08 49.4 4.2 60 581-640 7-73 (78)
220 KOG2114 Vacuolar assembly/sort 97.0 0.63 1.4E-05 49.3 26.4 121 40-168 336-458 (933)
221 KOG0543 FKBP-type peptidyl-pro 97.0 0.0076 1.6E-07 57.7 10.6 97 547-643 258-356 (397)
222 COG0457 NrfG FOG: TPR repeat [ 96.9 0.35 7.5E-06 45.1 25.7 198 409-611 59-268 (291)
223 PF03704 BTAD: Bacterial trans 96.9 0.017 3.6E-07 49.1 11.2 60 581-640 64-123 (146)
224 PF13525 YfiO: Outer membrane 96.8 0.26 5.6E-06 44.5 19.3 60 380-439 11-72 (203)
225 COG1729 Uncharacterized protei 96.8 0.015 3.2E-07 53.0 10.7 86 487-574 153-243 (262)
226 COG1729 Uncharacterized protei 96.8 0.012 2.5E-07 53.6 9.8 105 512-617 144-253 (262)
227 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.6 1.3E-05 45.6 33.1 74 24-99 30-105 (660)
228 PF13512 TPR_18: Tetratricopep 96.8 0.032 6.9E-07 45.6 11.3 120 478-615 13-135 (142)
229 KOG1258 mRNA processing protei 96.8 0.79 1.7E-05 46.8 28.8 126 72-200 47-179 (577)
230 KOG4555 TPR repeat-containing 96.7 0.013 2.8E-07 46.1 8.3 93 552-644 49-146 (175)
231 KOG2041 WD40 repeat protein [G 96.7 0.9 2E-05 47.0 28.8 125 154-296 747-875 (1189)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0085 1.8E-07 58.8 9.0 63 546-608 75-141 (453)
233 COG4105 ComL DNA uptake lipopr 96.7 0.38 8.2E-06 43.7 18.4 59 584-642 172-233 (254)
234 PF13424 TPR_12: Tetratricopep 96.7 0.0044 9.6E-08 45.8 5.4 61 548-608 7-75 (78)
235 PRK15331 chaperone protein Sic 96.6 0.048 1E-06 45.7 11.3 91 480-573 42-132 (165)
236 KOG2280 Vacuolar assembly/sort 96.6 1.3 2.7E-05 46.5 27.0 113 509-638 683-795 (829)
237 PF04840 Vps16_C: Vps16, C-ter 96.6 0.82 1.8E-05 44.2 27.5 105 346-466 180-284 (319)
238 KOG1941 Acetylcholine receptor 96.5 0.024 5.2E-07 53.1 9.8 47 384-430 16-64 (518)
239 PF06239 ECSIT: Evolutionarily 96.5 0.022 4.8E-07 49.8 8.9 88 170-257 45-153 (228)
240 KOG2396 HAT (Half-A-TPR) repea 96.4 1.2 2.5E-05 44.5 27.6 80 87-169 88-168 (568)
241 KOG1130 Predicted G-alpha GTPa 96.4 0.048 1E-06 52.1 11.4 127 376-502 197-342 (639)
242 KOG1585 Protein required for f 96.3 0.35 7.5E-06 43.1 15.4 142 478-636 94-250 (308)
243 PF06239 ECSIT: Evolutionarily 96.3 0.033 7.2E-07 48.7 9.2 90 269-358 43-153 (228)
244 PF04184 ST7: ST7 protein; In 96.3 0.24 5.3E-06 49.2 15.8 105 510-614 259-381 (539)
245 COG3118 Thioredoxin domain-con 96.2 0.2 4.3E-06 46.3 14.0 120 519-642 143-265 (304)
246 PF03704 BTAD: Bacterial trans 96.2 0.059 1.3E-06 45.7 10.5 72 477-549 64-139 (146)
247 PF07719 TPR_2: Tetratricopept 96.2 0.014 3.1E-07 34.5 4.8 33 580-612 2-34 (34)
248 KOG4234 TPR repeat-containing 96.2 0.035 7.6E-07 47.4 8.3 92 553-644 102-199 (271)
249 COG2976 Uncharacterized protei 96.1 0.4 8.6E-06 41.3 14.3 116 493-611 70-191 (207)
250 KOG2610 Uncharacterized conser 96.1 0.17 3.8E-06 47.1 13.0 159 488-649 116-283 (491)
251 COG3118 Thioredoxin domain-con 96.1 0.55 1.2E-05 43.5 16.0 174 462-637 121-296 (304)
252 PF13281 DUF4071: Domain of un 96.0 0.43 9.4E-06 46.6 16.2 168 475-643 141-335 (374)
253 PF00515 TPR_1: Tetratricopept 96.0 0.016 3.4E-07 34.3 4.1 32 580-611 2-33 (34)
254 PF10300 DUF3808: Protein of u 95.9 0.38 8.2E-06 49.7 16.5 116 523-641 246-375 (468)
255 KOG4648 Uncharacterized conser 95.8 0.018 3.9E-07 53.4 5.3 103 515-620 102-206 (536)
256 PF09205 DUF1955: Domain of un 95.7 0.82 1.8E-05 36.5 13.8 141 485-645 12-152 (161)
257 KOG4555 TPR repeat-containing 95.6 0.041 8.8E-07 43.4 5.9 59 586-644 50-108 (175)
258 PF10300 DUF3808: Protein of u 95.6 0.42 9E-06 49.4 15.2 158 449-608 193-376 (468)
259 PF02259 FAT: FAT domain; Int 95.5 1.6 3.5E-05 43.6 19.3 147 473-626 144-305 (352)
260 smart00299 CLH Clathrin heavy 95.4 0.92 2E-05 38.0 14.5 125 479-624 11-136 (140)
261 COG4785 NlpI Lipoprotein NlpI, 95.4 0.93 2E-05 39.7 13.9 29 614-642 238-266 (297)
262 COG5107 RNA14 Pre-mRNA 3'-end 95.3 3.2 7E-05 40.8 33.5 429 55-504 26-531 (660)
263 PRK11619 lytic murein transgly 95.2 5.5 0.00012 43.0 32.6 116 488-606 254-373 (644)
264 KOG4234 TPR repeat-containing 95.2 0.31 6.7E-06 42.0 10.2 124 520-643 105-234 (271)
265 COG4785 NlpI Lipoprotein NlpI, 95.1 0.19 4.1E-06 43.8 9.0 91 520-613 75-167 (297)
266 KOG1941 Acetylcholine receptor 95.1 0.3 6.5E-06 46.1 10.9 220 354-573 17-273 (518)
267 PF04053 Coatomer_WDAD: Coatom 95.0 0.67 1.5E-05 47.1 14.1 154 454-638 271-427 (443)
268 PF12921 ATP13: Mitochondrial 95.0 0.46 1E-05 38.5 10.5 49 506-554 48-96 (126)
269 PF13428 TPR_14: Tetratricopep 94.9 0.041 9E-07 34.9 3.6 37 548-584 3-40 (44)
270 PF09613 HrpB1_HrpK: Bacterial 94.9 0.96 2.1E-05 38.0 12.3 90 518-610 18-108 (160)
271 PRK09687 putative lyase; Provi 94.9 3.6 7.9E-05 39.2 26.1 232 342-586 36-274 (280)
272 COG1747 Uncharacterized N-term 94.7 5.4 0.00012 40.1 20.9 162 406-574 63-233 (711)
273 PF04053 Coatomer_WDAD: Coatom 94.5 2.2 4.7E-05 43.6 16.2 130 417-571 269-398 (443)
274 KOG2062 26S proteasome regulat 94.4 8 0.00017 40.8 29.6 39 78-116 67-105 (929)
275 PF13181 TPR_8: Tetratricopept 94.3 0.092 2E-06 30.9 3.9 31 581-611 3-33 (34)
276 KOG2610 Uncharacterized conser 94.2 0.5 1.1E-05 44.2 9.9 118 521-640 114-236 (491)
277 PF13176 TPR_7: Tetratricopept 94.2 0.084 1.8E-06 31.7 3.5 26 615-640 1-26 (36)
278 PF12921 ATP13: Mitochondrial 94.1 0.68 1.5E-05 37.6 9.6 51 541-591 47-100 (126)
279 COG4649 Uncharacterized protei 93.9 1.5 3.3E-05 36.9 11.2 129 475-607 59-195 (221)
280 TIGR02561 HrpB1_HrpK type III 93.9 0.4 8.7E-06 39.4 7.8 55 590-644 21-75 (153)
281 PRK10941 hypothetical protein; 93.7 0.5 1.1E-05 44.2 9.3 83 582-687 184-266 (269)
282 PRK11619 lytic murein transgly 93.6 13 0.00028 40.3 39.8 247 387-647 254-510 (644)
283 PF04184 ST7: ST7 protein; In 93.6 1.5 3.3E-05 43.9 12.5 150 485-648 178-330 (539)
284 PF09613 HrpB1_HrpK: Bacterial 93.5 0.47 1E-05 39.8 7.8 72 557-628 21-93 (160)
285 smart00299 CLH Clathrin heavy 93.5 3.9 8.4E-05 34.2 14.2 41 112-153 13-53 (140)
286 PF13176 TPR_7: Tetratricopept 93.5 0.14 3.1E-06 30.7 3.7 27 582-608 2-28 (36)
287 KOG3941 Intermediate in Toll s 93.4 0.57 1.2E-05 42.8 8.6 97 161-257 54-173 (406)
288 PF09205 DUF1955: Domain of un 93.3 3.6 7.7E-05 33.1 13.9 135 385-538 13-148 (161)
289 KOG4642 Chaperone-dependent E3 93.3 0.14 3.1E-06 45.3 4.6 80 560-639 24-104 (284)
290 COG4105 ComL DNA uptake lipopr 93.2 6.6 0.00014 36.0 19.8 58 382-439 42-101 (254)
291 PF13431 TPR_17: Tetratricopep 93.1 0.099 2.2E-06 30.8 2.4 32 26-58 2-33 (34)
292 COG3947 Response regulator con 93.0 5.4 0.00012 37.0 14.1 58 583-640 283-340 (361)
293 PF08631 SPO22: Meiosis protei 92.9 8.9 0.00019 36.6 22.8 59 446-504 86-150 (278)
294 KOG2114 Vacuolar assembly/sort 92.7 17 0.00036 39.3 29.3 115 147-269 340-458 (933)
295 PF07719 TPR_2: Tetratricopept 92.7 0.13 2.9E-06 30.2 2.7 30 614-643 2-31 (34)
296 KOG1586 Protein required for f 92.5 7.7 0.00017 34.8 15.2 101 524-624 128-242 (288)
297 KOG3941 Intermediate in Toll s 92.4 0.78 1.7E-05 41.9 8.1 97 58-156 54-173 (406)
298 KOG4648 Uncharacterized conser 92.3 0.34 7.4E-06 45.3 6.0 98 481-583 103-202 (536)
299 TIGR02561 HrpB1_HrpK type III 92.3 3 6.4E-05 34.5 10.5 97 522-640 22-120 (153)
300 PF00515 TPR_1: Tetratricopept 92.1 0.18 3.9E-06 29.7 2.7 30 614-643 2-31 (34)
301 PF13174 TPR_6: Tetratricopept 92.0 0.35 7.5E-06 28.1 3.9 27 585-611 6-32 (33)
302 COG3629 DnrI DNA-binding trans 92.0 2 4.3E-05 40.3 10.5 79 476-555 154-236 (280)
303 KOG0890 Protein kinase of the 91.9 39 0.00084 41.5 33.0 109 510-622 1670-1798(2382)
304 COG2976 Uncharacterized protei 91.8 8.2 0.00018 33.6 13.7 93 481-578 95-191 (207)
305 COG4649 Uncharacterized protei 91.7 7.5 0.00016 33.0 15.6 120 454-574 68-195 (221)
306 PF00637 Clathrin: Region in C 91.7 0.16 3.4E-06 42.9 3.0 85 9-97 13-97 (143)
307 KOG0376 Serine-threonine phosp 91.7 0.19 4E-06 49.7 3.7 99 518-619 12-112 (476)
308 KOG1585 Protein required for f 91.6 5 0.00011 36.2 11.8 170 449-639 36-216 (308)
309 PF02259 FAT: FAT domain; Int 91.5 12 0.00026 37.3 16.9 70 577-646 144-217 (352)
310 PF07721 TPR_4: Tetratricopept 91.4 0.25 5.4E-06 27.0 2.5 24 614-637 2-25 (26)
311 PF06552 TOM20_plant: Plant sp 91.0 0.37 7.9E-06 41.1 4.4 85 526-612 7-113 (186)
312 PF10602 RPN7: 26S proteasome 90.8 4.1 8.9E-05 35.6 10.9 97 477-573 38-140 (177)
313 KOG1308 Hsp70-interacting prot 90.7 0.23 5E-06 46.6 3.2 89 558-646 126-215 (377)
314 PF13174 TPR_6: Tetratricopept 90.7 0.3 6.6E-06 28.3 2.7 30 615-644 2-31 (33)
315 PRK15180 Vi polysaccharide bio 90.7 3.6 7.8E-05 40.8 11.1 124 485-611 299-423 (831)
316 KOG0551 Hsp90 co-chaperone CNS 90.6 1.2 2.5E-05 42.0 7.5 93 547-639 82-179 (390)
317 PF08631 SPO22: Meiosis protei 90.4 17 0.00036 34.8 25.4 98 411-510 86-192 (278)
318 COG3629 DnrI DNA-binding trans 90.3 1.2 2.7E-05 41.5 7.6 58 583-640 157-214 (280)
319 PF07035 Mic1: Colon cancer-as 90.3 11 0.00023 32.4 14.1 56 246-301 93-148 (167)
320 KOG1550 Extracellular protein 90.0 30 0.00065 37.0 23.1 245 386-643 261-539 (552)
321 KOG4507 Uncharacterized conser 90.0 1 2.2E-05 45.7 7.0 103 519-624 616-721 (886)
322 PF13181 TPR_8: Tetratricopept 89.8 0.54 1.2E-05 27.5 3.4 29 614-642 2-30 (34)
323 PF14853 Fis1_TPR_C: Fis1 C-te 89.8 1 2.2E-05 29.8 4.7 36 582-617 4-39 (53)
324 PF11207 DUF2989: Protein of u 89.5 7.6 0.00017 34.2 11.2 78 555-633 116-198 (203)
325 KOG3364 Membrane protein invol 89.3 4.6 0.0001 32.6 8.8 72 543-614 29-106 (149)
326 PF07035 Mic1: Colon cancer-as 89.2 13 0.00029 31.8 15.4 39 228-266 15-53 (167)
327 PF06552 TOM20_plant: Plant sp 89.0 1.1 2.5E-05 38.2 5.7 49 541-589 63-123 (186)
328 PF14561 TPR_20: Tetratricopep 88.9 1.1 2.3E-05 33.9 5.0 45 599-643 8-52 (90)
329 PF04097 Nic96: Nup93/Nic96; 88.8 39 0.00085 36.6 19.5 17 623-639 515-531 (613)
330 COG1747 Uncharacterized N-term 88.7 30 0.00064 35.2 21.7 193 441-640 63-286 (711)
331 smart00028 TPR Tetratricopepti 88.4 1 2.2E-05 25.4 3.9 28 583-610 5-32 (34)
332 PF10602 RPN7: 26S proteasome 88.2 10 0.00022 33.2 11.4 62 376-437 38-101 (177)
333 KOG2396 HAT (Half-A-TPR) repea 88.1 32 0.0007 34.9 34.7 241 392-641 300-558 (568)
334 PF13374 TPR_10: Tetratricopep 87.8 0.87 1.9E-05 28.1 3.5 27 615-641 4-30 (42)
335 KOG0276 Vesicle coat complex C 87.5 4.5 9.8E-05 41.5 9.6 101 151-268 647-747 (794)
336 COG2909 MalT ATP-dependent tra 87.2 51 0.0011 36.2 26.3 217 419-638 425-684 (894)
337 PF13170 DUF4003: Protein of u 87.2 8.8 0.00019 36.8 11.2 61 189-249 160-224 (297)
338 KOG1550 Extracellular protein 86.6 49 0.0011 35.4 20.1 245 390-643 228-505 (552)
339 TIGR03504 FimV_Cterm FimV C-te 86.6 1.4 3.1E-05 27.7 3.7 27 617-643 3-29 (44)
340 KOG4570 Uncharacterized conser 86.2 7 0.00015 36.7 9.4 99 439-538 59-163 (418)
341 KOG1920 IkappaB kinase complex 86.0 69 0.0015 36.5 26.4 116 447-573 911-1026(1265)
342 KOG0545 Aryl-hydrocarbon recep 85.7 4.9 0.00011 36.2 7.9 59 585-643 236-294 (329)
343 KOG0890 Protein kinase of the 85.7 1E+02 0.0022 38.2 29.4 63 579-643 1670-1732(2382)
344 PRK09687 putative lyase; Provi 85.6 34 0.00074 32.6 27.4 73 442-520 204-277 (280)
345 PF04910 Tcf25: Transcriptiona 85.2 15 0.00033 36.5 12.1 56 482-537 110-166 (360)
346 KOG0276 Vesicle coat complex C 85.1 14 0.00031 38.1 11.6 149 456-638 598-746 (794)
347 COG4455 ImpE Protein of avirul 85.0 4.1 8.9E-05 36.0 6.9 64 550-613 5-69 (273)
348 KOG2066 Vacuolar assembly/sort 84.3 65 0.0014 34.8 25.6 74 513-599 637-710 (846)
349 COG2909 MalT ATP-dependent tra 84.3 71 0.0015 35.2 26.0 183 385-571 469-684 (894)
350 KOG2063 Vacuolar assembly/sort 84.3 19 0.0004 40.0 13.0 28 376-403 506-533 (877)
351 COG4455 ImpE Protein of avirul 83.8 32 0.00069 30.8 12.8 126 478-614 4-140 (273)
352 PF07721 TPR_4: Tetratricopept 83.8 2.1 4.4E-05 23.3 3.2 21 550-570 5-25 (26)
353 KOG4570 Uncharacterized conser 83.6 8.7 0.00019 36.1 8.7 102 33-136 59-165 (418)
354 PF10345 Cohesin_load: Cohesin 83.6 72 0.0016 34.7 39.4 48 592-639 547-603 (608)
355 PF00637 Clathrin: Region in C 83.6 1.3 2.8E-05 37.2 3.5 84 112-198 13-96 (143)
356 PF09986 DUF2225: Uncharacteri 83.6 5.4 0.00012 36.1 7.5 65 580-644 119-196 (214)
357 PF11207 DUF2989: Protein of u 82.9 33 0.00071 30.4 11.6 66 125-191 125-197 (203)
358 smart00386 HAT HAT (Half-A-TPR 82.6 2.2 4.7E-05 24.4 3.3 30 593-622 1-30 (33)
359 KOG4507 Uncharacterized conser 82.5 6.2 0.00013 40.4 8.0 135 508-644 569-707 (886)
360 KOG2063 Vacuolar assembly/sort 82.4 61 0.0013 36.2 15.9 112 40-152 506-637 (877)
361 PF14853 Fis1_TPR_C: Fis1 C-te 82.0 5 0.00011 26.6 5.0 30 615-644 3-32 (53)
362 PRK15180 Vi polysaccharide bio 81.9 12 0.00027 37.2 9.6 132 454-588 299-434 (831)
363 PF13374 TPR_10: Tetratricopep 81.8 3.6 7.8E-05 25.2 4.3 29 580-608 3-31 (42)
364 PF02284 COX5A: Cytochrome c o 81.8 16 0.00034 28.0 7.9 49 493-541 28-76 (108)
365 KOG3364 Membrane protein invol 81.7 6.2 0.00013 32.0 6.2 72 507-580 29-105 (149)
366 KOG1464 COP9 signalosome, subu 81.5 44 0.00096 30.8 16.4 188 386-573 39-259 (440)
367 KOG1920 IkappaB kinase complex 81.1 1.1E+02 0.0024 35.1 25.8 52 256-318 894-945 (1265)
368 KOG1586 Protein required for f 81.1 43 0.00092 30.4 20.1 26 482-507 161-186 (288)
369 smart00028 TPR Tetratricopepti 80.6 2.8 6E-05 23.4 3.3 29 614-642 2-30 (34)
370 COG2912 Uncharacterized conser 80.4 14 0.0003 34.3 8.9 61 583-643 185-245 (269)
371 KOG1464 COP9 signalosome, subu 80.4 48 0.0011 30.6 19.0 203 357-560 41-286 (440)
372 KOG2471 TPR repeat-containing 80.0 73 0.0016 32.4 14.6 110 519-628 249-384 (696)
373 cd00923 Cyt_c_Oxidase_Va Cytoc 79.8 19 0.00042 27.3 7.7 47 493-539 25-71 (103)
374 PRK10941 hypothetical protein; 79.7 9.8 0.00021 35.8 8.0 68 550-617 185-253 (269)
375 KOG3824 Huntingtin interacting 79.6 3.4 7.3E-05 38.4 4.7 58 558-615 128-186 (472)
376 COG4976 Predicted methyltransf 79.5 3.3 7.1E-05 36.9 4.4 54 591-644 7-60 (287)
377 COG4976 Predicted methyltransf 79.2 3.7 8.1E-05 36.5 4.7 54 558-611 7-61 (287)
378 TIGR02508 type_III_yscG type I 78.2 25 0.00053 26.9 7.9 86 121-210 20-105 (115)
379 PF10579 Rapsyn_N: Rapsyn N-te 77.3 6.1 0.00013 28.5 4.4 46 522-567 18-64 (80)
380 KOG4642 Chaperone-dependent E3 76.5 24 0.00053 31.9 8.8 81 454-536 20-104 (284)
381 COG4941 Predicted RNA polymera 76.3 46 0.001 31.9 11.0 122 490-615 271-401 (415)
382 COG0790 FOG: TPR repeat, SEL1 76.3 75 0.0016 30.5 19.4 49 593-644 205-268 (292)
383 PF10579 Rapsyn_N: Rapsyn N-te 76.2 4.9 0.00011 29.0 3.7 45 591-635 18-65 (80)
384 PF12862 Apc5: Anaphase-promot 76.1 10 0.00022 29.0 6.0 53 589-641 8-69 (94)
385 TIGR02508 type_III_yscG type I 75.5 34 0.00074 26.2 9.6 62 451-515 46-107 (115)
386 COG5159 RPN6 26S proteasome re 75.3 72 0.0016 29.8 12.2 157 380-536 9-191 (421)
387 KOG0376 Serine-threonine phosp 75.2 4.1 8.8E-05 40.7 4.3 120 482-610 11-132 (476)
388 PF09670 Cas_Cas02710: CRISPR- 74.6 60 0.0013 32.7 12.5 53 484-537 140-196 (379)
389 PF04190 DUF410: Protein of un 73.6 82 0.0018 29.7 16.6 159 456-642 2-170 (260)
390 PRK12798 chemotaxis protein; R 73.1 1.1E+02 0.0023 30.8 25.4 177 457-639 125-321 (421)
391 KOG3807 Predicted membrane pro 73.1 51 0.0011 31.4 10.4 55 480-536 280-337 (556)
392 cd00280 TRFH Telomeric Repeat 72.6 18 0.0004 31.2 6.9 36 586-622 118-153 (200)
393 PF02284 COX5A: Cytochrome c o 72.2 31 0.00067 26.5 7.2 60 392-452 28-87 (108)
394 TIGR03504 FimV_Cterm FimV C-te 71.9 9.3 0.0002 24.1 3.9 25 481-505 5-29 (44)
395 PF04910 Tcf25: Transcriptiona 71.2 1.2E+02 0.0025 30.4 13.7 64 578-641 99-167 (360)
396 PF07720 TPR_3: Tetratricopept 70.5 18 0.00038 21.6 4.7 29 582-610 4-34 (36)
397 PHA02875 ankyrin repeat protei 70.0 1.3E+02 0.0029 30.7 14.6 136 25-167 17-158 (413)
398 PRK13800 putative oxidoreducta 69.8 2.2E+02 0.0047 32.9 24.9 124 205-335 754-879 (897)
399 KOG4279 Serine/threonine prote 69.2 1.4E+02 0.003 32.3 13.4 50 552-612 350-399 (1226)
400 PF14561 TPR_20: Tetratricopep 68.6 38 0.00081 25.6 7.3 53 578-630 21-75 (90)
401 KOG1498 26S proteasome regulat 67.5 1.3E+02 0.0029 29.7 14.2 216 422-665 25-264 (439)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 65.8 30 0.00066 28.2 6.8 42 597-638 81-124 (126)
403 PF04097 Nic96: Nup93/Nic96; 64.9 2.1E+02 0.0046 31.1 22.7 50 171-221 110-159 (613)
404 KOG3824 Huntingtin interacting 63.6 17 0.00037 34.0 5.4 77 589-677 126-202 (472)
405 KOG2422 Uncharacterized conser 63.3 2E+02 0.0043 30.2 14.3 54 114-167 350-404 (665)
406 COG5191 Uncharacterized conser 62.1 13 0.00028 35.0 4.3 77 546-622 107-185 (435)
407 cd00923 Cyt_c_Oxidase_Va Cytoc 61.8 70 0.0015 24.4 8.9 48 389-436 22-69 (103)
408 KOG2581 26S proteasome regulat 61.2 1.8E+02 0.0039 29.0 12.4 23 550-572 213-235 (493)
409 PF13762 MNE1: Mitochondrial s 61.0 98 0.0021 25.9 10.4 78 144-221 42-129 (145)
410 PF11846 DUF3366: Domain of un 60.7 31 0.00068 30.7 6.7 36 542-577 140-175 (193)
411 KOG2297 Predicted translation 60.4 46 0.001 31.4 7.5 185 6-227 135-341 (412)
412 PF10366 Vps39_1: Vacuolar sor 60.3 79 0.0017 24.9 8.0 27 72-98 41-67 (108)
413 PF04190 DUF410: Protein of un 59.9 1.6E+02 0.0034 27.8 18.6 140 384-539 20-170 (260)
414 cd08819 CARD_MDA5_2 Caspase ac 59.6 60 0.0013 24.2 6.5 65 226-292 21-85 (88)
415 PF14863 Alkyl_sulf_dimr: Alky 59.6 35 0.00076 28.4 6.2 63 563-629 58-120 (141)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 59.3 96 0.0021 25.3 9.4 43 493-535 81-124 (126)
417 KOG2582 COP9 signalosome, subu 59.2 1.8E+02 0.004 28.5 13.4 17 152-168 194-210 (422)
418 KOG0991 Replication factor C, 58.9 1.4E+02 0.0031 27.2 11.9 41 468-509 232-272 (333)
419 PF07163 Pex26: Pex26 protein; 58.5 1.4E+02 0.003 28.2 10.0 89 482-573 90-185 (309)
420 cd08819 CARD_MDA5_2 Caspase ac 58.3 64 0.0014 24.1 6.5 65 126-192 22-86 (88)
421 KOG2062 26S proteasome regulat 58.2 2.8E+02 0.0061 30.2 31.3 118 453-574 510-634 (929)
422 KOG3783 Uncharacterized conser 56.8 2.5E+02 0.0054 29.3 22.0 68 576-643 444-521 (546)
423 PF10345 Cohesin_load: Cohesin 56.5 3E+02 0.0065 30.0 33.0 50 521-570 372-428 (608)
424 PF13170 DUF4003: Protein of u 55.9 2E+02 0.0043 27.8 18.3 146 492-639 79-243 (297)
425 smart00777 Mad3_BUB1_I Mad3/BU 55.7 76 0.0017 25.8 7.3 69 563-637 50-123 (125)
426 PF07163 Pex26: Pex26 protein; 55.6 1.1E+02 0.0024 28.7 9.0 87 179-265 90-181 (309)
427 PF13929 mRNA_stabil: mRNA sta 55.5 1.9E+02 0.0041 27.5 14.8 54 341-394 200-258 (292)
428 KOG0545 Aryl-hydrocarbon recep 55.5 1.7E+02 0.0037 26.9 10.4 71 548-618 232-303 (329)
429 PF09477 Type_III_YscG: Bacter 55.4 99 0.0021 24.1 8.9 82 118-202 18-99 (116)
430 COG3947 Response regulator con 54.8 1.9E+02 0.0042 27.4 15.0 58 548-605 281-339 (361)
431 KOG2908 26S proteasome regulat 54.8 1.6E+02 0.0035 28.6 10.1 53 519-571 84-140 (380)
432 KOG1308 Hsp70-interacting prot 54.5 11 0.00025 35.9 2.8 48 489-537 128-175 (377)
433 PF12069 DUF3549: Protein of u 54.5 2.2E+02 0.0047 27.9 13.4 87 44-134 172-258 (340)
434 PF13929 mRNA_stabil: mRNA sta 54.3 2E+02 0.0043 27.4 15.6 56 441-496 199-259 (292)
435 PF11846 DUF3366: Domain of un 54.2 26 0.00056 31.3 5.1 47 564-610 129-175 (193)
436 KOG2066 Vacuolar assembly/sort 54.1 3.3E+02 0.0072 29.9 27.3 170 77-273 363-536 (846)
437 COG5159 RPN6 26S proteasome re 54.0 2E+02 0.0042 27.2 19.1 31 281-311 11-41 (421)
438 KOG0686 COP9 signalosome, subu 53.8 2.1E+02 0.0046 28.6 10.9 171 143-316 152-352 (466)
439 PRK12798 chemotaxis protein; R 53.7 2.5E+02 0.0054 28.3 19.3 184 455-643 92-287 (421)
440 COG5191 Uncharacterized conser 53.1 20 0.00043 33.8 4.0 73 575-651 103-176 (435)
441 COG4259 Uncharacterized protei 51.9 72 0.0016 24.3 5.9 55 527-582 54-108 (121)
442 PF08424 NRDE-2: NRDE-2, neces 51.8 2.4E+02 0.0053 27.6 14.0 78 563-640 48-129 (321)
443 KOG0991 Replication factor C, 50.9 2E+02 0.0043 26.3 10.3 165 29-206 81-272 (333)
444 PF11848 DUF3368: Domain of un 50.1 60 0.0013 20.9 4.8 33 183-215 13-45 (48)
445 KOG4567 GTPase-activating prot 49.9 1.9E+02 0.0041 27.7 9.6 78 293-375 263-350 (370)
446 PF09477 Type_III_YscG: Bacter 49.6 1.2E+02 0.0027 23.6 9.2 78 425-505 22-99 (116)
447 COG0790 FOG: TPR repeat, SEL1 48.0 2.6E+02 0.0056 26.8 19.7 146 459-610 92-268 (292)
448 KOG4077 Cytochrome c oxidase, 48.0 1.2E+02 0.0026 24.5 6.9 44 496-539 70-113 (149)
449 PF08424 NRDE-2: NRDE-2, neces 47.8 2.8E+02 0.0061 27.2 17.2 144 491-646 47-213 (321)
450 PRK13800 putative oxidoreducta 47.6 5E+02 0.011 30.0 28.2 254 263-538 625-880 (897)
451 KOG2758 Translation initiation 47.5 2.7E+02 0.0058 26.8 10.4 188 490-683 15-237 (432)
452 PHA02875 ankyrin repeat protei 47.1 3.3E+02 0.0072 27.8 16.4 146 150-308 74-230 (413)
453 KOG0292 Vesicle coat complex C 47.1 56 0.0012 35.8 6.6 28 546-573 672-699 (1202)
454 PF12862 Apc5: Anaphase-promot 47.1 1.2E+02 0.0025 23.1 7.0 20 518-537 49-68 (94)
455 KOG2581 26S proteasome regulat 46.5 1.6E+02 0.0034 29.4 8.9 95 549-643 172-277 (493)
456 PRK13342 recombination factor 46.4 3.4E+02 0.0074 27.8 14.9 43 377-419 230-275 (413)
457 PF10516 SHNi-TPR: SHNi-TPR; 46.1 44 0.00095 20.3 3.5 27 614-640 2-28 (38)
458 PRK13342 recombination factor 45.7 3.5E+02 0.0076 27.7 14.9 47 276-322 230-279 (413)
459 PF09986 DUF2225: Uncharacteri 45.5 1.7E+02 0.0036 26.7 8.7 62 548-609 120-195 (214)
460 KOG2471 TPR repeat-containing 45.3 3.7E+02 0.0079 27.8 12.4 63 584-649 211-273 (696)
461 PF10366 Vps39_1: Vacuolar sor 44.8 1.4E+02 0.003 23.5 7.1 28 173-200 40-67 (108)
462 PHA02537 M terminase endonucle 44.4 1.4E+02 0.003 27.4 7.9 23 485-507 93-115 (230)
463 PF14432 DYW_deaminase: DYW fa 43.9 25 0.00053 28.2 2.9 27 649-679 2-28 (116)
464 cd00280 TRFH Telomeric Repeat 43.8 1.4E+02 0.0031 26.1 7.3 21 553-573 118-138 (200)
465 KOG2300 Uncharacterized conser 43.8 3.8E+02 0.0083 27.6 31.3 437 178-638 13-552 (629)
466 COG4941 Predicted RNA polymera 43.3 2.5E+02 0.0055 27.3 9.5 117 461-580 273-399 (415)
467 KOG1463 26S proteasome regulat 42.1 3.4E+02 0.0074 26.5 17.7 162 449-610 133-318 (411)
468 PF02184 HAT: HAT (Half-A-TPR) 41.8 59 0.0013 18.9 3.3 26 594-620 2-27 (32)
469 PF14689 SPOB_a: Sensor_kinase 41.7 70 0.0015 22.1 4.5 26 512-537 25-50 (62)
470 KOG4279 Serine/threonine prote 41.5 5.1E+02 0.011 28.4 13.6 112 446-560 203-334 (1226)
471 KOG4814 Uncharacterized conser 41.4 1.3E+02 0.0027 32.0 7.8 88 520-609 364-458 (872)
472 KOG4077 Cytochrome c oxidase, 41.3 1.6E+02 0.0035 23.8 6.7 45 192-236 69-113 (149)
473 PRK13184 pknD serine/threonine 41.0 6.2E+02 0.013 29.2 26.5 98 76-200 481-580 (932)
474 COG0735 Fur Fe2+/Zn2+ uptake r 40.9 1.6E+02 0.0035 24.7 7.4 38 280-317 27-64 (145)
475 PF11817 Foie-gras_1: Foie gra 40.8 1.6E+02 0.0035 27.5 8.3 23 550-572 182-204 (247)
476 PF11817 Foie-gras_1: Foie gra 40.6 96 0.0021 29.0 6.7 22 516-537 184-205 (247)
477 PRK11639 zinc uptake transcrip 39.3 1.4E+02 0.003 25.9 7.0 48 277-324 29-76 (169)
478 KOG4567 GTPase-activating prot 39.1 3.6E+02 0.0078 25.9 9.9 81 394-479 263-353 (370)
479 PF14669 Asp_Glu_race_2: Putat 39.0 2.8E+02 0.006 24.6 13.9 23 376-398 183-205 (233)
480 KOG2034 Vacuolar sorting prote 38.7 6.1E+02 0.013 28.5 28.2 133 211-358 508-643 (911)
481 PF11768 DUF3312: Protein of u 38.1 5E+02 0.011 27.4 11.5 23 449-471 413-435 (545)
482 COG0735 Fur Fe2+/Zn2+ uptake r 38.0 1.3E+02 0.0028 25.3 6.4 64 55-120 6-69 (145)
483 KOG0551 Hsp90 co-chaperone CNS 37.9 3.9E+02 0.0085 26.0 10.7 90 481-573 87-180 (390)
484 PF04781 DUF627: Protein of un 37.3 2.1E+02 0.0045 22.7 8.4 22 483-504 4-25 (111)
485 PF12968 DUF3856: Domain of Un 37.2 2.2E+02 0.0048 22.9 9.6 22 618-639 105-126 (144)
486 PF11848 DUF3368: Domain of un 36.9 1.2E+02 0.0025 19.6 4.8 33 284-316 13-45 (48)
487 KOG2908 26S proteasome regulat 36.5 2.6E+02 0.0057 27.2 8.5 63 456-518 87-164 (380)
488 PF14689 SPOB_a: Sensor_kinase 36.2 45 0.00097 23.0 2.8 26 478-503 26-51 (62)
489 PF10255 Paf67: RNA polymerase 35.6 2.4E+02 0.0052 28.5 8.8 56 448-503 126-192 (404)
490 PRK11639 zinc uptake transcrip 35.6 1.6E+02 0.0034 25.6 6.8 64 57-122 13-76 (169)
491 PF11663 Toxin_YhaV: Toxin wit 35.5 45 0.00098 27.2 3.1 31 386-418 107-137 (140)
492 PF11663 Toxin_YhaV: Toxin wit 35.5 52 0.0011 26.8 3.4 31 83-116 108-138 (140)
493 PRK10564 maltose regulon perip 35.1 66 0.0014 30.6 4.6 39 275-313 259-297 (303)
494 PRK10564 maltose regulon perip 33.7 84 0.0018 29.9 5.0 40 375-414 258-297 (303)
495 COG4259 Uncharacterized protei 33.7 1.4E+02 0.003 22.9 5.1 40 599-638 57-97 (121)
496 cd02679 MIT_spastin MIT: domai 32.5 45 0.00098 24.4 2.4 41 592-641 21-67 (79)
497 PF13762 MNE1: Mitochondrial s 32.1 3.1E+02 0.0066 23.1 9.8 53 272-324 78-131 (145)
498 KOG0530 Protein farnesyltransf 32.1 4.4E+02 0.0095 24.8 15.6 91 561-651 93-185 (318)
499 PF07575 Nucleopor_Nup85: Nup8 31.8 6.9E+02 0.015 27.0 17.2 22 489-510 509-530 (566)
500 COG2912 Uncharacterized conser 31.6 1.2E+02 0.0026 28.5 5.5 64 552-615 187-251 (269)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-97 Score=820.40 Aligned_cols=687 Identities=34% Similarity=0.658 Sum_probs=671.8
Q ss_pred hhhHHHHHHHhhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCCCCchhhHHHHHHHHHc
Q 005487 3 ITRILTLLRTCTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDNPLDLSLWNGLMASYTK 82 (694)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (694)
...+..++++|...+....+..++..+++.|..+++.+++.++..|++.|+++.|.++|++|+.|+.. +|+.||.+|.+
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~-~~n~li~~~~~ 164 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF-SWNVLVGGYAK 164 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCee-EHHHHHHHHHh
Confidence 44567778888888888888888888888888888889999999999999999999999999999988 99999999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHH
Q 005487 83 NYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVK 162 (694)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 162 (694)
.|++++|+++|+.|... |+.||..||+.++++|...+++..+.+++..+.+.|+.||..+++.++.+|++.|++++|.+
T Consensus 165 ~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 165 AGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred CCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 005487 163 MFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDS 242 (694)
Q Consensus 163 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (694)
+|++|+.+|..+||.+|.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 005487 243 YISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSG 322 (694)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 322 (694)
.+|+.|+.+|++.|++++|.++|++|..+|..+|++++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005487 323 QLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKE 402 (694)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 402 (694)
+++.+.++++.+.+.|+.++..++++++.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|..
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHH
Q 005487 403 VGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMI 482 (694)
Q Consensus 403 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 482 (694)
++.||..||..++.+|++.|+.+.+.+++..+.+.|+.++..++++++.+|+++|++++|.++|+.+ .+|..+|+.++
T Consensus 484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI 561 (857)
T PLN03077 484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILL 561 (857)
T ss_pred -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCH
Q 005487 483 AAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRL 562 (694)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 562 (694)
.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+++++.|+..+|..++++|.+.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999997889999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 563 QEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 563 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
++|.+++++|+ ..|+..+|..++.+|..+|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|++.
T Consensus 642 ~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 642 TEAYNFINKMP-ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHhhh--ccCCCC
Q 005487 643 GLRKNPGCSWIEIGDRIQPFFAEDKFYPQADMVYECLAILAGHMEK--DELLPS 694 (694)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 694 (694)
|++|+||.||+++++.+|.|+++|..||...++|+.|.++..+|++ |.|+|+
T Consensus 721 g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 721 GLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred CCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999999999999999999999999999999999 999974
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-74 Score=622.03 Aligned_cols=524 Identities=31% Similarity=0.603 Sum_probs=514.9
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 005487 170 RDVASWNTVISCYYQDGQAEKALELFKKMRGSG-FQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSAL 248 (694)
Q Consensus 170 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (694)
++..+|+.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhH
Q 005487 249 VDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGK 328 (694)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 328 (694)
+.+|++.|+++.|.++|++|..+|..+|++++.+|++.|++++|.++|++|.+.|+.|+..||..++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005487 329 VMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPD 408 (694)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 408 (694)
+++..+.+.|+.+|..++++++.+|++.|++++|.++|+.|.++|+.+||.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 005487 409 AVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSH 488 (694)
Q Consensus 409 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (694)
..||+.++.+|++.|+++.|.+++..+.+.|++|+..+++.++.+|+++|++++|.++|+.|.++|..+|+.|+.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHH
Q 005487 489 GRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGI 568 (694)
Q Consensus 489 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 568 (694)
|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+++++.|+..+|+.++++|.+.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997789999999999999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCC
Q 005487 569 LQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNP 648 (694)
Q Consensus 569 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 648 (694)
+++++ ..|+..+|..++.+|..+|+++.|+.+++++++..|++...|..|+.+|.+.|+|++|.++++.|.+.|+++.|
T Consensus 485 ~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 485 IRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99998 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHhhh--ccCCCC
Q 005487 649 GCSWIEIGDRIQPFFAEDKFYPQADMVYECLAILAGHMEK--DELLPS 694 (694)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 694 (694)
|.||+++++.++.|+++|..||...++|+.|.++..+|++ |.|+|+
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999 999974
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-73 Score=630.84 Aligned_cols=570 Identities=30% Similarity=0.504 Sum_probs=555.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhh
Q 005487 72 LWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMY 151 (694)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (694)
+++.++.++++.|++++|+.+|+.|.+. |++|+..+|..++.+|.+.+.++.+.+++..+.+.+..++...++.++.+|
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 8999999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 005487 152 AKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHK 231 (694)
Q Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 231 (694)
++.|+++.|.++|++|++||..+||.+|.+|.+.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH
Q 005487 232 EFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTI 311 (694)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 311 (694)
.+.+.|+.|+..+++.|+.+|++.|+++.|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005487 312 SSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYF 391 (694)
Q Consensus 312 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 391 (694)
+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|..+|..+|+.++.+|.+.|+++
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 005487 392 KALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELP 471 (694)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (694)
+|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 005487 472 ERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSC 551 (694)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 551 (694)
++|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|..++.+|.+.|.++.+.+++..+. +.|+.++..+++.
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~na 529 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNA 529 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechH
Confidence 99999999999999999999999999999986 589999999999999999999999999999998 5599999999999
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCccHHHHHHHHhhcCChH
Q 005487 552 LIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKD-PDDSSTYIVLSNMYASVKKWD 630 (694)
Q Consensus 552 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~ 630 (694)
|++.|.+.|++++|+++|+.+ .||..+|+.++.+|.++|+.++|.++|+++.+.+ .+|..+|..++.+|.+.|+++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 999999999999999999998 7899999999999999999999999999999865 347888999999999999999
Q ss_pred HHHHHHHHHH-hCCCccC
Q 005487 631 EVRKIRLKMK-ELGLRKN 647 (694)
Q Consensus 631 ~A~~~~~~~~-~~~~~~~ 647 (694)
+|.++|+.|. +.|+.++
T Consensus 607 ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 9999999998 5676554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-63 Score=539.52 Aligned_cols=471 Identities=28% Similarity=0.471 Sum_probs=457.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhh
Q 005487 72 LWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMY 151 (694)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (694)
+|+.++.++.+.|++++|+++|+.|...++..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 89999999999999999999999999875688999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 005487 152 AKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHK 231 (694)
Q Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 231 (694)
++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|..+.+.+++.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH
Q 005487 232 EFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTI 311 (694)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 311 (694)
.+.+.|+.+|..+++.|+.+|++.|++++|.++|++|..+|+.+||+++.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005487 312 SSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYF 391 (694)
Q Consensus 312 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 391 (694)
+.++.+|++.|.++.|.+++..|.+.|+.++..++++++.+|+++|++++|.++|++|.++|..+||.+|.+|++.|+.+
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 005487 392 KALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIE-SKLETNEIVMGALLDMYAKCGAVDEAFKVFNEL 470 (694)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (694)
+|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999976 699999999999999999999999999999999
Q ss_pred CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 005487 471 PE-RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARP-DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR 545 (694)
Q Consensus 471 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 545 (694)
.. |+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|++++|.++++.|.+ .|+.+.
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k~ 562 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSMH 562 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCccC
Confidence 76 99999999999999999999999999999864 55 467999999999999999999999999984 476543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-63 Score=537.95 Aligned_cols=542 Identities=15% Similarity=0.203 Sum_probs=467.9
Q ss_pred HhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCCCCc----hhhHHHHHHHHHccCChhHHHHHHHHhh
Q 005487 22 GKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDNPLD----LSLWNGLMASYTKNYMYITALELFDMLL 97 (694)
Q Consensus 22 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 97 (694)
...+-.........++...|..++..+++.|++++|.++|+.|+.++. ...++.++.+|.+.|..+.|+.+|+.|.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 354 ENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 333333344445566777888888888899999999999998876432 2245667788888899999999988885
Q ss_pred hCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCC----CCcc
Q 005487 98 QNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSE----RDVA 173 (694)
Q Consensus 98 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 173 (694)
. ||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..
T Consensus 434 ~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 434 N-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred C-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 2 788899999999999999999999999999999999999999999999999999999999998873 7888
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCchhHHHHHHHh
Q 005487 174 SWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIK--DGFVSDSYISSALVDM 251 (694)
Q Consensus 174 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 251 (694)
+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.+++++|.+ .|+.||..+|+.++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 5788999999999999
Q ss_pred hHhcCChHHHHHHHhcCCC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhh
Q 005487 252 YGKCGCLEMAREVFEQTVL----KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHG 327 (694)
Q Consensus 252 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 327 (694)
|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999988854 567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005487 328 KVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMS----KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEV 403 (694)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 403 (694)
.++++.|.+.|+.|+..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999995 689999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHH
Q 005487 404 GAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIA 483 (694)
Q Consensus 404 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 483 (694)
|+.||..||+.++.+|++.|+++.|.+++.+|.+.|+.|+..+|+.++.++. +.+++|..+.+.+..-+. ..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------g~ 820 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS------GR 820 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------cc
Confidence 9999999999999999999999999999999999999999999999987654 245555554433322110 01
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHH
Q 005487 484 AYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQ 563 (694)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 563 (694)
.....+..+.|..+|++|++.|+.||..+|..++.++...+....+..+++.|. ..+..|+..+|+.+++.+.+. .+
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~ 897 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DP 897 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hH
Confidence 111123346799999999999999999999999988888899999988888886 336778888999999988432 47
Q ss_pred HHHHHHHhCCC--CCCCH
Q 005487 564 EAYGILQSTPE--IREDA 579 (694)
Q Consensus 564 ~A~~~~~~~~~--~~p~~ 579 (694)
+|..++++|.+ +.|+.
T Consensus 898 ~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 898 RAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHHHHHHcCCCCCc
Confidence 89999999876 44443
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-60 Score=512.72 Aligned_cols=505 Identities=18% Similarity=0.255 Sum_probs=440.1
Q ss_pred CCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcC-CCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHH
Q 005487 102 LKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGF-LLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVIS 180 (694)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 180 (694)
..++...|..++..+.+.|+++.|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456677888888899999999999999999999885 4677778888999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHH
Q 005487 181 CYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEM 260 (694)
Q Consensus 181 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 260 (694)
+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----CCChhHHHHHHHHHHcCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHhhccCChhhhHHHHHHH
Q 005487 261 AREVFEQTV----LKSVVAWNALIAGYSSRGDSKSCVKLFWRMNE--EGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYI 334 (694)
Q Consensus 261 A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 334 (694)
|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++.|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998874 47889999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 005487 335 IRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMS----KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAV 410 (694)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 410 (694)
.+.++.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999987 4788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CChHHHHHHHHHHH
Q 005487 411 TFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE----RDLVSWTSMIAAYG 486 (694)
Q Consensus 411 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 486 (694)
+|+.++.+|++.|+++.|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998864 89999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----c-------------------CCHHHHHHHHHHhHHhcCCC
Q 005487 487 SHGRALEALKLFGEMQQSNARPDSITFLALLSACSH----A-------------------GWVDEGGYYFNLMISEYNIQ 543 (694)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~ 543 (694)
+.|+++.|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|. +.|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~-~~Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI-SAGTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH-HCCCC
Confidence 999999999999999999999999999998865432 1 12356777777777 34777
Q ss_pred CChHHHHHHHHHhhhcCCHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005487 544 PRNEHYSCLIDLLGRAGRLQEAYGILQSTPE--IREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKD 609 (694)
Q Consensus 544 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 609 (694)
|+..+|..++.++...+..+.+..+++.+.. ..|+..+|+.++.++.. ..++|..+++.+.+.+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLG 910 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcC
Confidence 7777777777666677777777777766542 44556667777766522 1356777777777655
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-38 Score=361.82 Aligned_cols=655 Identities=14% Similarity=0.084 Sum_probs=444.9
Q ss_pred hhHHHHHHHhhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCC--CCchhhHHHHHHHHH
Q 005487 4 TRILTLLRTCTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDN--PLDLSLWNGLMASYT 81 (694)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~ 81 (694)
..+..+...+...|++++|...++.+.+.. +.+..........+...|++++|...|+++.. |+...++..+...+.
T Consensus 228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 306 (899)
T TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEY 306 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 445666677778888888888888888776 34444555555566777888888888877632 333334555666777
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHH
Q 005487 82 KNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAV 161 (694)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 161 (694)
..|++++|...|+.+.+. .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|.
T Consensus 307 ~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 307 QLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788888888888887765 34455566667777777888888888887777654 445667777777788888888888
Q ss_pred HHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 005487 162 KMFDEMSE---RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGF 238 (694)
Q Consensus 162 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 238 (694)
+.|+++.+ .+...+..+...+...|++++|.+.++.+.+.+. ........++..+.+.|+++.|..+++.+... .
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 461 (899)
T TIGR02917 384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-Q 461 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-C
Confidence 88877654 2344566677777777888888888877766431 12334455666677777777777777777665 3
Q ss_pred CCchhHHHHHHHhhHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005487 239 VSDSYISSALVDMYGKCGCLEMAREVFEQTVL---KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVL 315 (694)
Q Consensus 239 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 315 (694)
+++..++..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.+.+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 55666777777777777777777777776532 345566667777777777777777777777653 33556667777
Q ss_pred HHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHH
Q 005487 316 MSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSK---TDVVYWNVMISGYVTVGDYFK 392 (694)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 392 (694)
..+...|+.++|...+..+.+.+. .+...+..++..|...|++++|..+++.+.+ .+...|..+..++...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777766542 3455566677777777777777777776652 345667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 005487 393 ALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE 472 (694)
Q Consensus 393 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (694)
|...|+++.+.. +.+...+..+..++...|+++.|..+++.+.+.. +.+...+..++..+...|++++|..+++.+..
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777776653 3345566667777777777777777777776654 44566667777777777777777777777665
Q ss_pred ---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 005487 473 ---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHY 549 (694)
Q Consensus 473 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 549 (694)
.+...+..++..+...|++++|...++++... .|+..++..++.++...|++++|...++.+.+. .+.+...+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~ 773 (899)
T TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLR 773 (899)
T ss_pred hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 34556666777777777777777777777765 344456666677777777777777777777632 23345566
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCC
Q 005487 550 SCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKK 628 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 628 (694)
..++..|...|++++|...|+++.+..| ++..+..++..+...|+ .+|+..++++++..|+++..+..++.++...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 7777777777777777777777666444 35566677777777777 667777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHH
Q 005487 629 WDEVRKIRLKMKELGLRKNPGCSWIEIGDRIQPFFAEDKFYPQADMVYECL 679 (694)
Q Consensus 629 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (694)
+++|.+.++++.+.++. ++.... .+...+...+.+.++.++++.+
T Consensus 853 ~~~A~~~~~~a~~~~~~-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPE-AAAIRY-----HLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHHhhCCC-ChHHHH-----HHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777765543 222110 0112233334566666666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.2e-38 Score=357.89 Aligned_cols=624 Identities=12% Similarity=0.041 Sum_probs=313.8
Q ss_pred HHHHHHHhhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCC--CCCchhhHHHHHHHHHcc
Q 005487 6 ILTLLRTCTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTID--NPLDLSLWNGLMASYTKN 83 (694)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~ 83 (694)
+..+...+...|++..|...|+.+++.. +.+..++..++..+...|++++|..+++++. .|+....|..+...+...
T Consensus 128 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (899)
T TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL 206 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Confidence 3344444555666666666666666554 3444555566666666666666666665542 233333555555555666
Q ss_pred CChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHH
Q 005487 84 YMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKM 163 (694)
Q Consensus 84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 163 (694)
|++++|.+.|+.+... .+.+..++..++..+...|+++.|...++.+.+... .+...+......+...|++++|...
T Consensus 207 g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (899)
T TIGR02917 207 GNIELALAAYRKAIAL--RPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARET 283 (899)
T ss_pred CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666666665544 233444455555555555555555555555554321 1112222222223333444444444
Q ss_pred hccCCC-------------------------------------CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005487 164 FDEMSE-------------------------------------RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPN 206 (694)
Q Consensus 164 ~~~~~~-------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 206 (694)
|+++.+ .+...+..+...+...|++++|...++.+.+.+ +.+
T Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 362 (899)
T TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDD 362 (899)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 433322 122233344444445555555555555544332 223
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHH
Q 005487 207 SVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLK---SVVAWNALIAGY 283 (694)
Q Consensus 207 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 283 (694)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++..... .......++..+
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 3444445555555555555555555554432 223344444444455555555555554443221 122333344444
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005487 284 SSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAE 363 (694)
Q Consensus 284 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 363 (694)
.+.|++++|..+++.+... .+++..++..+...+...|+++.|...+..+.+... .+...+..+...+...|++++|.
T Consensus 442 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555555555443 233444555555555666666666666655554432 23334444555555556666665
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCC
Q 005487 364 NVFEKMSK---TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKL 440 (694)
Q Consensus 364 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 440 (694)
..|+.+.. .+..++..+...+.+.|++++|...++++...+ +.+...+..+...+...|+++.|..+++.+.+..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 55555432 233445555555555555555555555554432 2233444445555555555555555555554432
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 005487 441 ETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALL 517 (694)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 517 (694)
+.+...+..++.++...|++++|...|+.+.. .++..+..++..+...|++++|...++++.+.. +.+...+..++
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 33445555555555555555555555555433 233445555555555555555555555555432 22344555555
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005487 518 SACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEM 597 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 597 (694)
..+...|++++|..+++.+... .+++...+..++..+...|++++|.+.++++....|+...+..++..+...|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH
Confidence 5555555555555555555422 12233444555555555555555555555555444444445555555555555555
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 598 GEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 598 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.5e-30 Score=290.41 Aligned_cols=619 Identities=11% Similarity=0.042 Sum_probs=473.9
Q ss_pred hhhHHHHHHHhhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCC--CCchhhH-------
Q 005487 3 ITRILTLLRTCTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDN--PLDLSLW------- 73 (694)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~------- 73 (694)
.+.+....+-|...++.+.|...+++++... |.++.++..++.++.+.|+.++|.+.++++.. |+....+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 3568888999999999999999999999987 67899999999999999999999999999843 5544222
Q ss_pred ---------HHHHHHHHccCChhHHHHHHHHhhhCCCCCCCccc-HHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhH
Q 005487 74 ---------NGLMASYTKNYMYITALELFDMLLQNPYLKPDSYT-YPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVI 143 (694)
Q Consensus 74 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 143 (694)
..++..+...|++++|++.|+.+.+. .+|+... ...........|+.++|...++.+.+.. +.+...
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHH
Confidence 22344678999999999999999875 3444322 1112222335689999999999999985 556778
Q ss_pred HHHHHHhhhcCCChHHHHHHhccCCCCCcc------cH-----------------HHHHHHHHhCCChhHHHHHHHHHHh
Q 005487 144 ASSTAGMYAKCNSFECAVKMFDEMSERDVA------SW-----------------NTVISCYYQDGQAEKALELFKKMRG 200 (694)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~ 200 (694)
+..+..++...|+.++|+..++++...... .| ...+..+-.......|...+..+..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 888999999999999999999987542111 11 1111111111223445555555443
Q ss_pred CCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCCh-----hH
Q 005487 201 SGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSV-----VA 275 (694)
Q Consensus 201 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~ 275 (694)
....|+... ......+...|++++|...+++.++.. +.+..++..+..++.+.|++++|+..|++....++ ..
T Consensus 264 ~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 264 QLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred hccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 321222211 233456677899999999999999874 55788899999999999999999999988654221 11
Q ss_pred HH------------HHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCch
Q 005487 276 WN------------ALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDV 343 (694)
Q Consensus 276 ~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 343 (694)
|. .....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+.... +.
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~ 419 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NT 419 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 21 22346778999999999999999873 345566777888999999999999999999987533 45
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 005487 344 FINSSLIDLYFKCGRVSSAENVFEKMSKTD------------VVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVT 411 (694)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 411 (694)
..+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|+..|++..+.. +-+...
T Consensus 420 ~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~ 497 (1157)
T PRK11447 420 NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWL 497 (1157)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 55666777764 467899999998876321 1234556778889999999999999998863 234566
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----Ch---------HHH
Q 005487 412 FTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPER----DL---------VSW 478 (694)
Q Consensus 412 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~ 478 (694)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...++.++|+..++.+... +. ..+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 7788889999999999999999998754 345555556666778899999999999988651 11 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhh
Q 005487 479 TSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLG 557 (694)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 557 (694)
..+...+...|++++|..+++. .+++...+..+...+.+.|++++|+..|+.+.+ ..|+ ...+..++.+|.
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~ 648 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDI 648 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 3456778899999999999872 245667778888899999999999999999984 3454 678889999999
Q ss_pred hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------cHHHHHHHHhhcCChH
Q 005487 558 RAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS------TYIVLSNMYASVKKWD 630 (694)
Q Consensus 558 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 630 (694)
..|++++|++.++.+.+..|+ ...+..++.++...|++++|.+.++++++..|+++. .+..++.++...|+++
T Consensus 649 ~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 999999999999998877665 556777888899999999999999999998876554 5667799999999999
Q ss_pred HHHHHHHHHH
Q 005487 631 EVRKIRLKMK 640 (694)
Q Consensus 631 ~A~~~~~~~~ 640 (694)
+|++.+++..
T Consensus 729 ~A~~~y~~Al 738 (1157)
T PRK11447 729 QALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7e-28 Score=273.91 Aligned_cols=592 Identities=13% Similarity=0.042 Sum_probs=444.8
Q ss_pred hhhhHHHHHHhcCCChhHHHHHHhhC--CCCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccH-------
Q 005487 39 ALCKSLINLYFSCQNYDYAMLVFKTI--DNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTY------- 109 (694)
Q Consensus 39 ~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 109 (694)
..+...++.+...++.+.|.+.++++ ..|+.+..+..++..+.+.|+.++|.+.++++.+. .|+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHH
Confidence 34667788999999999999999997 45777778999999999999999999999999987 3443222
Q ss_pred ----------HHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhH-HHHHHHhhhcCCChHHHHHHhccCCC--C-CcccH
Q 005487 110 ----------PSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVI-ASSTAGMYAKCNSFECAVKMFDEMSE--R-DVASW 175 (694)
Q Consensus 110 ----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 175 (694)
....+.+.+.|++++|...++.+.+.+ +++... ...+.......|+.++|++.++++.. | +...+
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~ 184 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLR 184 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHH
Confidence 233456788999999999999998764 333321 21222223356999999999999876 3 44577
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCC----------------CChh---hHHHHHHHHhccCChhHHHHHHHHHHHh
Q 005487 176 NTVISCYYQDGQAEKALELFKKMRGSGFQ----------------PNSV---TLTTVISSCARLMDLDRGKEIHKEFIKD 236 (694)
Q Consensus 176 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 236 (694)
..+...+...|+.++|+..++++.+.... ++.. .+...+..+-.......+...+......
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 88889999999999999999998653210 0000 0111111111222234455555554443
Q ss_pred CCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHH-
Q 005487 237 GFVSDSYISSALVDMYGKCGCLEMAREVFEQTVL---KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPT-LTTI- 311 (694)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~- 311 (694)
...|... .......+...|++++|+..|++... .+...+..+...+.+.|++++|...|++..+...... ...+
T Consensus 265 ~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 265 LADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred ccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 2233222 22446677889999999999988643 3677889999999999999999999999987643221 1111
Q ss_pred -----------HHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHH
Q 005487 312 -----------SSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSK---TDVVYW 377 (694)
Q Consensus 312 -----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 377 (694)
......+.+.|++++|...++.+.+..+ .+...+..+..++...|++++|++.|+++.+ .+...+
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 1223456789999999999999998864 3566777889999999999999999998874 344566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 005487 378 NVMISGYVTVGDYFKALAIYSDMKEVGAK--------PDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGA 449 (694)
Q Consensus 378 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (694)
..+...+. .++.++|...++.+...... .....+..+...+...|++++|.+.++++++.. +.+...+..
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 66666664 46789999888765432100 011234456677888999999999999998876 446777888
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh---------hHHHHH
Q 005487 450 LLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSI---------TFLALL 517 (694)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---------~~~~l~ 517 (694)
+..+|.+.|++++|...++.+.. .++..+..+...+...+++++|+..++++......++.. .+..+.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998765 345566666667788999999999998876442222221 233456
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHH
Q 005487 518 SACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIE 596 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 596 (694)
..+...|+.++|..+++. .++++..+..++..+.+.|++++|+..|+++.+..|+ ...+..++..+...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 678899999999999872 2345667788999999999999999999999887775 678899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 597 MGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 597 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
+|++.++++++..|+++..+..++.++...|++++|.++++++.....
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 999999999999999999999999999999999999999999887553
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.1e-25 Score=243.50 Aligned_cols=600 Identities=12% Similarity=0.046 Sum_probs=373.8
Q ss_pred hCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCC--CCchhhHHHHHHHHHccCChhHHHH
Q 005487 14 TGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDN--PLDLSLWNGLMASYTKNYMYITALE 91 (694)
Q Consensus 14 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 91 (694)
...|++.+|...|+.+++.. |.++.++..|..+|.+.|++++|+..+++... |+.. .|..++..+ +++++|.+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~-~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDA-RLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH-HHHHHHHHh---ccChhHHH
Confidence 33478888888888888887 44578888888888888888888888887643 4444 333333222 77788888
Q ss_pred HHHHhhhCCCCCCCcccHHHHHHH--------hhCCCCchhHHHHHHHHHHHcCCCchhHHHHH-HHhhhcCCChHHHHH
Q 005487 92 LFDMLLQNPYLKPDSYTYPSVLKA--------CGGLGSVGIGKMIHTHLIKTGFLLDVVIASST-AGMYAKCNSFECAVK 162 (694)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 162 (694)
.++++... .|-+..++..+... |.+. ++|.+.++ .......|+..+.... ..+|.+.|++++|++
T Consensus 130 ~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 88888876 34444455444444 3333 55555555 3333333344444444 777888888888888
Q ss_pred HhccCCCC---CcccHHHHHHHHHh-CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 005487 163 MFDEMSER---DVASWNTVISCYYQ-DGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGF 238 (694)
Q Consensus 163 ~~~~~~~~---~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 238 (694)
++.++.+. +......|...|.. .++ +++..++.. .++-+...+..+...+.+.|+.+.|.++++++...-.
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 88877652 22234555556666 355 666666442 2335666777777788888888888877776553311
Q ss_pred C-CchhHH------------------------------HHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHH--HHc
Q 005487 239 V-SDSYIS------------------------------SALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAG--YSS 285 (694)
Q Consensus 239 ~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~ 285 (694)
. |...++ ..++..+.+.++++.+.++.. ....+. . ..++. ...
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~ 354 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVA 354 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccc
Confidence 1 111111 112444555555555554422 222222 1 12221 122
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHh-c-CCCchhHHHHHHHHHHhcCC---HH
Q 005487 286 RGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRN-K-IQGDVFINSSLIDLYFKCGR---VS 360 (694)
Q Consensus 286 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~ 360 (694)
.+...++.+.++.|.+. .+-+......+.......|+.++|..++...... + -..+....+.++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 35555555556555554 1224444444444556777788888888777653 1 12344455567777777665 33
Q ss_pred HHHHHHh-------------------------cCC---CC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 005487 361 SAENVFE-------------------------KMS---KT--DVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAV 410 (694)
Q Consensus 361 ~A~~~~~-------------------------~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 410 (694)
++..+-. ... .+ +...|..+..++.. ++.++|+..+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 3333311 111 12 44556666666665 6777788877766654 35554
Q ss_pred HHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChH---HHHHHHHHHHh
Q 005487 411 TFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLV---SWTSMIAAYGS 487 (694)
Q Consensus 411 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~ 487 (694)
....+...+...|+++.|...++.+... +|....+..+..++.+.|++++|...++.....++. .+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 4444445556778888888888776443 333444556667777788888888888777663222 22223333444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHH
Q 005487 488 HGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAY 566 (694)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 566 (694)
.|++++|...+++..+. .|+...+..+..++.+.|++++|+..++++. ...|+ ...+..++.++...|++++|+
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 58888888888888775 4667777777778888888888888888877 34555 456677777888888888888
Q ss_pred HHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 567 GILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 567 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
..++++.+..|+ ...+..++.++...|++++|+..++++++++|++..+....+++..+..+++.|.+.+++.....+
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 888887776664 567777888888888888888888888888888888888888888888888888877776654444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.8e-25 Score=239.34 Aligned_cols=586 Identities=12% Similarity=0.048 Sum_probs=417.8
Q ss_pred HHHHhCCCCCc--hhhhHHHHHH--hcCCChhHHHHHHhhCC--CCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCC
Q 005487 28 KVVTLGLQNNI--ALCKSLINLY--FSCQNYDYAMLVFKTID--NPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPY 101 (694)
Q Consensus 28 ~~~~~~~~~~~--~~~~~l~~~~--~~~g~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 101 (694)
...+.+++|=. .++..+..++ ...|++++|+..|++.. .|+...++..|+..|...|++++|+..+++..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l-- 107 (987)
T PRK09782 30 SAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR-- 107 (987)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 33444444322 2333344333 44599999999999974 4777778999999999999999999999999976
Q ss_pred CCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHh--------hhcCCChHHHHHHhccCCCCC--
Q 005487 102 LKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGM--------YAKCNSFECAVKMFDEMSERD-- 171 (694)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~-- 171 (694)
.|+...|..++..+ ++.+.|..+++++++.. +.+..++..+... |.+.++..++++ .+...++
T Consensus 108 -dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~ 180 (987)
T PRK09782 108 -HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPE 180 (987)
T ss_pred -CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCC
Confidence 44544444444333 88999999999999975 3445556555555 777766666666 3333343
Q ss_pred cccHHHH-HHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 005487 172 VASWNTV-ISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCAR-LMDLDRGKEIHKEFIKDGFVSDSYISSALV 249 (694)
Q Consensus 172 ~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 249 (694)
+.+.... ...|.+.|++++|++++.++.+.+ +.+..-...+-.++.. .++ +.+..+++. .+..++.....++
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 4444444 889999999999999999999975 3344445566667766 356 777766442 3346888899999
Q ss_pred HhhHhcCChHHHHHHHhcCCCC-----ChhHH------------------------------HHHHHHHHcCCCchHHHH
Q 005487 250 DMYGKCGCLEMAREVFEQTVLK-----SVVAW------------------------------NALIAGYSSRGDSKSCVK 294 (694)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~------------------------------~~li~~~~~~~~~~~a~~ 294 (694)
..|...|+.++|..+++++... +..+| -.++..+.+.++++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999887432 11111 112444556666664443
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhh--ccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 005487 295 LFWRMNEEGIKPTLTTISSVLMSCS--RSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSK- 371 (694)
Q Consensus 295 ~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 371 (694)
+. .+.|..... .++... ..+...++...+..+.+.... +....--+.-...+.|+.++|..+|+....
T Consensus 335 ~~------~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~ 405 (987)
T PRK09782 335 LL------ATLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPF 405 (987)
T ss_pred Hh------cCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCC
Confidence 31 234444432 333222 335666666666666665322 344444445556788999999999998764
Q ss_pred -C----ChhHHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHH
Q 005487 372 -T----DVVYWNVMISGYVTVGD---YFKALAI----------------------YSDMKEV-GA-KP--DAVTFTSVLP 417 (694)
Q Consensus 372 -~----~~~~~~~l~~~~~~~~~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~~~~~ll~ 417 (694)
+ +....+-++..|.+.+. ..++..+ +...... +. ++ +...+..+..
T Consensus 406 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~ 485 (987)
T PRK09782 406 QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAK 485 (987)
T ss_pred CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 1 22234466677776655 3333322 2222111 12 23 4556666666
Q ss_pred HHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHH
Q 005487 418 ACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDLVSWTSMIAAYGSHGRALEAL 495 (694)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 495 (694)
++.. ++..+|...+....... |+......+...+...|++++|...|+.+.. ++...+..+..++...|++++|.
T Consensus 486 ~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 486 CYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred HHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHH
Confidence 6665 78888999888887654 4444444556666799999999999998765 55566778888999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 005487 496 KLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEI 575 (694)
Q Consensus 496 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 575 (694)
..+++..+.+ +++...+..+...+...|++++|...+++.. .+.|+...+..++.++.+.|++++|...++++.+.
T Consensus 563 ~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 563 RWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999864 2333444444455667799999999999998 55788889999999999999999999999999988
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 576 RED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 576 ~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
.|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..+++..+..+
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 886 567788888999999999999999999999999999999999999999999999999999886554
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-23 Score=200.17 Aligned_cols=444 Identities=17% Similarity=0.170 Sum_probs=360.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHh
Q 005487 175 WNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGK 254 (694)
Q Consensus 175 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (694)
...|..-..+.|++++|.+.-...-+.+ ..+....-.+-..+.+..+.+.....-....+. .+.-..+|+.+.+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4456666778899999988766554432 222223333334455556666555444444443 25556789999999999
Q ss_pred cCChHHHHHHHhcCCCC---ChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH-HHhhccCChhhhHHH
Q 005487 255 CGCLEMAREVFEQTVLK---SVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVL-MSCSRSGQLKHGKVM 330 (694)
Q Consensus 255 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~ 330 (694)
.|++++|+..++.+.+. .+..|..+..++...|+.+.|.+.|....+. .|+.....+-+ ...-..|.+++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999887543 4578999999999999999999999888775 56655443333 333457889999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005487 331 HGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDV---VYWNVMISGYVTVGDYFKALAIYSDMKEVGAKP 407 (694)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 407 (694)
+.+.++.... =...|+.|.-.+...|+...|+.-|++..+-|+ ..|-.|...|...+.+++|+..|.+.... .|
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 8888776532 244677888889999999999999999876443 57888999999999999999999887765 55
Q ss_pred C-HHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHH
Q 005487 408 D-AVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIA 483 (694)
Q Consensus 408 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 483 (694)
+ ...+..+...|...|..+.|+..|++.++.. +.-+..|+.+..++-..|++.+|.+.|++... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 4566677777889999999999999998865 34567899999999999999999999999887 34568999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCC
Q 005487 484 AYGSHGRALEALKLFGEMQQSNARPD-SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGR 561 (694)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 561 (694)
+|...|.++.|..+|.....- .|. ...++.|...|-++|++++|+..+++++ .++|+ ...|..++..|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 999999999999999999984 566 5789999999999999999999999998 78998 5699999999999999
Q ss_pred HHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHH
Q 005487 562 LQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDE 631 (694)
Q Consensus 562 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 631 (694)
.+.|++.+.++..+.|. ......++..+...|+..+|++.++.+++++|+.+.+|.+++.++--..+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999988886 57889999999999999999999999999999999999999998777666665
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-20 Score=191.12 Aligned_cols=614 Identities=13% Similarity=0.100 Sum_probs=437.6
Q ss_pred ChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCC--hhHHHHHHhhCC--CCCchhhHHHHHHH--HHccCChhHHHH
Q 005487 18 SLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQN--YDYAMLVFKTID--NPLDLSLWNGLMAS--YTKNYMYITALE 91 (694)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~--~~~~~~~~~~l~~~--~~~~~~~~~a~~ 91 (694)
-+..|..+|....+.....+...+..-. .|...|. .+.|-..|.... .|+. ....|..+ ....+++..|+.
T Consensus 109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~-~~l~~~~~~~~~A~a~F~~Vl~~sp~N--il~LlGkA~i~ynkkdY~~al~ 185 (1018)
T KOG2002|consen 109 LFDKATLLFDLADKIDMYEDSHLLVQRG-FLLLEGDKSMDDADAQFHFVLKQSPDN--ILALLGKARIAYNKKDYRGALK 185 (1018)
T ss_pred HHHHHHHHhhHHHHhhccCcchhhhhhh-hhhhcCCccHHHHHHHHHHHHhhCCcc--hHHHHHHHHHHhccccHHHHHH
Confidence 3445666666666665555555444444 3444554 588888888763 3433 23444444 457889999999
Q ss_pred HHHHhhhC-CCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcC---CChHHHHHHhccC
Q 005487 92 LFDMLLQN-PYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKC---NSFECAVKMFDEM 167 (694)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 167 (694)
+|+.+... +..+||... .+...+.+.++.+.|+..|..+.+... .++.++..|.-+-... ..+..+..++...
T Consensus 186 yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 186 YYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 99997654 233444432 334556688999999999999988642 3334444333322222 3455555555554
Q ss_pred C---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 005487 168 S---ERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQ--PNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDS 242 (694)
Q Consensus 168 ~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (694)
- ..+++..+.|...|.-.|+++.++.+...+...... .-...|-.+.+++-..|++++|...|.+..+.....-.
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 3 268889999999999999999999999998775311 22345788899999999999999999888776322223
Q ss_pred hHHHHHHHhhHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHcCC----CchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005487 243 YISSALVDMYGKCGCLEMAREVFEQTVLK---SVVAWNALIAGYSSRG----DSKSCVKLFWRMNEEGIKPTLTTISSVL 315 (694)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll 315 (694)
..+-.+..+|.+.|+++.+...|+++... +..+...+...|...+ ..+.|..++.+..+. .+.|...|..+.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~la 421 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELA 421 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHH
Confidence 34556889999999999999999987543 4455666666666554 456667777666655 345667777776
Q ss_pred HHhhccCChhhhHHHHHH----HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Ch------hHHH
Q 005487 316 MSCSRSGQLKHGKVMHGY----IIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKT-------DV------VYWN 378 (694)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~------~~~~ 378 (694)
..+....-+.. ...+.. +...+-.+.+.+.|.+...+...|++..|...|...... +. .+--
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 66655443333 555443 345565678889999999999999999999999876521 21 1222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005487 379 VMISGYVTVGDYFKALAIYSDMKEVGAKPDAV-TFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKC 457 (694)
Q Consensus 379 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (694)
.+...+-..++++.|.+.|+.+.+. .|.-. .|..++......++...|...++.+...+ ..++..+..+...+.+.
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhh
Confidence 3555666778999999999999886 45543 44455434445678888999998887754 45666677788889888
Q ss_pred CChHHHHHHHhhCCC-----CChHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 005487 458 GAVDEAFKVFNELPE-----RDLVSWTSMIAAYG------------SHGRALEALKLFGEMQQSNARPDSITFLALLSAC 520 (694)
Q Consensus 458 g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 520 (694)
..+.-|.+-|+.+.+ +|+.+.-+|...+. ..+..++|+++|.+.++.. +-|...-+.+..++
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhh
Confidence 888888885555443 56666666666543 2346788999999999874 55778888888899
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHHcCCHHH
Q 005487 521 SHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE---IREDAGLLSTLFSACRLHRDIEM 597 (694)
Q Consensus 521 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~ 597 (694)
+..|++.+|..+|.+..+.. .....+|..++.+|..+|++-.|+++|+...+ -..+..++..|+.++...|.+.+
T Consensus 657 A~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999998542 23456788999999999999999999998665 23467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHhhc-------------------CChHHHHHHHHHHHhCCCc
Q 005487 598 GEKIAKLLIEKDPDDSSTYIVLSNMYASV-------------------KKWDEVRKIRLKMKELGLR 645 (694)
Q Consensus 598 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 645 (694)
|.+.+.+++.+.|.++...++++-+..+. +..++|.++|+.+...+.+
T Consensus 735 ak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988887765543 3567788888888776654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-23 Score=198.55 Aligned_cols=421 Identities=14% Similarity=0.178 Sum_probs=346.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHcC
Q 005487 210 LTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVL---KSVVAWNALIAGYSSR 286 (694)
Q Consensus 210 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 286 (694)
...+..-..+.|++.+|++.-..+-..+ +.+......+-..+....+.+.....-....+ ....+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445556667889999988776555443 33334444444556666666655443332222 2456899999999999
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHH-HHHHHHHHhcCCHHHHHH
Q 005487 287 GDSKSCVKLFWRMNEEGIKP-TLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFIN-SSLIDLYFKCGRVSSAEN 364 (694)
Q Consensus 287 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~ 364 (694)
|+.++|+.+++.+.+. +| ....|..+..++...|+.+.|...|....+.+ |+.... +-+....-..|++.+|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999986 44 45778899999999999999999998887764 433332 334455556899999999
Q ss_pred HHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCChHHHHHHHHHHHHhCC
Q 005487 365 VFEKMSKTD---VVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPD-AVTFTSVLPACSQLAALEKGKEIHNHIIESKL 440 (694)
Q Consensus 365 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 440 (694)
.+.+..+.+ ...|+.|...+-.+|+...|+..|++.++. .|+ ...|..|...+...+.++.|...|.+.....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 988776433 368999999999999999999999999886 454 4678888889999999999999999887654
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHH
Q 005487 441 ETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RD-LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD-SITFLAL 516 (694)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 516 (694)
+....++..+.-.|-.+|.++-|+..|++..+ |+ +.+|+.|..++...|+..+|...+.+.... .|+ ....+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 44566777788889999999999999999887 44 458999999999999999999999999985 566 6889999
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCC
Q 005487 517 LSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRD 594 (694)
Q Consensus 517 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 594 (694)
...+.+.|.+++|..+|.... .+.|. ....+.|+..|..+|++++|+..|+++.+++|. ...+..++..|...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 999999999999999999988 56777 457899999999999999999999999999997 5789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 595 IEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 595 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
...|.+.+.+++..+|.-+.++.+|+.+|...|+..+|++-+++..+..
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999887544
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2e-19 Score=182.07 Aligned_cols=583 Identities=14% Similarity=0.131 Sum_probs=427.6
Q ss_pred hhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhC--CCCCch-hhHHHHHHHHHccCChhHHHHHHHH
Q 005487 19 LKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTI--DNPLDL-SLWNGLMASYTKNYMYITALELFDM 95 (694)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 95 (694)
.+.|-..|...++.. ++++-.+..-..+....|++..|..+|+.+ .+|... ...-.+.-++.+.|+.+.|+..|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 588999999998887 667666666666667788999999999994 333211 1234455666789999999999999
Q ss_pred hhhCCCCCCCcccHHHHHHHhhCCC---CchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCC--
Q 005487 96 LLQNPYLKPDSYTYPSVLKACGGLG---SVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSER-- 170 (694)
Q Consensus 96 ~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 170 (694)
..+. .|.++.++..|...-.... .+..+...+...-... +.++.+.+.|.+.|...|++..+..+...+..-
T Consensus 225 alqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 225 ALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 9987 2333444444433322333 3445555555555543 567788999999999999999999998877652
Q ss_pred ----CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 005487 171 ----DVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNS--VTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYI 244 (694)
Q Consensus 171 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (694)
-..+|..+.++|...|++++|...|.+..+. .|+. ..+..+...+.+.|+.+.+...|+.+.+.. +.+..+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 2346888999999999999999999998875 3444 355667888999999999999999999883 667788
Q ss_pred HHHHHHhhHhcC----ChHHHHHHHhcCCCC---ChhHHHHHHHHHHcCCCchHHHHHHHHHH----HCCCCCCHHHHHH
Q 005487 245 SSALVDMYGKCG----CLEMAREVFEQTVLK---SVVAWNALIAGYSSRGDSKSCVKLFWRMN----EEGIKPTLTTISS 313 (694)
Q Consensus 245 ~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~ 313 (694)
...|...|...+ ..+.|..++.+...+ |..+|-.+...+... ++..++..|.... ..+-.+.....+.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 888888888775 567788888776554 556676666665544 4444476665543 4566677889999
Q ss_pred HHHHhhccCChhhhHHHHHHHHHh---cCCCch------hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHH
Q 005487 314 VLMSCSRSGQLKHGKVMHGYIIRN---KIQGDV------FINSSLIDLYFKCGRVSSAENVFEKMSKTDVV---YWNVMI 381 (694)
Q Consensus 314 ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~ 381 (694)
+.......|+++.|...|...... ...++. .+--.+..++-..++.+.|.+.|..+.+..+. .|..++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999988766 222333 22334666777778999999999999864433 344444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHh----
Q 005487 382 SGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIES-KLETNEIVMGALLDMYAK---- 456 (694)
Q Consensus 382 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---- 456 (694)
......+...+|...++.....+ ..++..++.+...+.....+..|.+-|..+.+. ...+|..+.-+|.+.|.+
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 33334577889999999887753 344555555666788888888888877766543 223677777777776653
Q ss_pred --------cCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 005487 457 --------CGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGW 525 (694)
Q Consensus 457 --------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 525 (694)
.+..+.|+++|.+++. .|..+-|.+.-.++..|++..|..+|.+..+.. .-+..+|..+..+|...|+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHH
Confidence 3467899999998887 455667888899999999999999999999874 3467889999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHH---------------
Q 005487 526 VDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLFSAC--------------- 589 (694)
Q Consensus 526 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~--------------- 589 (694)
+..|+++|+...+++.-.-+..+...|++++.+.|++.+|.+.+..+....|.. .+...++...
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 999999999999887766678899999999999999999999999887766643 2222222111
Q ss_pred ----HHcCCHHHHHHHHHHHHhcCCC
Q 005487 590 ----RLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 590 ----~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
...+..+.|.+.|..+....+.
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1123356677777777666554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.3e-20 Score=201.50 Aligned_cols=419 Identities=13% Similarity=0.052 Sum_probs=278.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHh
Q 005487 175 WNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGK 254 (694)
Q Consensus 175 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (694)
+......+...|++++|+..|++.+.. .|+...|..+..++...|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566777788888888888887763 5676777777777777788888887777777653 4455666667777777
Q ss_pred cCChHHHHHHHhcCCCCC---hhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHH
Q 005487 255 CGCLEMAREVFEQTVLKS---VVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMH 331 (694)
Q Consensus 255 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 331 (694)
.|++++|+..|..+...+ ......++..+.. ..+........+.. ++
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~------------------------- 256 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PE------------------------- 256 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CC-------------------------
Confidence 777777766654332111 1111111111100 11111111111110 00
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-
Q 005487 332 GYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTD---VVYWNVMISG---YVTVGDYFKALAIYSDMKEVG- 404 (694)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~---~~~~~~~~~A~~~~~~m~~~g- 404 (694)
+...+..+.. |...........-+....+.+ ...+..+... ....+++++|...|+.....+
T Consensus 257 ----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 257 ----------NLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred ----------CCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 0001111111 111100111111111111100 0111111111 123467888999998888764
Q ss_pred CCC-CHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHH
Q 005487 405 AKP-DAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTS 480 (694)
Q Consensus 405 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 480 (694)
..| ....+..+...+...|+++.|...++..++.. +.....|..+..++...|++++|...|+.+.. .+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 233 34556667777788999999999999888764 33466777888889999999999999988765 45678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhc
Q 005487 481 MIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRA 559 (694)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 559 (694)
+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..++...+ ..|+ +..+..++.++...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999863 33567788888899999999999999999984 3454 66888999999999
Q ss_pred CCHHHHHHHHHhCCCCCCCH-HH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHH
Q 005487 560 GRLQEAYGILQSTPEIREDA-GL-------LSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDE 631 (694)
Q Consensus 560 g~~~~A~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 631 (694)
|++++|++.|+++.+..|+. .. +......+...|++++|...++++++++|++..++..++.++...|++++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 99999999999988766542 11 12222233446999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 005487 632 VRKIRLKMKEL 642 (694)
Q Consensus 632 A~~~~~~~~~~ 642 (694)
|++.+++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 18
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=6.9e-17 Score=162.87 Aligned_cols=626 Identities=14% Similarity=0.128 Sum_probs=391.0
Q ss_pred hhhHHHHHHHhhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhC--CCCCchhhHHHHHHHH
Q 005487 3 ITRILTLLRTCTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTI--DNPLDLSLWNGLMASY 80 (694)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~ 80 (694)
.+++...+......|++++|+.++..+++.. |.+...|..|..+|-.+|+.+++...+=.+ -+|.+.+-|..+..-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4677788888888899999999999999987 888999999999999999999998876443 4566556899999999
Q ss_pred HccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHH----HHHHhhhcCCC
Q 005487 81 TKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIAS----STAGMYAKCNS 156 (694)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 156 (694)
.+.|++++|.-.|.++.+. .|++....-.-...|-+.|+...|...+.++.....+.|..-.. ..+..+...++
T Consensus 218 ~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999987 56677777777788889999999999999999876544433333 33555667788
Q ss_pred hHHHHHHhccCCC-----CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh----------------------h
Q 005487 157 FECAVKMFDEMSE-----RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSV----------------------T 209 (694)
Q Consensus 157 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----------------------~ 209 (694)
.+.|.+.++.... -+...++.++..+.....++.+......+......+|.. .
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 8999998887654 355678999999999999999999988887622222211 1
Q ss_pred H----HHHHHHHhccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHhhHhcCChHHHHHHHhcCCCC----ChhHHHHH
Q 005487 210 L----TTVISSCARLMDLDRGKEIHKEFIKDGF--VSDSYISSALVDMYGKCGCLEMAREVFEQTVLK----SVVAWNAL 279 (694)
Q Consensus 210 ~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l 279 (694)
| ..+.-++.+.+..+....+......... ..+...+..+..+|...|.+.+|+.+|..+... +...|-.+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 1 1233445566666666666666666663 335667888888888888888888888877543 55678888
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChhhhHHHHHHHH--------HhcCCCchhHHHHHH
Q 005487 280 IAGYSSRGDSKSCVKLFWRMNEEGIKPT-LTTISSVLMSCSRSGQLKHGKVMHGYII--------RNKIQGDVFINSSLI 350 (694)
Q Consensus 280 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~ 350 (694)
..+|...|.++.|.+.|+..+.. .|+ ...-.++-..+.+.|+.++|.+.+..+. ..+..|.....-...
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 88888888888888888888775 333 3444555566777888888888877743 222334444545555
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--------------------------CChhHHHHHHHHHHhcCChHHHHHH------HH
Q 005487 351 DLYFKCGRVSSAENVFEKMSK--------------------------TDVVYWNVMISGYVTVGDYFKALAI------YS 398 (694)
Q Consensus 351 ~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~A~~~------~~ 398 (694)
..+...|+.++=..+-..|.. .+....-..+.+-.+.++.....+- +.
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 666667766653333222210 0001111112222222221111100 00
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHcccCChHHHHHHHHHHHHhCC--CCCh---hHHHHHHHHHHhcCChHHHHHHHhhCC
Q 005487 399 DMKEVGAKPDA--VTFTSVLPACSQLAALEKGKEIHNHIIESKL--ETNE---IVMGALLDMYAKCGAVDEAFKVFNELP 471 (694)
Q Consensus 399 ~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (694)
.-...|+.-+. ..+.-++.+.++.+.+++|..+...+..... .++. ..-...+.+....+++..|...++.+.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01111211111 1233444555666666666666655544321 1111 112233444455666666666666555
Q ss_pred CC-----Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 005487 472 ER-----DL---VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD--SITFLALLSACSHAGWVDEGGYYFNLMISEYN 541 (694)
Q Consensus 472 ~~-----~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 541 (694)
.. ++ ..|+..+....+.++-.--.+.+..+... .|+ +........-+...+.+..|+..+-.+..
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--- 768 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--- 768 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHH---
Confidence 42 22 24444444444444433323333332222 122 12222222234455777788877766653
Q ss_pred CCCChHHHH-HHHHHhh----------hcCCHHHHHHHHHhCCCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005487 542 IQPRNEHYS-CLIDLLG----------RAGRLQEAYGILQSTPEIR-E--DAGLLSTLFSACRLHRDIEMGEKIAKLLIE 607 (694)
Q Consensus 542 ~~p~~~~~~-~l~~~~~----------~~g~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 607 (694)
..|+.+..+ +++-++. +.-..-+++.++.+..+.. + ...++..++.+|...|=..-|+.+|+++++
T Consensus 769 ~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 769 QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 345533322 2222222 1112334566665544322 2 356778888888888989999999999998
Q ss_pred cCCCCCc------------cHHHHHHHHhhcCChHHHHHHHHH
Q 005487 608 KDPDDSS------------TYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 608 ~~p~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
..|.+.. +-.+|.-+|...|+...|.+++++
T Consensus 849 ~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 849 VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 8654222 455677788888998888888765
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.4e-20 Score=188.74 Aligned_cols=301 Identities=14% Similarity=0.119 Sum_probs=226.1
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHcccCCh
Q 005487 352 LYFKCGRVSSAENVFEKMSK---TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPD---AVTFTSVLPACSQLAAL 425 (694)
Q Consensus 352 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~ 425 (694)
.+...|++++|...|.++.+ .++.++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666666653 2334566666777777777777777777766432221 23456666677777777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC------hHHHHHHHHHHHhcCCHHHHHHH
Q 005487 426 EKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RD------LVSWTSMIAAYGSHGRALEALKL 497 (694)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~ 497 (694)
+.|..+++.+.+.. +.+..++..++.++.+.|++++|.+.++.+.. |+ ...+..++..+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776543 34566677777778888888888887777655 21 12355677788899999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 005487 498 FGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR--NEHYSCLIDLLGRAGRLQEAYGILQSTPEI 575 (694)
Q Consensus 498 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 575 (694)
++++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...+..++.+|.+.|++++|...++++.+.
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998863 334567788888999999999999999999843 344 456788899999999999999999998887
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhh---cCChHHHHHHHHHHHhCCCccCCceeE
Q 005487 576 REDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS---VKKWDEVRKIRLKMKELGLRKNPGCSW 652 (694)
Q Consensus 576 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 652 (694)
.|+...+..++..+...|++++|...++++++..|++.. +..+...+.. .|+.++|..+++++..+++.++|.+.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 888777788888999999999999999999999998764 4444444443 569999999999999999999999887
Q ss_pred EEECCE
Q 005487 653 IEIGDR 658 (694)
Q Consensus 653 ~~~~~~ 658 (694)
..+|..
T Consensus 358 ~~cg~~ 363 (389)
T PRK11788 358 RNCGFT 363 (389)
T ss_pred CCCCCC
Confidence 766554
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.6e-18 Score=184.52 Aligned_cols=331 Identities=10% Similarity=0.028 Sum_probs=262.3
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 005487 275 AWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYF 354 (694)
Q Consensus 275 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (694)
....++..+.+.|++++|..+++........+ ...+..++.+....|+++.|...++.+....+ .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 34556677888999999999999888774333 34455555666778999999999999888753 35667788888999
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHH
Q 005487 355 KCGRVSSAENVFEKMSK---TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEI 431 (694)
Q Consensus 355 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 431 (694)
..|++++|...+++... .+...+..+...+...|++++|...++.+.... |+.......+..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998764 356678888999999999999999999887653 3332222223347788999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHH----HHHHHHHHHHc
Q 005487 432 HNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALE----ALKLFGEMQQS 504 (694)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~ 504 (694)
++.+.+....++......++.++...|++++|...++.+.. .+...+..+...+...|++++ |...++++.+.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99987765444455555667788899999999999998776 456678889999999999986 89999999986
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHH-H
Q 005487 505 NARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGL-L 582 (694)
Q Consensus 505 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~ 582 (694)
. +.+...+..+...+...|++++|...++++.. ..|+ ...+..++.++.+.|++++|+..++++.+..|+... +
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 3 33467888889999999999999999999983 3565 456778899999999999999999998877776543 4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 005487 583 STLFSACRLHRDIEMGEKIAKLLIEKDPDDS 613 (694)
Q Consensus 583 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 613 (694)
..++.++...|++++|...++++++..|++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4456778889999999999999999999864
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=8.4e-18 Score=183.15 Aligned_cols=406 Identities=8% Similarity=-0.033 Sum_probs=250.2
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcC---CCCChhHHHHHHH
Q 005487 205 PNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQT---VLKSVVAWNALIA 281 (694)
Q Consensus 205 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~ 281 (694)
.+..-..-.+......|+.++|.+++..+.... +.+...+..+...+...|++++|...+++. .+.+...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344444445555666777777777777766532 444555667777777777777777777763 2334555666666
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHH
Q 005487 282 GYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSS 361 (694)
Q Consensus 282 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (694)
.+...|++++|...++++.+. .+.+.. +..+...+...|+.+.|...++.+.+..+. +...+..+..++...+..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 677777777777777777665 222233 555555666666666666666666665433 33333445555556666666
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----cccCCh---HHHHHHHH
Q 005487 362 AENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPAC-----SQLAAL---EKGKEIHN 433 (694)
Q Consensus 362 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~---~~a~~~~~ 433 (694)
|+..++.... ++.....+ . ......++... ...+.+ +.|.+.++
T Consensus 169 Al~~l~~~~~-~p~~~~~l--------~-------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDL--------E-------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHhCCC-CHHHHHHH--------H-------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 6666655543 21100000 0 00000111111 111122 45556666
Q ss_pred HHHHh-CCCCChh-HHH----HHHHHHHhcCChHHHHHHHhhCCCCC---hH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005487 434 HIIES-KLETNEI-VMG----ALLDMYAKCGAVDEAFKVFNELPERD---LV-SWTSMIAAYGSHGRALEALKLFGEMQQ 503 (694)
Q Consensus 434 ~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (694)
.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+...+ +. ....+..+|...|++++|+..|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 65543 1122111 111 11223456678888888888877621 21 222356678888888888888888776
Q ss_pred cCCCCC-----HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHhhhcCCHHHH
Q 005487 504 SNARPD-----SITFLALLSACSHAGWVDEGGYYFNLMISEYN----------IQPR---NEHYSCLIDLLGRAGRLQEA 565 (694)
Q Consensus 504 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 565 (694)
.. |. ......+..++.+.|++++|...++.+..... -.|+ ...+..++.++...|++++|
T Consensus 301 ~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 301 HP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred cC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 42 22 23455566677888888888888888773210 1122 22455677888888999999
Q ss_pred HHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 566 YGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 566 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
+++++++....|+ ...+..++..+...|+.++|++.++++++++|+++..+..++..+...|++++|+++++++++..+
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999887775564 567788888888889999999999999999999888888888889999999999998888876554
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1e-17 Score=179.29 Aligned_cols=425 Identities=13% Similarity=0.039 Sum_probs=273.7
Q ss_pred HHHHHHhhhcCCChHHHHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 005487 144 ASSTAGMYAKCNSFECAVKMFDEMSE--RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLM 221 (694)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 221 (694)
+......+.+.|++++|+..|++... |++..|..+..+|...|++++|++.++...+.+ +.+...|..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 44556678889999999999998765 677778888889999999999999999988753 234457888888899999
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005487 222 DLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNE 301 (694)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 301 (694)
++++|..-+..+...+...+... ..++..+........+...++.-.. +...+..+.. +...........-+....+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 99999888876655432222221 1222211121122334444433222 2222222222 2111111111111111000
Q ss_pred CCCCCCH-HHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------CCh
Q 005487 302 EGIKPTL-TTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSK------TDV 374 (694)
Q Consensus 302 ~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~ 374 (694)
..+.. ..+..+... . .-....+++++|.+.|+.... ...
T Consensus 286 --~~~~~~~~~~~l~~~-------------------------------~-~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 286 --LDEETGNGQLQLGLK-------------------------------S-PESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred --cccccccchHHHHHH-------------------------------H-HHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 00100 000000000 0 000123455566666655442 123
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005487 375 VYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPD-AVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDM 453 (694)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (694)
..|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|+++.|...++.+++.. +.+..++..+..+
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 45666677777788888888888877765 343 4566677777777888888888888877664 4456777788888
Q ss_pred HHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 005487 454 YAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGG 530 (694)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 530 (694)
+...|++++|...|+.... .+...+..+..++.+.|++++|+..+++.+... +.+...+..+...+...|++++|+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 8888888888888888766 345577788888889999999999999988752 334678888888899999999999
Q ss_pred HHHHHhHHhcCCCCCh-H-------HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 005487 531 YYFNLMISEYNIQPRN-E-------HYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKI 601 (694)
Q Consensus 531 ~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~ 601 (694)
..|++... +.|+. . .+...+..+...|++++|..+++++.+..|+. ..+..++..+...|++++|...
T Consensus 488 ~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99998873 33431 1 11122223344689999999999987777754 4677888899999999999999
Q ss_pred HHHHHhcCCCCC
Q 005487 602 AKLLIEKDPDDS 613 (694)
Q Consensus 602 ~~~~~~~~p~~~ 613 (694)
+++++++.+...
T Consensus 565 ~e~A~~l~~~~~ 576 (615)
T TIGR00990 565 FERAAELARTEG 576 (615)
T ss_pred HHHHHHHhccHH
Confidence 999998877543
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=5.7e-15 Score=143.41 Aligned_cols=609 Identities=10% Similarity=0.072 Sum_probs=447.3
Q ss_pred CChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhC--CCCCchhhHHHHHHHHHccCChhHHHHHHH
Q 005487 17 KSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTI--DNPLDLSLWNGLMASYTKNYMYITALELFD 94 (694)
Q Consensus 17 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 94 (694)
++++.|..++....+.+ |.++..+..-.+.=-..|++..|..+..+- ..|.+.+.|---+ +-..++.|..+.-
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 36667777777777766 555666655555555667777777666543 1233332332222 2233444555555
Q ss_pred HhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCccc
Q 005487 95 MLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVAS 174 (694)
Q Consensus 95 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (694)
...+. +|.++..|. .+.--..+...=.+++...+++ ++.++..|... ....+.+.|+-++.+..+--+.
T Consensus 340 ~Avr~--~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAveccp~- 408 (913)
T KOG0495|consen 340 NAVRF--LPTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECCPQ- 408 (913)
T ss_pred HHHHh--CCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhccc-
Confidence 55543 233333332 2222233344445666666665 45555555543 3455666688888777651111
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH----HhCCCCchhHHHHHHH
Q 005487 175 WNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFI----KDGFVSDSYISSALVD 250 (694)
Q Consensus 175 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 250 (694)
-..|.-++.+..-++.|..+++..++. ++.+...|.+....--..|+.+.+.+++.+-+ ..|+..+...|..=..
T Consensus 409 s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 409 SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 122334566777788899999988875 67778888888887788888888888876544 4577788777777777
Q ss_pred hhHhcCChHHHHHHHhcCCCC------ChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCh
Q 005487 251 MYGKCGCLEMAREVFEQTVLK------SVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQL 324 (694)
Q Consensus 251 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 324 (694)
.|-..|..--+..+...+..- --.+|..-...|.+.+.++-|..+|...++. .+.+...|......--..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH
Confidence 777778777777777654321 2357888888899999999999999888776 445566777777777778889
Q ss_pred hhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005487 325 KHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSK---TDVVYWNVMISGYVTVGDYFKALAIYSDMK 401 (694)
Q Consensus 325 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 401 (694)
+....+++.+....+ .....+-.....+-..|+...|+.++...-+ .+...|-+-+.....+.+++.|..+|.+..
T Consensus 567 Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999998888754 3556666777778888999999999887753 345688888888999999999999999887
Q ss_pred HcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChHHH
Q 005487 402 EVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--R-DLVSW 478 (694)
Q Consensus 402 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 478 (694)
.. .|+...|..-+..---.++.++|.+++++.++. ++.-...|..+.+.+.+.++++.|...|..-.+ | .+..|
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 75 567777766666666688999999999888775 455677888899999999999999999988776 4 45588
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhh
Q 005487 479 TSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGR 558 (694)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 558 (694)
-.|...--+.|....|..++++..-.+ +-|...|...++.-.+.|+.+.|..++.+++.+ .+.+...|..-+....+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccC
Confidence 888888889999999999999998875 557888999999999999999999999999854 34455677777777778
Q ss_pred cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 559 AGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 559 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
.++.-.+...+++. +.|+.++..++..+....++++|.+.|+++++.+|++..+|..+-..+...|.-++-.+++.+
T Consensus 800 ~~rkTks~DALkkc---e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 800 PQRKTKSIDALKKC---EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred cccchHHHHHHHhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88877777777764 577788888889999999999999999999999999999999999999999998888999998
Q ss_pred HHhCCCccCCceeEEEE
Q 005487 639 MKELGLRKNPGCSWIEI 655 (694)
Q Consensus 639 ~~~~~~~~~~~~~~~~~ 655 (694)
..... +..|..|..+
T Consensus 877 c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 877 CETAE--PTHGELWQAV 891 (913)
T ss_pred HhccC--CCCCcHHHHH
Confidence 87654 4455566543
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.7e-18 Score=182.82 Aligned_cols=328 Identities=11% Similarity=0.002 Sum_probs=271.8
Q ss_pred HHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 005487 309 TTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSK---TDVVYWNVMISGYV 385 (694)
Q Consensus 309 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 385 (694)
.....++..+.+.|+++.|..++.......+.+... ...++.+....|+++.|...|+++.. .+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445667788899999999999999999887665444 44455777789999999999999864 35567888899999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005487 386 TVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFK 465 (694)
Q Consensus 386 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 465 (694)
..|++++|+..+++..+.. +.+...+..+...+...|+++.|...++.+......+ ...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998862 3356677888889999999999999999887765333 3333333 34788999999999
Q ss_pred HHhhCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH----HHHHHHHhH
Q 005487 466 VFNELPER----DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDE----GGYYFNLMI 537 (694)
Q Consensus 466 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~ 537 (694)
.++.+... +...+..+..++...|++++|+..++++.... +.+...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987662 23344556778899999999999999999864 3457788888999999999986 899999998
Q ss_pred HhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 538 SEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 538 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
...|+ ...+..++.++.+.|++++|+..++++.+..|+ ...+..++.++...|++++|...++++++.+|+++..
T Consensus 278 ---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 ---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred ---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 34565 568889999999999999999999998887776 5677788889999999999999999999999998877
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 616 YIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 616 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
+..++.++...|++++|.+.++++.+...
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 77789999999999999999999877654
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3.4e-17 Score=178.40 Aligned_cols=416 Identities=11% Similarity=0.029 Sum_probs=291.5
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005487 171 DVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVD 250 (694)
Q Consensus 171 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 250 (694)
++....-.+.+....|+.++|++++....... +.+...+..+...+...|++++|..++++.++.. +.+......++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44455667778889999999999999997632 4455568889999999999999999999998874 556777888999
Q ss_pred hhHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhh
Q 005487 251 MYGKCGCLEMAREVFEQTVL---KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHG 327 (694)
Q Consensus 251 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 327 (694)
++...|++++|...+++... .+.. +..+...+...|+.++|+..++++.+... .+...+..+...+...+..+.|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 99999999999999998743 3556 88888899999999999999999998732 2344555667777788888989
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHHHc-
Q 005487 328 KVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDY---FKALAIYSDMKEV- 403 (694)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~m~~~- 403 (694)
...++.+.. .|+.. .. + ....+...... .+.......+++ ++|+..++.+.+.
T Consensus 170 l~~l~~~~~---~p~~~--~~-l-------~~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 170 LGAIDDANL---TPAEK--RD-L-------EADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred HHHHHhCCC---CHHHH--HH-H-------HHHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 888765543 22200 00 0 00000000000 000001111222 5666677776643
Q ss_pred CCCCCHH-HHH----HHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC--
Q 005487 404 GAKPDAV-TFT----SVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RD-- 474 (694)
Q Consensus 404 g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-- 474 (694)
...|+.. .+. ..+.++...++.++|+..|+.+.+.+.+........+..+|...|++++|+..|+.+.. |.
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 1222221 111 11233455677888888888877665321111222356678888888888888887655 21
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---hhHHHHHHHHHccCCHHHHHHHHHHhH
Q 005487 475 ---LVSWTSMIAAYGSHGRALEALKLFGEMQQSNA-----------RPDS---ITFLALLSACSHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 475 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 537 (694)
......+..++...|++++|...++++..... .|+. ..+..+...+...|++++|+.+++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23455566677888888999888888876521 1232 244566778889999999999999998
Q ss_pred HhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 538 SEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 538 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
.. .|+ ...+..++.++...|++++|++.++++.+..|+ ...+...+..+...|++++|+..++++++..|+++.+
T Consensus 387 ~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 387 YN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred Hh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 43 444 668889999999999999999999999988886 5667777778888999999999999999999998754
Q ss_pred H
Q 005487 616 Y 616 (694)
Q Consensus 616 ~ 616 (694)
.
T Consensus 464 ~ 464 (765)
T PRK10049 464 Q 464 (765)
T ss_pred H
Confidence 3
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=4e-18 Score=173.54 Aligned_cols=294 Identities=11% Similarity=0.081 Sum_probs=198.3
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 005487 281 AGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVS 360 (694)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 360 (694)
..+...|++++|...|.++.+.+ +.+..++..+...+...|+++.|..+++.+......++..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------------- 105 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------------- 105 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH----------------
Confidence 34456667777777777776652 1223344455555555555555555555444322111000
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCC
Q 005487 361 SAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKL 440 (694)
Q Consensus 361 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 440 (694)
....+..++..|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+.
T Consensus 106 ------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 106 ------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 01234555566666666666666666665542 23455566666666666666666666666655442
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 005487 441 ETN----EIVMGALLDMYAKCGAVDEAFKVFNELPE--R-DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITF 513 (694)
Q Consensus 441 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 513 (694)
.+. ...+..++..+.+.|++++|...|+++.+ | +...+..++..+...|++++|.++++++...+......++
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 221 12345567777888888999888888765 3 3457778889999999999999999999876322224567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--
Q 005487 514 LALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRL-- 591 (694)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~-- 591 (694)
..++.+|...|++++|...++.+.+ ..|+...+..++..+.+.|++++|..+++++.+..|+...+..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 8888899999999999999999983 36777777889999999999999999999988888988888777766554
Q ss_pred -cCCHHHHHHHHHHHHh
Q 005487 592 -HRDIEMGEKIAKLLIE 607 (694)
Q Consensus 592 -~~~~~~A~~~~~~~~~ 607 (694)
.|+.+++...++++++
T Consensus 330 ~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 330 EEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCccchhHHHHHHHHHH
Confidence 4578888887777764
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=1.7e-15 Score=152.99 Aligned_cols=599 Identities=12% Similarity=0.020 Sum_probs=404.8
Q ss_pred hhhhHHHHHHhcCCChhHHHHHHhhCC--CCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHh
Q 005487 39 ALCKSLINLYFSCQNYDYAMLVFKTID--NPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKAC 116 (694)
Q Consensus 39 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (694)
.-.......+...|++++|..++.++. .|....+|.+|...|-.+|+.++++..+-.+--. .+-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 334444555566699999999999984 3655669999999999999999998877665543 456678899999999
Q ss_pred hCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCc-cc-------HHHHHHHHHhCCCh
Q 005487 117 GGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDV-AS-------WNTVISCYYQDGQA 188 (694)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-------~~~li~~~~~~~~~ 188 (694)
.+.|++.+|.-+|.++++.. +++....-.-+.+|-+.|+...|.+.|.++.+.++ +. -..++..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999986 55555555667889999999999999998876333 11 22345667777888
Q ss_pred hHHHHHHHHHHhC-CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhC---------------------------CCC
Q 005487 189 EKALELFKKMRGS-GFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDG---------------------------FVS 240 (694)
Q Consensus 189 ~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~ 240 (694)
+.|++.++..... +-..+...++.++..+.....++.+......+.... ..+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999888762 223455577888888888888888888777766622 122
Q ss_pred chhH-HHHHHHhhHhcCChHHHHHHHhcC----CCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005487 241 DSYI-SSALVDMYGKCGCLEMAREVFEQT----VLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVL 315 (694)
Q Consensus 241 ~~~~-~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 315 (694)
+..+ ...+.-...+.+...+++.-|-.. +..++..|.-+..++...|++..|+.+|..+.....--+...|..+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2222 111111222334444444433221 22356778889999999999999999999998875555667888899
Q ss_pred HHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------------hHHHHHHHH
Q 005487 316 MSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDV------------VYWNVMISG 383 (694)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------~~~~~l~~~ 383 (694)
..+...|..+.|.+.++.++... +.+..+-..|...+-+.|+.++|.+.+..+..||. ...-.....
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998875 33555667788899999999999999999876552 122233456
Q ss_pred HHhcCChHHHHHHHHHHHHcC----------------------CCCCHHHHHHHHHHHcccCChHHHHHHHHH------H
Q 005487 384 YVTVGDYFKALAIYSDMKEVG----------------------AKPDAVTFTSVLPACSQLAALEKGKEIHNH------I 435 (694)
Q Consensus 384 ~~~~~~~~~A~~~~~~m~~~g----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~ 435 (694)
+.+.|+.++=+.+-..|+..+ ......+...++.+-.+.++......-... .
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~ 615 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAV 615 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhh
Confidence 677888777555555544321 111122222333333333332222211111 1
Q ss_pred HHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----ChH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005487 436 IESKLETN--EIVMGALLDMYAKCGAVDEAFKVFNELPER-----DLV----SWTSMIAAYGSHGRALEALKLFGEMQQS 504 (694)
Q Consensus 436 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (694)
...++..+ -..+..++..+++.+++++|+.+...+... +.. .-...+.+....+++..|...++.|+..
T Consensus 616 e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 616 ELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11233222 235667788899999999999999887761 221 2344566777889999999999999875
Q ss_pred -CC--CCC-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC
Q 005487 505 -NA--RPD-SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR--NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED 578 (694)
Q Consensus 505 -~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 578 (694)
+. .|. ...|+..++.+.+.++-.--.+++..+. ...|+ +......+..+...+.+.-|+..+-++....|+
T Consensus 696 ~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd 772 (895)
T KOG2076|consen 696 FQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD 772 (895)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC
Confidence 11 232 2345545555666555444445544443 22232 333344466677788899999888887767777
Q ss_pred HHHHHHHHH-HHH----------HcCCHHHHHHHHHHHHhcCCC--CCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 579 AGLLSTLFS-ACR----------LHRDIEMGEKIAKLLIEKDPD--DSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 579 ~~~~~~l~~-~~~----------~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
.+..+.+++ ++. ++-..-++..++++-.++.-. .-.+.+++|.+|...|=..-|.+++++...-.+
T Consensus 773 ~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 544443322 221 122355777888777776643 667899999999999999999999999876543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=6.5e-16 Score=164.65 Aligned_cols=439 Identities=9% Similarity=0.034 Sum_probs=278.7
Q ss_pred HHhhhcCCChHHHHHHhccCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh-hH--HHHHHHHhccC
Q 005487 148 AGMYAKCNSFECAVKMFDEMSERDVA---SWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSV-TL--TTVISSCARLM 221 (694)
Q Consensus 148 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~--~~ll~~~~~~~ 221 (694)
+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+.. .+ ..+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 33467888888888888888763332 23477778888888888888888877 23222 22 22345677778
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHc--CCCchHHHHHHHHH
Q 005487 222 DLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSS--RGDSKSCVKLFWRM 299 (694)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m 299 (694)
++++|.++++++.+.. +.++..+..++..+...++.++|++.++++...++.....+..++.. .++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888888888875 44566666777888888888888888888766554433333334333 45555588888888
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 005487 300 NEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNV 379 (694)
Q Consensus 300 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 379 (694)
.+.. +-+...+.....+..+.|-...|.++...- |+..+-.-... =+.+.|.+..+....++.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~----- 258 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMAVLPTR----- 258 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhcccccc-----
Confidence 7762 223445555566666666666665544431 11111100000 001111111111100000
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHc-CCCCCH-HH----HHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005487 380 MISGYVTVG---DYFKALAIYSDMKEV-GAKPDA-VT----FTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGAL 450 (694)
Q Consensus 380 l~~~~~~~~---~~~~A~~~~~~m~~~-g~~p~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 450 (694)
.... -.+.|+.-++.+... +..|.. .. ..-.+-++...++...++..++.+...+.+....+..++
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0011 124455555555542 222322 11 223345677788888888888888887766667777888
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH
Q 005487 451 LDMYAKCGAVDEAFKVFNELPER---------DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNA-----------RPDS 510 (694)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~~ 510 (694)
..+|...+++++|..+|..+..+ +......|.-++...+++++|..+++++.+... .||+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 88888888888888888877541 122346678888888888888888888887311 1222
Q ss_pred ---hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHH
Q 005487 511 ---ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLF 586 (694)
Q Consensus 511 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~ 586 (694)
..+..++..+...|++.+|.+.++.+... -+-+......++.++...|.+.+|...++.+....|+. ......+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 23444556677888888888888888732 23345677788888888888888888887777667754 4555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 587 SACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 587 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
.++...+++++|.....++++..|+++.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 67777888888888888888888887744
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2e-15 Score=161.05 Aligned_cols=460 Identities=10% Similarity=0.005 Sum_probs=252.7
Q ss_pred HHccCChhHHHHHHHHhhhCCCCCCCc-ccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChH
Q 005487 80 YTKNYMYITALELFDMLLQNPYLKPDS-YTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFE 158 (694)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 158 (694)
..+.|++..|++.|++..+. .|+. .....++..+...|+.++|...++.... ..+........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 35666666666666666654 2332 1222445555555666666666665551 11111222222244555556666
Q ss_pred HHHHHhccCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 005487 159 CAVKMFDEMSE--R-DVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIK 235 (694)
Q Consensus 159 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 235 (694)
+|+++|+++.+ | ++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+.++++.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 66666666544 1 2334445555556666666666666666553 34444443333333333444446666666666
Q ss_pred hCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCC-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 005487 236 DGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLK-SVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSV 314 (694)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 314 (694)
.. |.+...+..+...+.+.|-...|.++..+-+.- +...+..+ . .+.|.+.+ +.+..++..-
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~v----r~a~~~~~~~---- 260 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQV----RMAVLPTRSE---- 260 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHHH----hhcccccccc----
Confidence 53 444555555555666666666665555543311 01000000 0 00011111 0000000000
Q ss_pred HHHhhccCChhhhHHHHHHHHHhc-CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005487 315 LMSCSRSGQLKHGKVMHGYIIRNK-IQGD-VFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFK 392 (694)
Q Consensus 315 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (694)
-.+.--.+.+..-++.+...- ..|. ...+ ..+..-.+.++...|++.+
T Consensus 261 ---~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~---------------------------~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 261 ---TERFDIADKALADYQNLLTRWGKDPEAQADY---------------------------QRARIDRLGALLVRHQTAD 310 (822)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhccCCCccchHH---------------------------HHHHHHHHHHHHHhhhHHH
Confidence 000000111111111111110 0000 0000 0111223445566677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCC-----CCChhHHHHHHHHHHhcCChHHHHHHH
Q 005487 393 ALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKL-----ETNEIVMGALLDMYAKCGAVDEAFKVF 467 (694)
Q Consensus 393 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (694)
+++.|+.+...|.+....+-..+..+|...+.+++|..+++.+..... +++......|..+|...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 777777777666554455666677777777777777777777655321 223333456777777777777777777
Q ss_pred hhCCC--C-------------Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHH
Q 005487 468 NELPE--R-------------DL---VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEG 529 (694)
Q Consensus 468 ~~~~~--~-------------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 529 (694)
+.+.+ | |+ ..+..++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 76654 1 11 134556778899999999999999998864 55788889999999999999999
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005487 530 GYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIE 596 (694)
Q Consensus 530 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 596 (694)
...++.+. .+.|+ ..+....+..+...|++++|..+.+...+..|+......+-.....+..++
T Consensus 470 ~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r~~~~h~~~~ 534 (822)
T PRK14574 470 EQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDRQRKVHNMYE 534 (822)
T ss_pred HHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhhhHH
Confidence 99998776 45676 456778899999999999999999998887787665555554443344444
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=4.4e-14 Score=137.41 Aligned_cols=547 Identities=12% Similarity=0.098 Sum_probs=420.5
Q ss_pred cCCChhHHHHHHhhCCC--CCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHH
Q 005487 50 SCQNYDYAMLVFKTIDN--PLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKM 127 (694)
Q Consensus 50 ~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 127 (694)
+....+.|..+...... |.++-.|..-+. -..+...=..++++.++. +|.+...|...+ ...+.+.|.-
T Consensus 327 RLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWKaAV----elE~~~dari 397 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFLPTSVRLWLKAAD---LESDTKNKKRVLRKALEH--IPRSVRLWKAAV----ELEEPEDARI 397 (913)
T ss_pred hcCChHHHHHHHHHHHHhCCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHHHHH----hccChHHHHH
Confidence 44455556665555432 333312322221 112223334566677665 555555565444 3456666888
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHH----Hh
Q 005487 128 IHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSE---RDVASWNTVISCYYQDGQAEKALELFKKM----RG 200 (694)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~ 200 (694)
++....+. .+.+...|.+ |++...++.|..++.+.++ .+...|-+-...--.+|+.+....++.+- ..
T Consensus 398 lL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 398 LLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 88888876 3444555544 6677788999999988876 46677777766677889988888877654 55
Q ss_pred CCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHhhHhcCChHHHHHHHhcCCC---CChhH
Q 005487 201 SGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSD--SYISSALVDMYGKCGCLEMAREVFEQTVL---KSVVA 275 (694)
Q Consensus 201 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 275 (694)
.|+..+...|..=...|-..|..-.+..+....+..|+... ..++..-...|.+.+.++-|+.+|....+ .+...
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl 552 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL 552 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH
Confidence 79999999999999999999999999999999998887553 46888888999999999999999987654 45677
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 005487 276 WNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFK 355 (694)
Q Consensus 276 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (694)
|...+..--..|..+....+|++.... ++-....|.......-..|+...|..++..+.+.... +..++-+-+.....
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~e 630 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhc
Confidence 888777777889999999999999887 4444455555566677789999999999999888754 88889999999999
Q ss_pred cCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCChHHHHHHH
Q 005487 356 CGRVSSAENVFEKMS--KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDA-VTFTSVLPACSQLAALEKGKEIH 432 (694)
Q Consensus 356 ~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 432 (694)
...+++|..+|.+.. .+....|.--+...--.++.++|++++++.++. -|+- ..|..+.+.+.+.++.+.|.+.|
T Consensus 631 n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 631 NDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999876 456667777777777789999999999998886 5654 45666777888899999999888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005487 433 NHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD 509 (694)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 509 (694)
..-.+. .|.....|..+...-.+.|.+-.|..+++.... .+...|...++.-.+.|..+.|..+..+..+. ++.+
T Consensus 709 ~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~s 786 (913)
T KOG0495|consen 709 LQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSS 786 (913)
T ss_pred Hhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcc
Confidence 765443 466778888899999999999999999998765 45678999999999999999999999999886 3445
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHH
Q 005487 510 SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSA 588 (694)
Q Consensus 510 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 588 (694)
...|..-+...-+.++-......+++ ..-|+.+...++..+....++++|.+.|.++.+..|| .++|.-+...
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 56676666666555554444444433 3456667778899999999999999999999987776 5789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 005487 589 CRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNM 622 (694)
Q Consensus 589 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 622 (694)
+..+|.-+.-.+++.+.....|.+...|.....-
T Consensus 861 el~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 9999999999999999999999998888877643
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.6e-15 Score=139.87 Aligned_cols=408 Identities=13% Similarity=0.098 Sum_probs=235.7
Q ss_pred hCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcC--CChh-HHHHHHhhCCCC--CchhhHHHHHHHHHccCChhH
Q 005487 14 TGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSC--QNYD-YAMLVFKTIDNP--LDLSLWNGLMASYTKNYMYIT 88 (694)
Q Consensus 14 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~-~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 88 (694)
..+|..+++.-++++|...|++.+..+-..|++.-+-- .++- .-++.|=.+.+. ++..+| +.|...+
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD 197 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH
Confidence 45789999999999999999999988777766653322 2222 223334333221 111122 1122111
Q ss_pred HHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCC
Q 005487 89 ALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMS 168 (694)
Q Consensus 89 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 168 (694)
-+|+. .+-...++..++.+.++.-..+.|..++++........+..++|.+|.+-.-.-+ .+++.+|.
T Consensus 198 --L~~E~------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi 265 (625)
T KOG4422|consen 198 --LLFET------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI 265 (625)
T ss_pred --HHHhh------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH
Confidence 11221 1223344555555555555555555555555444444555555555443322222 22333332
Q ss_pred ----CCCcccHHHHHHHHHhCCChh----HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhH-HHHHHHHHHHh---
Q 005487 169 ----ERDVASWNTVISCYYQDGQAE----KALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDR-GKEIHKEFIKD--- 236 (694)
Q Consensus 169 ----~~~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--- 236 (694)
.||..++|+++.+..+.|+++ .|++++.+|++-|+.|...+|..+|..+++.++..+ +-.++.++...
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 255555555555555555543 356778888999999999999999998888887754 44444444432
Q ss_pred -CC----CCchhHHHHHHHhhHhcCChHHHHHHHhcCCC--------C---ChhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005487 237 -GF----VSDSYISSALVDMYGKCGCLEMAREVFEQTVL--------K---SVVAWNALIAGYSSRGDSKSCVKLFWRMN 300 (694)
Q Consensus 237 -~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 300 (694)
.+ +.+...|..-+..|.+..+.+-|.++..-+.. + ...-|..+....+.....+.....|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12 23455677777888888888888776643322 1 22345667777788888999999999998
Q ss_pred HCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcC-CHH-H------------HHHHH
Q 005487 301 EEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCG-RVS-S------------AENVF 366 (694)
Q Consensus 301 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~------------A~~~~ 366 (694)
-.-+-|+..+...++++....|.++-..++|..++..|.........-++..+++.. +.. - |..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999998886655555555555555443 110 0 00111
Q ss_pred hcC-------CC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHcccCChHHHHHHHH
Q 005487 367 EKM-------SK--TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGA----KPDAVTFTSVLPACSQLAALEKGKEIHN 433 (694)
Q Consensus 367 ~~~-------~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 433 (694)
+.. .+ -.....+...-.+.+.|..++|.++|..+.+.+- .|......-++......+++..|..+++
T Consensus 506 e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQ 585 (625)
T ss_pred HHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 100 00 1222334444445556666666666655543321 2222333344444555555555555555
Q ss_pred HHHHhCCC
Q 005487 434 HIIESKLE 441 (694)
Q Consensus 434 ~~~~~~~~ 441 (694)
.+...+.+
T Consensus 586 ~a~~~n~~ 593 (625)
T KOG4422|consen 586 LASAFNLP 593 (625)
T ss_pred HHHHcCch
Confidence 55444433
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=4.5e-16 Score=144.40 Aligned_cols=273 Identities=13% Similarity=0.095 Sum_probs=209.9
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHH----H--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC
Q 005487 351 DLYFKCGRVSSAENVFEKMSKTDVVYWNV----M--ISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAA 424 (694)
Q Consensus 351 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----l--~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 424 (694)
..|.+.|+++.|++++.-..+.|..+-.+ + +..+....++..|...-+..+... +-++.....-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 34677888888888887776554332221 1 222222345666666655544332 2333333333344566899
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005487 425 LEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEM 501 (694)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (694)
+++|.+.|++.+..+-......|+ +.-.+...|++++|++.|-++.. .+......+...|-...++..|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999998766444444444 45557788999999999987765 67778888999999999999999999988
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHH
Q 005487 502 QQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGL 581 (694)
Q Consensus 502 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 581 (694)
... ++.|+..+..|...|-+.|+-..|.+++..-.+ -++.+.++...|+..|....-+++|+.+|+++.-++|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 875 455788999999999999999999988766542 34566889999999999999999999999998778999999
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCC
Q 005487 582 LSTLFSACR-LHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKK 628 (694)
Q Consensus 582 ~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 628 (694)
|..++..|. +.|++.+|...++......|.+...+..|.+++...|-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998887765 57999999999999999999999999999999888773
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.3e-14 Score=134.04 Aligned_cols=447 Identities=14% Similarity=0.112 Sum_probs=296.8
Q ss_pred CchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHH---HHcCCCchhHH
Q 005487 68 LDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLI---KTGFLLDVVIA 144 (694)
Q Consensus 68 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~ 144 (694)
..+++=+.|+.. ..+|....+.-+|+.|.+. |++.+...-..+++..+-.++-+--..-+++.+ +.|- .+..+
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~s- 189 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSS- 189 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccc-
Confidence 334344555543 5677888888899999988 777776665555544332222111122222222 2221 11122
Q ss_pred HHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChh
Q 005487 145 SSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLD 224 (694)
Q Consensus 145 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 224 (694)
.+.|++.+ ++-+....+..++..+|.++++--..++|.++|++......+.+..+||.+|.+-.-..+
T Consensus 190 -------WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-- 257 (625)
T KOG4422|consen 190 -------WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-- 257 (625)
T ss_pred -------cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc--
Confidence 24455444 444444457789999999999999999999999999888789999999999876543322
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 005487 225 RGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGI 304 (694)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 304 (694)
.+++.+|....+.||..|+|+++.+..+.|+++.|++ .|.+++.+|++-|+
T Consensus 258 --K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGV 308 (625)
T KOG4422|consen 258 --KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGV 308 (625)
T ss_pred --HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCC
Confidence 7889999999999999999999999999998887755 36788889999999
Q ss_pred CCCHHHHHHHHHHhhccCChhhh-HHHHHHHHH----hcCCC----chhHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 005487 305 KPTLTTISSVLMSCSRSGQLKHG-KVMHGYIIR----NKIQG----DVFINSSLIDLYFKCGRVSSAENVFEKMSK---- 371 (694)
Q Consensus 305 ~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 371 (694)
.|...+|..++..+++.++..+. ..+..++.. ..++| +...|...+..|.+..+.+-|..+-.-+..
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 99999999999999888887553 333333332 22322 455667777888888888888877665542
Q ss_pred ----CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCCh
Q 005487 372 ----TD---VVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNE 444 (694)
Q Consensus 372 ----~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (694)
++ ..-|..+....++....+.-+..|+.|+-.-+-|+..+...++++....+.++-..+++..++..|.....
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 11 23456677777888888999999999998888899999999999999999999999999999887755444
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 005487 445 IVMGALLDMYAKCGAVDEAFKVFNELPERDLV---SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACS 521 (694)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 521 (694)
.....+...+++.+- .|+.. -+..++.-++. .-.+.....-.++.+.. ......+.++..+.
T Consensus 469 ~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 469 DLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQD--WPATSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHH
Confidence 444434444433320 12111 11111111110 01111122223444433 33445566666677
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHH---HHHHHhhhcCCHHHHHHHHHhCCC
Q 005487 522 HAGWVDEGGYYFNLMISEYNIQPRNEHYS---CLIDLLGRAGRLQEAYGILQSTPE 574 (694)
Q Consensus 522 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~ 574 (694)
+.|..++|.+++..+.++.+--|.....+ .+++.-.+.+..-.|+..++-+..
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888888865544445444444 445555667778888888887754
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.4e-14 Score=132.85 Aligned_cols=214 Identities=16% Similarity=0.134 Sum_probs=148.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHH
Q 005487 422 LAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLF 498 (694)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 498 (694)
.|+.-.+.+-++..++....+. ..|-.+..+|....+.++-...|+.... .|+.+|..-.+.+.-.++++.|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555432222 1244455556666666666666666554 34556666666666677778888888
Q ss_pred HHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC
Q 005487 499 GEMQQSNARP-DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE 577 (694)
Q Consensus 499 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 577 (694)
++.+.. .| +...|..+.-+..++++++++...|++..++ ++--++.|+..+.++..++++++|.+.|+.+.++.|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 887774 34 4566777777777777888888888888753 334466777778888888888888888888776666
Q ss_pred CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 578 DA--------GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 578 ~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.. ...+..+...+-.+|+..|+.+++++++++|....+|..|+.+..++|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 51 1122222222334899999999999999999999999999999999999999999998754
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=5.7e-17 Score=155.74 Aligned_cols=256 Identities=20% Similarity=0.203 Sum_probs=115.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005487 380 MISGYVTVGDYFKALAIYSDMKEVGAKPDAVTF-TSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCG 458 (694)
Q Consensus 380 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (694)
+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|.+.++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345566777777777777554443323443333 33444556677888888888888765532 55566667766 6889
Q ss_pred ChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 005487 459 AVDEAFKVFNELPE--RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSN-ARPDSITFLALLSACSHAGWVDEGGYYFNL 535 (694)
Q Consensus 459 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (694)
++++|.+++...-+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988877654 666778888889999999999999999987542 244667788888899999999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 005487 536 MISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEI-REDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDS 613 (694)
Q Consensus 536 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 613 (694)
+.+ ..|+ ......++..+...|+.+++.++++...+. +.++..|..++.++...|++++|...++++++.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 984 3675 667888999999999999988888876553 45667888999999999999999999999999999999
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.....+++++...|+.++|.++.+++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=5.5e-12 Score=127.36 Aligned_cols=601 Identities=14% Similarity=0.086 Sum_probs=325.0
Q ss_pred hHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCC---CCchhhHHHHHHHHHccCChhHHHHHHHHhh
Q 005487 21 EGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDN---PLDLSLWNGLMASYTKNYMYITALELFDMLL 97 (694)
Q Consensus 21 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 97 (694)
....++..+...|+.|+..+|.++|.-|+..|+++.|- .|.-|.- |-....++.++.+..+.++.+.+.
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 34578888999999999999999999999999999998 6665532 222224555665555555554432
Q ss_pred hCCCCCCCcccHHHHHHHhhCCCCchh---HHHHHHHHH----HHcCC-----------------CchhHHHHHHHhhhc
Q 005487 98 QNPYLKPDSYTYPSVLKACGGLGSVGI---GKMIHTHLI----KTGFL-----------------LDVVIASSTAGMYAK 153 (694)
Q Consensus 98 ~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~~-----------------~~~~~~~~l~~~~~~ 153 (694)
.|.+.+|..++.+|...||+.. +++.+..+. ..|+- ||.. ..+....-
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~ 151 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVL 151 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHH
Confidence 4555666666666666665433 222111111 11110 1110 11111222
Q ss_pred CCChHHHHHHhcc---------------------------------CCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 005487 154 CNSFECAVKMFDE---------------------------------MSE-RDVASWNTVISCYYQDGQAEKALELFKKMR 199 (694)
Q Consensus 154 ~g~~~~A~~~~~~---------------------------------~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 199 (694)
.|-++.+++++.. ..+ +++.+|..++.+-.-+|+.+.|..++.+|+
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2333333333322 222 566777777777778888888888888888
Q ss_pred hCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHH
Q 005487 200 GSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNAL 279 (694)
Q Consensus 200 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 279 (694)
+.|++.+..-|-.++.+ .++...+..+++-|...|+.|+..|+...+..+...|....+.+..+.-..-....+..+
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 88887777766555544 677777888888888888888888887776666665542222111110000011122222
Q ss_pred HHHHHcCCCc-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCC---CchhHHHHHHH
Q 005487 280 IAGYSSRGDS-----KSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQ---GDVFINSSLID 351 (694)
Q Consensus 280 i~~~~~~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~ 351 (694)
.++.....+. .-....+++..-.|+......|..... ....|.-+.++++...+..-... .++..+..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 2221111111 111122222222233333333332222 22345555555555554332211 12223333333
Q ss_pred HHHhc----------------------CCHHHHHHHHhcCCCCChh----------------------------HHHHHH
Q 005487 352 LYFKC----------------------GRVSSAENVFEKMSKTDVV----------------------------YWNVMI 381 (694)
Q Consensus 352 ~~~~~----------------------~~~~~A~~~~~~~~~~~~~----------------------------~~~~l~ 381 (694)
-|.+. .+..+..++..... ||.. .-+.++
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lr-kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLR-KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhC-cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 33322 12222222222221 2210 011222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCC
Q 005487 382 SGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIES--KLETNEIVMGALLDMYAKCGA 459 (694)
Q Consensus 382 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 459 (694)
..+.+.-+..++...-++.... ..+ ..|..|+.-+......+.|..+.+++... .+..+..-+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 2233333333333222222221 111 55777888888888888888888877432 334566677788888999999
Q ss_pred hHHHHHHHhhCCC-----CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------------------
Q 005487 460 VDEAFKVFNELPE-----RD-LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARP------------------------- 508 (694)
Q Consensus 460 ~~~A~~~~~~~~~-----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p------------------------- 508 (694)
...+..++.++.+ ++ ..++-.++......|+.+...++.+-+...|+..
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEE 623 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHH
Confidence 9999999888876 21 2244456666777888888888888776655321
Q ss_pred -----CHhhHHHHHHH---------------------HHccCCHHHHHHHHHHh-----------HHhcCCCCC------
Q 005487 509 -----DSITFLALLSA---------------------CSHAGWVDEGGYYFNLM-----------ISEYNIQPR------ 545 (694)
Q Consensus 509 -----~~~~~~~l~~~---------------------~~~~g~~~~A~~~~~~~-----------~~~~~~~p~------ 545 (694)
.+.....+.+. |.+.|++.+|..+.+.= .....+.|-
T Consensus 624 qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~el 703 (1088)
T KOG4318|consen 624 QKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLEL 703 (1088)
T ss_pred HHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHH
Confidence 11111111111 11122222222211100 000001111
Q ss_pred ---hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCcc---H
Q 005487 546 ---NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHR---DIEMGEKIAKLLIEKDPDDSST---Y 616 (694)
Q Consensus 546 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~---~ 616 (694)
......|...|.+.|+++.|..+|.++. ..|.+.....++..+.+.. ++-++....+++-+..|..+.+ +
T Consensus 704 t~~lg~~dRLL~sy~~~g~~erA~glwnK~Q-V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~ 782 (1088)
T KOG4318|consen 704 THELGKNDRLLQSYLEEGRIERASGLWNKDQ-VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYY 782 (1088)
T ss_pred HhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc-CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhh
Confidence 0112236668899999999999999998 7788887777777776543 6778888888888877655443 4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 005487 617 IVLSNMYASVKKWDEVRKIRLKMKELGLRK 646 (694)
Q Consensus 617 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 646 (694)
.-.+....+....+.|.+.+.+..++...+
T Consensus 783 ~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~ 812 (1088)
T KOG4318|consen 783 EGYAFFATQTEQKKAAKKCFERLEEQLTVS 812 (1088)
T ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHccCCC
Confidence 444455555566668999999998875433
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.3e-11 Score=114.36 Aligned_cols=445 Identities=11% Similarity=0.107 Sum_probs=237.7
Q ss_pred chhHHHHHHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh-hHHHHHH
Q 005487 140 DVVIASSTAGMYAKCNSFECAVKMFDEMSE---RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSV-TLTTVIS 215 (694)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~ 215 (694)
+...|.....--..++++..|..+|++... .+...|-..+..-.++.....|..+++..... -|... .|-.-+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 344444444444456778888888888765 55666777777777888888888888887763 33332 3444444
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcC--CCCChhHHHHHHHHHHcCCCchHHH
Q 005487 216 SCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQT--VLKSVVAWNALIAGYSSRGDSKSCV 293 (694)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~ 293 (694)
.--..|+...|.++|++-.+. .|+...+.+.++.-.+-...+.|+.++++. ..|++.+|......-.+.|....+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 444567788888888877664 677778888888777777888888888763 4577777777777777777777777
Q ss_pred HHHHHHHHCCCCCCHH----HHHHHHHHhhccCChhhhHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHhc
Q 005487 294 KLFWRMNEEGIKPTLT----TISSVLMSCSRSGQLKHGKVMHGYIIRNKIQG-DVFINSSLIDLYFKCGRVSSAENVFEK 368 (694)
Q Consensus 294 ~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 368 (694)
.+|....+. -.|.. .|.+....-.+...++.|.-++....+.-++. ....|..+...--+-|+........-.
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 777776654 11121 22222222223344555555555555443221 122333333322233332222111100
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCCh-hHH
Q 005487 369 MSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNE-IVM 447 (694)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 447 (694)
- -.--|+.+++.+ +-|-.+|--.+..-...|+.+...++|+.++..-.+... ..|
T Consensus 306 K-----------------------Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W 361 (677)
T KOG1915|consen 306 K-----------------------RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW 361 (677)
T ss_pred h-----------------------hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence 0 000122222221 334445555555555555555555555555443222111 111
Q ss_pred HHHHHHH--------HhcCChHHHHHHHhhCCC--CCh-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 005487 448 GALLDMY--------AKCGAVDEAFKVFNELPE--RDL-V----SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSIT 512 (694)
Q Consensus 448 ~~l~~~~--------~~~g~~~~A~~~~~~~~~--~~~-~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 512 (694)
...+..+ ....+.+.+.++|+.+.+ |.. + .|........++.+...|.+++...+. ..|...+
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~Kl 439 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKL 439 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhH
Confidence 1111111 234555555555555444 221 1 233333444455566666666655553 3555556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHH
Q 005487 513 FLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE----DAGLLSTLFS 587 (694)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~ 587 (694)
|...+..-.+.+.+|....++++.+ ...|. ..+|...+..-...|+.|.|..+|+-+. .+| ....|...+.
T Consensus 440 Fk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi-~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 440 FKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAI-SQPALDMPELLWKAYID 515 (677)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh-cCcccccHHHHHHHhhh
Confidence 6666655555666666666666665 33343 3355555555556666666666666555 223 1234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 005487 588 ACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSN 621 (694)
Q Consensus 588 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 621 (694)
.-...|.+++|..+++++++..+... +|...+.
T Consensus 516 FEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 55556666666666666666555332 4544444
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.9e-12 Score=120.26 Aligned_cols=418 Identities=14% Similarity=0.118 Sum_probs=198.8
Q ss_pred hcCChHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHH
Q 005487 254 KCGCLEMAREVFEQTVL---KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVM 330 (694)
Q Consensus 254 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 330 (694)
..+++..|+.+|+.... .+...|-..+..-.++..+..|..++++....=...| ..|..-+..-...|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 34444555555544332 2344444445555555555555555555444311111 1222222222344555555555
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005487 331 HGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMS--KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPD 408 (694)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 408 (694)
|+.-.+. .|+...+.+.++.-.+-...+.|..+++... .|++.+|-.....--++|+...+..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 5544332 4555555555555555555555555555433 355555555555555555555555555554442 111
Q ss_pred HHHHHHHHHHH----cccCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHH--------hhCCC---
Q 005487 409 AVTFTSVLPAC----SQLAALEKGKEIHNHIIESKLET-NEIVMGALLDMYAKCGAVDEAFKVF--------NELPE--- 472 (694)
Q Consensus 409 ~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~--- 472 (694)
...-..+..++ .....++.|.-+|+..+++-... ....|..+...--+-|+.....+.. +...+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22122222222 23445555555555555432111 1223333332222333332222211 11112
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHH---HccCCHHHHHHHHHHhHHhcCC
Q 005487 473 RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS-------ITFLALLSAC---SHAGWVDEGGYYFNLMISEYNI 542 (694)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~ 542 (694)
-|-.+|--.++.....|+.+...++|++++.. ++|-. ..|..+=.+| ....+.+.+.++++..+ .+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l---~l 395 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL---DL 395 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hh
Confidence 13335555555555556666666666666654 34422 1111111111 23455666666666655 23
Q ss_pred CCCh-----HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHH
Q 005487 543 QPRN-----EHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYI 617 (694)
Q Consensus 543 ~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 617 (694)
-|.. ..|...+....++.++..|.+++-.+...-|...++...+..-.+.++++....++++-++-.|.+..+|.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 3431 12333344445566666666666666655566666666666666666666666666666666666666666
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHH
Q 005487 618 VLSNMYASVKKWDEVRKIRLKMKELGLRKNPGCSWIEIGDRIQPFFAEDKFYPQADMVYECLAILAG 684 (694)
Q Consensus 618 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (694)
..+.+-...|+++.|..+|+.+.++...-.|..-|-. ...|-...+-+..++.+|++|.+.++
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka----YIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKA----YIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH----hhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 6666666666666666666666555443333322221 11233333455666666666655544
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=2.8e-13 Score=126.12 Aligned_cols=415 Identities=11% Similarity=0.048 Sum_probs=260.6
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHH-HHHHHhhHhcCChHHHHHHHhcCCC----CC----hhHHHHHHHHHHcCCCchH
Q 005487 221 MDLDRGKEIHKEFIKDGFVSDSYIS-SALVDMYGKCGCLEMAREVFEQTVL----KS----VVAWNALIAGYSSRGDSKS 291 (694)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~~~~~~ 291 (694)
....+|...++-+++....|+.... ..+.+.+.+...+.+|+++++-... .+ +...+.+...+.+.|+++.
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3445556666666655555554332 2344555666666666666543321 11 1223333445666677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCC------------chhHHHHH-----HHHHH
Q 005487 292 CVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQG------------DVFINSSL-----IDLYF 354 (694)
Q Consensus 292 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l-----~~~~~ 354 (694)
|+..|+...+. .|+..+-..++-.+.-.|+.++..+.|..+......+ +....+.- +.-.-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 77777666654 4666555555555556666666666666665432222 22222211 11111
Q ss_pred hcC--CHHHHHHHHhcCC----CCChh-------------HHH--------HHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005487 355 KCG--RVSSAENVFEKMS----KTDVV-------------YWN--------VMISGYVTVGDYFKALAIYSDMKEVGAKP 407 (694)
Q Consensus 355 ~~~--~~~~A~~~~~~~~----~~~~~-------------~~~--------~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 407 (694)
+.+ +.++++-.-.++. .|+.. .+. .-...+.++|+++.|+++++-+.+..-+.
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 111 1222222111221 22210 010 11234778999999999999887754333
Q ss_pred CHHHHHHH--HHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHH---H
Q 005487 408 DAVTFTSV--LPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSM---I 482 (694)
Q Consensus 408 ~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~ 482 (694)
-...-+.| +.-.-...++..|.++-+..+..+ ..+......-...-...|+++.|.+.|.+....|...-.+| .
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig 531 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG 531 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 22222222 222222446777777766665433 22333333333344567999999999999998776644443 4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCH
Q 005487 483 AAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRL 562 (694)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 562 (694)
-.+-..|+.++|++.|-++... +..+...+..+...|....+...|++++.+... -++.|+..+..|++.|-+.|+.
T Consensus 532 lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccch
Confidence 4577889999999999888764 355778888899999999999999999988762 3444578999999999999999
Q ss_pred HHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 563 QEAYGILQSTPEI-REDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 563 ~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
.+|.+..-..-+. +.+..+..-++..|....=.++|+.+++++--+.|+....-..++.++.+.|++.+|.++++..-.
T Consensus 609 sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 609 SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999887665554 445666666677777777889999999999989997766666677788889999999999987653
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=2.7e-10 Score=111.43 Aligned_cols=198 Identities=8% Similarity=0.096 Sum_probs=116.3
Q ss_pred hhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhC----CC-CCchhhHHHHHHHHHccCChh
Q 005487 13 CTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTI----DN-PLDLSLWNGLMASYTKNYMYI 87 (694)
Q Consensus 13 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~ 87 (694)
|..+..+.+.+.+|++.+-.= +.=+.++...+....++|++......|+.. +- .... .|...+....+.+-++
T Consensus 78 ~~T~~~~~~vn~c~er~lv~m-HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~r-IW~lyl~Fv~~~~lPe 155 (835)
T KOG2047|consen 78 CPTDPAYESVNNCFERCLVFM-HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDR-IWDLYLKFVESHGLPE 155 (835)
T ss_pred CCCChHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhcc-chHHHHHHHHhCCChH
Confidence 344556666677777665432 344566777777777777777777777764 21 1222 5666777667777777
Q ss_pred HHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHc------CCCchhHHHHHHHhhhcCCC---hH
Q 005487 88 TALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTG------FLLDVVIASSTAGMYAKCNS---FE 158 (694)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~ 158 (694)
-++.+|+..++. .|. .-...+..++..++.++|.+.+..++... .+.+...|.-+....++.-+ --
T Consensus 156 ts~rvyrRYLk~---~P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl 230 (835)
T KOG2047|consen 156 TSIRVYRRYLKV---APE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL 230 (835)
T ss_pred HHHHHHHHHHhc---CHH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc
Confidence 777777777654 222 25555666667777777777777665432 12334445544444443321 11
Q ss_pred HHHHHhccCCC--CC--cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 005487 159 CAVKMFDEMSE--RD--VASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCAR 219 (694)
Q Consensus 159 ~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 219 (694)
....+++.+.. +| ...|.+|...|.+.|.+++|.++|++..+. ..+...|..+..+|+.
T Consensus 231 nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 231 NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 12223333322 22 235777788888888888888888777654 3444456666666654
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-11 Score=115.55 Aligned_cols=328 Identities=11% Similarity=0.043 Sum_probs=223.9
Q ss_pred CCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHHHHHHH
Q 005487 305 KPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDV-VYWNVMISG 383 (694)
Q Consensus 305 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~ 383 (694)
.-|...+..........|....|...+...+.. -+..|.+.+....-..+.+.+..+...+...+. ..--.+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 334433333334445556666666666554432 122333333333333333333333333332211 111223445
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCChH
Q 005487 384 YVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE--TNEIVMGALLDMYAKCGAVD 461 (694)
Q Consensus 384 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 461 (694)
+......+++..-.......|.+.+...-+....+.....|+++|+.+|+++.+.++- .+..+|..++.+-..+..+.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5555677777777777777776655555555555666788888999999888876421 24556665553322222221
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 005487 462 EAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD-SITFLALLSACSHAGWVDEGGYYFNLMISEY 540 (694)
Q Consensus 462 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 540 (694)
---...-.+.+--+.|.-.+..-|.-.++.++|..+|++..+. .|. ...|..+..-|....+...|+..++.++
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--- 391 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--- 391 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---
Confidence 1111111222223345555667778888999999999999996 455 5677777889999999999999999998
Q ss_pred CCCC-ChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHH
Q 005487 541 NIQP-RNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIV 618 (694)
Q Consensus 541 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 618 (694)
.+.| |-..|..|+++|.-.+.+.-|+-+|+++.+..| |+..|..++..|.+.++.++|+..+.+++..+..+..++..
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 5566 466999999999999999999999999999777 57899999999999999999999999999999888899999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHh
Q 005487 619 LSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 619 l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
|+.+|.+.++.++|...+++-.+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.9e-11 Score=111.50 Aligned_cols=360 Identities=15% Similarity=0.139 Sum_probs=245.5
Q ss_pred CCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH--HHHH
Q 005487 239 VSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTIS--SVLM 316 (694)
Q Consensus 239 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~ 316 (694)
..|...+-.....+...|....|+..|......-+..|.+.+....-..+.+.+.. +.. |.+.|...+. .+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHH
Confidence 44444444445556677778888888877665545555444433222222222222 111 2222222211 2334
Q ss_pred HhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhcCCh
Q 005487 317 SCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDV------VYWNVMISGYVTVGDY 390 (694)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 390 (694)
++......+.+..-.+.....|++.+...-+....+.-...++++|+.+|+++.+.|+ .+|..++ |++..+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 4555567777777777777778777777777777777788888899999888876544 4555544 3333222
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 005487 391 FKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNEL 470 (694)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (694)
. +..+-+-.-.--+-.+.|...+.+-|+-.++.++|..+|++.++.+ +.....|+.++.-|...++...|.+.++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 2222221111113345566777777888889999999999998876 456778888999999999999999999988
Q ss_pred CC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChH
Q 005487 471 PE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNE 547 (694)
Q Consensus 471 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 547 (694)
.+ .|-..|..|.++|...+.+.-|+-+|++..... +.|+..+..|..+|.+.++.++|++.|.....- + +.+..
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~ 467 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGS 467 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchH
Confidence 77 566789999999999999999999999999852 345789999999999999999999999998832 2 33557
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPE-------IREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
.+..|+++|.+.++.++|...+++..+ ..|.. ....-|...+.+.+++++|.....++..-+|.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 888999999999999999999987554 22221 22223455567789999999988888766544
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=9.3e-13 Score=132.37 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=186.1
Q ss_pred cCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHcccCChHHHHH
Q 005487 356 CGRVSSAENVFEKMSKT--DVV-YWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFT--SVLPACSQLAALEKGKE 430 (694)
Q Consensus 356 ~~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 430 (694)
.|+++.|++.+....+. ++. .+........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777766655432 222 2333334446778888888888777764 44443222 22456677788888888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChH--------HHHHHHHHHHhcCCHHHHHHHHH
Q 005487 431 IHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLV--------SWTSMIAAYGSHGRALEALKLFG 499 (694)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--------~~~~l~~~~~~~~~~~~A~~~~~ 499 (694)
.++.+.+.. |.++.....+..+|.+.|++++|.+++..+.+ .+.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888777765 44566777777888888888888877777765 1111 23333444444455666666777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-
Q 005487 500 EMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED- 578 (694)
Q Consensus 500 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 578 (694)
.+... .+.++.....+...+...|+.++|...+++..+ ..|++.... .......++.+++++.+++..+..|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66544 244677777888888888888888888888873 345554332 23333458888888888887776665
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 579 AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 579 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
+..+..++..|...+++++|.+.++++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567788888888888888888888888888864 4566788888888888888888886543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=9.2e-14 Score=136.36 Aligned_cols=277 Identities=15% Similarity=0.110 Sum_probs=218.7
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHcccCChHHHHHH-
Q 005487 358 RVSSAENVFEKMSK--T-DVVYWNVMISGYVTVGDYFKALAIYSDMKEVGA--KPDAVTFTSVLPACSQLAALEKGKEI- 431 (694)
Q Consensus 358 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~- 431 (694)
+..+|...|..++. . .......+..+|...+++++|.++|+.+.+... .-+...|.+.+..+-+ +-+...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45678888887553 2 334556778889999999999999999887521 1245667776654321 112222
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005487 432 HNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERD---LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARP 508 (694)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 508 (694)
-+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++...-| ..+|+.+..=+.....+|.|...|+..+.- .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 23333333 6678999999999999999999999999998844 457888888888889999999999998874 44
Q ss_pred C-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHH
Q 005487 509 D-SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNE-HYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTL 585 (694)
Q Consensus 509 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 585 (694)
. -..|..+...|.++++++.|.-.|+++. .+.|... ....++..+.+.|+.|+|+.+++++...+| ++..-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 4677777889999999999999999998 7788744 567788999999999999999999887666 45555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 586 FSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 586 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
+..+...+++++|...++++.++-|++..++..+|.+|.+.|+.+.|+.-|.-+.+..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 77788889999999999999999999999999999999999999999999988876554
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.4e-13 Score=133.49 Aligned_cols=249 Identities=14% Similarity=0.098 Sum_probs=199.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCChHHHHHH
Q 005487 389 DYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE--TNEIVMGALLDMYAKCGAVDEAFKV 466 (694)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 466 (694)
+..+|+..|.++... +.........+..+|...++++++..+|+.+.+...- -+..+|...+--+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999985544 3444566677888999999999999999999775311 2455565554322211111111111
Q ss_pred HhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 005487 467 FNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARP-DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR 545 (694)
Q Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 545 (694)
+-......+.+|-++...|.-+++.+.|++.|++.++. .| ...+|..+..-+.....+|.|...|+.++ ++.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 11222356789999999999999999999999999995 56 47888888888999999999999999998 66666
Q ss_pred hH-HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 005487 546 NE-HYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMY 623 (694)
Q Consensus 546 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 623 (694)
.. .|.-++-.|.++++++.|.-.|+++.++.|. .++...++..+.+.|+.++|+.++++++.++|.|+-.-+.-+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 43 7778899999999999999999999998886 456778888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhCC
Q 005487 624 ASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 624 ~~~g~~~~A~~~~~~~~~~~ 643 (694)
...+++++|+..++++++.-
T Consensus 568 ~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELV 587 (638)
T ss_pred HhhcchHHHHHHHHHHHHhC
Confidence 99999999999999998644
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=1.1e-11 Score=125.23 Aligned_cols=512 Identities=12% Similarity=0.072 Sum_probs=274.8
Q ss_pred HHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCc
Q 005487 93 FDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDV 172 (694)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 172 (694)
+-.+... |+.|+..||..++..|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. +|.+
T Consensus 13 la~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 13 LALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 3344444 66777777777777777777776666 6666666666666666666666666666655544 5566
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHH-HH-------hCC-----------------CCCChhhHHHHHHHHhccCChhHHH
Q 005487 173 ASWNTVISCYYQDGQAEKALELFKK-MR-------GSG-----------------FQPNSVTLTTVISSCARLMDLDRGK 227 (694)
Q Consensus 173 ~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~~-----------------~~~~~~~~~~ll~~~~~~~~~~~a~ 227 (694)
.+|..|..+|.+.||... ++..++ |. ..| .-||..+ ++......|-++.+.
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqll 159 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLL 159 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHH
Confidence 677777777777766543 121111 11 112 1222221 111112222333333
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHhh-HhcCChHHHHHHHhcCCC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 005487 228 EIHKEFIKDGFVSDSYISSALVDMY-GKCGCLEMAREVFEQTVL-KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIK 305 (694)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 305 (694)
+++..+...... .+... .++-+ .....+++-..+-+.... +++.+|.+++.+-..+|+.+.|..++..|++.|.+
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 333222111000 01111 12222 222344555555555444 78999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 005487 306 PTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYV 385 (694)
Q Consensus 306 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 385 (694)
.+.+-|..++-+ .++...++.++..|...|+.|+..|+.-.+..+...|....+.+. .+....+++-+..-+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAA 308 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHH
Confidence 999988888866 888899999999999999999999999888887775553322222 122222222222222
Q ss_pred hcC-----ChH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCC---CChhHHHHHHH
Q 005487 386 TVG-----DYF-----KALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE---TNEIVMGALLD 452 (694)
Q Consensus 386 ~~~-----~~~-----~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~ 452 (694)
-.| +.+ -....+++..-.|.......|...... ...|.-+...++-..+...... .++..+..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 223 111 122222222223433333333332222 2256666666665555322111 12333333333
Q ss_pred HHHhcCChHHHHHHHhhCCCCChH-HHH---------------HHHHHHHhcCCHHHHHHHHHHHHHcC----CCC----
Q 005487 453 MYAKCGAVDEAFKVFNELPERDLV-SWT---------------SMIAAYGSHGRALEALKLFGEMQQSN----ARP---- 508 (694)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~---------------~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p---- 508 (694)
-|. .+...+... .++ .+.....+ -+...+++-+..+.... ..|
T Consensus 388 qyF------------rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 388 QYF------------RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHH------------HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhh
Confidence 332 222221111 000 01111111 12222222221111110 111
Q ss_pred ---CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC----CCCCHHH
Q 005487 509 ---DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE----IREDAGL 581 (694)
Q Consensus 509 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~ 581 (694)
=...-+.++..|...-+..++...-+... ..-+ +..|..|++.+....+.+.|..+.++... ..-+...
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 11233444445555555555554444333 1111 25677888888888889999988888763 2223445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 005487 582 LSTLFSACRLHRDIEMGEKIAKLLIEKD---PDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRK 646 (694)
Q Consensus 582 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 646 (694)
+..+.....+.+....+..+++...+.- |.-......+.......|+.+.-.+..+-+...|+..
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 6667777778888888888877766532 3233445555666667788888888888888777755
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.1e-12 Score=121.64 Aligned_cols=252 Identities=15% Similarity=0.081 Sum_probs=131.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005487 383 GYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDE 462 (694)
Q Consensus 383 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (694)
-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .|..+.+|-+++--|...|+..+
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 3334445555555555544432 223333333333444444444444443344333 24445555555555555566666
Q ss_pred HHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 005487 463 AFKVFNELPERD---LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISE 539 (694)
Q Consensus 463 A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 539 (694)
|.+.|.+...-| ...|-..+.+|.-.|..++|+..+..+.+. ++-....+..+.--|.+.+++.-|.++|.++.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~-- 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL-- 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH--
Confidence 666665554422 235666666666666666666666555543 12222333334444555666666666666655
Q ss_pred cCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCC----CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 540 YNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPE----IRE----DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 540 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
++.|+ +..+..++-.....+.+.+|..+|+.... ..+ -..+++.++.++++.+.+++|+..+++++.+.|
T Consensus 408 -ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 -AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred -hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 44444 33455555555555666666666655432 111 123455566666666666666666666666666
Q ss_pred CCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 611 DDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 611 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.++.+|..+|-+|...|+++.|.+.|.+..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 666666666666666666666666666543
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.8e-12 Score=130.39 Aligned_cols=288 Identities=13% Similarity=0.057 Sum_probs=176.8
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005487 286 RGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENV 365 (694)
Q Consensus 286 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 365 (694)
.|+++.|.+.+....+.+-.| ...+.....+....|+++.+...+..+.+................+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456666655555443321111 1122222333345555555555555554432221111111224455555666666665
Q ss_pred HhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCC
Q 005487 366 FEKMSK---TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLET 442 (694)
Q Consensus 366 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (694)
++.+.+ .++.....+...|.+.|++++|..++..+.+.+..++ .....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH--------------------------
Confidence 555542 2344555555666666666666666666665543221 1111000
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 005487 443 NEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSA 519 (694)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 519 (694)
...|..++.......+.+...++++.++. .++.....+...+...|+.++|..++++..+. +|++... ++.+
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~ 303 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIP 303 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHh
Confidence 01222233333344456666777777765 56778888889999999999999999988874 4555322 2334
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005487 520 CSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMG 598 (694)
Q Consensus 520 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 598 (694)
....++.+++.+..+...++ .|+ +..+..++..+.+.|++++|.+.|+++.+..|+...+..+...+...|+.++|
T Consensus 304 ~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44568899999999988843 344 55677889999999999999999999888889988888899999999999999
Q ss_pred HHHHHHHHhcC
Q 005487 599 EKIAKLLIEKD 609 (694)
Q Consensus 599 ~~~~~~~~~~~ 609 (694)
.+++++.+.+.
T Consensus 381 ~~~~~~~l~~~ 391 (398)
T PRK10747 381 AAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHhhh
Confidence 99999988754
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=8.3e-11 Score=117.67 Aligned_cols=408 Identities=16% Similarity=0.119 Sum_probs=264.6
Q ss_pred CCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 005487 237 GFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLK---SVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISS 313 (694)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 313 (694)
.+.-+..+|..+.-+....|+++.+-+.|++...- ....|+.+...+...|.-..|..+++.-......|+..+...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35567788888888889999999999999886543 456788899999999999999999988766543354444333
Q ss_pred HH-HHhh-ccCChhhhHHHHHHHHHhc----CCCchhHHHHHHHHHHhc-----------CCHHHHHHHHhcCCC---CC
Q 005487 314 VL-MSCS-RSGQLKHGKVMHGYIIRNK----IQGDVFINSSLIDLYFKC-----------GRVSSAENVFEKMSK---TD 373 (694)
Q Consensus 314 ll-~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~---~~ 373 (694)
+. ..|. +.+..+++..+-..+.... -...+..+..+.-+|... ....++...+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33 3333 4567777777666665521 112333444444444321 123445556665532 33
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHH-hCCCCChhHHHHHHH
Q 005487 374 VVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIE-SKLETNEIVMGALLD 452 (694)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 452 (694)
+...-.+.--|+..++.+.|+...++..+.+-..+...|..+.-.+...+++..|..+.+.... .|.. ......-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hhhchhhhh
Confidence 3333334445677888999999999998886677888888888888888999999988887654 2211 111111111
Q ss_pred HHHhcCChHHHHHHHhhCCC--------------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005487 453 MYAKCGAVDEAFKVFNELPE--------------------------------RDLVSWTSMIAAYGSHGRALEALKLFGE 500 (694)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (694)
.-..-++.++|+.....+.. ..+.++..+.......+....-...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 12223444444433222111 0111222222111111100000000
Q ss_pred HHHcCCCCCH--------hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHh
Q 005487 501 MQQSNARPDS--------ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQS 571 (694)
Q Consensus 501 ~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 571 (694)
+...-+.|.+ ..+......+...++.++|...+.++. ++.|- ...|...+..+...|++++|.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1111112222 223444557788899999998888876 44454 56788888999999999999999999
Q ss_pred CCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCC
Q 005487 572 TPEIRED-AGLLSTLFSACRLHRDIEMGEK--IAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNP 648 (694)
Q Consensus 572 ~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 648 (694)
+...+|+ ......++..+...|+-..|.. ++..+++.+|.++.+|+.||.++.+.|+.+.|.+.|+...+... ..|
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~P 788 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNP 788 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCC
Confidence 8888887 5688899999999998777777 99999999999999999999999999999999999999876553 445
Q ss_pred ceeEE
Q 005487 649 GCSWI 653 (694)
Q Consensus 649 ~~~~~ 653 (694)
.-+|.
T Consensus 789 V~pFs 793 (799)
T KOG4162|consen 789 VLPFS 793 (799)
T ss_pred ccccc
Confidence 44444
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=5.7e-12 Score=127.51 Aligned_cols=279 Identities=11% Similarity=0.044 Sum_probs=154.1
Q ss_pred hcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHcccCChHHHH
Q 005487 355 KCGRVSSAENVFEKMSK--TD-VVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAV--TFTSVLPACSQLAALEKGK 429 (694)
Q Consensus 355 ~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~ 429 (694)
..|+++.|.+.+....+ ++ ...+-.......+.|+++.|...+.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34555555555554432 22 122233344455556666666666665543 23321 2222344555566666666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 005487 430 EIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWT----SMIAAYGSHGRALEALKLFGEMQ 502 (694)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~ 502 (694)
..++.+.+.. |-+..+...+..++...|++++|.+.+..+.+ .+...+. .........+..+.+.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666554 33445555666666666666666666665553 2222221 11111122222233333444444
Q ss_pred HcCC---CCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHH---HHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 005487 503 QSNA---RPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEH---YSCLIDLLGRAGRLQEAYGILQSTPEIR 576 (694)
Q Consensus 503 ~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 576 (694)
+... +.+...+..+...+...|+.++|...+++..++ .|+... ...........++.+.+.+.+++..+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 3311 125566666667777777777777777777632 344331 1111222233466777777777766655
Q ss_pred CC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 577 ED-A--GLLSTLFSACRLHRDIEMGEKIAK--LLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 577 p~-~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
|+ + ....++++.+.+.|++++|.+.++ .+++..|++. .+..++.++.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54 3 456677788888888888888888 4666666543 46688888888888888888887653
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.6e-12 Score=113.96 Aligned_cols=300 Identities=15% Similarity=0.158 Sum_probs=183.6
Q ss_pred CCHHHHHHHHhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHcccCChHH
Q 005487 357 GRVSSAENVFEKMSKTDVV---YWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDA------VTFTSVLPACSQLAALEK 427 (694)
Q Consensus 357 ~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~ 427 (694)
++.++|...|-+|.+.|+. +.-++.+.|.+.|..+.|+++-..+.++ ||. ...-.|..-|...|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3444455555444433332 2233444455555555555555444442 221 112223333444555555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh--------HHHHHHHHHHHhcCCHHHHHHHHH
Q 005487 428 GKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDL--------VSWTSMIAAYGSHGRALEALKLFG 499 (694)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~ 499 (694)
|+.+|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+. ..|-.|...+....+.+.|...+.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555555554422 22233344555666666666666665554443111 134445666666778888888888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH
Q 005487 500 EMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA 579 (694)
Q Consensus 500 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 579 (694)
+..+.+ +.+...-..+.......|+++.|++.|+.+.+. +..--+.+...|..+|...|+.++....+.++.+..+..
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 888763 223344445566778888888888888888733 222225577788888888888888888888877766666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhh---cCChHHHHHHHHHHHhCCCccCCceeEEEEC
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS---VKKWDEVRKIRLKMKELGLRKNPGCSWIEIG 656 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
.....+...-....-.+.|...+.+-+...|.-.. ...|++.... .|.+.+.+..++.|....++..|.+.+..||
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG 361 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG 361 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC
Confidence 66666666555556667777777777777775433 3344444332 3678999999999999999999999999999
Q ss_pred CEEEEEE
Q 005487 657 DRIQPFF 663 (694)
Q Consensus 657 ~~~~~~~ 663 (694)
...+.++
T Consensus 362 F~a~~l~ 368 (389)
T COG2956 362 FTAHTLY 368 (389)
T ss_pred Ccceeee
Confidence 8866653
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2e-11 Score=123.64 Aligned_cols=289 Identities=11% Similarity=0.046 Sum_probs=170.9
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 005487 284 SSRGDSKSCVKLFWRMNEEGIKPTL-TTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSA 362 (694)
Q Consensus 284 ~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 362 (694)
...|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+...+....+....+...+.......+...
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~------ 166 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ------ 166 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC------
Confidence 3567777777777665554 2332 223333444555566666666665554433222222222234444444
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCC
Q 005487 363 ENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLET 442 (694)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (694)
|+++.|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+
T Consensus 167 -------------------------~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 167 -------------------------NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred -------------------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 44555555554444442 1123334444444455555555555555554443222
Q ss_pred ChhH-------HHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 005487 443 NEIV-------MGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSIT 512 (694)
Q Consensus 443 ~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 512 (694)
.... +..++..-......+...+.++..+. .++..+..++..+...|++++|.+.+++..+. .||...
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~ 298 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCccc
Confidence 1111 11111111122234455555665554 47778888899999999999999999999986 344432
Q ss_pred --H-HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHH--hCCCCCCCHHHHHHHHH
Q 005487 513 --F-LALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQ--STPEIREDAGLLSTLFS 587 (694)
Q Consensus 513 --~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~l~~ 587 (694)
+ ..........++.+.+.+.++...+...-.|+......++..+.+.|++++|.+.|+ ...+..|++..+..++.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 1 112223344578888999998888543222322566788999999999999999999 46557898888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 005487 588 ACRLHRDIEMGEKIAKLLIEK 608 (694)
Q Consensus 588 ~~~~~~~~~~A~~~~~~~~~~ 608 (694)
.+...|+.++|.+++++++..
T Consensus 379 ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998654
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=1.4e-14 Score=139.28 Aligned_cols=228 Identities=18% Similarity=0.170 Sum_probs=107.2
Q ss_pred HHHHHHcccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---ChHHHHHHHHHHHhcC
Q 005487 414 SVLPACSQLAALEKGKEIHNHIIESK-LETNEIVMGALLDMYAKCGAVDEAFKVFNELPER---DLVSWTSMIAAYGSHG 489 (694)
Q Consensus 414 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 489 (694)
.+...+...|++++|.++++...... .+.+...|..+.......++++.|...++.+... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55777889999999999997655444 3556677777888888899999999999999873 34466667766 7889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHH
Q 005487 490 RALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGIL 569 (694)
Q Consensus 490 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 569 (694)
++++|.+++++..+. .+++..+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988765 466777888888999999999999999998754344567778899999999999999999999
Q ss_pred HhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 570 QSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 570 ~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
+++.+..|+ ......++..+...|+.+++.++++...+..|+++..+..++.+|...|+.++|+.++++......
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 999987885 678889999999999999999999999999999999999999999999999999999999876443
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=7.4e-11 Score=106.85 Aligned_cols=409 Identities=15% Similarity=0.088 Sum_probs=191.1
Q ss_pred hhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHH
Q 005487 150 MYAKCNSFECAVKMFDEMSE---RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRG 226 (694)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 226 (694)
.+.+.|++++|...+..+.+ ++...+-.|..++.-.|.+.+|..+-....+ ++..-..++....+.++-++.
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHH
Confidence 34455666666665555433 3344444555555555666666555443221 222223333333444554444
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCCh--hHHHH-HHHHHHcCCCchHHHHHHHHHHHCC
Q 005487 227 KEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSV--VAWNA-LIAGYSSRGDSKSCVKLFWRMNEEG 303 (694)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g 303 (694)
..+.+.+.+. ..-..+|..+.-..-.+++|++++.++...++ ...|. +.-+|.+..-++-+.++++-..+.
T Consensus 141 ~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 141 LTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 4444443321 12233344444444567777777777655433 33333 334667777777777777766665
Q ss_pred CCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHhcCCCCChhHHH
Q 005487 304 IKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKC-----GRVSSAENVFEKMSKTDVVYWN 378 (694)
Q Consensus 304 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~ 378 (694)
.+.+....+.......+.=+-..|+.-...+.+.+...-+ .+.-+++. +.-+.|++++-.+.+.-+..-.
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 2222233333332223322223333333333333211111 12222222 2345566655554443344444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005487 379 VMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCG 458 (694)
Q Consensus 379 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (694)
.++-.|.+.+++.+|..+.+++.- ..|-......+..+ ++.+-.....
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a------------------------------alGQe~gSre 337 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA------------------------------ALGQETGSRE 337 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH------------------------------HhhhhcCcHH
Confidence 555667777777777777665431 12222211111111 1111111112
Q ss_pred ChHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 005487 459 AVDEAFKVFNELPE-----RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYF 533 (694)
Q Consensus 459 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (694)
...-|...|+..-. ..+....++...+.-..++++.+.++..+..- +..|......+.++.+..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 23333333332221 12222333444444445566666655555543 2333333344556666667777777666
Q ss_pred HHhHHhcCCC-CChHHH-HHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 534 NLMISEYNIQ-PRNEHY-SCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 534 ~~~~~~~~~~-p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
-.+. +.+ .+..+| ..|+++|.+.++++-|+.++-++......-..+..++.-|.+.+.+=-|-..|..+-.++|
T Consensus 417 ~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 6554 211 122233 3456666777777777766665541111122334445556666666666666666555555
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.6e-11 Score=114.59 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=178.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 005487 384 YVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEA 463 (694)
Q Consensus 384 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (694)
+.-.|+.-.|..-|+..+.....++.. |..+...|....+.++....|....+.+ +-++.+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445688888888888888875444332 7777888999999999999999998877 55777888888888889999999
Q ss_pred HHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 005487 464 FKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEY 540 (694)
Q Consensus 464 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 540 (694)
..-|++... .+...|-.+..+..+.+++++++..|++.++. ++..+..|+.....+..+++++.|.+.|+...
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai--- 489 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI--- 489 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---
Confidence 999999887 34457777888888999999999999999987 45558999999999999999999999999987
Q ss_pred CCCCC-------hH--HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 541 NIQPR-------NE--HYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 541 ~~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
.+.|+ +. +...++..-.+ +++..|..+++++.+.+|.. ..+..++....+.|+.++|+++|+++..+..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444 22 22233333333 89999999999999988875 5788899999999999999999999986643
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.5e-10 Score=104.01 Aligned_cols=288 Identities=12% Similarity=0.049 Sum_probs=209.6
Q ss_pred cCChhhhHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH---HHHHHHHHhcCChHHHHHH
Q 005487 321 SGQLKHGKVMHGYIIRN-KIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYW---NVMISGYVTVGDYFKALAI 396 (694)
Q Consensus 321 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~ 396 (694)
.++-..+...+-.+... -++.+......+..++...|+..+|+..|++....|+.+. ......+.+.|+++....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 33333444444333333 3567888888999999999999999999998776554432 2334445677888887777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---C
Q 005487 397 YSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---R 473 (694)
Q Consensus 397 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 473 (694)
...+.... .-....|..-+......++++.|..+-++.++.+ +.+...+-.-..++...|++++|.-.|+.... -
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 77766532 1222223333344456778888888888777655 33455555556778888999999999987665 3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHH-ccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 005487 474 DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALL-SACS-HAGWVDEGGYYFNLMISEYNIQPR-NEHYS 550 (694)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 550 (694)
+...|..|+.+|...|++.+|..+-+..... ++.+..++..+. ..|. ....-++|.+++++.. .+.|+ .....
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVN 442 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHH
Confidence 5678999999999999999999888887765 445566666553 3333 3344678889988877 56777 55677
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 005487 551 CLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 551 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
.++..+...|+.++++.++++.....||......++......+.+.+|...|..++.++|++..
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 8889999999999999999998888899999999999999999999999999999999998633
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.1e-10 Score=108.01 Aligned_cols=289 Identities=14% Similarity=0.103 Sum_probs=199.5
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005487 285 SRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAEN 364 (694)
Q Consensus 285 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 364 (694)
-.|++.+|.+++.+-.+.+-.| ...|..-..+....|+.+.+..++.++.+....++..+.-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3578888888888876665444 344556666777788888888888888777556677777777788888888888887
Q ss_pred HHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCC
Q 005487 365 VFEKMS---KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLE 441 (694)
Q Consensus 365 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (694)
-++++. ..++........+|.+.|++.....++.+|.+.|.-.+...-.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 777654 4566777788888888888888888888888877554432110
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 005487 442 TNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLS 518 (694)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 518 (694)
....++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ....-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHH
Confidence 0112233333333333344444455565554 4566666777778888888888888888888765555 22233
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005487 519 ACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMG 598 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 598 (694)
.+.+-++...-++..+...+.++..| ..+..|+..|.+.+.+.+|...|+.+.+..|+...+..++.++.+.|+...|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 45666777777777777775544444 5667778888888888888888887777777777777788888888888888
Q ss_pred HHHHHHHHhc
Q 005487 599 EKIAKLLIEK 608 (694)
Q Consensus 599 ~~~~~~~~~~ 608 (694)
.++.+.++..
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 8777777643
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=1.7e-08 Score=99.10 Aligned_cols=538 Identities=12% Similarity=0.109 Sum_probs=322.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhh
Q 005487 72 LWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMY 151 (694)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (694)
.|-.-+....++|+.......|+..+..-++......|...+......+-++.+..++++.++.. +....-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 67777777788888888888888887764566666788888888888888888888888887642 33456667777
Q ss_pred hcCCChHHHHHHhccCCCCC----------cccHHHHHHHHHhCCChhHH---HHHHHHHHhCCCCCChh--hHHHHHHH
Q 005487 152 AKCNSFECAVKMFDEMSERD----------VASWNTVISCYYQDGQAEKA---LELFKKMRGSGFQPNSV--TLTTVISS 216 (694)
Q Consensus 152 ~~~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~~~~~~~~--~~~~ll~~ 216 (694)
++.+++++|.+.+..+...+ -..|..+-...+++-+.-.. ..++..+.. .-+|.. .|.+|..-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 88888888888887776422 22355554444444332222 222333322 134433 46666666
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHH-h--c-CCCCChhHHHHHHHHHHcCCCchHH
Q 005487 217 CARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVF-E--Q-TVLKSVVAWNALIAGYSSRGDSKSC 292 (694)
Q Consensus 217 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~--~-~~~~~~~~~~~li~~~~~~~~~~~a 292 (694)
|.+.|.+++|..++++.+.. ..+..-|..+-+.|+....---+..+= . + ..+.+.. +++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~-------------dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV-------------DLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh-------------hHHHH
Confidence 66777777777776666554 223333344444443321111111100 0 0 0000111 12222
Q ss_pred HHHHHHHHHCC-----------CCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhc-CC----CchhHHHHHHHHHHhc
Q 005487 293 VKLFWRMNEEG-----------IKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNK-IQ----GDVFINSSLIDLYFKC 356 (694)
Q Consensus 293 ~~~~~~m~~~g-----------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~ 356 (694)
+.-|+.+...+ -+-+..+|..-+ -...|+..+....+.++++.- +. .-...+..+...|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 33333333321 112223332222 233456666667777666542 11 1234678899999999
Q ss_pred CCHHHHHHHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----------------HHHH
Q 005487 357 GRVSSAENVFEKMSKTDV-------VYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPD-----------------AVTF 412 (694)
Q Consensus 357 ~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------------~~~~ 412 (694)
|+++.|..+|++..+-+- .+|......-.+..+++.|+++++......-.|. ...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 999999999999876433 3455555556678888999988877665321111 1123
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CChH-HHHHHHHHHHh
Q 005487 413 TSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE----RDLV-SWTSMIAAYGS 487 (694)
Q Consensus 413 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~ 487 (694)
...+..-...|-++....+|+.+++..+. ++.+.......+..+.-++++.+++++-.. |+.. .|+..+.-+.+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 44444455667888888999999887654 344444455556777889999999998776 5554 56665554433
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH--HHHccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHhhhcC
Q 005487 488 ---HGRALEALKLFGEMQQSNARPDSITFLALLS--ACSHAGWVDEGGYYFNLMISEYNIQPR--NEHYSCLIDLLGRAG 560 (694)
Q Consensus 488 ---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 560 (694)
....+.|..+|++..+ |.+|...-+..|+. .=.+-|....|..+++++.. ++++. ...|+..+.--...=
T Consensus 560 rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHh
Confidence 2468999999999998 66665433323322 22345888889999999863 44444 335655543322222
Q ss_pred CHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCccHHHHHHHHhhcCChHHHHHH
Q 005487 561 RLQEAYGILQSTPEIREDAGLL---STLFSACRLHRDIEMGEKIAKLLIEKDPD--DSSTYIVLSNMYASVKKWDEVRKI 635 (694)
Q Consensus 561 ~~~~A~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~ 635 (694)
-+-.-..+|+++.+.=|+...- ..++..-.+.|..+.|..++...-+..|+ +...|...-.--.+.|+-+--.+.
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 2334456666666555555432 33444556789999999999988887644 666788888888888984444333
Q ss_pred H
Q 005487 636 R 636 (694)
Q Consensus 636 ~ 636 (694)
+
T Consensus 717 L 717 (835)
T KOG2047|consen 717 L 717 (835)
T ss_pred H
Confidence 3
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1.1e-11 Score=116.68 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=165.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 005487 443 NEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSA 519 (694)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 519 (694)
....+..+...+...|++++|...++.... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888889999999998887665 345678888899999999999999999998864 4456778888889
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005487 520 CSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMG 598 (694)
Q Consensus 520 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A 598 (694)
+...|++++|...++.+............+..++.++...|++++|...++++.+..|+ ...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999843222223457778899999999999999999998876664 56788888899999999999
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 599 EKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 599 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
...++++++..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888999999999999999999998877543
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=3e-10 Score=105.32 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=169.1
Q ss_pred CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHH
Q 005487 185 DGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREV 264 (694)
Q Consensus 185 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 264 (694)
.|+|.+|.++..+-.+.+- -....|.....+..+.|+.+.+-.++.++.+....++..+.-...+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 6888888888887766542 233456666677778888888888888887764456666677777778888888888777
Q ss_pred HhcC---CCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCC
Q 005487 265 FEQT---VLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQG 341 (694)
Q Consensus 265 ~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 341 (694)
++++ ...++.......++|.+.|++.....++..|.+.|.-.++..-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 7654 44567788888888888888888888888888887654432210 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005487 342 DVFINSSLIDLYFKCGRVSSAENVFEKMS---KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPA 418 (694)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 418 (694)
...++..+++-....+..+.-...++..+ +.++..-..++.-+.+.|+.++|.++.++..+.+..|+.. ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 11233444444444444444445555555 3456666667777778888888888888877776555522 2223
Q ss_pred HcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHH
Q 005487 419 CSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDLVSWTSMIAAYGSHGRALEALK 496 (694)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 496 (694)
+.+.++.+.-.+..+...+.. +.++..+..+...|.+.+.|.+|...|+...+ |+..+|+.+..++.+.|++..|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 445555555555544443322 22224444444444444444444444443333 333444444444444444444444
Q ss_pred HHHHH
Q 005487 497 LFGEM 501 (694)
Q Consensus 497 ~~~~~ 501 (694)
..++.
T Consensus 383 ~r~e~ 387 (400)
T COG3071 383 VRREA 387 (400)
T ss_pred HHHHH
Confidence 44433
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6e-10 Score=107.71 Aligned_cols=281 Identities=14% Similarity=0.098 Sum_probs=145.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 005487 278 ALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCG 357 (694)
Q Consensus 278 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (694)
.-.+-+...+++.+..++.+...+. .++....+..=|..+...|+..+-..+-..+++.- +....+|-++.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 3334444555555555555555544 12222233333334444444444333333333332 334555666666666667
Q ss_pred CHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCChHHHHHHHH
Q 005487 358 RVSSAENVFEKMSKTD---VVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDA-VTFTSVLPACSQLAALEKGKEIHN 433 (694)
Q Consensus 358 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 433 (694)
..++|++.|.+...-| ...|-.+...|+-.|..+.|+..+...-+. .|.. -.+.-+.--|.+.++.+.|.++|.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 7777777777655433 346777777777777777777777665543 1111 111112223445555666666665
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 005487 434 HIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITF 513 (694)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 513 (694)
++.... |.|+.+.+.+.-+....+.+.+|..+|+.... ..+..... ..--..++
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e-~~~w~p~~ 458 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNE-KIFWEPTL 458 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhcccc-ccchhHHH
Confidence 555443 33444444444444444555555554443321 00000000 00123456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005487 514 LALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACR 590 (694)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 590 (694)
+.|..+|.+.+.+++|+..+++.+. -.+.+..++..++-.|...|+++.|++.|.++..+.|+..+...++..+.
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 6666666666666666666666652 22334556666666666666666666666666666666655555554433
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.1e-07 Score=96.18 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 005487 474 DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLI 553 (694)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 553 (694)
.+..|..+..+-.+.|...+|++-|-+ ..|+..|..++....+.|.|++-++++..++++ .-.|..++ .|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHH
Confidence 456789999999999998888876643 236778999999999999999999999888744 55665554 678
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHH
Q 005487 554 DLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVR 633 (694)
Q Consensus 554 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 633 (694)
-+|.+.+++.+-.+++ ..|+..-....+.-|...|.++.|.-++... +-|..|+..+...|++..|.
T Consensus 1174 ~AyAkt~rl~elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHhchHHHHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH
Confidence 8999999987765544 4677777788889999999999988887654 35777888888888888887
Q ss_pred HHHHHHH
Q 005487 634 KIRLKMK 640 (694)
Q Consensus 634 ~~~~~~~ 640 (694)
+.-++.-
T Consensus 1241 D~aRKAn 1247 (1666)
T KOG0985|consen 1241 DAARKAN 1247 (1666)
T ss_pred HHhhhcc
Confidence 6665543
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=4.7e-12 Score=113.19 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005487 378 NVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKC 457 (694)
Q Consensus 378 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (694)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+...+..|..++.+-++. +|.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56677777777777777777766654 455556666666666666666666665555443 233333334455555555
Q ss_pred CChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 005487 458 GAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFN 534 (694)
Q Consensus 458 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (694)
++.++|.++|+...+ .++.+...+...|.-.++++-|+.+++++.+.|+ -++..|+.+.-+|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555666666555544 2333344444455555566666666666665552 355555555555555555555555555
Q ss_pred HhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 005487 535 LMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 535 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
++... ...|+ ...++|..+.......||+..|.+.|+-++..+|++..
T Consensus 383 RAlst-at~~~-------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 383 RALST-ATQPG-------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHhh-ccCcc-------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 55421 11222 12345555555555556666666666666666666666
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 615 TYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 615 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
++.+|+-+-.+.|+.++|..++....+
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666666666666666666666655543
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2e-09 Score=104.60 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=117.7
Q ss_pred cCChHHHHHHHhhCCCCC-hHHHHHHHHH-HH-hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 005487 457 CGAVDEAFKVFNELPERD-LVSWTSMIAA-YG-SHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYF 533 (694)
Q Consensus 457 ~g~~~~A~~~~~~~~~~~-~~~~~~l~~~-~~-~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (694)
.+..+.+.++...++... ...+..++.. .. +...+..|.+++...-+....-.......++......|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 355667777777776632 2233344333 22 22347788888888877531112355566666788899999999999
Q ss_pred H--------HhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC-------CCCC-HHHHHHHHHHHHHcCCHHH
Q 005487 534 N--------LMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE-------IRED-AGLLSTLFSACRLHRDIEM 597 (694)
Q Consensus 534 ~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~ 597 (694)
. .+. .+.-.+.+...+...+.+.++.+.|..++.++.. ..+. ...+..++..-.++|+-++
T Consensus 400 ~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 443 2233345556677788888777767776666543 1121 2345555566677899999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 598 GEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 598 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
|...++++++.+|++..+...+..+|.... .+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 999999999999999999999998887764 4556555443
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.6e-10 Score=102.35 Aligned_cols=271 Identities=14% Similarity=0.138 Sum_probs=152.5
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcC-CCc--hhHHHHHHHHHHhcCCHHH
Q 005487 285 SRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKI-QGD--VFINSSLIDLYFKCGRVSS 361 (694)
Q Consensus 285 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~ 361 (694)
-++++++|.++|-+|.+. -+-+..+-.++...|.+.|..+.|.++.+.+.++.- +.+ ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 457888999999888874 222334445666677777777777777777665421 111 1233345556666666666
Q ss_pred HHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHh
Q 005487 362 AENVFEKMSKTD---VVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIES 438 (694)
Q Consensus 362 A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 438 (694)
|+.+|..+...+ ......++..|....+|++|++.-+++.+.|-.+...-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 666666655422 234555666666666666666666666555433322110
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 005487 439 KLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDL---VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLA 515 (694)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 515 (694)
...|..+...+....+.+.|..++.+..+.|+ .+--.+.+.+...|+++.|.+.++...+.+..--+.+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 11233344444445555666666655554222 2233355566666777777777776666532222455666
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005487 516 LLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACR 590 (694)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 590 (694)
|..+|.+.|+.++...++..+. ...+....-..+.+.-....-.+.|...+.+-...+|+...+..++....
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~---~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAM---ETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH---HccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 6667777777777777666665 22344444444445444445556666665555546666666666665543
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=110.68 Aligned_cols=229 Identities=10% Similarity=0.058 Sum_probs=181.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccC
Q 005487 448 GALLDMYAKCGAVDEAFKVFNELPE--RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD-SITFLALLSACSHAG 524 (694)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 524 (694)
+.+..+|.+.|-+.+|.+.|+...+ |.+.+|..|-++|.+..++..|+.++.+..+. .|- ......+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4688999999999999999998776 88889999999999999999999999999986 454 444556677889999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005487 525 WVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIR-EDAGLLSTLFSACRLHRDIEMGEKIAK 603 (694)
Q Consensus 525 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~ 603 (694)
+.++|.++++...+. .+-+++...+++..|.-.+++|-|+.+|+++.+.. .++..+..++..|.-.++++-+...++
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999999843 23346677778888888999999999999988743 467788999999999999999999999
Q ss_pred HHHhcCC--C-CCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHH
Q 005487 604 LLIEKDP--D-DSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNPGCSWIEIGDRIQPFFAEDKFYPQADMVYECLA 680 (694)
Q Consensus 604 ~~~~~~p--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
+++.... + -+.+|++|+.+....|++.-|.+.|+....... +.+.+...+ ..+..+.+...+++.++..-.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~h~ealnNL----avL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--QHGEALNNL----AVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--chHHHHHhH----HHHHhhcCchHHHHHHHHHhh
Confidence 9997653 2 556899999999999999999999997765442 222232222 234455566777777777666
Q ss_pred HHHHHh
Q 005487 681 ILAGHM 686 (694)
Q Consensus 681 ~~~~~~ 686 (694)
.+.-.|
T Consensus 457 s~~P~m 462 (478)
T KOG1129|consen 457 SVMPDM 462 (478)
T ss_pred hhCccc
Confidence 554444
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=1.8e-10 Score=114.91 Aligned_cols=232 Identities=17% Similarity=0.214 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHHh-----CC-CCCh-hHHHHHHHHHHhcCChHHHHHHHhhCCC-------C-
Q 005487 409 AVTFTSVLPACSQLAALEKGKEIHNHIIES-----KL-ETNE-IVMGALLDMYAKCGAVDEAFKVFNELPE-------R- 473 (694)
Q Consensus 409 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 473 (694)
..+...+...|...|+++.|...++..++. |. .|.. ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666778888889999988888887654 21 2222 2334577888899999999999988765 2
Q ss_pred C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHccCCHHHHHHHHHHhHHhcC--
Q 005487 474 D---LVSWTSMIAAYGSHGRALEALKLFGEMQQS-----NA-RPDS-ITFLALLSACSHAGWVDEGGYYFNLMISEYN-- 541 (694)
Q Consensus 474 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 541 (694)
+ ..+++.|..+|.+.|++.+|...+++..+- |. .|.. ..+..+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 236788888999999999988888776532 11 2222 3466666788899999999999998765433
Q ss_pred CCCC----hHHHHHHHHHhhhcCCHHHHHHHHHhCCC------C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005487 542 IQPR----NEHYSCLIDLLGRAGRLQEAYGILQSTPE------I--RE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEK 608 (694)
Q Consensus 542 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 608 (694)
..++ ..++..|+..|...|++++|.++++++.. . .+ ....++.++..|.+.+++.+|.++|..++.+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2233 35789999999999999999999998764 1 12 2456788889999999999999999888754
Q ss_pred ----CCCCC---ccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 609 ----DPDDS---STYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 609 ----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.|+++ .+|.+|+.+|..+|++++|.++.+++.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35554 478899999999999999999988875
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=9.4e-09 Score=103.34 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 005487 477 SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDL 555 (694)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 555 (694)
.|......+...+..++|...+.+..+.. +-....|......+...|.+.+|.+.|.... .+.|+ +....+++.+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 56667778889999999998888888752 3456777777788999999999999999888 67787 5688899999
Q ss_pred hhhcCCHHHHHH--HHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 005487 556 LGRAGRLQEAYG--ILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 556 ~~~~g~~~~A~~--~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
+.+.|+..-|.. ++..+.+.+|+ ...|..++..+...|+.+.|.+.|+.++++.+.+|.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999998777776 99999988875 789999999999999999999999999999987664
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=6.5e-11 Score=101.24 Aligned_cols=163 Identities=14% Similarity=0.133 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 005487 477 SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDL 555 (694)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 555 (694)
+...|...|...|++..|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+++. .+.|+ ..+.+..+..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 44556777888888888888888888763 2235677777777888888888888888877 44555 4577777888
Q ss_pred hhhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHH
Q 005487 556 LGRAGRLQEAYGILQSTPEIRE----DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDE 631 (694)
Q Consensus 556 ~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 631 (694)
++.+|++++|...|+++.. .| -..+|..++.+..+.|+.+.|...++++++.+|+.+.+...++......|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888888888888887763 23 245677777777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCC
Q 005487 632 VRKIRLKMKELGL 644 (694)
Q Consensus 632 A~~~~~~~~~~~~ 644 (694)
|.-++++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 8888887776665
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.2e-09 Score=97.45 Aligned_cols=451 Identities=12% Similarity=0.089 Sum_probs=217.2
Q ss_pred HHHHhcCCChhHHHHHHhhCCCCC--chh-hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCC
Q 005487 45 INLYFSCQNYDYAMLVFKTIDNPL--DLS-LWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGS 121 (694)
Q Consensus 45 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 121 (694)
++=+....++..|+.+++--..-+ ..+ .--.+.-++.+-|++++|+..|..+.++ ..++...+..+.-...-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHH
Confidence 344445666777777665543211 110 2223445556777777777777776665 44555555555554445566
Q ss_pred chhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005487 122 VGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGS 201 (694)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 201 (694)
+.+|+.+-... +.++-....++..-.+.|+-++-..+-+.+.+. ...--+|.+.....-.+++|+++|......
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666554432 223333334444444556655555544444331 122233444444455667777777776654
Q ss_pred CCCCChhhHHHHH-HHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHH
Q 005487 202 GFQPNSVTLTTVI-SSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALI 280 (694)
Q Consensus 202 ~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 280 (694)
.|.-...+.-+ -+|.+..-++-+.+++.-.++. ++.++...|..+....+
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR-------------------------- 231 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR-------------------------- 231 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh--------------------------
Confidence 24433444333 3344555555566666555554 23333333333222222
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH
Q 005487 281 AGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMS-CSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRV 359 (694)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (694)
.=.-..|.+-.+.+.+.+-.. -....-+++. +.--.+-+.|.+++-.+.+.- +..-..++-.|.+.+++
T Consensus 232 -----l~ngr~ae~E~k~ladN~~~~-~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 232 -----LINGRTAEDEKKELADNIDQE-YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDV 301 (557)
T ss_pred -----hhccchhHHHHHHHHhccccc-chhHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccH
Confidence 111112222222222221100 0000001100 111233455555554444332 12223466678899999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCChHHHHHH
Q 005487 360 SSAENVFEKMSKTDVVYWNVMISGYVTVGD-------YFKALAIYSDMKEVGAKPDAV-TFTSVLPACSQLAALEKGKEI 431 (694)
Q Consensus 360 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 431 (694)
.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-.++..-|.. ---++...+.-...++.+..+
T Consensus 302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999887666555443334444443 333444444333333222211 112233334444555666666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---hHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005487 432 HNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERD---LVSWT-SMIAAYGSHGRALEALKLFGEMQQSNAR 507 (694)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 507 (694)
+..+...-...|...+ .+.++++..|.+.+|.++|-.+..|+ ..+|. .|.++|.+.++++.|..++-++.. +
T Consensus 382 lnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~ 457 (557)
T KOG3785|consen 382 LNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---P 457 (557)
T ss_pred HHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---c
Confidence 5555544333333333 35666666677777777666666533 23333 345566666666666555433322 2
Q ss_pred CCHhhHHHH-HHHHHccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 005487 508 PDSITFLAL-LSACSHAGWVDEGGYYFNLMISEYNIQPRNEHY 549 (694)
Q Consensus 508 p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 549 (694)
.+..+...+ ...|.+.+.+=-|.+.|+.+. ...|+++.|
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 233333333 335666666666666666555 345666555
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=8.1e-08 Score=94.84 Aligned_cols=445 Identities=13% Similarity=0.087 Sum_probs=221.7
Q ss_pred hCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHH
Q 005487 184 QDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMARE 263 (694)
Q Consensus 184 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 263 (694)
..+++...+.+.+.+.+. .+-...|.....-.+...|+.++|....+...+.. ..+.++|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 344455555555544442 22222233333333444455555555555444432 3344445555555555555555555
Q ss_pred HHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcC-
Q 005487 264 VFEQTV---LKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKI- 339 (694)
Q Consensus 264 ~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 339 (694)
.|+... +.|...|.-+.-.-.+.|+++.....-..+.+. .+.....|.....+..-.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555432 223344444444444445555555444444443 112223344444555555555555555555554432
Q ss_pred CCchhHHHHH------HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 005487 340 QGDVFINSSL------IDLYFKCGRVSSAENVFEKMSKT---DVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAV 410 (694)
Q Consensus 340 ~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 410 (694)
.|+...+.-. .....+.|.++.|.+-+...... ....-..-...+.+.+++++|..++..+... .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 2333322211 12334556666666665544421 1122233445566777788888888777775 46655
Q ss_pred HHHHHHHHHc-cc-CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhCCCC-ChHHHHHHHHHHH
Q 005487 411 TFTSVLPACS-QL-AALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAV-DEAFKVFNELPER-DLVSWTSMIAAYG 486 (694)
Q Consensus 411 ~~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~-~~~~~~~l~~~~~ 486 (694)
-|...+..+. .. +..+....+|....+.-....... .+--.......+ +..-.++....+. =+.++..+...|-
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~--Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR--RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch--hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 5554444333 22 222223244444433211100000 000000011111 1112222222221 1122233333222
Q ss_pred hcCCHHHHHHHHHHHH----HcC----------CCCCH--hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHH
Q 005487 487 SHGRALEALKLFGEMQ----QSN----------ARPDS--ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHY 549 (694)
Q Consensus 487 ~~~~~~~A~~~~~~~~----~~~----------~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 549 (694)
.-...+-..++.-.+. ..| -+|.. .++..++..+-..|+++.|..+++.+. +..|+ ++.|
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly 408 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELY 408 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHH
Confidence 2111111111111111 111 13443 455566777888999999999999988 66787 4577
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--------cHHH--
Q 005487 550 SCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLS-TLFSACRLHRDIEMGEKIAKLLIEKDPDDSS--------TYIV-- 618 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------~~~~-- 618 (694)
..-++++...|.+++|..+++++.+.+.....++ .-+....+.++.++|..++.+-.+.+-+ .. .|+.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~-~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG-AVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc-hhhhHHHhhhHHHhHh
Confidence 7778999999999999999999887554444444 6667777888999999888876654421 11 2222
Q ss_pred HHHHHhhcCChHHHHHHHHHH
Q 005487 619 LSNMYASVKKWDEVRKIRLKM 639 (694)
Q Consensus 619 l~~~~~~~g~~~~A~~~~~~~ 639 (694)
=|.+|.++|++..|++-+...
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhH
Confidence 266788899998888766544
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=6e-10 Score=117.37 Aligned_cols=245 Identities=13% Similarity=0.018 Sum_probs=178.7
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHc---------ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005487 389 DYFKALAIYSDMKEVGAKPD-AVTFTSVLPACS---------QLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCG 458 (694)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (694)
+.++|...|++..+. .|+ ...+..+..++. ..++.++|...++++++.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788888888775 443 334444433322 3355789999999988876 456777888888899999
Q ss_pred ChHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHH
Q 005487 459 AVDEAFKVFNELPE--R-DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS-ITFLALLSACSHAGWVDEGGYYFN 534 (694)
Q Consensus 459 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 534 (694)
++++|...|++... | +...+..+..++...|++++|...++++.+. .|+. ..+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998876 4 4567888999999999999999999999986 4543 334444555677899999999999
Q ss_pred HhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005487 535 LMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG-LLSTLFSACRLHRDIEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 535 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 612 (694)
++... ..|+ +..+..++.++...|++++|...++++....|+.. .+..+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98743 2354 44677889999999999999999999776666543 4555556666666 47777777776644332
Q ss_pred CccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 613 SSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
+.....+..+|.-.|+.+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22333377778888998888777 7776654
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.2e-06 Score=90.74 Aligned_cols=248 Identities=11% Similarity=0.056 Sum_probs=144.1
Q ss_pred hhHHHHHHhcCCChhHHHHHHhhCCCCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCC
Q 005487 41 CKSLINLYFSCQNYDYAMLVFKTIDNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLG 120 (694)
Q Consensus 41 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 120 (694)
.+..+..|+.+|.++++.-...+....+ -|--+++...+ -.++.+.++...|.+. .|....++.+...+...+
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~kKvGyTP---dymflLq~l~r-~sPD~~~qFa~~l~Q~---~~~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYAKKVGYTP---DYMFLLQQLKR-SSPDQALQFAMMLVQD---EEPLADIEQIVDLFMELN 556 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHcCCCc---cHHHHHHHHHc-cChhHHHHHHHHhhcc---CCCcccHHHHHHHHHHHH
Confidence 3445666666666666666655553322 24456665555 6788888888888765 234444556666666666
Q ss_pred CchhHHHHHHHHHHHcCCCch-hHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 005487 121 SVGIGKMIHTHLIKTGFLLDV-VIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMR 199 (694)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 199 (694)
....+..++-.+++.. .|+. ..-+.++..-.. +-.+-|..++-.-.- +..-|..+...|.++|-.++|++.+.++.
T Consensus 557 ~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~-~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~ 633 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLV-HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLY 633 (1666)
T ss_pred hhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhc-cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHH
Confidence 6666666665555543 3333 233334432221 122222222211000 11226778888888999999998887764
Q ss_pred hC--CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCC-------
Q 005487 200 GS--GFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVL------- 270 (694)
Q Consensus 200 ~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 270 (694)
.- -+..+...----+-.+.-.-.++.+.+.++.|+..++..+..+...+..-|...-..+...++|+....
T Consensus 634 DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yf 713 (1666)
T KOG0985|consen 634 DIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYF 713 (1666)
T ss_pred HHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHH
Confidence 31 000000000011222223345677888888888888888888777777777777777777777776432
Q ss_pred --------CChhHHHHHHHHHHcCCCchHHHHHHHH
Q 005487 271 --------KSVVAWNALIAGYSSRGDSKSCVKLFWR 298 (694)
Q Consensus 271 --------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 298 (694)
.|+...-..|.+.++.|++.+..++.++
T Consensus 714 LgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 714 LGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 3666666778888888888887776544
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=2.6e-10 Score=109.61 Aligned_cols=189 Identities=14% Similarity=0.012 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHc
Q 005487 447 MGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD-SITFLALLSACSH 522 (694)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 522 (694)
|..+...|...|++++|...|+...+ .++..|+.+...+...|+++.|...|++..+. .|+ ...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444555555555555555555443 23345555555556666666666666655553 333 3445555555555
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHcCCHHHH--H
Q 005487 523 AGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE-IREDAGLLSTLFSACRLHRDIEMG--E 599 (694)
Q Consensus 523 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A--~ 599 (694)
.|++++|.+.++...+ ..|+..........+...+++++|...+++... ..|+. |. ........|+...+ .
T Consensus 145 ~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLM 218 (296)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHH
Confidence 5666666666655552 233322111112223334555666655544321 12221 11 11111122332221 1
Q ss_pred HHHH----HHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 600 KIAK----LLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 600 ~~~~----~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
+.+. ...++.|+.+.+|..+|.++...|++++|+..|++..+.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1111 1123334445556666666666666666666666555433
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=2.4e-10 Score=120.27 Aligned_cols=214 Identities=13% Similarity=0.026 Sum_probs=168.9
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCC
Q 005487 423 AALEKGKEIHNHIIESKLETNEIVMGALLDMYA---------KCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGR 490 (694)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 490 (694)
++.+.|...+++.++.. |.+...+..+..++. ..+++++|...+++... .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999988765 334555666665544 23458899999998877 456688888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHhhhcCCHHHHHHHH
Q 005487 491 ALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNE-HYSCLIDLLGRAGRLQEAYGIL 569 (694)
Q Consensus 491 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 569 (694)
+++|...++++.+.+ +.+...+..+...+...|++++|+..++++. .+.|+.. .+..++..+...|++++|+..+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999974 3346778888889999999999999999998 4566633 3344455677789999999999
Q ss_pred HhCCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 570 QSTPEI-RED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 570 ~~~~~~-~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
+++.+. .|+ +..+..++.++...|++++|.+.++++....|.+......++..|...| ++|...++++.+..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 987643 354 4557778888889999999999999998888888888888998889888 48888888876543
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=8.5e-08 Score=99.08 Aligned_cols=598 Identities=11% Similarity=0.012 Sum_probs=294.9
Q ss_pred HHHHHHhhCCCChhhHhHHHHHHHHhCCCCC-chhhhHHHHHHhcCCChhHHHHHHhhCCC--CCchhhHHHHHHHHHcc
Q 005487 7 LTLLRTCTGSKSLKEGKIIHQKVVTLGLQNN-IALCKSLINLYFSCQNYDYAMLVFKTIDN--PLDLSLWNGLMASYTKN 83 (694)
Q Consensus 7 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~ 83 (694)
.-++..|.+.. .+.+...|-+.+ +..++ ...|..|...|...-+...|.+.|++.-+ +....++..+...|++.
T Consensus 463 ~w~a~~~~rK~-~~~al~ali~al--rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~ 539 (1238)
T KOG1127|consen 463 FWVALGCMRKN-SALALHALIRAL--RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE 539 (1238)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc
Confidence 33444444433 444444444444 43455 36788888888888888889998888744 44444788888899999
Q ss_pred CChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHH
Q 005487 84 YMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKM 163 (694)
Q Consensus 84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 163 (694)
.+++.|..+.-..-+......-...|....-.+...+++..+..-|+...+.. +.|...|..++.+|.++|.+..|.+.
T Consensus 540 ~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 540 STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHh
Confidence 99999888844333331111112234444455667778888888888877754 55678888999999999999999999
Q ss_pred hccCCCCCcccHHH---HHHHHHhCCChhHHHHHHHHHHhC------CCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 005487 164 FDEMSERDVASWNT---VISCYYQDGQAEKALELFKKMRGS------GFQPNSVTLTTVISSCARLMDLDRGKEIHKEFI 234 (694)
Q Consensus 164 ~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 234 (694)
|++....++..+.. .....+..|.+.++++.+...... +..--..++..+...+...|=..++..+++.-+
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 98887644443322 223345678888888888776442 111112233333333333333333333333222
Q ss_pred H-------hCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChh--HHHHHHHH-HHcCCCc---h---HHHHHHHH
Q 005487 235 K-------DGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVV--AWNALIAG-YSSRGDS---K---SCVKLFWR 298 (694)
Q Consensus 235 ~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~~~~---~---~a~~~~~~ 298 (694)
+ +....+...|-.+.. |-.+|-... ++.+ .+..++.. +-+.+.. + -+.+.+-.
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASD----------ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhH----------HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 1 111111111111111 112222221 2211 11111111 1111111 0 00000000
Q ss_pred HHHCCCCCCHHHHHHHHHHhhc----cC----ChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 005487 299 MNEEGIKPTLTTISSVLMSCSR----SG----QLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMS 370 (694)
Q Consensus 299 m~~~g~~p~~~~~~~ll~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 370 (694)
-.. ...+..+|..+...+.+ .+ +...|...+...++.. ..+..+++.|.-. ...|.+.-|.-.|-.-.
T Consensus 768 hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~ 843 (1238)
T KOG1127|consen 768 HLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSR 843 (1238)
T ss_pred HHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhh
Confidence 000 11112233333222221 11 1123333333333321 1234444444333 44455655555554332
Q ss_pred ---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHH--H--HhCCCCC
Q 005487 371 ---KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHI--I--ESKLETN 443 (694)
Q Consensus 371 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~--~~~~~~~ 443 (694)
+.+..+|..+...+.+..+++-|...|...+... +.|...|..........|+.-+...++..- . ..|--+.
T Consensus 844 ~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 844 FSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred hccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 2344566666666677777777777777666542 224444444444444555555555555542 1 1233344
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC------------C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC
Q 005487 444 EIVMGALLDMYAKCGAVDEAFKVFNELPE------------R-DLVSWTSMIAAYGSHGRALEALKLFGEMQQS-NARPD 509 (694)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~ 509 (694)
...+.........+|+.++-+...+.+.. | +.++|...+...-+.+.+..|.+...+.+.- ..+-+
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555666666655555444433 1 2345666666666666666666666554321 00122
Q ss_pred HhhHH----HHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH--HhhhcCCHHHHHHHHHhCCCCCC---C-H
Q 005487 510 SITFL----ALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLID--LLGRAGRLQEAYGILQSTPEIRE---D-A 579 (694)
Q Consensus 510 ~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~p---~-~ 579 (694)
...|+ ...+.+...|.++.|...+... |-..--...+. ...-.|+++++.+.|+++..+.. + .
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~-------~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~v 1075 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKE-------WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKV 1075 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhccc-------chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchh
Confidence 23333 2223344455555444333221 11100000111 11235677777777776554222 2 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHH
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDE 631 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 631 (694)
..+..++......+..+.|...+-+++.+.|.+......|+.++.-..+-..
T Consensus 1076 vLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ 1127 (1238)
T KOG1127|consen 1076 VLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHG 1127 (1238)
T ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhh
Confidence 2334444445556667777777777777776666666666665555444333
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.6e-09 Score=101.69 Aligned_cols=162 Identities=16% Similarity=0.137 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHH
Q 005487 445 IVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARP-DSITFLALLSAC 520 (694)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 520 (694)
..+..+...+...|++++|.+.++.... .+...+..+...+...|++++|...+++.......+ ....+..+..++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3344444455555555555555554433 233445555666666666666666666666532112 234455556667
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 005487 521 SHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMG 598 (694)
Q Consensus 521 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 598 (694)
...|++++|...+++.... .|+ ...+..++..+...|++++|...++++....| +...+..++..+...|+.++|
T Consensus 146 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777777776632 333 44666677777777777777777776654333 344555556666667777777
Q ss_pred HHHHHHHHhcC
Q 005487 599 EKIAKLLIEKD 609 (694)
Q Consensus 599 ~~~~~~~~~~~ 609 (694)
....+.+....
T Consensus 223 ~~~~~~~~~~~ 233 (234)
T TIGR02521 223 QRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhhC
Confidence 77776665543
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.3e-07 Score=92.35 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=54.3
Q ss_pred HHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHH-HHHHHhhhcCCChH
Q 005487 80 YTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIA-SSTAGMYAKCNSFE 158 (694)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 158 (694)
+..+|++++|.+...++... .+.+...+..-+-+..+.+.++.|..+.+. .+.......+ ..-.-+..+.+..+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred hccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHcccHH
Confidence 34445555555555555543 233344444444455555555555433221 1100000000 00111223556666
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005487 159 CAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSG 202 (694)
Q Consensus 159 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 202 (694)
+|+..++-....+..+...-...+.+.|++++|+++|+.+.+++
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 66666663333333344444555666666666666666665543
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=5.5e-08 Score=98.76 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 593 RDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 593 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
.=.++|..+++-+++..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 4578899999999999999999999999999999999999988764
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.6e-08 Score=91.07 Aligned_cols=392 Identities=14% Similarity=0.060 Sum_probs=254.2
Q ss_pred CCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChh-HHHHHHHHHHcC-CCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005487 239 VSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVV-AWNALIAGYSSR-GDSKSCVKLFWRMNEEGIKPTLTTISSVLM 316 (694)
Q Consensus 239 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 316 (694)
+.+.......+.+|...++-+.|...+.++++.-.. .-+.++.-+.+. ++-.++.--+...... .+........++.
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQVIEALLE 172 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-cchHHHHHHHHHH
Confidence 335566677888888899999999999888765333 333333333332 2222222222222221 0111111111111
Q ss_pred HhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHH--HHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhcCC
Q 005487 317 SCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDL--YFKCGRVSSAENVFEKMS-----KTDVVYWNVMISGYVTVGD 389 (694)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 389 (694)
.-.+ .+...-..|.....++........+.+ .+-.++...|...+-.+. ..|+.....+...+...|+
T Consensus 173 l~v~-----g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 173 LGVN-----GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred Hhhc-----chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 0000 000111111122223333333333333 333455555555443332 4577788899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005487 390 YFKALAIYSDMKEVGAKPDAVT-FTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFN 468 (694)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (694)
.++|+..|++.... .|+..+ .....-.+.+.|+.+....+...+.... ..+...|..-+..+...++++.|+.+-+
T Consensus 248 n~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred chHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999988764 343322 1222223456788888888777765533 1222223233344456788999999998
Q ss_pred hCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC
Q 005487 469 ELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARP-DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQP 544 (694)
Q Consensus 469 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 544 (694)
+... .+...+-.-...+...|++++|.-.|+..+.. .| +..+|..|+.+|...|.+.+|...-+...+. ++.
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~ 400 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQN 400 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhc
Confidence 8877 34445555567888999999999999999885 55 5799999999999999999999888877643 344
Q ss_pred ChHHHHHHH-HHhhh-cCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 005487 545 RNEHYSCLI-DLLGR-AGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSN 621 (694)
Q Consensus 545 ~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 621 (694)
+..+...++ ..+.. -.--|+|.+++++..+..|+. .....++..|...|.++.++.++++.+...|+ ...+..|++
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd 479 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGD 479 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHH
Confidence 555665553 33322 234589999999999899985 57788888999999999999999999998885 578999999
Q ss_pred HHhhcCChHHHHHHHHHHHhCCC
Q 005487 622 MYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 622 ~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
++...+.+.+|.+.|.......+
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCc
Confidence 99999999999999998776554
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=5.9e-07 Score=90.99 Aligned_cols=240 Identities=14% Similarity=0.119 Sum_probs=147.8
Q ss_pred CchhhhHHHH--HHhcCCChhHHHHHHhhCCCCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCC--------CCCc
Q 005487 37 NIALCKSLIN--LYFSCQNYDYAMLVFKTIDNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYL--------KPDS 106 (694)
Q Consensus 37 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~ 106 (694)
|..+...+++ .|.-.|+.+.|.+..+.++.. ..|..|.+.|.+..+.+-|.-.+-.|....|. .|+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~---~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD---SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh---HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 3444455544 467789999998877776553 27999999999998888877776666532111 121
Q ss_pred ccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCC-CCcccHHHHHHHHHhC
Q 005487 107 YTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSE-RDVASWNTVISCYYQD 185 (694)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 185 (694)
.+=..+.-.....|.+++|+.+|..-.+.. .|=..|...|.+++|.++-+.-.. .=..+|..-...+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222222333447789999999998876643 333467888999999998776443 2233566666667777
Q ss_pred CChhHHHHHHHHHHhCC-------------------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHH
Q 005487 186 GQAEKALELFKKMRGSG-------------------FQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISS 246 (694)
Q Consensus 186 ~~~~~a~~~~~~m~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (694)
++.+.|++.|++..... -..|...|.-...-+-..|+.+.|..+|....+ |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 88888888887632110 011222222222223344555555555554433 33
Q ss_pred HHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005487 247 ALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMN 300 (694)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 300 (694)
.+++..|-.|+.++|-.+-++- .|..+...+.+.|-..|++.+|..+|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4555666666666666665543 345566667777777788777777776653
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=111.88 Aligned_cols=220 Identities=11% Similarity=0.058 Sum_probs=168.5
Q ss_pred cccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHH
Q 005487 420 SQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALK 496 (694)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 496 (694)
.+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+.+..+ .|..+...|...|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45666777777777666655 45667777777777777877788888877776 344567777778888888888888
Q ss_pred HHHHHHHcCCC-----C---CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHH
Q 005487 497 LFGEMQQSNAR-----P---DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGI 568 (694)
Q Consensus 497 ~~~~~~~~~~~-----p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 568 (694)
.++.-+....+ + +...-.. ..+.....+....++|-.+....+..+|+++...|+-+|.-.|++++|+..
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88877654211 0 0000000 122223345566677777765667668888999999999999999999999
Q ss_pred HHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 569 LQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 569 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
|+.+...+|+ ...|+.|+.++....+.++|+..|++++++.|.-..++++||-.|...|.|+||.+.|-.++..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999988885 5789999999999999999999999999999999999999999999999999999998776543
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=4.2e-07 Score=90.85 Aligned_cols=259 Identities=17% Similarity=0.196 Sum_probs=126.9
Q ss_pred HHHHHHhcCCChhHHHHHHhhCCCCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCc
Q 005487 43 SLINLYFSCQNYDYAMLVFKTIDNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSV 122 (694)
Q Consensus 43 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (694)
..+.+|....++++|+.+-+....|.-...-.+.+.++...|+-++|-++- .+ +-.++ ..+..|.+.|.+
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s-----dgd~l-aaiqlyika~~p 631 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK----ES-----DGDGL-AAIQLYIKAGKP 631 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc----cc-----cCccH-HHHHHHHHcCCc
Confidence 456788888888888888777666643323344455556667766665432 11 11111 234555566666
Q ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcc--------cH-------------------
Q 005487 123 GIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVA--------SW------------------- 175 (694)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~------------------- 175 (694)
..|....-. ...+..|..+...+..++.+..-+++|-.+|+++..++.. .|
T Consensus 632 ~~a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~le 709 (1636)
T KOG3616|consen 632 AKAARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLE 709 (1636)
T ss_pred hHHHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHH
Confidence 554432211 1112234444444444444444455555555554432211 01
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 005487 176 NTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKC 255 (694)
Q Consensus 176 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 255 (694)
......+.+.|+++.|+..|-+.. .....+.+....+++.+|..+++.+..+. ....-|..+...|...
T Consensus 710 e~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~ 778 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANK 778 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccc
Confidence 111122233344444444333321 11223444445566666666666665542 2233455566666667
Q ss_pred CChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHH
Q 005487 256 GCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMH 331 (694)
Q Consensus 256 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 331 (694)
|+++.|.++|-+.. .++..|..|.+.|+|++|.++-.+. .|.......|..-..-....|.+.+|++++
T Consensus 779 ~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 779 GDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 77777766665432 3455566666666666666665443 222333333433333344444444444443
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=1.9e-09 Score=92.48 Aligned_cols=194 Identities=11% Similarity=0.029 Sum_probs=152.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 005487 447 MGALLDMYAKCGAVDEAFKVFNELPER---DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHA 523 (694)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 523 (694)
...+.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|....-+|.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 345667788888998888888888772 34478888888899999999999999988853 33467888888888888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 005487 524 GWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIA 602 (694)
Q Consensus 524 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~ 602 (694)
|++++|...|+++...-...-...+|..++-+-.++|+.+.|...|++..+..|+ +.....+.......|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 8999999999988754222222558888888888999999999999988876665 567778888888899999999999
Q ss_pred HHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 603 KLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 603 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
++.....+.........+.+-...|+-+.|.++=..+..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 988888777777777778888888888888777665543
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=1.7e-07 Score=92.63 Aligned_cols=418 Identities=12% Similarity=0.044 Sum_probs=273.2
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHcCCCchHHHH
Q 005487 218 ARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLK---SVVAWNALIAGYSSRGDSKSCVK 294 (694)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 294 (694)
...+++.......+.+++ +.+....+.....-.+...|+-++|....+..... +.+.|..+.-.+-...++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 344667777777777776 34555566666666677889999999988876543 56789999888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---
Q 005487 295 LFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSK--- 371 (694)
Q Consensus 295 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 371 (694)
.|......+ +.|...+.-+--.-.+.++++..........+.. +.....|..+..++.-.|+...|..+++...+
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988763 3455667766666777888888877777766653 22455677788888888999888888776542
Q ss_pred --CChhHHHH------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHcccCChHHHHHHHHHHHHhCCCC
Q 005487 372 --TDVVYWNV------MISGYVTVGDYFKALAIYSDMKEVGAKPDAVTF-TSVLPACSQLAALEKGKEIHNHIIESKLET 442 (694)
Q Consensus 372 --~~~~~~~~------l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (694)
++...+.. ......+.|..++|.+.+..-... ..|...+ .+-...+.+.+++++|..++..++..+ |.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-ch
Confidence 33332222 223456778888888877665432 2222222 233455678889999999999888875 33
Q ss_pred ChhHHHHHHHHHHhcCChHHHH-HHHhhCCC--CChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 005487 443 NEIVMGALLDMYAKCGAVDEAF-KVFNELPE--RDLVSWTSMIAAYGS-HGRALEALKLFGEMQQSNARPDSITFLALLS 518 (694)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 518 (694)
+...|..+..++.+-.+.-++. .+|....+ |-...-..+--.... ..-.+..-.++..+.+.|+++-...+..+
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL-- 329 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL-- 329 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH--
Confidence 4455555566665333333333 56665544 111111111111111 22234445667777787766533333333
Q ss_pred HHHccCCHHHHHHHHHHhHH---hcC----------CCCChH--HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHH
Q 005487 519 ACSHAGWVDEGGYYFNLMIS---EYN----------IQPRNE--HYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLL 582 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~~---~~~----------~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~ 582 (694)
|-.....+-..++.-.+.. ..+ -+|++. ++..++..+.+.|+++.|..+++.+....|.. ..+
T Consensus 330 -yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 330 -YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred -HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 2221111111111111111 000 134444 44567889999999999999999998777764 456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 583 STLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 583 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
..-+..+...|+.+.|...++.+.+++-.|.-....-+.-..+.++.++|.++..++-..|.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 66677888899999999999999999987777777788899999999999999999877664
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=6.4e-09 Score=100.03 Aligned_cols=228 Identities=11% Similarity=0.007 Sum_probs=152.9
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 005487 388 GDYFKALAIYSDMKEVG-AKPD--AVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAF 464 (694)
Q Consensus 388 ~~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (694)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666432 1222 3445666667778888888888888887765 456778888999999999999999
Q ss_pred HHHhhCCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 005487 465 KVFNELPE--R-DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYN 541 (694)
Q Consensus 465 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 541 (694)
..|+...+ | +..+|..++.++...|++++|.+.+++..+. .|+..........+...++.++|...+..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998866 3 4567888888899999999999999999986 45433222222234556789999999977652 2
Q ss_pred CCCChHHHHHHHHHhhhcCCH--HHHHHHHHhCCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC
Q 005487 542 IQPRNEHYSCLIDLLGRAGRL--QEAYGILQSTPE----IRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD-DS 613 (694)
Q Consensus 542 ~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~ 613 (694)
..|+...+ .+... ..|+. +++++.+.+..+ ..| ....|..++..+...|++++|+..|+++++.+|. ..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332222 23333 34444 334434433322 222 2357889999999999999999999999999974 43
Q ss_pred ccHHHHHHHH
Q 005487 614 STYIVLSNMY 623 (694)
Q Consensus 614 ~~~~~l~~~~ 623 (694)
.....++.+.
T Consensus 272 e~~~~~~e~~ 281 (296)
T PRK11189 272 EHRYALLELA 281 (296)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=2.9e-07 Score=91.91 Aligned_cols=492 Identities=15% Similarity=0.167 Sum_probs=245.4
Q ss_pred hcCCChhHHHHHHhhCCC-CCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHH
Q 005487 49 FSCQNYDYAMLVFKTIDN-PLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKM 127 (694)
Q Consensus 49 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 127 (694)
...|+++.|..+++.... |+....|..+...-...|+.--|...|..+- ++..++.
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~-----------------------dvak~r~ 511 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIG-----------------------DVAKARF 511 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHH-----------------------HHHHHHH
Confidence 455677777777777643 5554456666665566666555554444332 2222222
Q ss_pred HHHHH-------HHHcCC-CchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 005487 128 IHTHL-------IKTGFL-LDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMR 199 (694)
Q Consensus 128 ~~~~~-------~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 199 (694)
+++.. ++.|-. .+..-..+++.+ -..++.+|..+|-+-. .-...|..|....+|++++.+-+.
T Consensus 512 lhd~~eiadeas~~~ggdgt~fykvra~lai--l~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~-- 582 (1636)
T KOG3616|consen 512 LHDILEIADEASIEIGGDGTDFYKVRAMLAI--LEKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA-- 582 (1636)
T ss_pred HHHHHHHHHHHhHhhCCCCchHHHHHHHHHH--HHhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh--
Confidence 22211 111111 111222222222 2345666666654321 122344555555666666655332
Q ss_pred hCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHh--cCCCCChhHHH
Q 005487 200 GSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFE--QTVLKSVVAWN 277 (694)
Q Consensus 200 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~ 277 (694)
.|.+.-...-.+-++++...|+-++|-++- .+..--.+-+..|.+.|.+.+|.+... +....|.....
T Consensus 583 -~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~ 652 (1636)
T KOG3616|consen 583 -KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILE 652 (1636)
T ss_pred -cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHH
Confidence 222111122233344444445444443221 111112234566777777666655432 22233444455
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchh-HHHHHHHHHHhc
Q 005487 278 ALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVF-INSSLIDLYFKC 356 (694)
Q Consensus 278 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 356 (694)
.+..++.+..-+++|-++|+++.. +...+..+-+..-+.+|.++-... ++.... .-.....-+...
T Consensus 653 ~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~ 719 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQI 719 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHH
Confidence 555555555556666666655532 111122222222233333322211 010000 011222334445
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHH
Q 005487 357 GRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHII 436 (694)
Q Consensus 357 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 436 (694)
|+++.|..-|-+.. ..-..+.+......+.+|+.+++.+.... ....-|..+...|+..|+++.|.++|-+.
T Consensus 720 ~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 720 GQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred HhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 66666655553321 11223445566777777887777776653 22334556667777888888887777543
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 005487 437 ESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDL--VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFL 514 (694)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 514 (694)
..++-.+.+|.+.|+|+.|.++-.+...|.. ..|-+-..-+-.+|++.+|.+++-... .|+
T Consensus 792 --------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~----- 854 (1636)
T KOG3616|consen 792 --------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD----- 854 (1636)
T ss_pred --------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----
Confidence 2344567778888888888887777766433 345555555667777777777664332 233
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q 005487 515 ALLSACSHAGWVDEGGYYFNLMISEYNIQPR--NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLH 592 (694)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 592 (694)
..+..|-+.|..++.+++..+-. |+ ..+...++.-|...|++..|...|-++. -|......|..+
T Consensus 855 ~aiqmydk~~~~ddmirlv~k~h------~d~l~dt~~~f~~e~e~~g~lkaae~~flea~-------d~kaavnmyk~s 921 (1636)
T KOG3616|consen 855 KAIQMYDKHGLDDDMIRLVEKHH------GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-------DFKAAVNMYKAS 921 (1636)
T ss_pred HHHHHHHhhCcchHHHHHHHHhC------hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-------hHHHHHHHhhhh
Confidence 23455677777777777765432 22 3455566777777788887777666554 344444555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 593 RDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 593 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
+-+++|-++.+ .....|..-.....|+-.-.| +.|.+++.+
T Consensus 922 ~lw~dayriak---tegg~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 922 ELWEDAYRIAK---TEGGANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred hhHHHHHHHHh---ccccccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 55554443322 223334333444444433333 466676665
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.19 E-value=2.1e-07 Score=96.37 Aligned_cols=550 Identities=11% Similarity=0.040 Sum_probs=315.1
Q ss_pred CCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCC-CchhHHH
Q 005487 67 PLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFL-LDVVIAS 145 (694)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 145 (694)
+.-..+|..|...|...-+..+|.+.|+...+. ...+......+...+....+++.|..+.-..-+.... .-..-|.
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 333337888888888777888899999988876 5566777888888888888888888883333221100 0112233
Q ss_pred HHHHhhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHH--HHHHhcc
Q 005487 146 STAGMYAKCNSFECAVKMFDEMSE---RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTV--ISSCARL 220 (694)
Q Consensus 146 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~ 220 (694)
...-.|...++...|+.-|+...+ .|...|..+..+|.+.|++..|+++|.+.... .|+.. |... ....+..
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~-y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK-YGRFKEAVMECDN 643 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH-HHHHHHHHHHHHh
Confidence 344456778888888888887765 35567778888999999999999999887663 44432 2222 2233466
Q ss_pred CChhHHHHHHHHHHHh------CCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCC-----------CChhHHHHHHHHH
Q 005487 221 MDLDRGKEIHKEFIKD------GFVSDSYISSALVDMYGKCGCLEMAREVFEQTVL-----------KSVVAWNALIAGY 283 (694)
Q Consensus 221 ~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~ 283 (694)
|.+.++...+...... +...-..++..+...+...|-..+|..++++..+ .+...|..+-+
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd-- 721 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD-- 721 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH--
Confidence 8888888887776643 1111223333333334444444444444443211 11222222221
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhH------HHHHHHHHhcCCCchhHHHHHHHHHHh--
Q 005487 284 SSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGK------VMHGYIIRNKIQGDVFINSSLIDLYFK-- 355 (694)
Q Consensus 284 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 355 (694)
|..+|-... .. .|+......+..-....+....-. +.+-. ......+...+..+...|.+
T Consensus 722 --------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 722 --------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred --------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHH
Confidence 222222222 11 233222222222233333321111 11110 01111123333333333332
Q ss_pred --cC----CHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChH
Q 005487 356 --CG----RVSSAENVFEKMS---KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALE 426 (694)
Q Consensus 356 --~~----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 426 (694)
.+ +...|+..+.... ..+...|+.|.-. ...|++.-+..-|-+-.... +-...+|..+.-.+....+++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 11 2235666666544 4567788877665 55577776666665544432 345667777777888999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-----C---CChHHHHHHHHHHHhcCCHHHHHHHH
Q 005487 427 KGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELP-----E---RDLVSWTSMIAAYGSHGRALEALKLF 498 (694)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 498 (694)
.|...|....... |.+...|-.........|+.-++..+|..-. . ++..-|..........|+.++-+...
T Consensus 868 ~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 868 HAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 9999999887765 3445555444445556787777777776521 1 45555555555556666655544433
Q ss_pred HH----------HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHH----HHHHHHhhhcCCHHH
Q 005487 499 GE----------MQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHY----SCLIDLLGRAGRLQE 564 (694)
Q Consensus 499 ~~----------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~ 564 (694)
++ .... .+.....|...+....+.+.+.+|.+...+...-...+-+...| ...++.++..|.++.
T Consensus 947 ~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~ 1025 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFES 1025 (1238)
T ss_pred hhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhh
Confidence 33 3332 23335677777777777788888777776654211112222233 356788888999998
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---cHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 565 AYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS---TYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 565 A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
|...+.... ...+..+...-+.. .-.|+++++.+.|++++.+...+.. ....++......+..+.|...+-+...
T Consensus 1026 A~~a~~~~~-~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1026 AKKASWKEW-MEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred Hhhhhcccc-hhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 877666544 22333332222222 4568999999999999988755444 334455566667788888877655543
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.5e-08 Score=96.37 Aligned_cols=236 Identities=14% Similarity=0.077 Sum_probs=124.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCC------ChhHHHHHHH
Q 005487 379 VMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLET------NEIVMGALLD 452 (694)
Q Consensus 379 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 452 (694)
.+.+...+..++..|++.+....... -+..-++....++...|............++.|... -...+..+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444445555566666655555542 222223333334555555544444444433332110 0111122334
Q ss_pred HHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCHHHHHH
Q 005487 453 MYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS-ITFLALLSACSHAGWVDEGGY 531 (694)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 531 (694)
+|.+.++++.|+..|++...+... -....+....++++...+...-. .|.. .-...-...+.+.|++..|+.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 555566677777776664431110 11122233445555554444432 2332 222222555666777777777
Q ss_pred HHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005487 532 YFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKD 609 (694)
Q Consensus 532 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 609 (694)
.|.++++. .|+ ...|...+-+|.+.|.+..|++-.+...+..|+. ..|..-+.++...+++++|.+.|+++++.+
T Consensus 380 ~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 380 HYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777632 343 5566677777777777777777766666665553 345555556666677777777777777777
Q ss_pred CCCCccHHHHHHHHhhc
Q 005487 610 PDDSSTYIVLSNMYASV 626 (694)
Q Consensus 610 p~~~~~~~~l~~~~~~~ 626 (694)
|++..+...+.+++..+
T Consensus 457 p~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 457 PSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 77766666666666554
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.7e-06 Score=87.85 Aligned_cols=422 Identities=11% Similarity=0.100 Sum_probs=208.7
Q ss_pred hHHHHHH--HHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHc--------CCCch
Q 005487 72 LWNGLMA--SYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTG--------FLLDV 141 (694)
Q Consensus 72 ~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~ 141 (694)
+...++. .|..-|+.+.|.+-.+.+. +...|..+.+.|.+.++++-|+-.+..|.... .+.+.
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 5555553 3556677777766666543 33567777777777777777776666654321 01111
Q ss_pred hHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 005487 142 VIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLM 221 (694)
Q Consensus 142 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 221 (694)
..-....-.....|.+++|+.++.+... |..|=..|...|.|++|+++-+.--.- .=..||..-..-+-..+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARR 872 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhc
Confidence 1111222223445566666666655443 333334455556666666654432111 11224444444444455
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005487 222 DLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNE 301 (694)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 301 (694)
|.+.|.+.|++... +--.++..|. .++.....+.+++. |...|......+-..|+.+.|+.+|.....
T Consensus 873 Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 55555555553211 1111111110 11122222222222 345555566666677888888888776643
Q ss_pred CCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHH
Q 005487 302 EGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMI 381 (694)
Q Consensus 302 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 381 (694)
|-.+++..|-.|+.++|.++-++ .-|....-.+.+.|-..|++.+|..+|-+.. ++...|
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAI 1000 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAI 1000 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHH
Confidence 45566667777888877776654 2355555667778888888888887776543 222222
Q ss_pred HHHHh---------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHH--------HHHH-
Q 005487 382 SGYVT---------------VGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHN--------HIIE- 437 (694)
Q Consensus 382 ~~~~~---------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~- 437 (694)
+.+-. ..+.-.|-++|++. |. -+...+..|.+.|.+.+|.++-- +++.
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 22211 11222333333321 11 11222334555565555554311 1112
Q ss_pred -hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCH----h
Q 005487 438 -SKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQ-SNARPDS----I 511 (694)
Q Consensus 438 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p~~----~ 511 (694)
.....|+...+...+.++...++++|..++-...+ |...+..|. ..+..-..++-+.|-- ..-.|+. .
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~-----~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~ 1146 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE-----FSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQ 1146 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHH
Confidence 23334566666677777777777777666543221 222222222 2222222333333321 1112333 3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHH
Q 005487 512 TFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQE 564 (694)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 564 (694)
.+..+...|.++|.+..|.+-|.++-.+ ...++++.+.|+.++
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQAGdK----------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQAGDK----------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhhhhH----------HHHHHHHHhcCCcce
Confidence 4566667888888888887777655321 123455566666553
No 91
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.2e-10 Score=77.48 Aligned_cols=50 Identities=40% Similarity=0.695 Sum_probs=43.4
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 005487 170 RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCAR 219 (694)
Q Consensus 170 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 219 (694)
||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=2.4e-08 Score=101.40 Aligned_cols=149 Identities=10% Similarity=0.009 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhc-------------CCCCChH--HHHHHHHHhh
Q 005487 493 EALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEY-------------NIQPRNE--HYSCLIDLLG 557 (694)
Q Consensus 493 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~ 557 (694)
.+..++..+...|+++ +|..+-..|....+.+-...++....... .-.|+.. ++..++..|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3445556666666443 34444444444444444455555443221 1123332 4466788889
Q ss_pred hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHH
Q 005487 558 RAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIR 636 (694)
Q Consensus 558 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 636 (694)
..|++++|+++++++++..|. +..+..-+..+.+.|++.+|.+.++.+.++++.|.-.....+..+.+.|+.++|.+.+
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999998887776 5677888888999999999999999999999999888888999999999999999999
Q ss_pred HHHHhCCC
Q 005487 637 LKMKELGL 644 (694)
Q Consensus 637 ~~~~~~~~ 644 (694)
..+...+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88866554
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=3.2e-07 Score=83.42 Aligned_cols=293 Identities=13% Similarity=0.075 Sum_probs=153.9
Q ss_pred HHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHH---HHHHHhcCCHHHHHHHHhcCCC--CChh-HHHHHHHH
Q 005487 310 TISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSL---IDLYFKCGRVSSAENVFEKMSK--TDVV-YWNVMISG 383 (694)
Q Consensus 310 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~ 383 (694)
--.-+...+...|++..|..-|...++.+ +..|.++ ...|...|+...|+.-+..+.+ ||.. .-..-...
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34445556666667777766666655442 2233322 3456666666666666665553 3322 12223345
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH--HH------------HHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 005487 384 YVTVGDYFKALAIYSDMKEVGAKPDA--VT------------FTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGA 449 (694)
Q Consensus 384 ~~~~~~~~~A~~~~~~m~~~g~~p~~--~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (694)
+.+.|.++.|..-|+...+.....+. .. ....+..+...||...|++....+++.. +.+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 66777788887777777765321111 11 1122334555667777777777666654 456666666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-h---HHHH------
Q 005487 450 LLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSI-T---FLAL------ 516 (694)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~---~~~l------ 516 (694)
-..+|...|++..|+.-+....+ .+..++..+-..+...|+.+.++...++..+. .||.. + |..+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 66777777777777655554433 45555555666666677777777777766663 45542 1 1111
Q ss_pred ---HHHHHccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHH
Q 005487 517 ---LSACSHAGWVDEGGYYFNLMISEYNIQPRN-----EHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFS 587 (694)
Q Consensus 517 ---~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 587 (694)
+....+.++|.+++...+... ...|.. ..+..+-.++...|++-+|++.-.++..+.|+ ..++..-+.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 011223344444444444444 122331 12233344444555555555555555544443 334444445
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Q 005487 588 ACRLHRDIEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 588 ~~~~~~~~~~A~~~~~~~~~~~p~~ 612 (694)
+|.....++.|+.-|+++.+.+|+|
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCccc
Confidence 5555555555555555555555544
No 94
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=6.4e-08 Score=96.99 Aligned_cols=202 Identities=16% Similarity=0.223 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005487 378 NVMISGYVTVGDYFKALAIYSDMKEV-----GA-KP-DAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGAL 450 (694)
Q Consensus 378 ~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 450 (694)
+.+...|...+++.+|..+|+++... |- .| -..++..|..+|.+.|++++|...++.+.+.
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------ 312 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------ 312 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH------------
Confidence 34667788888888888888887652 11 11 1234444455566666666666555544321
Q ss_pred HHHHHhcCChHHHHHHHhhCCC---CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HhhHHHHHHH
Q 005487 451 LDMYAKCGAVDEAFKVFNELPE---RDL-VSWTSMIAAYGSHGRALEALKLFGEMQQS---NARPD----SITFLALLSA 519 (694)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~ 519 (694)
++.... +.+ ..++.++..+...+++++|..++++..+. -+.++ ..+++.|...
T Consensus 313 ----------------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 313 ----------------YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred ----------------HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 111000 111 13455566666777777777776655432 01111 2567888888
Q ss_pred HHccCCHHHHHHHHHHhHHhc----C-CCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCC----CCC---C-HHHHHHH
Q 005487 520 CSHAGWVDEGGYYFNLMISEY----N-IQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPE----IRE---D-AGLLSTL 585 (694)
Q Consensus 520 ~~~~g~~~~A~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p---~-~~~~~~l 585 (694)
|...|++++|.++++.++... + ..+. ...++.++..|.+.+++++|.++|.+... ..| + ...+..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 888888888888888776432 1 1222 34667788888888888888888876433 333 3 3567889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 005487 586 FSACRLHRDIEMGEKIAKLLIE 607 (694)
Q Consensus 586 ~~~~~~~~~~~~A~~~~~~~~~ 607 (694)
+.+|...|+++.|+++.++++.
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999988873
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=2.5e-07 Score=84.11 Aligned_cols=310 Identities=13% Similarity=0.088 Sum_probs=214.3
Q ss_pred HHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHH---HHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhc
Q 005487 245 SSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALI---AGYSSRGDSKSCVKLFWRMNEEGIKPTLTTIS-SVLMSCSR 320 (694)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~ 320 (694)
..-+...+...|++..|+.-|...++.|+..|.++. ..|...|+...|+.-+.+.++. +||...-. .-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 344556677778888888888888888887777765 4678888888888888887775 67643221 12223456
Q ss_pred cCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005487 321 SGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDM 400 (694)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 400 (694)
.|.++.|..-|+.+.+.....+. ...++.+.-..++- ......+..+...|+...|+.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~------------~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEH------------WVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHH------------HHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 67777777777776665432111 01111111111111 11223445566788888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChH--
Q 005487 401 KEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDLV-- 476 (694)
Q Consensus 401 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-- 476 (694)
.+.. +.|...+..-..+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...++..+ ||..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 8752 4466666667778888899988888887776654 34555566677888888999999888888877 4332
Q ss_pred --HHHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCC--H---hhHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 005487 477 --SWTSM---------IAAYGSHGRALEALKLFGEMQQSNARPD--S---ITFLALLSACSHAGWVDEGGYYFNLMISEY 540 (694)
Q Consensus 477 --~~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 540 (694)
.|..| +......++|.++++..+...+.. |. . ..+..+-.++...|++.+|++...+++
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL--- 334 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL--- 334 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHH---
Confidence 12211 223456788999999999888864 43 2 345566678889999999999999998
Q ss_pred CCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH
Q 005487 541 NIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG 580 (694)
Q Consensus 541 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 580 (694)
.+.|+ +.++-.-+.+|.-...+++|+.-|+++.+..++..
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 67787 77888889999999999999999999987776654
No 96
>PF13041 PPR_2: PPR repeat family
Probab=99.08 E-value=4.6e-10 Score=74.66 Aligned_cols=50 Identities=36% Similarity=0.707 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 005487 372 TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQ 421 (694)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 421 (694)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998864
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=7.1e-09 Score=97.90 Aligned_cols=251 Identities=18% Similarity=0.159 Sum_probs=124.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCh
Q 005487 350 IDLYFKCGRVSSAENVFEKMSKT----DVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAAL 425 (694)
Q Consensus 350 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 425 (694)
++-+.-.|++..++.-.+ .... +......+.+++...|+++.++. ++.... .|....+..+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 345556788888775554 2111 22344456677777787665443 332322 55555555555544443444
Q ss_pred HHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005487 426 EKGKEIHNHIIESKLE-TNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQS 504 (694)
Q Consensus 426 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (694)
+.+..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444444333222222 22222233334455667777777666654 34455555666677777777777777776653
Q ss_pred CCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-H
Q 005487 505 NARPDSITFLALLSACSH----AGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-A 579 (694)
Q Consensus 505 ~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 579 (694)
..| .+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.++.+....|++++|.++++++.+..|+ +
T Consensus 161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 222 333333333221 1246666666666642 23345555555666666666666666666555543332 3
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCC
Q 005487 580 GLLSTLFSACRLHRDI-EMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~ 612 (694)
.++..++......|+. +.+.+.++++....|++
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 4444444444444444 44555555555555543
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.5e-07 Score=91.20 Aligned_cols=244 Identities=16% Similarity=0.136 Sum_probs=157.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHH
Q 005487 348 SLIDLYFKCGRVSSAENVFEKMSK--TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKP--D----AVTFTSVLPAC 419 (694)
Q Consensus 348 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p--~----~~~~~~ll~~~ 419 (694)
.+.+...+..+++.|++-+..... .+..-++....+|...|.+.++.......++.|-.. + ...+..+..++
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 345555555666666666555442 233345555666777777666666665555443111 1 11222344466
Q ss_pred cccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChH-HHHHHHHHHHhcCCHHHHHH
Q 005487 420 SQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDLV-SWTSMIAAYGSHGRALEALK 496 (694)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~ 496 (694)
.+.++++.++..|.+.+.....|+. ..+....+++....+...- |... ....-...+.+.|++..|+.
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 7778899999999987664433332 2334455666555554433 3221 22233667889999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 005487 497 LFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEI 575 (694)
Q Consensus 497 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 575 (694)
.|.++++.. +.|...|.....+|.+.|.+..|+.-.+... .+.|+ ...|..-+.++....++++|++.|++..+.
T Consensus 380 ~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i---eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 380 HYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI---ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999985 5568999999999999999999999988887 34666 457777788888889999999999999988
Q ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005487 576 REDAGLLSTLFSACRLH-RDIEMGEKIAKL 604 (694)
Q Consensus 576 ~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 604 (694)
.|+..-+..-+.-|... ......+++.++
T Consensus 456 dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 88765444444444332 222333444444
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.5e-07 Score=82.41 Aligned_cols=393 Identities=15% Similarity=0.112 Sum_probs=209.7
Q ss_pred CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCC--ChhHHHH-
Q 005487 202 GFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLK--SVVAWNA- 278 (694)
Q Consensus 202 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~- 278 (694)
|+....--+..++..+.+..++..|.+++..-.+.. +.+....+.|..+|-...++..|-..++++... ...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 334444446666666677777777777777666553 335566677777777777777777777766442 2222222
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 005487 279 LIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGR 358 (694)
Q Consensus 279 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (694)
-...+.+.+.+.+|+++...|... |+...-..-+.+. .....++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~D 127 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGD 127 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------Hhccccc
Confidence 234555677777777777666442 2211111111111 1122344
Q ss_pred HHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q 005487 359 VSSAENVFEKMS-KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIE 437 (694)
Q Consensus 359 ~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 437 (694)
+..+..++++.+ +.+..+.+.......+.|+++.|.+-|....+-|--.....|+..+ +..+.++...|.+...++++
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE 206 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH
Confidence 444444444444 2333333333333444555555555555444422111222333222 22344455555555555444
Q ss_pred hCCCC-------------C---------------hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChHHHHHHHHH
Q 005487 438 SKLET-------------N---------------EIVMGALLDMYAKCGAVDEAFKVFNELPE-----RDLVSWTSMIAA 484 (694)
Q Consensus 438 ~~~~~-------------~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~ 484 (694)
+|++. | ...+|.-...+.+.|+++.|.+.+-.|+. .|+++...+.-.
T Consensus 207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 43211 0 11233333446688999999999999986 577877766533
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHhh-hcCCH
Q 005487 485 YGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQ-PRNEHYSCLIDLLG-RAGRL 562 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~ 562 (694)
- ..+++....+-++-+...+ +--..||..++-.|++..-++-|..++.+=. ..... .+...|. |.+++. ..-..
T Consensus 287 n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~p 362 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAP 362 (459)
T ss_pred c-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCH
Confidence 2 2355666677777777653 2245799999999999998998887775322 00000 1122333 333333 34467
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHH-HHHHH-HcCC----HHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHH
Q 005487 563 QEAYGILQSTPEIREDAGLLSTL-FSACR-LHRD----IEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIR 636 (694)
Q Consensus 563 ~~A~~~~~~~~~~~p~~~~~~~l-~~~~~-~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 636 (694)
++|.+-++...+ .-..-+..+ +.... ++.+ ...|+.-++..+++- ..+....+++|.+..++..+++.|
T Consensus 363 Eea~KKL~~La~--~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 363 EEAFKKLDGLAG--MLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHH
Confidence 777766665431 000111111 11111 1111 334455555655543 235667788999999999999999
Q ss_pred HHHHh
Q 005487 637 LKMKE 641 (694)
Q Consensus 637 ~~~~~ 641 (694)
+.-.+
T Consensus 438 r~Sve 442 (459)
T KOG4340|consen 438 RKSVE 442 (459)
T ss_pred HHHHh
Confidence 86543
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=2.8e-08 Score=92.96 Aligned_cols=180 Identities=14% Similarity=0.038 Sum_probs=107.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-h---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-h---h
Q 005487 443 NEIVMGALLDMYAKCGAVDEAFKVFNELPE--RD-L---VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS-I---T 512 (694)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~---~ 512 (694)
....+...+..+...|++++|...|+.+.. |+ + .++..+..++...|++++|...++++.+. .|+. . .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555556666666666666666665544 22 1 24455566666666666666666666654 2321 1 2
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHH
Q 005487 513 FLALLSACSHA--------GWVDEGGYYFNLMISEYNIQPRNE-HYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLS 583 (694)
Q Consensus 513 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 583 (694)
+..+..++... |++++|.+.++.+... .|+.. .+..+.... ...... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH------------HHHHH
Confidence 33344444433 4556666666666532 33321 111111100 000000 00112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 584 TLFSACRLHRDIEMGEKIAKLLIEKDPDDS---STYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 584 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
.++..+...|++++|...++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456678889999999999999999987654 689999999999999999999999887644
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=5.7e-07 Score=80.25 Aligned_cols=341 Identities=16% Similarity=0.089 Sum_probs=192.4
Q ss_pred HHHHHHhhhcCCChHHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHhc
Q 005487 144 ASSTAGMYAKCNSFECAVKMFDEMSER---DVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTT-VISSCAR 219 (694)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~ 219 (694)
+.+.+..+++..++++|++++....++ +....+.|..+|.+..++..|-+.|+++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444456666777777776665543 3345666777777777777787777777653 455444432 2345556
Q ss_pred cCChhHHHHHHHHHHHhCCCCchh--HHHHHHHhhHhcCChHHHHHHHhcCCC-CChhHHHHHHHHHHcCCCchHHHHHH
Q 005487 220 LMDLDRGKEIHKEFIKDGFVSDSY--ISSALVDMYGKCGCLEMAREVFEQTVL-KSVVAWNALIAGYSSRGDSKSCVKLF 296 (694)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 296 (694)
.+.+..|..+...|.+. ++.. +...-....-..+++..+..+.++.+. .+..+.+.......+.|+++.|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 66777777777666542 1111 111112223456777888888887774 45555555555666888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----
Q 005487 297 WRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKT---- 372 (694)
Q Consensus 297 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 372 (694)
....+-|--.....|+..+.. .+.++.+.|.+...+++++|++..+..-. |...+... .+.+..+
T Consensus 168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh 236 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLH 236 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHH
Confidence 887776433334556555443 45677888888888888877653222110 00000000 0000000
Q ss_pred ---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHH
Q 005487 373 ---DVVYWNVMISGYVTVGDYFKALAIYSDMKEV-GAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMG 448 (694)
Q Consensus 373 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (694)
-+..+|.-...+.+.|+++.|.+.+..|.-+ ....|++|...+.-. ...+++....+-+.-+...+ |....+|.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 0123444444556777888887777776432 124466666554332 22344445555555555554 35667788
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005487 449 ALLDMYAKCGAVDEAFKVFNELPE-----RDLVSWTSMIAAYGSHGRALEALKLFGEMQ 502 (694)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (694)
.++-.|+++.-++-|-.++-+-.. .+...|+.|=......-.+++|.+-++.+.
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888888766554 233344433222233345566555554443
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=1.1e-08 Score=86.11 Aligned_cols=93 Identities=5% Similarity=-0.158 Sum_probs=54.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC
Q 005487 549 YSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK 627 (694)
Q Consensus 549 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 627 (694)
+..++..+...|++++|...++.+....| +...|..++.++...|++++|...++++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 33445555556666666666665555444 34455555555666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHh
Q 005487 628 KWDEVRKIRLKMKE 641 (694)
Q Consensus 628 ~~~~A~~~~~~~~~ 641 (694)
++++|+..+++...
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665544
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=6.5e-08 Score=91.46 Aligned_cols=229 Identities=13% Similarity=0.081 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHcccC
Q 005487 345 INSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTF-TSVLPACSQLA 423 (694)
Q Consensus 345 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~ 423 (694)
....+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++....+..++..++ ......+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 33445677777888776665555544555555555554444435555666666555444333233333 33334567789
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChHHHHHHHHHHH----hcCCHHHHHHHH
Q 005487 424 ALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-RDLVSWTSMIAAYG----SHGRALEALKLF 498 (694)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~A~~~~ 498 (694)
+++.|.+++... .+.......+.+|.+.++++.|.+.++.|.+ .+-.+...++.++. -.+.+.+|..+|
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 999998887542 3556666788999999999999999999987 22333444444333 234699999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCH-HHHHHHHHhCCCCC
Q 005487 499 GEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRL-QEAYGILQSTPEIR 576 (694)
Q Consensus 499 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 576 (694)
+++.+. ..+++.+.+.++.++...|++++|..++.+.. ...|+ +.++..++.+....|+. +.+.+++.++....
T Consensus 191 ~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 191 EELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 998775 56788999999999999999999999999987 33444 66778888888888887 77888999888777
Q ss_pred CCHHHHH
Q 005487 577 EDAGLLS 583 (694)
Q Consensus 577 p~~~~~~ 583 (694)
|+.....
T Consensus 267 p~h~~~~ 273 (290)
T PF04733_consen 267 PNHPLVK 273 (290)
T ss_dssp TTSHHHH
T ss_pred CCChHHH
Confidence 7655443
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.94 E-value=7.9e-08 Score=85.75 Aligned_cols=149 Identities=9% Similarity=0.073 Sum_probs=115.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCC
Q 005487 482 IAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGR 561 (694)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 561 (694)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457788888776444332221 11 0 122356678888888877732 23457789999999999999
Q ss_pred HHHHHHHHHhCCCCCCC-HHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHH
Q 005487 562 LQEAYGILQSTPEIRED-AGLLSTLFSAC-RLHRD--IEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRL 637 (694)
Q Consensus 562 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 637 (694)
+++|...++++.+..|+ ...+..++.++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998887775 56777777764 66676 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 005487 638 KMKELGL 644 (694)
Q Consensus 638 ~~~~~~~ 644 (694)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987665
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=2.8e-06 Score=85.32 Aligned_cols=260 Identities=12% Similarity=-0.016 Sum_probs=143.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005487 382 SGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTS---VLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCG 458 (694)
Q Consensus 382 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (694)
..+...|++++|...+++..+.. +.+...+.. ........+....+.+.+... ....+........+..++...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 34556677777777777776652 222223221 111112234444444444331 1111222334445566777788
Q ss_pred ChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHccCCHHHHHHH
Q 005487 459 AVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNA-RPDS--ITFLALLSACSHAGWVDEGGYY 532 (694)
Q Consensus 459 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~ 532 (694)
++++|...++.... .+...+..+..++...|++++|...+++...... .|+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888887765 3445677777788888888888888887776421 1222 2344566777888888888888
Q ss_pred HHHhHHhcCCCCChHHH-H--HHHHHhhhcCCHHHHHHH--H-HhCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005487 533 FNLMISEYNIQPRNEHY-S--CLIDLLGRAGRLQEAYGI--L-QSTPEIRE---DAGLLSTLFSACRLHRDIEMGEKIAK 603 (694)
Q Consensus 533 ~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~ 603 (694)
++.+.......+..... . .+...+...|..+.+.+. + .......+ ..........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88775221111111111 1 222333333422222222 1 11110101 11222245556667788888888887
Q ss_pred HHHhcCC---------CCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 604 LLIEKDP---------DDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 604 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
.+....- .........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7764321 133455667778899999999999998876544
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=6.8e-08 Score=94.30 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=161.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 005487 384 YVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEA 463 (694)
Q Consensus 384 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (694)
+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.+ +.+......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345555555555555555542 2234455555555555555555666666555544 33455555666666666666666
Q ss_pred HHHHhhCCCCChH-HHHHHH---------HHHHhcCCHHHHHHHHHHH-HHcCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 005487 464 FKVFNELPERDLV-SWTSMI---------AAYGSHGRALEALKLFGEM-QQSNARPDSITFLALLSACSHAGWVDEGGYY 532 (694)
Q Consensus 464 ~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 532 (694)
+..++......+. .|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|.++.|+..
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 6666554321000 000000 0111112233344444444 4444447888888888889999999999999
Q ss_pred HHHhHHhcCCCCCh-HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 533 FNLMISEYNIQPRN-EHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 533 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
|+.++ .++|+- .+|+.|+..+....+.++|+..|.++.+++|.. ..+..++..|...|.+++|...|-.++.+.+
T Consensus 453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99998 567874 589999999999999999999999999999985 5788999999999999999999999998765
Q ss_pred C-----C-----CccHHHHHHHHhhcCChHHHHH
Q 005487 611 D-----D-----SSTYIVLSNMYASVKKWDEVRK 634 (694)
Q Consensus 611 ~-----~-----~~~~~~l~~~~~~~g~~~~A~~ 634 (694)
. . ..+|..|=.++...++.|-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 4 1 1366666666777777664443
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=3.6e-08 Score=98.66 Aligned_cols=260 Identities=12% Similarity=0.004 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHH
Q 005487 406 KPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDLVSWTSMIA 483 (694)
Q Consensus 406 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 483 (694)
+|-...-..+...+.+.|-...|..+++++. .+..++.+|...|+..+|..+.....+ |++..|-.++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 4444444556667778888889999888763 355688899999999999888766555 77788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCH
Q 005487 484 AYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRL 562 (694)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 562 (694)
......-+++|.++.+..... .-..+.......+++.++.+.|+.-. .+.|- ..+|..++-+..+.++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 877777788888888765432 11122222344789999999999877 34454 66899999999999999
Q ss_pred HHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 563 QEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 563 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
..|.+.|......+|+ ...|+++..+|.+.|+..+|...++++++.+-++..+|.+..-+....|.|++|.+.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999999988887 468999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccCCceeEEEE-CCEEEEEEeCCCCCCChHHHHHHHHHHHHHh
Q 005487 642 LGLRKNPGCSWIEI-GDRIQPFFAEDKFYPQADMVYECLAILAGHM 686 (694)
Q Consensus 642 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (694)
....+..+.....+ -.++..+. |..-+++...+.+.+++.++.
T Consensus 616 ~~~~~~d~~vl~~iv~~~~~~~~--d~s~de~~~~k~~~kelmg~~ 659 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTVLEGMT--DESGDEATGLKGKLKELLGKV 659 (777)
T ss_pred hhhhcccchhhHHHHHHHHhhcc--ccccchhhhhhHHHHHHHHHH
Confidence 55444321111111 00111111 445556666666666555444
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.91 E-value=3.5e-08 Score=80.96 Aligned_cols=97 Identities=8% Similarity=-0.088 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHh
Q 005487 546 NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYA 624 (694)
Q Consensus 546 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 624 (694)
.+....++..+...|++++|.++|+-.....|. ...|..|+.++...|++++|+..|.+++.++|+||.++.+++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 456677888899999999999999998777774 6789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 005487 625 SVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 625 ~~g~~~~A~~~~~~~~~~ 642 (694)
..|+.+.|++.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=2.5e-08 Score=84.01 Aligned_cols=124 Identities=10% Similarity=0.013 Sum_probs=103.4
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 005487 495 LKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTP 573 (694)
Q Consensus 495 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 573 (694)
..++++.++. .|+. +..+...+...|++++|...|+.+. .+.|+ ...+..++.++.+.|++++|...|+++.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456666664 4543 5556778889999999999999988 44554 6688899999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Q 005487 574 EIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS 625 (694)
Q Consensus 574 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 625 (694)
+..| ++..+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8777 467888999999999999999999999999999999999888877654
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=5.8e-06 Score=83.07 Aligned_cols=268 Identities=12% Similarity=0.062 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHH-HHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHH---
Q 005487 375 VYWNVMISGYVTVGDYFKALAIYSDMKEVGA-KPDAVTFT-SVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGA--- 449 (694)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 449 (694)
..|..+...+...|+.+.+...+....+... .++..... .....+...|+++.|..+++.+.+.. |.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 4556666667777777777666666554321 22322222 22334567899999999999988764 334444331
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 005487 450 LLDMYAKCGAVDEAFKVFNELPE--RD-LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWV 526 (694)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 526 (694)
........+..+.+.+.+..... |+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 22222335666777777765333 22 2345566778899999999999999999974 44567788888899999999
Q ss_pred HHHHHHHHHhHHhcCCCCCh--HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHH----H--HHHHHHHHcCCHHHH
Q 005487 527 DEGGYYFNLMISEYNIQPRN--EHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLL----S--TLFSACRLHRDIEMG 598 (694)
Q Consensus 527 ~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~--~l~~~~~~~~~~~~A 598 (694)
++|..++++........|+. ..|..++..+...|++++|+.+++++....|....+ . .+...+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999988432222332 346678999999999999999999976444421111 1 223333445544433
Q ss_pred HHH---HHHHHhcCCCCCc--cHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 599 EKI---AKLLIEKDPDDSS--TYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 599 ~~~---~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
... ........|.... .-...+.++...|+.++|...++.+.....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 333 2222111122112 223567778889999999999998866443
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=2.6e-07 Score=81.54 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhh
Q 005487 479 TSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGR 558 (694)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 558 (694)
..+...+...|+-+....+..+..... +.+.......+....+.|++..|+..++++.. .-++|.+.|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 556677778888888888877765431 34556666678888889999999999998873 445668889999999999
Q ss_pred cCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHH
Q 005487 559 AGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRL 637 (694)
Q Consensus 559 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 637 (694)
.|+.++|..-|.++.++.|+ +...+.++..+.-.||++.|+.++..+....+.++.+-.+|+.+....|++++|.++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999988886664 66788899999999999999999999988888899999999999999999999977765
Q ss_pred H
Q 005487 638 K 638 (694)
Q Consensus 638 ~ 638 (694)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=3e-07 Score=98.45 Aligned_cols=202 Identities=17% Similarity=0.176 Sum_probs=173.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-C-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 005487 441 ETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-R-------DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSIT 512 (694)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 512 (694)
|.+...|-..+.-....++.+.|+++.++++. - -...|.+++......|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 45566777888888889999999999988876 1 2347888888888889889999999999984 223467
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC---HHHHHHHHHHH
Q 005487 513 FLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED---AGLLSTLFSAC 589 (694)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~ 589 (694)
|..|...|.+.+.+++|.++++.|.++++ .....|..+++.+.++.+-+.|..++.++.+.-|. ..+....+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888899999999999999999998766 66778999999999999999999999998875554 35667777788
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 005487 590 RLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRK 646 (694)
Q Consensus 590 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 646 (694)
.+.||.++++.+|+..+.-.|.-...|..+++.-.+.|+.+.++++|+++...++..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999888743
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=2.4e-07 Score=98.04 Aligned_cols=161 Identities=10% Similarity=0.039 Sum_probs=112.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 005487 473 RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD-SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYS 550 (694)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 550 (694)
.++..+..|..+..+.|++++|..+++...+. .|+ ......++..+.+.+++++|...+++.. ...|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHH
Confidence 34667777888888888888888888888874 565 4666777778888888888888888877 34565 44566
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCCh
Q 005487 551 CLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKW 629 (694)
Q Consensus 551 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 629 (694)
.++.++.+.|++++|..+|+++....|+ ...+..++..+...|+.++|...|+++++...+-...|..+. ++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHH
Confidence 7778888888888888888887754544 567777788888888888888888888877654333333322 233
Q ss_pred HHHHHHHHHHHhCCC
Q 005487 630 DEVRKIRLKMKELGL 644 (694)
Q Consensus 630 ~~A~~~~~~~~~~~~ 644 (694)
..-...++++.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 233 NADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHcCcccc
Confidence 444555665544443
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=0.0001 Score=71.96 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHh
Q 005487 390 YFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLET-NEIVMGALLDMYAKCGAVDEAFKVFN 468 (694)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (694)
.+.....+.++...-..--..+|..+++...+..-+..|..+|.++.+.+..+ .+.+..++++-|+ .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45555566665543222223456677777777788888888888888776665 6677777777665 577888888888
Q ss_pred hCCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 005487 469 ELPE--R-DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS--ITFLALLSACSHAGWVDEGGYYFNLMISEY 540 (694)
Q Consensus 469 ~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 540 (694)
.-.+ + ++.-....+.-+...++-..|..+|++....++.|+. ..|..++.-=..-|++..+.++-+++...+
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 7665 3 3444456677777888888888888888887666653 678888887777788888888777765443
No 115
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=9.7e-07 Score=84.67 Aligned_cols=212 Identities=9% Similarity=0.040 Sum_probs=138.2
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCH--HHHHH
Q 005487 423 AALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCG-AVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRA--LEALK 496 (694)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~ 496 (694)
+..+.|......++... +-+..+|+....++...| ++++++..++.+.. .+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34445555555555443 223334444444445555 46777777776655 3344566555555555553 56778
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhc---CC----HHHHHHH
Q 005487 497 LFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRA---GR----LQEAYGI 568 (694)
Q Consensus 497 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~----~~~A~~~ 568 (694)
+++++++.. +-|..+|.....++...|+++++++.++++++. .|+ ...|+..+.++.+. |. .++++.+
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 888887754 345677877777788888888888888888732 333 44666666555444 22 2567777
Q ss_pred HHhCCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC----------------
Q 005487 569 LQSTPEIRE-DAGLLSTLFSACRLH----RDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK---------------- 627 (694)
Q Consensus 569 ~~~~~~~~p-~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 627 (694)
..++....| +...|..+...+... ++..+|...+.+++..+|+++.+...|+++|....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 767666666 457888888887763 34567888899998889999999999999998743
Q ss_pred --ChHHHHHHHHHH
Q 005487 628 --KWDEVRKIRLKM 639 (694)
Q Consensus 628 --~~~~A~~~~~~~ 639 (694)
..++|.++++.+
T Consensus 286 ~~~~~~a~~~~~~l 299 (320)
T PLN02789 286 LSDSTLAQAVCSEL 299 (320)
T ss_pred cccHHHHHHHHHHH
Confidence 236677777776
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=5.8e-06 Score=94.38 Aligned_cols=324 Identities=12% Similarity=0.025 Sum_probs=184.1
Q ss_pred ccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CC----C----hhHHHHHHHHHHhc
Q 005487 320 RSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMS----KT----D----VVYWNVMISGYVTV 387 (694)
Q Consensus 320 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~----~----~~~~~~l~~~~~~~ 387 (694)
..|+.+.+...+..+.......+..........+...|+++++...+.... .. + ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555554443211111122223334445556677777777665432 11 1 01112233445567
Q ss_pred CChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHcccCChHHHHHHHHHHHHh----CCC-CChhHHHHHHHHHHhcC
Q 005487 388 GDYFKALAIYSDMKEVGAKPDA----VTFTSVLPACSQLAALEKGKEIHNHIIES----KLE-TNEIVMGALLDMYAKCG 458 (694)
Q Consensus 388 ~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g 458 (694)
|++++|...+++....-...+. .....+...+...|+++.|...+.+.... +.. ........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 8888888888776653111111 22344445566788888888887776542 111 11234445566777788
Q ss_pred ChHHHHHHHhhCCC-------CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HhhHHHHHHHHHcc
Q 005487 459 AVDEAFKVFNELPE-------RD----LVSWTSMIAAYGSHGRALEALKLFGEMQQSN--ARPD--SITFLALLSACSHA 523 (694)
Q Consensus 459 ~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~ 523 (694)
++++|...+++... ++ ...+..+...+...|++++|...+++..... ..+. ...+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 88888887765443 11 1234445566677788888888887765431 1121 23344455567778
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHhhhcCCHHHHHHHHHhCCCCCCC-H----HHHHHHHHHHHHcC
Q 005487 524 GWVDEGGYYFNLMISEYNIQPRNEHY-----SCLIDLLGRAGRLQEAYGILQSTPEIRED-A----GLLSTLFSACRLHR 593 (694)
Q Consensus 524 g~~~~A~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~----~~~~~l~~~~~~~~ 593 (694)
|++++|...+..+..-.........+ ......+...|+.+.|..++.......+. . ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 88888888887775321111111111 11224445578888888888775532111 1 11345566677788
Q ss_pred CHHHHHHHHHHHHhcCCC------CCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 594 DIEMGEKIAKLLIEKDPD------DSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 594 ~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
+.++|...+++++..... ...++..++.++...|+.++|...+.+..+..
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888765321 22356677888888888888888888876544
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=2.4e-07 Score=93.03 Aligned_cols=225 Identities=17% Similarity=0.137 Sum_probs=182.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 005487 439 KLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLS 518 (694)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 518 (694)
+.+|--..-..+...+...|-..+|..+|+++. .|...+..|...|+..+|..+..+..++ +|++..|..++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 445666666778899999999999999999854 6777888999999999999999998884 789999999998
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 005487 519 ACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEM 597 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 597 (694)
......-+++|.++.+..-.. .-..++....+.++++++.+.++...+.+|- ..+|..++.+..+.+++..
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888888998888866422 2233445555689999999999998877774 6789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCC-CCCChHHHH
Q 005487 598 GEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNPGCSWIEIGDRIQPFFAEDK-FYPQADMVY 676 (694)
Q Consensus 598 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 676 (694)
|...|...+.++|++...|+++..+|.+.|+..+|...+++..+.. ..+-.-|- + +..++-|- ..+++...|
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWE---N--ymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWE---N--YMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeee---c--hhhhhhhcccHHHHHHHH
Confidence 9999999999999999999999999999999999999999988766 22222222 1 23345553 348889999
Q ss_pred HHHHHHHHH
Q 005487 677 ECLAILAGH 685 (694)
Q Consensus 677 ~~~~~~~~~ 685 (694)
.++.++..+
T Consensus 611 ~rll~~~~~ 619 (777)
T KOG1128|consen 611 HRLLDLRKK 619 (777)
T ss_pred HHHHHhhhh
Confidence 998877654
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=3.8e-05 Score=87.77 Aligned_cols=365 Identities=12% Similarity=0.004 Sum_probs=226.6
Q ss_pred HHHHHhhHhcCChHHHHHHHhcCCCCChhH--HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 005487 246 SALVDMYGKCGCLEMAREVFEQTVLKSVVA--WNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQ 323 (694)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 323 (694)
......+...|++.+|.............. ...........|++..+...+..+.......+..........+...|+
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 334455666777777776666554432211 111223445567777777776665322111122222333444567788
Q ss_pred hhhhHHHHHHHHHhcCC------C--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----hHHHHHHHHHHhc
Q 005487 324 LKHGKVMHGYIIRNKIQ------G--DVFINSSLIDLYFKCGRVSSAENVFEKMSK----TDV----VYWNVMISGYVTV 387 (694)
Q Consensus 324 ~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~ 387 (694)
++.+...+......-.. + .......+...+...|++++|...++.... .+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 99988888776543111 1 111222334556778999999998887542 221 2345566677889
Q ss_pred CChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHcccCChHHHHHHHHHHHHh----CCCC---ChhHHHHHHHHHH
Q 005487 388 GDYFKALAIYSDMKEVGA---KP--DAVTFTSVLPACSQLAALEKGKEIHNHIIES----KLET---NEIVMGALLDMYA 455 (694)
Q Consensus 388 ~~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~ 455 (694)
|++++|...+.+.....- .+ ...+...+...+...|+++.|...+++.... +... ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999988765311 11 1234445566778899999999998877542 2211 1233445666777
Q ss_pred hcCChHHHHHHHhhCCC------C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHh--hH--HHHHHHHH
Q 005487 456 KCGAVDEAFKVFNELPE------R--DLVSWTSMIAAYGSHGRALEALKLFGEMQQSN--ARPDSI--TF--LALLSACS 521 (694)
Q Consensus 456 ~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~ 521 (694)
..|++++|...++.... + ....+..+...+...|+++.|...+++..... ...... .. ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 88999999998887644 1 12345556778889999999999998885421 111110 11 11123445
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHhhhcCCHHHHHHHHHhCCCC------CCC-HHHHHHHHHHHH
Q 005487 522 HAGWVDEGGYYFNLMISEYNIQPRN----EHYSCLIDLLGRAGRLQEAYGILQSTPEI------RED-AGLLSTLFSACR 590 (694)
Q Consensus 522 ~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~-~~~~~~l~~~~~ 590 (694)
..|+.+.|...+...... . .... ..+..++.++...|++++|...++++... ..+ ......++.++.
T Consensus 665 ~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 578999999998776521 1 1111 12356788899999999999999987641 111 234556677888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC
Q 005487 591 LHRDIEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 591 ~~~~~~~A~~~~~~~~~~~p~~ 612 (694)
..|+.++|...+.+++++....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999987543
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=1.1e-06 Score=78.55 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=118.0
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 005487 451 LDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGG 530 (694)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 530 (694)
+..|...|+++......+.+..+. ..+...++.+++...+++....+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777776654443332221 01223567788888888888764 556888999999999999999999
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHh-hhcCC--HHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005487 531 YYFNLMISEYNIQPR-NEHYSCLIDLL-GRAGR--LQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLL 605 (694)
Q Consensus 531 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 605 (694)
..|+++. .+.|+ ...+..++.++ ...|+ .++|.++++++.+..|+ ...+..++..+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998 44564 66778888864 67777 59999999999987775 578888888999999999999999999
Q ss_pred HhcCCCCCccHH
Q 005487 606 IEKDPDDSSTYI 617 (694)
Q Consensus 606 ~~~~p~~~~~~~ 617 (694)
++.+|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988665443
No 120
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=1.6e-06 Score=83.26 Aligned_cols=189 Identities=11% Similarity=0.077 Sum_probs=144.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCC---ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC--
Q 005487 452 DMYAKCGAVDEAFKVFNELPER---DLVSWTSMIAAYGSHG-RALEALKLFGEMQQSNARPDSITFLALLSACSHAGW-- 525 (694)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-- 525 (694)
.++...+..++|+.+.+.+... +..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 3345567889999999988773 3346777777777777 6899999999999874 3455667766656666665
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHc---CC----HH
Q 005487 526 VDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLH---RD----IE 596 (694)
Q Consensus 526 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~----~~ 596 (694)
.+++..+++++. ...|. ..+|...+.++.+.|++++|++.++++.+..| +...|+....+.... |. .+
T Consensus 124 ~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 367889998888 34554 66888889999999999999999999988666 466787777665543 22 35
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHhhc----CChHHHHHHHHHHHhCCC
Q 005487 597 MGEKIAKLLIEKDPDDSSTYIVLSNMYASV----KKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 597 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 644 (694)
.+..+..+++..+|+|..+|..++.++... ++..+|.+.+.+..+.++
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 788888999999999999999999999883 456778888887766443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=1.3e-06 Score=77.32 Aligned_cols=135 Identities=14% Similarity=0.047 Sum_probs=115.4
Q ss_pred CCC-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHH
Q 005487 507 RPD-SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLST 584 (694)
Q Consensus 507 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 584 (694)
.|+ ... ..+...+...|+-+....+...... ....+......++....+.|++.+|...++++....| |...|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 454 444 6667788888999999888887652 2334455666799999999999999999999888554 6789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 585 LFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 585 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
++.+|-+.|+++.|...+.+++++.|+++.++.+++..|.-.|++++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876654
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=1.3e-06 Score=81.78 Aligned_cols=183 Identities=15% Similarity=0.041 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hH---HH
Q 005487 407 PDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLET--NEIVMGALLDMYAKCGAVDEAFKVFNELPE--RD-LV---SW 478 (694)
Q Consensus 407 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~ 478 (694)
.....+..+...+...|+++.|...++++....... ....+..+..++...|++++|...++.+.+ |+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 355677788888999999999999999998765321 124667789999999999999999999876 32 22 46
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 005487 479 TSMIAAYGSH--------GRALEALKLFGEMQQSNARPDS-ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHY 549 (694)
Q Consensus 479 ~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 549 (694)
..+..++... |+++.|.+.++++... .|+. .....+..... .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HHH
Confidence 6666677655 7899999999999986 4553 22222211100 00 0000 112
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 550 SCLIDLLGRAGRLQEAYGILQSTPEIRED----AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
..++..+.+.|++++|+..++++.+..|+ ...+..++.++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35677888999999999999987764443 46788888899999999999998888776655
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=6.1e-06 Score=87.57 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 005487 439 KLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RD-LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLA 515 (694)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 515 (694)
.++.+...+..|..+..+.|.+++|..+++.+.. |+ ...+..++.++.+.+++++|+...++..... +.+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4566788888999999999999999999999887 54 4477888999999999999999999999863 334567777
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 005487 516 LLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPE 574 (694)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 574 (694)
+..++.+.|++++|..+|+++.. -.|+ ...+..++.++...|+.++|...|+++.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78889999999999999999984 2444 67888999999999999999999999875
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=8.4e-06 Score=78.68 Aligned_cols=149 Identities=17% Similarity=0.044 Sum_probs=111.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 005487 474 DLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS-ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSC 551 (694)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 551 (694)
....+......+...|+++.|+..++.++.. .|+. .........+.+.++.++|.+.++++. ...|+ ......
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHH
Confidence 3445555556667778888999999888876 4554 444445557888889999999998888 44666 445567
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChH
Q 005487 552 LIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWD 630 (694)
Q Consensus 552 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 630 (694)
++++|.+.|++.+|+.+++......| ++..|..|..+|...|+..+|... .+..|.-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 78888899999999988888766444 678888888888888888776554 455677788999
Q ss_pred HHHHHHHHHHhCCC
Q 005487 631 EVRKIRLKMKELGL 644 (694)
Q Consensus 631 ~A~~~~~~~~~~~~ 644 (694)
+|+..+....++.-
T Consensus 443 ~A~~~l~~A~~~~~ 456 (484)
T COG4783 443 QAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHHhcc
Confidence 99988888876653
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.0011 Score=69.12 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 005487 477 SWTSMIAAYGSHGRAL---EALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLI 553 (694)
Q Consensus 477 ~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 553 (694)
+.+.|+..+.+.++.. +|+-+++...... +.|..+-..+++.|.-.|-+..|...|+.+--+ .+.-|.-.| .+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh-~~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGH-LIF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchH-HHH
Confidence 4567888888888765 4566666666653 456777788889999999999999999988533 555554433 234
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C---CccHHHHHHHHhhcCC
Q 005487 554 DLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD-D---SSTYIVLSNMYASVKK 628 (694)
Q Consensus 554 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~---~~~~~~l~~~~~~~g~ 628 (694)
..+...|++..+...+....++-. +..-...++....+.|.+.+-.++..---.++-. . ..+-......+...++
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 566677888888888877655222 2222223334444778887776665443333211 1 1122234555677788
Q ss_pred hHHHHHHHHHHH
Q 005487 629 WDEVRKIRLKMK 640 (694)
Q Consensus 629 ~~~A~~~~~~~~ 640 (694)
.+.-...+.-|.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 877777777665
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=5.7e-07 Score=75.69 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=77.6
Q ss_pred CCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHH
Q 005487 541 NIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIV 618 (694)
Q Consensus 541 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 618 (694)
...|+ ......++..+...|++++|.+.++.+....| +...|..++..+...|++++|...++++++.+|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34454 34556677777778888888888877766445 45677777777878888888888888888888888888888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 619 LSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 619 l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
++.+|...|++++|.+.+++..+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 8888888888888888888776544
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=2e-05 Score=76.22 Aligned_cols=177 Identities=18% Similarity=0.110 Sum_probs=130.3
Q ss_pred ChHHHHHHHhhCCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 005487 459 AVDEAFKVFNELPE------RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYY 532 (694)
Q Consensus 459 ~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 532 (694)
++.++...-+.++. ++...+...+.+.........+...+-+..+ +-...........+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 44555555555554 4555566665554443333333333322222 11222333334456677999999999
Q ss_pred HHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 533 FNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 533 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
++.+.+. .|+ +..+...++.+.+.|+.++|.+.++++....|+ ...+..++.++.+.|+..+|+..++..+..+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999843 565 445567789999999999999999999988887 56778899999999999999999999999999
Q ss_pred CCCccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 611 DDSSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 611 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
+|+..|..|+.+|..+|+..+|....-+...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999888766543
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=9.7e-06 Score=71.09 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=112.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 005487 447 MGALLDMYAKCGAVDEAFKVFNELPE--RDL-VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHA 523 (694)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 523 (694)
+..++-+....|+.+-|...++.+.. |+. ..-..-...+-..|++++|+++++.+.+.+ +.|..++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444555566677777776666554 222 122222233445677888888888888764 44566666666666677
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHc---CCHHHHH
Q 005487 524 GWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLH---RDIEMGE 599 (694)
Q Consensus 524 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---~~~~~A~ 599 (694)
|+.-+|++-+....+ .+..|.+.|..+.+.|...|++++|.-.++++.-.+|- +..+..++..+.-. .++..|.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788887777774 45667788888888888888888888888887656664 44555666554433 3777888
Q ss_pred HHHHHHHhcCCCCCccHHHH
Q 005487 600 KIAKLLIEKDPDDSSTYIVL 619 (694)
Q Consensus 600 ~~~~~~~~~~p~~~~~~~~l 619 (694)
.++.++++++|.+...+.-+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 88888888888665554443
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=1.2e-05 Score=86.83 Aligned_cols=233 Identities=13% Similarity=0.120 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHHHHcccCChHHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCh-HHHH
Q 005487 406 KPDAVTFTSVLPACSQLAALEKGKEIHNHIIES-KLET---NEIVMGALLDMYAKCGAVDEAFKVFNELPE-RDL-VSWT 479 (694)
Q Consensus 406 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~ 479 (694)
+.....|...|.-....++.+.|+++.++++.. ++.- -..+|.++++....-|.-+...++|+++.+ -|+ ..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334567888888888999999999999988753 2221 245677888888888888999999999888 444 4788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhc
Q 005487 480 SMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRA 559 (694)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 559 (694)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.++++...-.-........+.+-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999987 454567888889999999999999999999984321111244556667788899
Q ss_pred CCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCccHH-HHHHHHhhcCChHHHHHH
Q 005487 560 GRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKD--PDDSSTYI-VLSNMYASVKKWDEVRKI 635 (694)
Q Consensus 560 g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~-~l~~~~~~~g~~~~A~~~ 635 (694)
|+.+.+..+|+......| ..+.|+.++..-.++|+.+.++.+|++++.+. |......+ .+...-...|+-+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999998776555 57899999999999999999999999999876 54444433 344444445666655555
Q ss_pred HHHH
Q 005487 636 RLKM 639 (694)
Q Consensus 636 ~~~~ 639 (694)
-.++
T Consensus 1694 KarA 1697 (1710)
T KOG1070|consen 1694 KARA 1697 (1710)
T ss_pred HHHH
Confidence 4444
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=7.5e-06 Score=71.77 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 005487 477 SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLAL-LSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLID 554 (694)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 554 (694)
.|..++-+....|+.+.|...++++... + |++.-...+ ..-+...|++++|+++++.++.+ .|+ ..++..-+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 4566677778889999999999999887 3 554333322 33466789999999999999943 454 456666666
Q ss_pred HhhhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC---ChH
Q 005487 555 LLGRAGRLQEAYGILQSTPE-IREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK---KWD 630 (694)
Q Consensus 555 ~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 630 (694)
+.-.+|+.-+|++-+....+ +..|...|..+...|...|++++|.-.+++++-..|.++..+..++++++-+| +.+
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 77778888899988887665 66789999999999999999999999999999999999999999999988876 556
Q ss_pred HHHHHHHHHHhCCC
Q 005487 631 EVRKIRLKMKELGL 644 (694)
Q Consensus 631 ~A~~~~~~~~~~~~ 644 (694)
-|.+++.+..+...
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 68888888776655
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.0001 Score=65.42 Aligned_cols=251 Identities=20% Similarity=0.163 Sum_probs=129.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHH
Q 005487 351 DLYFKCGRVSSAENVFEKMSK--TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKG 428 (694)
Q Consensus 351 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 428 (694)
+-+.-.|.+..++..-..... .++..-.-+.++|...|.+...+.- +.. |-.|....+..+.......++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHH
Confidence 344445666666554443332 2333334455666666665433221 111 2233444444444444444443333
Q ss_pred H-HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005487 429 K-EIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNAR 507 (694)
Q Consensus 429 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 507 (694)
. ++.+.+.......+......-+..|...|++++|++.......-... ..=...+.+..+.+.|...+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAA--ALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3 23333433333333333333445577777888887777763322222 22234455566777777777777763
Q ss_pred CCHhhHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHH
Q 005487 508 PDSITFLALLSACSH----AGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLL 582 (694)
Q Consensus 508 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 582 (694)
.+..+.+.|..++.+ .+.+.+|.-+|+++-. ...|++.+.+..+.+....|++++|..+++.+....+ ++.++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 355666666665543 2456667777777652 2456666666666666666777777776666554333 44555
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCCC
Q 005487 583 STLFSACRLHR-DIEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 583 ~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~ 612 (694)
..++......| +.+.-.+.+.++....|.+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 55544444444 3344445555555555554
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=1.9e-05 Score=84.56 Aligned_cols=218 Identities=12% Similarity=0.116 Sum_probs=151.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 005487 371 KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTF-TSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGA 449 (694)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (694)
..+...+..|+..+...+++++|.++.+...+. .|+...+ ..+...+.+.++...+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 346678889999999999999999999977665 4554433 2333345555554444433 2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 005487 450 LLDMYAKCGAVDEAFKVFNELPE--RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVD 527 (694)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 527 (694)
++.......++.....+...+.. .+..++..++.+|-+.|+.++|..+|+++.+.. +-|+...+.+...+... +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22333333334333333333333 334477888999999999999999999999875 44678899999888888 999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH---------------------HHHHHHH
Q 005487 528 EGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA---------------------GLLSTLF 586 (694)
Q Consensus 528 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------------------~~~~~l~ 586 (694)
+|.+++.++... +...+++.++.++++++....|+. ..+.-+.
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999999888732 444456666666666665544431 2233334
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Q 005487 587 SACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS 625 (694)
Q Consensus 587 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 625 (694)
..|...++++++..+++.+++.+|.|..+...++.+|..
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 556677899999999999999999999999999998874
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=3.2e-06 Score=82.69 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHH
Q 005487 511 ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSAC 589 (694)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 589 (694)
.....++..+...++++.|+.+++++.+. .|+ ....+++++...++-.+|++++.+..+..| +...+...+..+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455566667778888888888888732 354 344577888888888888888888776555 566777777788
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 590 RLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 590 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
...++++.|..+.+++++..|.+..+|..|+.+|...|++++|+-.+.-+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 889999999999999999999999999999999999999999998887664
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=5.8e-06 Score=70.10 Aligned_cols=115 Identities=16% Similarity=0.077 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHcCCHHH
Q 005487 523 AGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA----GLLSTLFSACRLHRDIEM 597 (694)
Q Consensus 523 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~ 597 (694)
.++...+...++.+.++++-.|- ......++..+...|++++|...|+.+....|++ .....++..+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34445555555555433211111 1122334455555555555555555544433332 122334444555555555
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 598 GEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 598 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
|+..++. +...+-.+..+..+|++|.+.|++++|...|++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555544 222233444555566666666666666666554
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.0025 Score=62.70 Aligned_cols=78 Identities=10% Similarity=0.167 Sum_probs=57.0
Q ss_pred CCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCC--CChhHHHHHHH
Q 005487 204 QPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVL--KSVVAWNALIA 281 (694)
Q Consensus 204 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 281 (694)
+-|..+|..|++-+... -.+++++.++++... ++..+..|..-+..-.+..+++..+++|.+... -+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45677888888777655 788888888888765 455667788888888888888888888877543 25666666665
Q ss_pred HH
Q 005487 282 GY 283 (694)
Q Consensus 282 ~~ 283 (694)
.-
T Consensus 95 YV 96 (656)
T KOG1914|consen 95 YV 96 (656)
T ss_pred HH
Confidence 43
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=6.7e-06 Score=69.14 Aligned_cols=116 Identities=14% Similarity=0.025 Sum_probs=89.1
Q ss_pred HHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 005487 497 LFGEMQQSNARPD-SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEI 575 (694)
Q Consensus 497 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 575 (694)
.++++... .|+ ......+...+...|++++|...++.+... .+.+...+..++..+...|++++|...++++.+.
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556654 443 455666777888889999999999888732 1334667888889999999999999999887765
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccH
Q 005487 576 RED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTY 616 (694)
Q Consensus 576 ~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 616 (694)
.|+ ...+..++..+...|++++|...++++++.+|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 554 56777888888889999999999999999999876543
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=2.9e-06 Score=76.62 Aligned_cols=103 Identities=18% Similarity=0.085 Sum_probs=77.3
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCChHH-HHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCC
Q 005487 517 LSACSHAGWVDEGGYYFNLMISEYNIQPRNEH-YSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRD 594 (694)
Q Consensus 517 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 594 (694)
..-+.+.+++.+|+..|.+++ .+.|+..+ |..-+.+|.+.|.++.|++-.+.+++++|. ...|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 445667788888888888888 56666544 445577888888888888888888777776 4578888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 005487 595 IEMGEKIAKLLIEKDPDDSSTYIVLSNM 622 (694)
Q Consensus 595 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 622 (694)
+++|++.|+++++++|++......|-++
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888888887555554443
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=3.8e-05 Score=65.13 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCh--HHHHH
Q 005487 477 SWTSMIAAYGSHGRALEALKLFGEMQQSNARPD---SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRN--EHYSC 551 (694)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~ 551 (694)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344455554 4788888888888888863 222 133444556788889999999999998843 222222 24456
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005487 552 LIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLI 606 (694)
Q Consensus 552 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 606 (694)
++.++...|++++|+..++........+..+...+.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7888889999999999998765434455667778888899999999999998864
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=6e-06 Score=67.69 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CccHHHHH
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPEIRED----AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDD---SSTYIVLS 620 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 620 (694)
++..++..+.+.|++++|.+.++++....|+ ...+..++.++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666665543332 2344455566666666666666666666666554 34566666
Q ss_pred HHHhhcCChHHHHHHHHHHHhCC
Q 005487 621 NMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 621 ~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
.++...|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666665544
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00037 Score=61.99 Aligned_cols=224 Identities=12% Similarity=0.084 Sum_probs=138.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHcccCChHH
Q 005487 349 LIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALA-IYSDMKEVGAKPDAVTFTSVLPACSQLAALEK 427 (694)
Q Consensus 349 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 427 (694)
+.++|...|.+.....-...-..+.......+......-++.++-+. +.+.+.......+......-...|...++++.
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~de 126 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDE 126 (299)
T ss_pred HHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHH
Confidence 44555555655443333322222333333333333333444443333 33334333333333333333456778888888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 005487 428 GKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-RDLVSWTSMIAAYGS----HGRALEALKLFGEMQ 502 (694)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 502 (694)
|.+...... +......=+.++.+..+++-|...++.|.. .+..+.+.|..++.+ .+.+.+|.-+|++|.
T Consensus 127 Al~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s 200 (299)
T KOG3081|consen 127 ALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS 200 (299)
T ss_pred HHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence 888776521 222222335567788889999999999988 555577777776654 356889999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHH-HHHHHhCCCCCCCHHH
Q 005487 503 QSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEA-YGILQSTPEIREDAGL 581 (694)
Q Consensus 503 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~p~~~~ 581 (694)
++ .+|++.+.+..+.++...|++++|..+++.++.+. ..++++...++..-...|...++ .+.+.+.....|....
T Consensus 201 ~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 201 EK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred cc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 86 58899999999999999999999999999998532 34466777777666667765444 3555555545555443
No 141
>PF12854 PPR_1: PPR repeat
Probab=98.30 E-value=8.1e-07 Score=52.69 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=28.6
Q ss_pred CCCCCchhhhHHHHHHhcCCChhHHHHHHhhCC
Q 005487 33 GLQNNIALCKSLINLYFSCQNYDYAMLVFKTID 65 (694)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 65 (694)
|++||..+|+.||+.|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778888899999999999999999988888874
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=4.7e-06 Score=75.32 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=95.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcC
Q 005487 482 IAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAG 560 (694)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 560 (694)
..-+.+.++|.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+ .+.|. ...|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 445778899999999999999963 4467888888999999999999999999888 56777 569999999999999
Q ss_pred CHHHHHHHHHhCCCCCCCHHHHHHHH-HHHHHcCCHH---HHHHHHHHHHhc
Q 005487 561 RLQEAYGILQSTPEIREDAGLLSTLF-SACRLHRDIE---MGEKIAKLLIEK 608 (694)
Q Consensus 561 ~~~~A~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~---~A~~~~~~~~~~ 608 (694)
++++|++.|+++.++.|+...|..=+ .+-...+... .+...++.+-.+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 99999999999999999877665433 3333333332 444444444333
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=3.7e-07 Score=68.96 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHH
Q 005487 559 AGRLQEAYGILQSTPEIRE---DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKI 635 (694)
Q Consensus 559 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 635 (694)
.|+++.|+.+++++.+..| +...+..++.++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3556666666666555333 234455566666777777777777766 666666666666777777777777777777
Q ss_pred HHH
Q 005487 636 RLK 638 (694)
Q Consensus 636 ~~~ 638 (694)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=1e-05 Score=79.89 Aligned_cols=103 Identities=14% Similarity=0.066 Sum_probs=62.0
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCC
Q 005487 517 LSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRD 594 (694)
Q Consensus 517 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 594 (694)
...+...|++++|+..|++++. ..|+ ...|..++.+|.+.|++++|+..++++.+..|+ ...+..++.++...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3445556666666666666662 2343 445556666666666666666666666655553 4455566666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 005487 595 IEMGEKIAKLLIEKDPDDSSTYIVLSNM 622 (694)
Q Consensus 595 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 622 (694)
+++|+..++++++++|+++.+...+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666666555554433
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=6.6e-06 Score=64.33 Aligned_cols=94 Identities=24% Similarity=0.229 Sum_probs=77.7
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC
Q 005487 549 YSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK 627 (694)
Q Consensus 549 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 627 (694)
+..++..+...|++++|...++++.+..|+ ...+..++..+...|++++|...+++++...|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456777788888888888888887765554 4567777888888899999999999999999988888999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 005487 628 KWDEVRKIRLKMKEL 642 (694)
Q Consensus 628 ~~~~A~~~~~~~~~~ 642 (694)
++++|.+.+++....
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.001 Score=71.80 Aligned_cols=153 Identities=11% Similarity=0.102 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHh
Q 005487 408 DAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGS 487 (694)
Q Consensus 408 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 487 (694)
+...+..+..+|.+.|+.+++..+|+++++.+ +.++.+.|.++..|... ++++|.+++.+. +..+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHh
Confidence 33455666667777777777777777777766 55667777777777777 777777665543 233555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHH
Q 005487 488 HGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYG 567 (694)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 567 (694)
.+++..+.++|.++... .|+. ++.-.++.+.+....+..--..++..+...|-..+++++++.
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d---------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDD---------------FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred hhcchHHHHHHHHHHhc--Cccc---------------chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 66777777777777765 2321 122222223332222222223344445555666666666666
Q ss_pred HHHhCCCCCCC-HHHHHHHHHHHH
Q 005487 568 ILQSTPEIRED-AGLLSTLFSACR 590 (694)
Q Consensus 568 ~~~~~~~~~p~-~~~~~~l~~~~~ 590 (694)
+++.+.+.+|+ ......++..|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 66666665553 233444444443
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.23 E-value=2.6e-06 Score=61.54 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC-ChHHHHHHHHHHHhC
Q 005487 578 DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK-KWDEVRKIRLKMKEL 642 (694)
Q Consensus 578 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 642 (694)
++..|..++..+...|++++|+..++++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888999999999999999999999999999999999999999999 799999999987653
No 148
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.4e-06 Score=74.67 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=92.5
Q ss_pred CCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCccHHH
Q 005487 543 QPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLH---RDIEMGEKIAKLLIEKDPDDSSTYIV 618 (694)
Q Consensus 543 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~ 618 (694)
+-|.+.|..|+.+|...|+...|...|.++.++.| ++..+..++.++..+ .+..++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34578999999999999999999999999988666 467777777765443 36889999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCccCCc
Q 005487 619 LSNMYASVKKWDEVRKIRLKMKELGLRKNPG 649 (694)
Q Consensus 619 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 649 (694)
|+..+..+|++.+|...|+.|.+.....+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999888755544
No 149
>PF12854 PPR_1: PPR repeat
Probab=98.22 E-value=2e-06 Score=51.04 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=14.9
Q ss_pred CCCCchhHHHHHHHhhHhcCChHHHHHHHhcC
Q 005487 237 GFVSDSYISSALVDMYGKCGCLEMAREVFEQT 268 (694)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 268 (694)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=4.5e-05 Score=74.80 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 005487 446 VMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGW 525 (694)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 525 (694)
....++..+...++++.|..+|+++.+.++.....+++.+...++-.+|++++.+.++.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667778889999999999888777677778888888889999999999998763 3456666666777889999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 005487 526 VDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPE 574 (694)
Q Consensus 526 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 574 (694)
++.|+.+.+++. ...|+ ..+|..|+.+|.+.|+++.|+..++.++-
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999998 55676 45899999999999999999999998884
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=2.1e-05 Score=64.36 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=68.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC----HHHHHHHH
Q 005487 512 TFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED----AGLLSTLF 586 (694)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 586 (694)
++..++..+...|++++|...++.+.....-.|. ...+..++.++.+.|++++|...++.+....|+ ...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666677777777777777643211111 235556777777777777777777776654443 34566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCccH
Q 005487 587 SACRLHRDIEMGEKIAKLLIEKDPDDSSTY 616 (694)
Q Consensus 587 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 616 (694)
.++...|+.++|...++++++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777778888888888888888888765543
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.1e-05 Score=71.48 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=116.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHH-------------H
Q 005487 483 AAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEH-------------Y 549 (694)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-------------~ 549 (694)
.++...|++++|...--...+.+ ..+......-..++.-.++.+.|...|++.+ .+.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 45667788888888877777653 2233333333345666788888999888887 55666321 1
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHh
Q 005487 550 SCLIDLLGRAGRLQEAYGILQSTPEIREDA-----GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYA 624 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 624 (694)
..-++-..+.|++..|.+.|.+++.+.|+. ..|...+.+..+.|+.++|+...+.+++++|.-..+|...+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 222445668899999999999988877653 445566666778899999999999999999998889999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 005487 625 SVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 625 ~~g~~~~A~~~~~~~~~~~ 643 (694)
..++|++|.+-+++..+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999988876544
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=98.18 E-value=2.4e-05 Score=64.83 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=85.7
Q ss_pred CCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHH
Q 005487 541 NIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIV 618 (694)
Q Consensus 541 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 618 (694)
|+.++ .+.....+.-+..+|++++|..+|+-..-.+| +...|..|+.++...|++++|+..|..+..++++||.+...
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 23344556667789999999999998665454 56788899999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHh
Q 005487 619 LSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 619 l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
.+.+|...|+.++|++.|+....
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.16 E-value=4.4e-06 Score=59.43 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=44.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 585 LFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 585 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
++..+...|++++|+..++++++.+|+++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45566777888888888888888888888888888888888888888888887776544
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.017 Score=60.69 Aligned_cols=218 Identities=16% Similarity=0.071 Sum_probs=132.9
Q ss_pred hCCCChhhHhHHHHHHHHhC-CCCCchhhhHHHHHHhcCCChhHHHHHHhhCCC--CCchhhHHHHHHHHHccCChhHHH
Q 005487 14 TGSKSLKEGKIIHQKVVTLG-LQNNIALCKSLINLYFSCQNYDYAMLVFKTIDN--PLDLSLWNGLMASYTKNYMYITAL 90 (694)
Q Consensus 14 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 90 (694)
..++.++.|......+.+.. -.+...++..|. ..+.|+.++|..+++.... +++..+...+-.+|.+.++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34667888888777777664 122234444443 4578999999988888743 333337888888899999999999
Q ss_pred HHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcC-CC---------hHHH
Q 005487 91 ELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKC-NS---------FECA 160 (694)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A 160 (694)
.+|+...+. .|+......+..++.+.+++.+-.++--++.+. .+.++..+=+.++.+... .. ..-|
T Consensus 98 ~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999876 566777788888888888777655555455443 333443333344433321 11 1223
Q ss_pred HHHhccCCCCC--cccH---HHHHHHHHhCCChhHHHHHHH-HHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 005487 161 VKMFDEMSERD--VASW---NTVISCYYQDGQAEKALELFK-KMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFI 234 (694)
Q Consensus 161 ~~~~~~~~~~~--~~~~---~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 234 (694)
.+.++.+.+.+ ..+- ..-...+...|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444322 1111 112233456778888888883 33332222333344455666777788888888888777
Q ss_pred HhC
Q 005487 235 KDG 237 (694)
Q Consensus 235 ~~~ 237 (694)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 776
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.12 E-value=2.4e-05 Score=68.69 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPEIRED----AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMY 623 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 623 (694)
.+..++..+...|++++|...++++.+..|+ ...+..++..+...|++++|...++++++..|+++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 5566677777777777777777776643332 346677777788888888888888888888888888888888888
Q ss_pred hhcCC--------------hHHHHHHHHHHHh
Q 005487 624 ASVKK--------------WDEVRKIRLKMKE 641 (694)
Q Consensus 624 ~~~g~--------------~~~A~~~~~~~~~ 641 (694)
...|+ +++|.+.+++...
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 77776 4556666655544
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.09 E-value=0.012 Score=56.87 Aligned_cols=119 Identities=19% Similarity=0.156 Sum_probs=76.2
Q ss_pred CChHHHHHHHhhCCC---CChHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHH--HHH
Q 005487 458 GAVDEAFKVFNELPE---RDLVSWTSMIA----AYGS---HGRALEALKLFGEMQQSNARPDS----ITFLALLS--ACS 521 (694)
Q Consensus 458 g~~~~A~~~~~~~~~---~~~~~~~~l~~----~~~~---~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~--~~~ 521 (694)
+.-+.|+.+++.+.. -|...-|.... .|.+ ......-+.+-+-+.+.|++|-. ..-+.+.. -+.
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 337778888877765 34433333222 2221 12333444444455566776632 34444444 356
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHH
Q 005487 522 HAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLL 582 (694)
Q Consensus 522 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 582 (694)
..|++.++.-+-.-+. .+.|++.+|..++-.+....++++|+.++...+ |+..++
T Consensus 474 sqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---~n~~~~ 528 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP---PNERMR 528 (549)
T ss_pred hcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC---CchhhH
Confidence 6789998877666665 678999999999999999999999999999876 454443
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.07 E-value=4.1e-05 Score=75.59 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhh
Q 005487 480 SMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGR 558 (694)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 558 (694)
..+..+...|+++.|+..|++++... +.+...+..+..+|...|++++|+..+++++ .+.|+ ...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 34566778899999999999999874 4457888888899999999999999999998 44565 6688899999999
Q ss_pred cCCHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005487 559 AGRLQEAYGILQSTPEIREDAGLLSTLF 586 (694)
Q Consensus 559 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 586 (694)
.|++++|+..|+++.+..|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999988888755444443
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.06 E-value=3.2e-05 Score=67.68 Aligned_cols=94 Identities=9% Similarity=-0.092 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 005487 546 NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED----AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSN 621 (694)
Q Consensus 546 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 621 (694)
...+..++..+...|++++|+..++++....|+ ..++..++..+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456677788888889999999988887654443 2467888889999999999999999999999998888888888
Q ss_pred HHh-------hcCChHHHHHHHHHH
Q 005487 622 MYA-------SVKKWDEVRKIRLKM 639 (694)
Q Consensus 622 ~~~-------~~g~~~~A~~~~~~~ 639 (694)
++. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666655543
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.05 E-value=1.3e-05 Score=57.03 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=53.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 005487 551 CLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDS 613 (694)
Q Consensus 551 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 613 (694)
.++..+...|++++|.+.|+++.+..|+ ...|..++.++...|++++|...++++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3577888999999999999998887775 56888889999999999999999999999999874
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.00019 Score=74.05 Aligned_cols=140 Identities=14% Similarity=0.051 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHcc--------CCHHHHHHHHHHhHH
Q 005487 473 RDLVSWTSMIAAYGS--H---GRALEALKLFGEMQQSNARPD-SITFLALLSACSHA--------GWVDEGGYYFNLMIS 538 (694)
Q Consensus 473 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 538 (694)
.+..+|...+++... . ++...|..+|++.++. .|+ ...+..+..++... +++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455566666555332 2 2366788888888885 565 34455444433221 122333444443331
Q ss_pred hcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 005487 539 EYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 539 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
......++..|..++-.....|++++|...++++....|+...|..++..+...|+.++|.+.+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112334566777777777778888888888888888888777888888888888888888888888888888764
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.00089 Score=56.04 Aligned_cols=151 Identities=12% Similarity=-0.002 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHH
Q 005487 485 YGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQE 564 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 564 (694)
..+.=|++...+-..+-.. ..|....-..|..+..+.|+..+|...|++.. ..-+.-|......++++....++..+
T Consensus 66 ~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 66 LQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHH
Confidence 3333344444433333333 25666666677777888888888888888876 32344556677777888888888888
Q ss_pred HHHHHHhCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHH
Q 005487 565 AYGILQSTPEIRED---AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKM 639 (694)
Q Consensus 565 A~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 639 (694)
|...+++..+..|. +.....++..+...|.++.|+..++.++..-| .+......+..+.++|+.++|..-+..+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88888877664442 34455667778888888888888888888777 4566667777788888877776555444
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=0.00018 Score=63.09 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 005487 476 VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD--SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCL 552 (694)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 552 (694)
..+..+...+...|++++|...+++..+.+..+. ...+..+...+...|++++|...++++.. ..|+ ...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 3566666667777777777777777765432221 24566666667777777777777776662 2343 4455556
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCC
Q 005487 553 IDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKK 628 (694)
Q Consensus 553 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 628 (694)
+.++...|+...+..-++.+. +.+++|.+.++++++.+|++ |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666555443333221 23678899999999999887 5555555555443
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=9.5e-05 Score=61.63 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=97.6
Q ss_pred hHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 005487 536 MISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE--IREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD-- 611 (694)
Q Consensus 536 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-- 611 (694)
+.++..+.|+...-..|+.++.+.|++.+|...|++... +..|+..+..+..+....++...|...++++.+-+|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 333446678888888999999999999999999999775 5668888899999999999999999999999999985
Q ss_pred CCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccC
Q 005487 612 DSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKN 647 (694)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 647 (694)
.|.....++..|..+|++++|+..|+...+......
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 777889999999999999999999999988775443
No 165
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.91 E-value=0.022 Score=53.97 Aligned_cols=274 Identities=16% Similarity=0.175 Sum_probs=177.3
Q ss_pred cCCHHHHHHHHhcCC---CCChhHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHcccCChHHH
Q 005487 356 CGRVSSAENVFEKMS---KTDVVYWNVMIS--GYVTVGDYFKALAIYSDMKEVGAKPDAV--TFTSVLPACSQLAALEKG 428 (694)
Q Consensus 356 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a 428 (694)
.|+-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 455555555544332 233333333333 334568888899888888762 3222 123333334567888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChH--HHHHHHHHH---HhcCCHHHHHHHH
Q 005487 429 KEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-----RDLV--SWTSMIAAY---GSHGRALEALKLF 498 (694)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~l~~~~---~~~~~~~~A~~~~ 498 (694)
..+-+..-..- +.-.....+.+...+..|+++.|+++++.-.. ++.. .-..|+.+- .-..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877775543 33456677888889999999999999986543 4433 111222221 1224567777777
Q ss_pred HHHHHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHh---CCC
Q 005487 499 GEMQQSNARPDSI-TFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQS---TPE 574 (694)
Q Consensus 499 ~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~ 574 (694)
.+..+ +.|+.. .-.....++.+.|+..++-.+++.+. ...|.+..+. ...+.+.|+. ++.-+++ ..+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHh
Confidence 77766 477754 34444568999999999999999998 3466665543 2334455543 3333333 222
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhc-CChHHHHHHHHHHHhCC
Q 005487 575 IRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASV-KKWDEVRKIRLKMKELG 643 (694)
Q Consensus 575 ~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 643 (694)
.+|+ .........+....|++..|..-.+.+....|. ..+|..++++-... |+-.++...+-+.....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4554 456667777788899999999999999999985 57888899987665 99999988888766544
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=2.3e-05 Score=47.40 Aligned_cols=35 Identities=40% Similarity=0.711 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCh
Q 005487 173 ASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNS 207 (694)
Q Consensus 173 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 207 (694)
.+||.+|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.90 E-value=4.3e-05 Score=55.86 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 586 FSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 586 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
...+...+++++|..+++++++.+|+++..+..+|.++...|++++|.+.+++..+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677889999999999999999999999999999999999999999999998876554
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.89 E-value=0.0016 Score=60.33 Aligned_cols=57 Identities=9% Similarity=0.108 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---cHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 584 TLFSACRLHRDIEMGEKIAKLLIEKDPDDSS---TYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 584 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.++..|.+.|.+..|..-++.+++.-|+.+. +...++.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4456688899999999999999998887544 56678889999999999999887664
No 169
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.88 E-value=5.9e-05 Score=70.90 Aligned_cols=130 Identities=12% Similarity=0.024 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCC----C---CCCH
Q 005487 511 ITFLALLSACSHAGWVDEGGYYFNLM---ISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPE----I---REDA 579 (694)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---~p~~ 579 (694)
..|..|...|.-.|+++.|+...+.- .+++|-... ...+..+++++.-.|+++.|.+.|+.... + ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34555666666678888888776542 223343322 34677888899999999999988886332 1 2233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEKD------PDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
..-.+++.+|...+++++|+.+.++-+.+. .....++..|+.++...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445677788888888999999888766432 2356688889999999999999988776543
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=4.8e-05 Score=57.32 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHH
Q 005487 488 HGRALEALKLFGEMQQSNAR-PDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEA 565 (694)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 565 (694)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666654211 1233344455566666666666666655 2 11222 23333445666666666666
Q ss_pred HHHHHh
Q 005487 566 YGILQS 571 (694)
Q Consensus 566 ~~~~~~ 571 (694)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=2.8e-05 Score=56.06 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 005487 545 RNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHR-DIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 545 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 610 (694)
++..|..++..+...|++++|+..|+++.+..|+ ...|..++.++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567788888888999999999999888876675 567888888888888 79999999999999887
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=1.6e-05 Score=57.11 Aligned_cols=54 Identities=13% Similarity=0.326 Sum_probs=45.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 590 RLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 590 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999999999999999999999888766543
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00016 Score=56.24 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHc
Q 005487 515 ALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLH 592 (694)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 592 (694)
.+...+...|++++|...++.+.+ ..|+ ...+..++..+...|++++|.+.+++.....|. ...+..++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344445555566666666655552 1222 244555566666666666666666655443333 34555666666666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005487 593 RDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 593 ~~~~~A~~~~~~~~~~~p 610 (694)
|+++.|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 677777777766666655
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00033 Score=61.25 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=55.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHH
Q 005487 512 TFLALLSACSHAGWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSAC 589 (694)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 589 (694)
.+..+...+...|++++|...|+.+.....-.+ ...++..++.++...|++++|+..++++.+..|+ ...+..++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 334444444455555555555555542111001 1224555555555555555555555555544333 22333333333
Q ss_pred H-------HcCCHH-------HHHHHHHHHHhcCCCCCccHHHHHHHHhhcCCh
Q 005487 590 R-------LHRDIE-------MGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKW 629 (694)
Q Consensus 590 ~-------~~~~~~-------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 629 (694)
. ..|+++ +|...+++++..+|++ +......+...|++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 3 455544 5666677777777754 23344444444443
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.82 E-value=9.9e-06 Score=47.98 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHH
Q 005487 601 IAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRK 634 (694)
Q Consensus 601 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 634 (694)
+++++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.81 E-value=0.00061 Score=56.46 Aligned_cols=90 Identities=11% Similarity=-0.001 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 005487 449 ALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGW 525 (694)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 525 (694)
.+...+...|++++|.++|+.+.. .+..-|..|..++...|++++|+..|......+ +.|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 444445566666666666665544 234456666666666666666666666666643 2345666666666666666
Q ss_pred HHHHHHHHHHhHHh
Q 005487 526 VDEGGYYFNLMISE 539 (694)
Q Consensus 526 ~~~A~~~~~~~~~~ 539 (694)
.+.|.+.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666543
No 177
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=4.1e-05 Score=45.83 Aligned_cols=33 Identities=27% Similarity=0.664 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 005487 173 ASWNTVISCYYQDGQAEKALELFKKMRGSGFQP 205 (694)
Q Consensus 173 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 205 (694)
.+|+.++.+|.+.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.00074 Score=69.77 Aligned_cols=135 Identities=8% Similarity=-0.001 Sum_probs=99.6
Q ss_pred CCCCHhhHHHHHHHHH--ccC---CHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHhhhc--------CCHHHHHHHHHh
Q 005487 506 ARPDSITFLALLSACS--HAG---WVDEGGYYFNLMISEYNIQPRN-EHYSCLIDLLGRA--------GRLQEAYGILQS 571 (694)
Q Consensus 506 ~~p~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~ 571 (694)
.+.|...|...+++.. ..+ ....|..+|+++. ...|+- ..+..++.++... ++.+.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4567788888888643 333 3778999999998 557873 3555444433221 234566666666
Q ss_pred CCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 572 TPE---IREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 572 ~~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
... ...++..+..++......|++++|...++++++++| +...|..+|.++...|+.++|.+.+++.....+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 443 233456777777777778999999999999999999 578999999999999999999999999876554
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.76 E-value=0.00017 Score=67.18 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=41.4
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCH
Q 005487 521 SHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED----AGLLSTLFSACRLHRDI 595 (694)
Q Consensus 521 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~ 595 (694)
.+.|++++|+..|+.+++.+.-.+- +..+..++.+|...|++++|...|+++.+..|+ +..+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555555533211110 124444555555555555555555544432222 23333444444444555
Q ss_pred HHHHHHHHHHHhcCCCC
Q 005487 596 EMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~ 612 (694)
++|...++++++..|++
T Consensus 234 ~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 55555555555554443
No 180
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.76 E-value=5.6e-05 Score=45.62 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005487 376 YWNVMISGYVTVGDYFKALAIYSDMKEVGAKPD 408 (694)
Q Consensus 376 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 408 (694)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999999888887
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.00043 Score=55.30 Aligned_cols=90 Identities=17% Similarity=0.076 Sum_probs=58.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCccHHHHHHHH
Q 005487 551 CLIDLLGRAGRLQEAYGILQSTPEIRED----AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD---DSSTYIVLSNMY 623 (694)
Q Consensus 551 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 623 (694)
.++.++...|+.++|+.+|++..+..++ ...+..++.++...|++++|..++++.+...|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4555666667777777777765542222 234556666777777777777777777777666 555666667777
Q ss_pred hhcCChHHHHHHHHHHH
Q 005487 624 ASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 624 ~~~g~~~~A~~~~~~~~ 640 (694)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77777777777665443
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.73 E-value=0.001 Score=63.31 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 005487 476 VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSA-CSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLID 554 (694)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 554 (694)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467888888888888999999999998643 3345556555554 334577777999999999754 455667778889
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 005487 555 LLGRAGRLQEAYGILQSTPEIREDA----GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 555 ~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
.+.+.|+.+.|..+|+++...-+.. .+|...+..-...|+.+....+.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999987644443 48999999999999999999999999998887443
No 183
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00019 Score=68.13 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNPGCSWIEIGDRI 659 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
..+..++..+.+.+++..|+...+++++.+|+|..+.+.-|.+|...|+++.|+..|+++++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---------------- 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE---------------- 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC----------------
Confidence 4567788888899999999999999999999999999999999999999999999999988644
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHhhhcc
Q 005487 660 QPFFAEDKFYPQADMVYECLAILAGHMEKDE 690 (694)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (694)
|...++..+|..+.+|+++|+
T Consensus 322 ----------P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 322 ----------PSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred ----------CCcHHHHHHHHHHHHHHHHHH
Confidence 344566666777777776643
No 184
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.69 E-value=6.8e-05 Score=44.86 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 005487 274 VAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKP 306 (694)
Q Consensus 274 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 306 (694)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.64 E-value=0.068 Score=51.56 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 005487 446 VMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGW 525 (694)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 525 (694)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+... +-.+..|...+.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444555666778888888888777778888888888888888888776654321 2245777788888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHh
Q 005487 526 VDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQS 571 (694)
Q Consensus 526 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 571 (694)
..+|..+..++. + ..-+..|.+.|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~~------~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP------D-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC------h-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 888887777632 1 3346677788888777665444
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=4.3e-05 Score=54.89 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH
Q 005487 522 HAGWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG 580 (694)
Q Consensus 522 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 580 (694)
+.|++++|+.+|+.+... .| +......++.+|.+.|++++|.++++++....|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 456666666666666532 23 344555566666666666666666666665555533
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.61 E-value=0.00097 Score=62.17 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcC
Q 005487 486 GSHGRALEALKLFGEMQQSNARPDS----ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAG 560 (694)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 560 (694)
.+.|++++|...|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+.+...|. ...+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3345555555555555543 2322 34444444555555555555555555433222222 223444444555555
Q ss_pred CHHHHHHHHHhCCCCCCC
Q 005487 561 RLQEAYGILQSTPEIRED 578 (694)
Q Consensus 561 ~~~~A~~~~~~~~~~~p~ 578 (694)
+.++|...|+++.+..|+
T Consensus 232 ~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 555555555554443343
No 188
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.58 E-value=0.086 Score=51.29 Aligned_cols=189 Identities=14% Similarity=0.084 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC--CChHH-------HHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHh
Q 005487 445 IVMGALLDMYAKCGAVDEAFKVFNELPE--RDLVS-------WTSMIAAYG----SHGRALEALKLFGEMQQSNARPDSI 511 (694)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~ 511 (694)
.++..++....+.++...|.+.+.-+.. |+... -..+-...+ ..-+...=+.+|+.....++.. ..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQ 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQ 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HH
Confidence 3455555666666777777666654443 22110 011111111 1112233455666666653221 22
Q ss_pred hHHHHHH---HHHccCC-HHHHHHHHHHhHHhcCCCCC-hHHHHH----HHHHhhhcC---CHHHH---HHHHHhCCCCC
Q 005487 512 TFLALLS---ACSHAGW-VDEGGYYFNLMISEYNIQPR-NEHYSC----LIDLLGRAG---RLQEA---YGILQSTPEIR 576 (694)
Q Consensus 512 ~~~~l~~---~~~~~g~-~~~A~~~~~~~~~~~~~~p~-~~~~~~----l~~~~~~~g---~~~~A---~~~~~~~~~~~ 576 (694)
....|+. -+.+.|. -++|+++++.+.+ +.|. ...-+. +=..|..+= .+.+- ...+++.- +.
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g-l~ 453 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG-LT 453 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 2223332 4566666 7788899888873 3332 222111 112222111 11111 11111211 33
Q ss_pred C----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHH
Q 005487 577 E----DAGLLSTLFSA--CRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKM 639 (694)
Q Consensus 577 p----~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 639 (694)
| +...-+.+..+ +..+|++.++.-.-.=+.+..| ++.+|..+|-++....++++|..++..+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3 34456666665 5678999999998888889999 9999999999999999999999999864
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.011 Score=55.90 Aligned_cols=213 Identities=13% Similarity=0.081 Sum_probs=127.7
Q ss_pred cccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHhhCCC-CChH--HHHHHHHHHHhcCCHHHH
Q 005487 420 SQLAALEKGKEIHNHIIESKLETNEIVMGALLDM--YAKCGAVDEAFKVFNELPE-RDLV--SWTSMIAAYGSHGRALEA 494 (694)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~A 494 (694)
.-.||-..|.+.-.+..+. +..|..-.-.++.+ -.-.|+++.|.+-|+.|.. |... ....|.-.-.+.|+.+.|
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 3467777777766654321 12222222223322 2346888888888888887 4332 334444445677888888
Q ss_pred HHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHH--HHH--HHHhhh-cCCHHHHHHH
Q 005487 495 LKLFGEMQQSNARPD-SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHY--SCL--IDLLGR-AGRLQEAYGI 568 (694)
Q Consensus 495 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~--~~l--~~~~~~-~g~~~~A~~~ 568 (694)
..+-++.... .|. .......+...+..|+|+.|+++.+.-....-+.++..-- ..| ..+... .-+...|...
T Consensus 174 r~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 8888877764 344 5677777888888888888888888777655566663211 111 111111 1246667776
Q ss_pred HHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 569 LQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 569 ~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
-.+..++.|+. ........++.+.|++.++-.+++.+.+..|. |. +..+|....--|.++.-+++..
T Consensus 252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHH
Confidence 66666677764 33444556777888888888888888887773 22 3334444433344555454443
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.022 Score=54.50 Aligned_cols=153 Identities=11% Similarity=-0.009 Sum_probs=86.1
Q ss_pred cccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChH---------------HHHHHHHH
Q 005487 420 SQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLV---------------SWTSMIAA 484 (694)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~~~ 484 (694)
...++.+.|.++--.+.+.+ +.+......-..++--.++.+.|...|++.+..++. .|..-..-
T Consensus 180 ~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 34555555555544444432 111111111122233445666666666665552221 12222333
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcC
Q 005487 485 YGSHGRALEALKLFGEMQQSN---ARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAG 560 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 560 (694)
..+.|.+..|.+.|.+.+... ..|+...|.....+..+.|+.++|+.-.+... .+.|. ...|..-++++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 556777888888887777642 23344556666667777788888887777776 44444 335555566777777
Q ss_pred CHHHHHHHHHhCCCCC
Q 005487 561 RLQEAYGILQSTPEIR 576 (694)
Q Consensus 561 ~~~~A~~~~~~~~~~~ 576 (694)
++++|.+-++++.+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888887766533
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.14 Score=52.54 Aligned_cols=150 Identities=9% Similarity=0.109 Sum_probs=73.1
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCC-----hhHHHHHHHHHHcCCCchHHHHH
Q 005487 221 MDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKS-----VVAWNALIAGYSSRGDSKSCVKL 295 (694)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~ 295 (694)
|++++|++++-++-++. .-+..+.+.|++-....+++.-...+ ..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665554432 23445556666666666665432221 24566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh
Q 005487 296 FWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVV 375 (694)
Q Consensus 296 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 375 (694)
|..-... ...+.++.+..+++..+.+-. .++.+....-.+..++.+.|.-++|.+.|-+...|.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 6543211 112223333323322222211 123344455556666666666666666554443332
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 005487 376 YWNVMISGYVTVGDYFKALAIYS 398 (694)
Q Consensus 376 ~~~~l~~~~~~~~~~~~A~~~~~ 398 (694)
..+..+...+++.+|.++-+
T Consensus 883 ---aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 12334444555555555443
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.54 E-value=0.0018 Score=58.50 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---cHHHHHHHHhhcCChHHHH
Q 005487 584 TLFSACRLHRDIEMGEKIAKLLIEKDPDDSS---TYIVLSNMYASVKKWDEVR 633 (694)
Q Consensus 584 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 633 (694)
.++..|.+.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3456688899999999999999999998554 5666788899999888553
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.54 E-value=0.00022 Score=52.10 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=53.6
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHH
Q 005487 553 IDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVL 619 (694)
Q Consensus 553 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 619 (694)
..+|.+.+++++|+++++.+.+..|+ ...|...+..+...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 45678888999999999988887665 55677788888889999999999999999999776654443
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.0065 Score=58.20 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005487 478 WTSMIAAYGSHGRALEALKLFGEMQQ 503 (694)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (694)
+..++..+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455555555555555555444
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0028 Score=58.21 Aligned_cols=115 Identities=17% Similarity=0.066 Sum_probs=86.5
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcC---CHHHHHHHHHhCC
Q 005487 497 LFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAG---RLQEAYGILQSTP 573 (694)
Q Consensus 497 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 573 (694)
-++.-...+ +-|...|..|...|...|+.+.|...|.+..+-. .+++..+..++.++..+. ...++..+++++.
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334334432 4567899999999999999999999999988322 234556667777665433 4678899999988
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 005487 574 EIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 574 ~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
+.+|+ ......++..+...|++.+|...++.+++..|.+..
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 87775 456777778899999999999999999999886543
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.0031 Score=60.36 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HhhHHHHHHHHHcc-CCHHHHHHHHHHhHHhcCCCCC----h
Q 005487 478 WTSMIAAYGSHGRALEALKLFGEMQQ----SNARPD--SITFLALLSACSHA-GWVDEGGYYFNLMISEYNIQPR----N 546 (694)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~ 546 (694)
|......|.+. ++++|+..+++... .| .|+ ...+..+...|... |++++|++.|+++..-+..... .
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 33444444443 77777777766553 23 333 24566667778888 8999999999988753322222 3
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhCCCC--C-C----CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc---
Q 005487 547 EHYSCLIDLLGRAGRLQEAYGILQSTPEI--R-E----DA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST--- 615 (694)
Q Consensus 547 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-p----~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--- 615 (694)
..+..++..+.+.|++++|+++|+++... . + +. ..+...+..+...||...|...+++....+|.-..+
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 46677889999999999999999985431 1 1 11 123334445667899999999999999998864443
Q ss_pred --HHHHHHHHhhc--CChHHHHHHHH
Q 005487 616 --YIVLSNMYASV--KKWDEVRKIRL 637 (694)
Q Consensus 616 --~~~l~~~~~~~--g~~~~A~~~~~ 637 (694)
...|+.++-.. ..+.+|+.-|+
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 23344444332 34444544444
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.45 E-value=0.00018 Score=45.88 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSN 621 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 621 (694)
..|..++..+...|++++|+..++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999999999988875
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.43 E-value=0.00059 Score=66.65 Aligned_cols=65 Identities=9% Similarity=-0.089 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc---HHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 578 DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST---YIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 578 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
+...+..++.++...|++++|+..++++++++|+++.+ |++++.+|..+|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667777777777777777777777777777777643 777777777777777777777776664
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.43 E-value=0.0016 Score=64.44 Aligned_cols=118 Identities=8% Similarity=0.092 Sum_probs=93.5
Q ss_pred CCchhHHHHHHHhhhcCCChHHHHHHhccCCC-C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHH
Q 005487 138 LLDVVIASSTAGMYAKCNSFECAVKMFDEMSE-R-----DVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLT 211 (694)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 211 (694)
+.+......+++.+....+++.+..++-+.+. + -+.+..++++.|...|..+.++.++..=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34444555566666667777778777776654 1 23456799999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 005487 212 TVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKC 255 (694)
Q Consensus 212 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 255 (694)
.+|..+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999888777777776666655544
No 200
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00023 Score=41.41 Aligned_cols=29 Identities=48% Similarity=0.800 Sum_probs=21.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005487 174 SWNTVISCYYQDGQAEKALELFKKMRGSG 202 (694)
Q Consensus 174 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 202 (694)
+||.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 201
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0013 Score=62.73 Aligned_cols=132 Identities=11% Similarity=0.094 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhh-cCCHHHHHHHHHhCCC-CCCCHHHHHHHHHH
Q 005487 511 ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGR-AGRLQEAYGILQSTPE-IREDAGLLSTLFSA 588 (694)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~ 588 (694)
.+|..++....+.+..+.|..+|.++.+. -..+..+|...+..-.+ .++.+.|..+|+.+.+ +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999832 12345567666666444 5677779999999776 55677899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 589 CRLHRDIEMGEKIAKLLIEKDPDDS---STYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 589 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
+...++.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998877654 5788899989999999999999988876543
No 202
>PRK11906 transcriptional regulator; Provisional
Probab=97.38 E-value=0.0026 Score=62.36 Aligned_cols=146 Identities=10% Similarity=0.073 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHcc---------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHhh
Q 005487 490 RALEALKLFGEMQQS-NARPD-SITFLALLSACSHA---------GWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDLLG 557 (694)
Q Consensus 490 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 557 (694)
..+.|+.+|.+.... .+.|+ ...|..+..++... ....+|.++-++.. .+.| |+.....++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 456788888888821 24565 46666666654432 23445556666665 3444 3556677777777
Q ss_pred hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH-HhhcCChHHHHHH
Q 005487 558 RAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNM-YASVKKWDEVRKI 635 (694)
Q Consensus 558 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~ 635 (694)
-.|+++.|..+|+++....|+ ...|...+..+...|+.++|.+.++++++++|.-..+-..-.++ .+-....++|+++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKL 429 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHH
Confidence 788888888888888877776 45677777777788888888888888888888755544333333 3333446677776
Q ss_pred HHH
Q 005487 636 RLK 638 (694)
Q Consensus 636 ~~~ 638 (694)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 653
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.37 E-value=0.054 Score=54.82 Aligned_cols=270 Identities=14% Similarity=0.048 Sum_probs=134.5
Q ss_pred CCchhhhHHHHHHhcCCChhHHHHHHhhCCCCC-chhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHH
Q 005487 36 NNIALCKSLINLYFSCQNYDYAMLVFKTIDNPL-DLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLK 114 (694)
Q Consensus 36 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 114 (694)
+-...+..-+--|...|.+++|... .-+. +..-|..|...-...=+++-|.+.|.+.+..+ |..
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~i----aclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~--------~L~--- 618 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQI----ACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLR--------YLE--- 618 (1081)
T ss_pred cccccccccchhhhhccchhhhhcc----cccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH--------HHH---
Confidence 3334444455556666666666542 2221 11135555554445555555555555554320 111
Q ss_pred HhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 005487 115 ACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALEL 194 (694)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 194 (694)
...-++.+.+.|..|+... +...++-.|.+.+|-++|.+ .|...+|+++
T Consensus 619 ----------li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEm 667 (1081)
T KOG1538|consen 619 ----------LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEM 667 (1081)
T ss_pred ----------HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHH
Confidence 1223455666676666543 34456777888888887654 5666667777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChh
Q 005487 195 FKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVV 274 (694)
Q Consensus 195 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 274 (694)
|..|+-. -...-+...|+.++-..+.++-.+. ..+..--.....++...|+.++|..+.-
T Consensus 668 yTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~-------- 727 (1081)
T KOG1538|consen 668 YTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICG-------- 727 (1081)
T ss_pred HHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhh--------
Confidence 7766531 1223333444444443333322111 1111111234455666777777655432
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 005487 275 AWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYF 354 (694)
Q Consensus 275 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (694)
..|=.+-+.++-+++- ..+..+...+..-+-+...+..|.++|..|-.. ..++....
T Consensus 728 ----------d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHv 784 (1081)
T KOG1538|consen 728 ----------DHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHV 784 (1081)
T ss_pred ----------cccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhee
Confidence 2222222333322221 123344444444455566666777777665332 34667777
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005487 355 KCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKAL 394 (694)
Q Consensus 355 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 394 (694)
..+++++|.++-++.++--...|....+-++...++++|.
T Consensus 785 e~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred ecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH
Confidence 7888888888888777533333333333333444444443
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.0074 Score=48.31 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 005487 479 TSMIAAYGSHGRALEALKLFGEMQQSNARPD--SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDL 555 (694)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~ 555 (694)
..+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++.....+.-.+ +......++-+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3456677788888888888888888876544 34666777788888888888888888875432111 12233334567
Q ss_pred hhhcCCHHHHHHHHHhCC
Q 005487 556 LGRAGRLQEAYGILQSTP 573 (694)
Q Consensus 556 ~~~~g~~~~A~~~~~~~~ 573 (694)
+...|+.++|++.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 778888888887776543
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.019 Score=57.88 Aligned_cols=267 Identities=15% Similarity=0.187 Sum_probs=142.0
Q ss_pred cccHHHHHHHHHhCCChhHHHHHH---------HHHHhCCCCCChhhHHHHHHHHhccCChhHH--HHHHHHHHHhCCCC
Q 005487 172 VASWNTVISCYYQDGQAEKALELF---------KKMRGSGFQPNSVTLTTVISSCARLMDLDRG--KEIHKEFIKDGFVS 240 (694)
Q Consensus 172 ~~~~~~li~~~~~~~~~~~a~~~~---------~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~~~~ 240 (694)
...+.+-+..|...|.+++|.++- +.+... ..+...++..-.+|.+.++..-- ..-++++.++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 344555566777788887776541 111111 12333445555566665554432 33356677778777
Q ss_pred chhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005487 241 DSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSR 320 (694)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 320 (694)
+... +...++-.|++.+|-++|.+ .|.-..|+++|.+|+-- ...+-+..
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~ 682 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLG 682 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhh
Confidence 7653 45667788999999887764 56666666666665421 11222334
Q ss_pred cCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005487 321 SGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDM 400 (694)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 400 (694)
.|..++-..+...-.+.. .+..--.+...++...|+.++|..+. ..+|-.+-++++-+++
T Consensus 683 ~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkl 742 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKL 742 (1081)
T ss_pred cCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhc
Confidence 444443333332221111 01111122334445555555555442 2223333333333322
Q ss_pred HHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChH--
Q 005487 401 KEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDLV-- 476 (694)
Q Consensus 401 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-- 476 (694)
-. .+..+...+..-+-+...+..|-++|..+-.. ..++++....++|.+|..+-+..++ +|+.
T Consensus 743 d~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~p 809 (1081)
T KOG1538|consen 743 DK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMP 809 (1081)
T ss_pred ch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccch
Confidence 21 23334444444445566666777777766432 2567777778888888888777776 3332
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005487 477 ---------SWTSMIAAYGSHGRALEALKLFGEMQQS 504 (694)
Q Consensus 477 ---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (694)
-+...=.+|.+.|+..+|..+++++...
T Consensus 810 yaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222335677778888888888877654
No 206
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0026 Score=48.77 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCchhHHH
Q 005487 176 NTVISCYYQDGQAEKALELFKKMRGSGF-QPNSVTLTTVISSCARLM--------DLDRGKEIHKEFIKDGFVSDSYISS 246 (694)
Q Consensus 176 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (694)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+.....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566677999999999999999999 899999999999887653 2445678899999999999999999
Q ss_pred HHHHhhHh
Q 005487 247 ALVDMYGK 254 (694)
Q Consensus 247 ~l~~~~~~ 254 (694)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.27 E-value=0.0064 Score=49.54 Aligned_cols=97 Identities=12% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc---HHHHH
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPEIRE----DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST---YIVLS 620 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~ 620 (694)
.+..-+....+.|++++|.+.|+.+...-| ....-..++.++...++++.|...+++.++++|.++.+ +...|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 344455666677788888877777665333 23455677778888888888888888888888876663 44455
Q ss_pred HHHhhcCC---------------hHHHHHHHHHHHhCCC
Q 005487 621 NMYASVKK---------------WDEVRKIRLKMKELGL 644 (694)
Q Consensus 621 ~~~~~~g~---------------~~~A~~~~~~~~~~~~ 644 (694)
-++..+.. ..+|...|+.+....+
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 55666554 6677777777776554
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.14 Score=47.45 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=37.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-H---HHHHHHHHcccCChHHHHHHHHHHHHhC
Q 005487 379 VMISGYVTVGDYFKALAIYSDMKEVGAKPDAV-T---FTSVLPACSQLAALEKGKEIHNHIIESK 439 (694)
Q Consensus 379 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 439 (694)
.....+...|++++|...|+++... .|+.. . ...+..++.+.++++.|...+++.++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3445556678888888888888775 23322 1 1344556677777777777777776654
No 209
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.22 E-value=0.00043 Score=40.20 Aligned_cols=30 Identities=37% Similarity=0.716 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 005487 275 AWNALIAGYSSRGDSKSCVKLFWRMNEEGI 304 (694)
Q Consensus 275 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 304 (694)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0058 Score=54.42 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcC----CCCChHHHHHHHH
Q 005487 479 TSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYN----IQPRNEHYSCLID 554 (694)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~~~~~l~~ 554 (694)
+.++..+.-.|.+.-.+..+.+.++...+-++.....+++.-.+.|+.+.|..+|+...+..+ +.-..........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344445555566666666666666654333455566666666666666666666665543222 1111222223333
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 555 LLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 555 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
.+.-++++.+|...+.+++..+| ++...+.-+-...-.|+...|+..++.+++..|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44445555555555555554333 2333333333333345555555555555555554
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.19 E-value=0.03 Score=54.39 Aligned_cols=160 Identities=21% Similarity=0.129 Sum_probs=83.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-C------ChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 005487 450 LLDMYAKCGAVDEAFKVFNELPE-R------DLVSWTSMIAAYGS---HGRALEALKLFGEMQQSNARPDSITFLALLSA 519 (694)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 519 (694)
++-.|-...+++..+++.+.+.. | .+..-...+-++.+ .|+.++|+.++..+....-.+++.++..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33344455555555555555444 1 11122223334444 56666666666664443335555565555554
Q ss_pred HHc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHH----HHHHH---HhCC----CCCCCH
Q 005487 520 CSH---------AGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQE----AYGIL---QSTP----EIREDA 579 (694)
Q Consensus 520 ~~~---------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~~----~~~p~~ 579 (694)
|-. ....++|+..|.+.- .+.|+..+--.++.++.-.|...+ ..++- .... ...+..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 321 123667777777655 455654433333444444443221 11211 1100 023333
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005487 580 G--LLSTLFSACRLHRDIEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 580 ~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 612 (694)
. .+.+++.++.-.||+++|.+.+++++++.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3 34577888888999999999999999987653
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=97.18 E-value=0.032 Score=55.05 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=80.8
Q ss_pred ChHHHHHHHhhCC---CCC---hHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 005487 459 AVDEAFKVFNELP---ERD---LVSWTSMIAAYGSH---------GRALEALKLFGEMQQSNARPDSITFLALLSACSHA 523 (694)
Q Consensus 459 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 523 (694)
..+.|..+|.+.. ..| ...|..+..++... .+..+|.+..++..+.+ +.|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3456677777666 322 23444444333221 23445666666666654 44566666666666666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 005487 524 GWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA---GLLSTLFSACRLHRDIEMGE 599 (694)
Q Consensus 524 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~ 599 (694)
++++.|...|+++. .+.|+ ...|...+....-.|+.++|.+.++++.+..|.- .+....+..|. ..-.+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 67777777777776 55666 3456666666667777777777777766666643 22222232333 33455555
Q ss_pred HHHHH
Q 005487 600 KIAKL 604 (694)
Q Consensus 600 ~~~~~ 604 (694)
.++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 55544
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.17 E-value=0.35 Score=49.20 Aligned_cols=182 Identities=19% Similarity=0.159 Sum_probs=123.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 005487 443 NEIVMGALLDMYAKCGAVDEAFKVFNELPERD---LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSA 519 (694)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 519 (694)
....|...+.--.+.|+.+...-+|+...-|- ...|-..++-....|+.+.|..++....+--++..+.+...-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34566667777778888888888888877632 235555555555568888888888777665433333333333334
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHhhhcCCHHHHH---HHHHhCCCCCCCHHHHHHH----HHH-HH
Q 005487 520 CSHAGWVDEGGYYFNLMISEYNIQPRNE-HYSCLIDLLGRAGRLQEAY---GILQSTPEIREDAGLLSTL----FSA-CR 590 (694)
Q Consensus 520 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~l----~~~-~~ 590 (694)
+...|+++.|..+++.+..+. |+.. .-..-+....+.|..+.+. +++........+..+...+ .+. +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 556689999999999998543 6533 3334456677888888888 6666555444443333322 222 34
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC
Q 005487 591 LHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK 627 (694)
Q Consensus 591 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 627 (694)
-.++.+.|..++.++.+..|++...|..+.+....++
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999988877765
No 214
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.15 E-value=0.01 Score=58.80 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CChHHH
Q 005487 405 AKPDAVTFTSVLPACSQLAALEKGKEIHNHIIES--KLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE----RDLVSW 478 (694)
Q Consensus 405 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 478 (694)
.+.+...+..++..+....+++.+..++-+.... ....-..+..++++.|...|..+.++.+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456666677777777777777777776666543 2222334445777777777777777777766544 777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 005487 479 TSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHA 523 (694)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 523 (694)
+.|+..+.+.|++..|.++...|...+...++.|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777666556666665555555443
No 215
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.12 E-value=0.0058 Score=46.90 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=64.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccC--------ChhhhHHHHHHHHHhcCCCchhHHHH
Q 005487 278 ALIAGYSSRGDSKSCVKLFWRMNEEGI-KPTLTTISSVLMSCSRSG--------QLKHGKVMHGYIIRNKIQGDVFINSS 348 (694)
Q Consensus 278 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 348 (694)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556667999999999999999999 999999999999877653 24456778889999999999999999
Q ss_pred HHHHHHh
Q 005487 349 LIDLYFK 355 (694)
Q Consensus 349 l~~~~~~ 355 (694)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887765
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.11 E-value=0.24 Score=46.17 Aligned_cols=196 Identities=20% Similarity=0.192 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 005487 444 EIVMGALLDMYAKCGAVDEAFKVFNELPE-----RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLS 518 (694)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 518 (694)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34445555566666666666666655431 333455556666666667777777777776643222 122222222
Q ss_pred -HHHccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHH
Q 005487 519 -ACSHAGWVDEGGYYFNLMISEYNIQP----RNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED--AGLLSTLFSACRL 591 (694)
Q Consensus 519 -~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~ 591 (694)
.+...|+++.|...+..... ..| ....+......+...++.+.|...+.+.....++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56677777777777777752 222 2233344444466677777777777776664444 4556666667777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 592 HRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 592 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
.++++.|...+..++...|.....+..++..+...|.++++...+.+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777888888888877777655566666666666667777777777665444
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.47 Score=49.47 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 005487 443 NEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSH 522 (694)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 522 (694)
...+.+--+.-+...|+-.+|.++-.+..-||-..|-.-+.+++..+++++-.++-+.. -.+..|.....+|.+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLK 756 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHh
Confidence 33444455555667788888888888887788887777778888888876644433322 225667777788888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHH
Q 005487 523 AGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQ 570 (694)
Q Consensus 523 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 570 (694)
.|+.++|.+++.+.. +.. ..+.+|.+.|++.+|.++--
T Consensus 757 ~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 888888888776553 211 35667777777777765443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.078 Score=47.56 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHh-----CCCCChhHHHH
Q 005487 375 VYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIES-----KLETNEIVMGA 449 (694)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 449 (694)
...+.++..+...|.+.-.+..+++.++...+.++.....+.+...+.||.+.|...++...+. +......+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455677777788889889999999988766667888888888888999999999999977653 22333333444
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005487 450 LLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS 510 (694)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 510 (694)
....|.-++++..|...+++++. .++...|.-.-+..-.|+..+|++.++.|... .|.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCcc
Confidence 44556677888888888888876 44556666666666778899999999999886 4444
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.01 E-value=0.00097 Score=49.36 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC---CCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 581 LLSTLFSACRLHRDIEMGEKIAKLLIEKD----PD---DSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 581 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
++..++..+...|++++|+..+++++++. ++ -..++..+|.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666677777777776666431 11 24467778888888888888888887764
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.63 Score=49.26 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=67.8
Q ss_pred hhhHHHHHHhcCCChhHHHHHHhhCCCCCch--hhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhh
Q 005487 40 LCKSLINLYFSCQNYDYAMLVFKTIDNPLDL--SLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACG 117 (694)
Q Consensus 40 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 117 (694)
..-.-+....+..-++-|..+-+.-..+... +....-..-+.+.|++++|...|-+-... +.|.. ++.-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhc
Confidence 3445566666777777777766654433222 01112223345678888887777766543 33322 344444
Q ss_pred CCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCC
Q 005487 118 GLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMS 168 (694)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 168 (694)
.......--.+++.+.+.|+... ..-..|+.+|.+.++.++-.+..+...
T Consensus 409 daq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 44445555566666666665433 333456667777777777666666555
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0076 Score=57.69 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Q 005487 547 EHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS 625 (694)
Q Consensus 547 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 625 (694)
.++..++-++.+.+++.+|+..-++..+.+| +...+..-+.++...|+++.|+..|++++++.|+|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3566788889999999999999988887665 456777778889999999999999999999999998888888888777
Q ss_pred cCChHHH-HHHHHHHHhCC
Q 005487 626 VKKWDEV-RKIRLKMKELG 643 (694)
Q Consensus 626 ~g~~~~A-~~~~~~~~~~~ 643 (694)
..++.+. .++|..|-..-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7666555 67788875433
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.93 E-value=0.35 Score=45.06 Aligned_cols=198 Identities=21% Similarity=0.163 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCh-HHHHHHHH-
Q 005487 409 AVTFTSVLPACSQLAALEKGKEIHNHIIES-KLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDL-VSWTSMIA- 483 (694)
Q Consensus 409 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 483 (694)
..........+...++...+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555556666666666666555442 2234445555566666677777777777776665 222 22333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC----CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHhh
Q 005487 484 AYGSHGRALEALKLFGEMQQSNARP----DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR--NEHYSCLIDLLG 557 (694)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 557 (694)
.+...|+++.|...+++.... .| ....+......+...++.+.+...+..... ..++ ...+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHH
Confidence 788889999999999998663 33 234444444456778899999999999883 3343 567888889999
Q ss_pred hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 558 RAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 558 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
..++++.|...+.......|+ ...+......+...++.+.+...+++.++..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999998876665 445555555555777899999999999999887
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.017 Score=49.10 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 581 LLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 581 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.+..++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456667778889999999999999999999999999999999999999999999998873
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.26 Score=44.51 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=34.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHcccCChHHHHHHHHHHHHhC
Q 005487 380 MISGYVTVGDYFKALAIYSDMKEVGAK--PDAVTFTSVLPACSQLAALEKGKEIHNHIIESK 439 (694)
Q Consensus 380 l~~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 439 (694)
....+...|++.+|+..|+.+...... --......++.++.+.|+++.|...++.+++.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344556677777777777777765211 112334455566667777777777777766543
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.015 Score=52.99 Aligned_cols=86 Identities=23% Similarity=0.317 Sum_probs=42.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCC
Q 005487 487 SHGRALEALKLFGEMQQSNARPD----SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGR 561 (694)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 561 (694)
..|++..|...|...++.. |+ +..+..|..++...|++++|..+|..+.+.++-.|. ++.+..|+....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3344555555555555542 22 134445555555555555555555555544433333 2344444555555555
Q ss_pred HHHHHHHHHhCCC
Q 005487 562 LQEAYGILQSTPE 574 (694)
Q Consensus 562 ~~~A~~~~~~~~~ 574 (694)
.++|...|+++.+
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.012 Score=53.61 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=78.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC----CHHHHHHHH
Q 005487 512 TFLALLSACSHAGWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE----DAGLLSTLF 586 (694)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~ 586 (694)
.|+..+ .+.+.|++..|...|...++.+.-.+ .+..+..|++.+..+|++++|...|..+.+..| .+..+..++
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344333 35667889999999999886543222 245677889999999999999988887665333 357788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCccHH
Q 005487 587 SACRLHRDIEMGEKIAKLLIEKDPDDSSTYI 617 (694)
Q Consensus 587 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 617 (694)
.+..+.|+.++|...++++++..|+.+.+-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888899999999999999999998766543
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.78 E-value=0.6 Score=45.60 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCCC--CchhhHHHHHHHHHccCChhHHHHHHHHhhhC
Q 005487 24 IIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDNP--LDLSLWNGLMASYTKNYMYITALELFDMLLQN 99 (694)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 99 (694)
++.+++.++ |-|+..|..|++-|.-+|.+++-+++++++..| -...+|..-+++-.-..++..+..+|.+.+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 344444333 344555555555555555555555555555332 11224444444444445555555555555443
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.77 E-value=0.032 Score=45.60 Aligned_cols=120 Identities=16% Similarity=0.074 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 005487 478 WTSMIAAYGSHGRALEALKLFGEMQQSNARP---DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLID 554 (694)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 554 (694)
+..-.....+.|++++|.+.|+.+...- +. ....-..++.++.+.+++++|...+++.++-+...|++. |.....
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~ 90 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMR 90 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHH
Confidence 3334444556677777777777766651 21 224455566666777777777777777664433333322 222222
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 555 LLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 555 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
++..-...+ ..+..+...+. ..+....|...|+++++.-|++..+
T Consensus 91 gL~~~~~~~---~~~~~~~~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 91 GLSYYEQDE---GSLQSFFRSDR-------------DPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHhh---hHHhhhccccc-------------CcHHHHHHHHHHHHHHHHCcCChhH
Confidence 222211111 11111111111 1233668899999999999987543
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.77 E-value=0.79 Score=46.80 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=90.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhh
Q 005487 72 LWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMY 151 (694)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (694)
.|..|+.--.+....+.+...+..++.. .|.-.--|.....--.+.|..+.+.++|++.+.. ++.+...|......+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 5666776555555557777778888755 2332334455555556788888899999988764 677777777776644
Q ss_pred -hcCCChHHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005487 152 -AKCNSFECAVKMFDEMSE------RDVASWNTVISCYYQDGQAEKALELFKKMRG 200 (694)
Q Consensus 152 -~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 200 (694)
...|+.+...+.|+.... .+...|...|..-...+++.....+|+..++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 355788888888887654 4666788888888889999999999999887
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.74 E-value=0.013 Score=46.06 Aligned_cols=93 Identities=19% Similarity=0.138 Sum_probs=73.2
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----cHHHHHHHHhhc
Q 005487 552 LIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS----TYIVLSNMYASV 626 (694)
Q Consensus 552 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~ 626 (694)
-+-++...|+++.|++.|.+....-| .+..|+.-..+++-+|+.++|..-+++++++..+... +|...+.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35567788899999998888776554 5778888888888899999999999999988644322 466678888888
Q ss_pred CChHHHHHHHHHHHhCCC
Q 005487 627 KKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 627 g~~~~A~~~~~~~~~~~~ 644 (694)
|+-+.|..-|+...+.|-
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 999999988888877664
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.73 E-value=0.9 Score=46.97 Aligned_cols=125 Identities=12% Similarity=0.133 Sum_probs=57.8
Q ss_pred CCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCChhHHHHH
Q 005487 154 CNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPN----SVTLTTVISSCARLMDLDRGKEI 229 (694)
Q Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~ 229 (694)
.|++++|++++-++..+|. .|..+.+.|+|-.+.++++.- |-..| ...++.+...++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666655555443 234444555555444443321 10111 22455555555555555555555
Q ss_pred HHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHH
Q 005487 230 HKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLF 296 (694)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 296 (694)
+...... ...+.++.+..++++-+.+-+.+++ +....-.+...+.+.|.-++|.+.+
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 5432211 1234455555555554444444433 2233344455555555555555544
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.0085 Score=58.82 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005487 546 NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG----LLSTLFSACRLHRDIEMGEKIAKLLIEK 608 (694)
Q Consensus 546 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 608 (694)
...+..++.+|.+.|++++|+..++++.++.|+.. .|..++.+|...|++++|++.+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44566666667777777777777776666666532 3666666676777777777777777765
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.69 E-value=0.38 Score=43.68 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc---HHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 584 TLFSACRLHRDIEMGEKIAKLLIEKDPDDSST---YIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 584 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
.++..|.+.|.+..|..-++.+++.-|+-+.+ +..+..+|...|-.++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 44567888999999999999999887765554 555667799999999998887766543
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.66 E-value=0.0044 Score=45.76 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPE----IRED----AGLLSTLFSACRLHRDIEMGEKIAKLLIEK 608 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 608 (694)
++..++.+|...|++++|+..++++.+ ..++ ..++..++.++...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555555555555554332 1111 234556666677777777777777776653
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=96.59 E-value=0.048 Score=45.71 Aligned_cols=91 Identities=9% Similarity=-0.023 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhc
Q 005487 480 SMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRA 559 (694)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 559 (694)
....-+...|++++|..+|+-+...+ .-|..-+..|..++-..+++++|+..|.....- . .-|+..+...+.++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHh
Confidence 34444556677777777777776653 334555666666666777777777777766521 1 22344455567777777
Q ss_pred CCHHHHHHHHHhCC
Q 005487 560 GRLQEAYGILQSTP 573 (694)
Q Consensus 560 g~~~~A~~~~~~~~ 573 (694)
|+.+.|+..|+.+.
T Consensus 119 ~~~~~A~~~f~~a~ 132 (165)
T PRK15331 119 RKAAKARQCFELVN 132 (165)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777777766
No 236
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.3 Score=46.51 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=87.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005487 509 DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSA 588 (694)
Q Consensus 509 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 588 (694)
...+.+.-+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-.++-++.. .+.-|.-+..+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk----sPIGy~PFVe~ 753 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK----SPIGYLPFVEA 753 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----CCCCchhHHHH
Confidence 34456666667788899999988888775 5888888888999999999998877777655 24556677889
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 589 CRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 589 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
|.+.|+.++|..++-++-. +.....+|.+.|++.+|.+.--+
T Consensus 754 c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999988877532 12678899999999999876543
No 237
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.55 E-value=0.82 Score=44.25 Aligned_cols=105 Identities=18% Similarity=0.301 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCh
Q 005487 346 NSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAAL 425 (694)
Q Consensus 346 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 425 (694)
.+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++...+-.. +-.+..|..++.+|...|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455566677777777777777777777777778888888887766654321 12345667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005487 426 EKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKV 466 (694)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 466 (694)
..|..+...+ + +..-+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 7776666552 1 13456667777777776543
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.48 E-value=0.024 Score=53.13 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=23.1
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHcccCChHHHHH
Q 005487 384 YVTVGDYFKALAIYSDMKEV--GAKPDAVTFTSVLPACSQLAALEKGKE 430 (694)
Q Consensus 384 ~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~ 430 (694)
+....+.++|+..|.+-... .......++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 33456667777666665442 011122344444555555555555443
No 239
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.46 E-value=0.022 Score=49.80 Aligned_cols=88 Identities=15% Similarity=0.297 Sum_probs=62.5
Q ss_pred CCcccHHHHHHHHHh-----CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC----------------ChhHHHH
Q 005487 170 RDVASWNTVISCYYQ-----DGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLM----------------DLDRGKE 228 (694)
Q Consensus 170 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~ 228 (694)
.+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+.. +-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 556666666666654 3556666667777888888888888888887765421 3455778
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 005487 229 IHKEFIKDGFVSDSYISSALVDMYGKCGC 257 (694)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (694)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888887765543
No 240
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.42 E-value=1.2 Score=44.48 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHc-CCCchhHHHHHHHhhhcCCChHHHHHHhc
Q 005487 87 ITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTG-FLLDVVIASSTAGMYAKCNSFECAVKMFD 165 (694)
Q Consensus 87 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 165 (694)
.+...+|+..... ++.|...|...+..|.+.+.+.+...+|..|+... ..|+..++.+.-. |-..-+++.|+.+|.
T Consensus 88 ~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHH
Confidence 4667788888776 67799999999999999998999999999998753 3455555544332 334445899999988
Q ss_pred cCCC
Q 005487 166 EMSE 169 (694)
Q Consensus 166 ~~~~ 169 (694)
+..+
T Consensus 165 rgLR 168 (568)
T KOG2396|consen 165 RGLR 168 (568)
T ss_pred HHhh
Confidence 8765
No 241
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.40 E-value=0.048 Score=52.08 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHcccCChHHHHHHHHHHHH----hCC-CCChh
Q 005487 376 YWNVMISGYVTVGDYFKALAIYSDMK----EVGAK-PDAVTFTSVLPACSQLAALEKGKEIHNHIIE----SKL-ETNEI 445 (694)
Q Consensus 376 ~~~~l~~~~~~~~~~~~A~~~~~~m~----~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 445 (694)
+|..+...|--.|+++.|+..-+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444445555566666655433321 11211 1223445555566666666666666665432 221 12334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005487 446 VMGALLDMYAKCGAVDEAFKVFNELPE---------RDLVSWTSMIAAYGSHGRALEALKLFGEMQ 502 (694)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (694)
...+|...|.-..+++.|+.++.+-.. -...++-+|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455566666666666666666654332 123355566667777777777766665544
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.35 Score=43.14 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHH
Q 005487 478 WTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQP----RNEHYSCLI 553 (694)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~ 553 (694)
++.-...|...|.++.|-..+++.-+. .+..++++|+++|++...-..... -.+.+..+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 344445555556555555555444321 122344555555554432111111 123444556
Q ss_pred HHhhhcCCHHHHHHHHHhCCC------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCccHHHHHHH
Q 005487 554 DLLGRAGRLQEAYGILQSTPE------IREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEK----DPDDSSTYIVLSNM 622 (694)
Q Consensus 554 ~~~~~~g~~~~A~~~~~~~~~------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~ 622 (694)
+.|.+..++++|-..+.+-.. .-++. ..+...+..+.-..|+..|+..++..-+. .|++..+..+|...
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 677777777766655554321 11221 22344444555566788888877775543 35566666666655
Q ss_pred HhhcCChHHHHHHH
Q 005487 623 YASVKKWDEVRKIR 636 (694)
Q Consensus 623 ~~~~g~~~~A~~~~ 636 (694)
| ..|+.+++.+++
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 4 456666665443
No 243
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.33 E-value=0.033 Score=48.74 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCCChhHHHHHHHHHHc-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc----------------CChhhh
Q 005487 269 VLKSVVAWNALIAGYSS-----RGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRS----------------GQLKHG 327 (694)
Q Consensus 269 ~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a 327 (694)
...+..+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 34455666666666653 466777777888888888888888888888876542 134557
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 005487 328 KVMHGYIIRNKIQGDVFINSSLIDLYFKCGR 358 (694)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (694)
.+++++|...|+-||..++..+++.+.+.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7888888888888888888888777766654
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.29 E-value=0.24 Score=49.17 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=73.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCC-CCCH--HHHHHHH
Q 005487 510 SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEI-REDA--GLLSTLF 586 (694)
Q Consensus 510 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~--~~~~~l~ 586 (694)
...-..+..++.+.|+.++|++.++++.++............|+.++...+.+.++..++.+...+ -|.. ..|...+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344455677888999999999999999865432223447788999999999999999999997643 2333 2344444
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHhcCCCCCc
Q 005487 587 SACRLHRD---------------IEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 587 ~~~~~~~~---------------~~~A~~~~~~~~~~~p~~~~ 614 (694)
...+..++ -..|.+.+.++++.||.-|.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 33333333 13467889999999987554
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.2 Score=46.27 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=78.1
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHHcCCH
Q 005487 519 ACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLS--TLFSACRLHRDI 595 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~ 595 (694)
.....|++.+|...|+..... .|. ...-..++++|...|+.+.|..++..++....+..... .-+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456677888888888877732 232 44556778888888888888888888774333222211 222333333333
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 596 EMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
.+. ..+++.+..+|+|...-..|+..+...|+.++|.+.+=.+..+
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 2344556678888888889999999999999998877665544
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.22 E-value=0.059 Score=45.68 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHH----hcCCCCChHHH
Q 005487 477 SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMIS----EYNIQPRNEHY 549 (694)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 549 (694)
....++..+...|+++.|..+.+.+.... +.|...+..++.++...|+..+|.+.|+.+.+ +.|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45557777888999999999999999874 45678899999999999999999998887633 56888887654
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.20 E-value=0.014 Score=34.48 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 612 (694)
..|..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888864
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.16 E-value=0.035 Score=47.45 Aligned_cols=92 Identities=21% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhc
Q 005487 553 IDLLGRAGRLQEAYGILQSTPEIRE-D-----AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASV 626 (694)
Q Consensus 553 ~~~~~~~g~~~~A~~~~~~~~~~~p-~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 626 (694)
++-+...|++++|..-|..+...-| . ...|..-+.+..+.+..+.|+....++++++|....+....+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 4455666777777777776655222 2 223444455667778888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhCCC
Q 005487 627 KKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 627 g~~~~A~~~~~~~~~~~~ 644 (694)
.++++|++-++++.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 888888888888776543
No 249
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.4 Score=41.34 Aligned_cols=116 Identities=13% Similarity=0.021 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCCCCHhhH--HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHhhhcCCHHHHH
Q 005487 493 EALKLFGEMQQSNARPDSITF--LALLSACSHAGWVDEGGYYFNLMISEYNIQPRN----EHYSCLIDLLGRAGRLQEAY 566 (694)
Q Consensus 493 ~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 566 (694)
+.....+++...........+ ..+...+...|++++|..-++.... .+.|. ..-..|++.....|++|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 555666666664212122222 2234467888999999999887762 22221 12235678888999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 567 GILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 567 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
..++......-.+.....-+.++...|+.++|+..|+++++.++.
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 999887622212333445567788889999999999999888743
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.17 Score=47.12 Aligned_cols=159 Identities=12% Similarity=-0.000 Sum_probs=71.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHhhhcCCHH
Q 005487 488 HGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYS----CLIDLLGRAGRLQ 563 (694)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~ 563 (694)
.|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++..+ ..|+.+.|. .++..+...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34455555555555543 2334444444444555555555555555555422 123332222 2233444555555
Q ss_pred HHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 564 EAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD----DSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 564 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
+|.+.-+++.+++|. .-........+...|+..++.++.++.-..-.. -..-|-..+-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 555555555544442 223334444444555555555555543211110 011233344445555566666666555
Q ss_pred HHhCCCccCCc
Q 005487 639 MKELGLRKNPG 649 (694)
Q Consensus 639 ~~~~~~~~~~~ 649 (694)
-+-..+.++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 44344444433
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.55 Score=43.46 Aligned_cols=174 Identities=14% Similarity=0.051 Sum_probs=110.9
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 005487 462 EAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYN 541 (694)
Q Consensus 462 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 541 (694)
...++++....+....-..-.......|++..|..+|....... +-+......++.+|...|+.+.|..++..+-.+..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 33444444444322222223345667788888888888888763 33456777788888999999999888887642210
Q ss_pred CCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCccHHHH
Q 005487 542 IQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKD--PDDSSTYIVL 619 (694)
Q Consensus 542 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l 619 (694)
.........-+..+.+.....+...+-++..+.+.|...-..++..+...|+.+.|.+.+-..++.+ -+|..+...+
T Consensus 200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 1111122233455556555555555555555333366777788888888999999999888888765 3477788888
Q ss_pred HHHHhhcCChHHHHHHHH
Q 005487 620 SNMYASVKKWDEVRKIRL 637 (694)
Q Consensus 620 ~~~~~~~g~~~~A~~~~~ 637 (694)
..++...|..+.+.-.++
T Consensus 279 le~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 279 LELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 888888875555443333
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.04 E-value=0.43 Score=46.58 Aligned_cols=168 Identities=13% Similarity=0.014 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHhHHhcCCCCChHH
Q 005487 475 LVSWTSMIAAYGSHGRALEALKLFGEMQQSN---ARPDSITFLALLSACSH---AGWVDEGGYYFNLMISEYNIQPRNEH 548 (694)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~ 548 (694)
+.....++-+|....+++.-+++++.+...- +......-...+-++.+ .|+.++|++++..+... .-.+++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHH
Confidence 3344567778999999999999999998751 11122223334446667 89999999999996533 55678888
Q ss_pred HHHHHHHhhh---------cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC-HH---HHHHHH---HH-HHhcC--
Q 005487 549 YSCLIDLLGR---------AGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRD-IE---MGEKIA---KL-LIEKD-- 609 (694)
Q Consensus 549 ~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~-~~~~~-- 609 (694)
|..+++.|-. ...+++|+..|.+.-+.+|+...--+++..+...|. .+ +...+. .. ..+.+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 9888877642 235789999999988777765433333333333332 22 112211 11 11111
Q ss_pred --CCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 610 --PDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 610 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
-.+-..+-.++.+..-.|+.++|.+..++|....
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 1243445567888888999999999999998653
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.95 E-value=0.016 Score=34.34 Aligned_cols=32 Identities=25% Similarity=0.122 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
..|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777788888888888888888888875
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.93 E-value=0.38 Score=49.70 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHhhhcCCHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHcCCHH
Q 005487 523 AGWVDEGGYYFNLMISEYNIQPRNEHYS-CLIDLLGRAGRLQEAYGILQSTPEIRE-----DAGLLSTLFSACRLHRDIE 596 (694)
Q Consensus 523 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~ 596 (694)
....+.|.++++.+.+. -|+...|. .-++.+...|++++|++.++++...+. ....+..++..+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777777632 35544432 335666667777777777776553221 2234455666667777777
Q ss_pred HHHHHHHHHHhcCCCCCccHHH-HHHHHhhcCCh-------HHHHHHHHHHHh
Q 005487 597 MGEKIAKLLIEKDPDDSSTYIV-LSNMYASVKKW-------DEVRKIRLKMKE 641 (694)
Q Consensus 597 ~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~~ 641 (694)
+|...+.++.+.+.-+...|.. .+-++...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7777777777765544444433 33345566766 777777766643
No 255
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.76 E-value=0.018 Score=53.45 Aligned_cols=103 Identities=10% Similarity=-0.030 Sum_probs=72.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHc
Q 005487 515 ALLSACSHAGWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLH 592 (694)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 592 (694)
.-..-|.++|.+++|+.+|.... .+.| ++.++..-+.+|.+..++..|..--+.+..+... ...|..-+.+-...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34567889999999999998877 5567 6667777788898888888776665555432221 22344444555567
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHH
Q 005487 593 RDIEMGEKIAKLLIEKDPDDSSTYIVLS 620 (694)
Q Consensus 593 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 620 (694)
|+..+|..-++.++++.|++.+.--.++
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 8899999999999999998644433333
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.72 E-value=0.82 Score=36.54 Aligned_cols=141 Identities=11% Similarity=0.099 Sum_probs=82.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHH
Q 005487 485 YGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQE 564 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 564 (694)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+.| .|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHH
Confidence 34567888888888888774 3555566665555555555556666666543322222 233333
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 565 AYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 565 A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
....+-.+ ..+.......+.....+|..++-..++..+.+.+..+|+....++.+|.+.|+..++.++++++-+.|+
T Consensus 75 Vi~C~~~~---n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKR---NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHT---T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHh---cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33333222 223445556667777888888888888888776666888888999999999999999999998888886
Q ss_pred c
Q 005487 645 R 645 (694)
Q Consensus 645 ~ 645 (694)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.60 E-value=0.041 Score=43.39 Aligned_cols=59 Identities=15% Similarity=-0.017 Sum_probs=53.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 586 FSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 586 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
+.+....|+.+.|++.|.+++.+-|..+++|++.+.++.-+|+.++|++-+++..+...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 34567789999999999999999999999999999999999999999999998765543
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.60 E-value=0.42 Score=49.40 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=90.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-CCh---------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 005487 449 ALLDMYAKCGAVDEAFKVFNELPE-RDL---------VSWTSMIAAYGS----HGRALEALKLFGEMQQSNARPDSITFL 514 (694)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~ 514 (694)
.++...+-.|+-+.+++.+....+ .+. ..|+..+..+.. ..+.+.|.++++.+.+. .|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 344444445555555555544433 111 123333333332 34567788888888875 56665554
Q ss_pred HH-HHHHHccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHH-
Q 005487 515 AL-LSACSHAGWVDEGGYYFNLMISEYNIQPR--NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSAC- 589 (694)
Q Consensus 515 ~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~- 589 (694)
.. .+.+...|++++|++.|+.......--|. .-.+.-++..+.-.+++++|...+..+.+... +..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 44 34567778888888888865521111111 22455667777888888888888888775333 234444444443
Q ss_pred HHcCCH-------HHHHHHHHHHHhc
Q 005487 590 RLHRDI-------EMGEKIAKLLIEK 608 (694)
Q Consensus 590 ~~~~~~-------~~A~~~~~~~~~~ 608 (694)
...++. ++|.+.+.++-..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 345666 6777777766543
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.54 E-value=1.6 Score=43.55 Aligned_cols=147 Identities=14% Similarity=0.016 Sum_probs=86.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--hH
Q 005487 473 RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARP---DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR--NE 547 (694)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~ 547 (694)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-+..+...|+..+|+..++...+. .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344578888888889999999998888887753222 3344445566677788888888888887741 11111 11
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC--CCC--CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCCccHH
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQST--PEI--REDAGLLSTLFSACRLH------RDIEMGEKIAKLLIEKDPDDSSTYI 617 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~--~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~ 617 (694)
....+...+.. . ......- ... ..-...+..++..+... ++.+.+...++.+.+..|....+|.
T Consensus 223 ~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 223 SNAELKSGLLE--S----LEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred cHHHHhhcccc--c----cccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 11111111000 0 0000000 000 00112333444444444 7899999999999999999989999
Q ss_pred HHHHHHhhc
Q 005487 618 VLSNMYASV 626 (694)
Q Consensus 618 ~l~~~~~~~ 626 (694)
.++..+.+.
T Consensus 297 ~~a~~~~~~ 305 (352)
T PF02259_consen 297 SWALFNDKL 305 (352)
T ss_pred HHHHHHHHH
Confidence 888876654
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=0.92 Score=37.99 Aligned_cols=125 Identities=7% Similarity=0.022 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhh
Q 005487 479 TSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGR 558 (694)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 558 (694)
..++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+...+++. .++.......++.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345556666667777777777777665 345566666776666543 3333344431 1122223345666666
Q ss_pred cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCccHHHHHHHHh
Q 005487 559 AGRLQEAYGILQSTPEIREDAGLLSTLFSACRLH-RDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYA 624 (694)
Q Consensus 559 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 624 (694)
.+.++++.-++.++. .+...+..+..+ ++++.|.+++.+ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~-------~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDG-------NFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhc-------CHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 677777777776654 122233333333 677777777665 235556666665544
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.43 E-value=0.93 Score=39.74 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=20.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
++|..|+..+...|+.++|..+|+.....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35677777777777777777777765543
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.32 E-value=3.2 Score=40.83 Aligned_cols=429 Identities=9% Similarity=0.024 Sum_probs=219.4
Q ss_pred hHHHHHHhhCC-CCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHH
Q 005487 55 DYAMLVFKTID-NPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLI 133 (694)
Q Consensus 55 ~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 133 (694)
.+-+++=++++ +|....+|..|+.-+..+|.+++..+++++|... ++.-..+|...+.+-...+++...+.+|.+.+
T Consensus 26 ~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 26 GDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred chHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 34445556665 4766669999999999999999999999999865 66667788888888888899999999999998
Q ss_pred HHcCCCchhHHHHHHHhhhcCC-----C-hHHHHHHhccCC-----C-CCcccHHHHHHHHH---------hCCChhHHH
Q 005487 134 KTGFLLDVVIASSTAGMYAKCN-----S-FECAVKMFDEMS-----E-RDVASWNTVISCYY---------QDGQAEKAL 192 (694)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~g-----~-~~~A~~~~~~~~-----~-~~~~~~~~li~~~~---------~~~~~~~a~ 192 (694)
...+. ...|...+.--.+.+ + -....+.|+-.. + .+...|+..+..+- ++.+++...
T Consensus 104 ~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 87655 444554444222221 1 111112222222 1 34445665554332 233445566
Q ss_pred HHHHHHHhCCCCCChhhH------HHHHH-HHhc------cCChhHHHHHHHHHHHh--CCC----CchhHHHH------
Q 005487 193 ELFKKMRGSGFQPNSVTL------TTVIS-SCAR------LMDLDRGKEIHKEFIKD--GFV----SDSYISSA------ 247 (694)
Q Consensus 193 ~~~~~m~~~~~~~~~~~~------~~ll~-~~~~------~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~------ 247 (694)
+.|..|...-+.-=...| ..=+. +-++ ..-+-.|.+.++++... |+. .+..+++.
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 666666553111001111 11111 1111 11234566666666532 321 12222222
Q ss_pred -----HHHhhHh-----cCChH--HHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 005487 248 -----LVDMYGK-----CGCLE--MAREVFEQTVL---KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTIS 312 (694)
Q Consensus 248 -----l~~~~~~-----~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 312 (694)
.|..-.. .|+.- ...-+++.... -....|-..-..+...++-+.|+.....-... .|+...+
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~- 338 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMF- 338 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhee-
Confidence 2221111 12221 22223333321 24455555555666778888888776554332 3331111
Q ss_pred HHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhcCCCCChhHHHHHHHH
Q 005487 313 SVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFK---------CGRVSSAENVFEKMSKTDVVYWNVMISG 383 (694)
Q Consensus 313 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 383 (694)
+-..+.-..+.+.+...|+..... |.+-|.+ .|+++.-.+++-.-...-...|...+..
T Consensus 339 -lse~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~ 406 (660)
T COG5107 339 -LSEYYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNY 406 (660)
T ss_pred -HHHHHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHH
Confidence 112222233333333333322111 1111110 1112111111111111223445556666
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005487 384 YVTVGDYFKALAIYSDMKEVG-AKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDE 462 (694)
Q Consensus 384 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (694)
..+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...- +.+.......+..+...++-+.
T Consensus 407 v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi~inde~n 484 (660)
T COG5107 407 VLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLIRINDEEN 484 (660)
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCcHHH
Confidence 666666777777777777776 4555566666665443 466666666666543332 2223333345555666777777
Q ss_pred HHHHHhhCCC---CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005487 463 AFKVFNELPE---RD--LVSWTSMIAAYGSHGRALEALKLFGEMQQS 504 (694)
Q Consensus 463 A~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (694)
|..+|+.... .+ ...|..++.--...|+...+..+-++|...
T Consensus 485 araLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 485 ARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7777775443 12 235666666666667777776666666653
No 263
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.25 E-value=5.5 Score=43.04 Aligned_cols=116 Identities=10% Similarity=-0.048 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCH--hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHH
Q 005487 488 HGRALEALKLFGEMQQSN-ARPDS--ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQE 564 (694)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 564 (694)
..+.+.|...+....... +.+.. .....+.......+..+++...++... ....+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHH
Confidence 345677777777664432 22221 222233222222222455555555443 112233444444555557777777
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005487 565 AYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLI 606 (694)
Q Consensus 565 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 606 (694)
+...+..|+.... ......=++.++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777654211 22222223444455677777777777764
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.17 E-value=0.31 Score=41.95 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=76.6
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCH
Q 005487 520 CSHAGWVDEGGYYFNLMISEYNIQPR---NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDI 595 (694)
Q Consensus 520 ~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~ 595 (694)
+...|++++|..-|..++....-.+. ...|..-+.++.+.+.++.|+.--.+++++.|.. ..+..-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45567777777777666632111111 1234455667777888888887777777666643 3344445567777888
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHH--HHHHHHHhCC
Q 005487 596 EMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVR--KIRLKMKELG 643 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~~ 643 (694)
+.|++-|+++++.+|....+....+++--......+.. +++.++.+.|
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888988888877666666655544444444433 3455555544
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.11 E-value=0.19 Score=43.79 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=51.9
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 005487 520 CSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG-LLSTLFSACRLHRDIEM 597 (694)
Q Consensus 520 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 597 (694)
|-..|-++-|.-=|.+.. .+.|+ +.+|+.++--+...|+++.|.+.|+...+.+|... ....-+.++.--|++..
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 444455555555555554 45565 44666666666667777777777776666655432 22222223333566666
Q ss_pred HHHHHHHHHhcCCCCC
Q 005487 598 GEKIAKLLIEKDPDDS 613 (694)
Q Consensus 598 A~~~~~~~~~~~p~~~ 613 (694)
|.+-+.+--+.+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 6666666666666653
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.10 E-value=0.3 Score=46.14 Aligned_cols=220 Identities=11% Similarity=0.114 Sum_probs=132.6
Q ss_pred HhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHccc
Q 005487 354 FKCGRVSSAENVFEKMSKT------DVVYWNVMISGYVTVGDYFKALAIYSDMKEV--GAKPDA---VTFTSVLPACSQL 422 (694)
Q Consensus 354 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~ 422 (694)
....+.++|+..+.+.... ...++..+..+..+.|.+++++..--.-... ...... ..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777655432 1234555666777777777765542221111 011111 2333444444444
Q ss_pred CChHHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcC
Q 005487 423 AALEKGKEIHNHIIES-KLET---NEIVMGALLDMYAKCGAVDEAFKVFNELPE-----RD----LVSWTSMIAAYGSHG 489 (694)
Q Consensus 423 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~ 489 (694)
.++.+++.+-+.-... |..+ .......+..++...+.++++++.|+...+ .| ...+-.|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555554443321 2112 223445577778888889999998887655 22 236788889999999
Q ss_pred CHHHHHHHHHHHHHc----CCCCCHhh-----HHHHHHHHHccCCHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHh
Q 005487 490 RALEALKLFGEMQQS----NARPDSIT-----FLALLSACSHAGWVDEGGYYFNLMISE---YNIQPR-NEHYSCLIDLL 556 (694)
Q Consensus 490 ~~~~A~~~~~~~~~~----~~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~ 556 (694)
|+++|.-+..+..+. ++..-... ...|.-++...|.+.+|.+..++..+- +|-.|. ......++++|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999887766542 22211222 333444778889999999888887542 232222 23455788999
Q ss_pred hhcCCHHHHHHHHHhCC
Q 005487 557 GRAGRLQEAYGILQSTP 573 (694)
Q Consensus 557 ~~~g~~~~A~~~~~~~~ 573 (694)
-..|+.|.|+.-|+.+.
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 99999999999888876
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.98 E-value=0.67 Score=47.15 Aligned_cols=154 Identities=16% Similarity=0.072 Sum_probs=80.8
Q ss_pred HHhcCChHHHHHHHh--hCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 005487 454 YAKCGAVDEAFKVFN--ELPE-RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGG 530 (694)
Q Consensus 454 ~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 530 (694)
..-.++++++.+... .+.. -.....+.++.-+.+.|.++.|+.+.+.-.. -.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 344566666544443 2221 1233456666666677777777665433221 123344566777666
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 531 YYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 531 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
++.+. .++...|..|++...++|+++-|.+.+++.. -+..+.-.|...|+.+.-..+.+.+...+-
T Consensus 339 ~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 339 EIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK-------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 55432 2355577777777777777777777777765 345555566666777666666666554332
Q ss_pred CCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 611 DDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 611 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
+.....++.-.|+.++..+++.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444455556777777666653
No 268
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.96 E-value=0.46 Score=38.55 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 005487 506 ARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLID 554 (694)
Q Consensus 506 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 554 (694)
+.|+..++..++.+|+..|++..|.++.+...+.++++-+...|..|.+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455666666666666666666666666666666665555555555443
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.93 E-value=0.041 Score=34.93 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHH
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLST 584 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 584 (694)
++..++..|.+.|++++|.++++++.+..|+ ...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4555666666667777777776666665554 334433
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.91 E-value=0.96 Score=38.00 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=60.4
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005487 518 SACSHAGWVDEGGYYFNLMISEYNIQPRNEHY-SCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIE 596 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 596 (694)
..-...++.+++..++..+. -+.|..... ..-+..+...|++.+|+.+++++.+..|....-..++..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34456678888888888887 556764433 33466778889999999999988776676666667777666544434
Q ss_pred HHHHHHHHHHhcCC
Q 005487 597 MGEKIAKLLIEKDP 610 (694)
Q Consensus 597 ~A~~~~~~~~~~~p 610 (694)
.-....+.+++..|
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44555555555554
No 271
>PRK09687 putative lyase; Provisional
Probab=94.91 E-value=3.6 Score=39.16 Aligned_cols=232 Identities=11% Similarity=-0.009 Sum_probs=96.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005487 342 DVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDY----FKALAIYSDMKEVGAKPDAVTFTSVLP 417 (694)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~ 417 (694)
+..+....+..+...|..+-...+..-+..+|+..-...+.++.+.|+. .++...+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3334444444444444433222222222334444444455555555542 3455555554332 234333333333
Q ss_pred HHcccCChH--HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHH
Q 005487 418 ACSQLAALE--KGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHG-RALEA 494 (694)
Q Consensus 418 ~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A 494 (694)
++...+... ........+...-..++..+-...+.++++.++.+....+...+..+|...-...+.++...+ +...+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~ 193 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDI 193 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 333322110 001111111111112344444455556666555333222333333344444444444444432 13344
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 005487 495 LKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE 574 (694)
Q Consensus 495 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 574 (694)
...+..+.. .+|..+-...+.++.+.|+ ..++..+-...+. ++ .....+.++...|.. +|+..+..+.+
T Consensus 194 ~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 194 REAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555443 3455555555555655555 3344444333311 11 122344555555553 45555555554
Q ss_pred CCCCHHHHHHHH
Q 005487 575 IREDAGLLSTLF 586 (694)
Q Consensus 575 ~~p~~~~~~~l~ 586 (694)
..||..+.....
T Consensus 263 ~~~d~~v~~~a~ 274 (280)
T PRK09687 263 KFDDNEIITKAI 274 (280)
T ss_pred hCCChhHHHHHH
Confidence 344544443333
No 272
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.69 E-value=5.4 Score=40.12 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHH
Q 005487 406 KPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMI 482 (694)
Q Consensus 406 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 482 (694)
..|.....+++..+.......-+..+..++...| .+...+..++++|... ..+.-..+|+++.+ .|.+.-..|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4466667777777777777777777777777655 3555666777777777 55666677775554 4444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHh
Q 005487 483 AAYGSHGRALEALKLFGEMQQSNARPDS------ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLL 556 (694)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 556 (694)
..|-+ ++.+.+..+|.++...- -|.. ..|..+.. .-..+.+....+..++.++.|...-...+..+..-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55544 77777777777776652 2311 22333322 113567777777777776666555555666777778
Q ss_pred hhcCCHHHHHHHHHhCCC
Q 005487 557 GRAGRLQEAYGILQSTPE 574 (694)
Q Consensus 557 ~~~g~~~~A~~~~~~~~~ 574 (694)
....++++|++++..+.+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 888888888888887775
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.46 E-value=2.2 Score=43.57 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=73.7
Q ss_pred HHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005487 417 PACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALK 496 (694)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 496 (694)
......++++.+.+..+.-.-. ...+....+.++.-+.+.|.++.|+.+-+. + ..-+....+.|+.+.|.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHH
Confidence 3344567777766655311100 011244567777778888888888776443 2 223455567788877776
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHh
Q 005487 497 LFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQS 571 (694)
Q Consensus 497 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 571 (694)
+.++ .++...|..|......+|+++-|.+.|.+.. -+..|.-.|.-.|+.+.-.++.+.
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHH
Confidence 5433 2366788888888888888888888887765 145566677777776655444443
No 274
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=8 Score=40.83 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=27.9
Q ss_pred HHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHh
Q 005487 78 ASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKAC 116 (694)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (694)
..|..-|.+++|+++.-.......+.++.....+++.-|
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~ 105 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKC 105 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHH
Confidence 568888999999998777654445666777766666544
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.30 E-value=0.092 Score=30.93 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 581 LLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 581 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
+|..++..+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777664
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.5 Score=44.21 Aligned_cols=118 Identities=10% Similarity=-0.040 Sum_probs=93.5
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC-CCCCHHHHH----HHHHHHHHcCCH
Q 005487 521 SHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE-IREDAGLLS----TLFSACRLHRDI 595 (694)
Q Consensus 521 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~----~l~~~~~~~~~~ 595 (694)
...|+..+|-..|++++++ .+.|.-.+...-+++.-.|+.+.-...++++.- ..++.+.+. .+.-.+...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4568889999999999854 344555666667788888999988888888653 356654333 233345678999
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 596 EMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
++|+....+++++||.|..+...++.++.-.|+..++.+...+-.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 999999999999999999999999999999999999999887643
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.16 E-value=0.084 Score=31.68 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=20.4
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 615 TYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 615 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788889999999999999888844
No 278
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.07 E-value=0.68 Score=37.59 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHH
Q 005487 541 NIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE---IREDAGLLSTLFSACRL 591 (694)
Q Consensus 541 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~ 591 (694)
...|+..+..+++.+|+..|++..|+++++...+ ++-+..+|..|+..+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4567777777777777777788887777776544 34456677777665444
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=1.5 Score=36.94 Aligned_cols=129 Identities=9% Similarity=0.027 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHH--
Q 005487 475 LVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSI-TFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSC-- 551 (694)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-- 551 (694)
...|..-+. +.+.+..++|+.-|..+.+.|...-+. ....+.....+.|+...|+..|+++-+. .|.+.....
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHH
Confidence 334444433 456678888888888888876432221 2222233566778888888888888743 333333222
Q ss_pred ---HHHHhhhcCCHHHHHHHHHhCCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005487 552 ---LIDLLGRAGRLQEAYGILQSTPE-IRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIE 607 (694)
Q Consensus 552 ---l~~~~~~~g~~~~A~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 607 (694)
-+.++...|-+++.....+.+.. ..| ....-..|+.+..+.|++.+|...|+.+..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 24456677888777777766553 122 123344566666777888888887777664
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.87 E-value=0.4 Score=39.36 Aligned_cols=55 Identities=11% Similarity=-0.001 Sum_probs=42.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 590 RLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 590 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
...++.++++.++..+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3467788888888888888888888888888888888888888888887766553
No 281
>PRK10941 hypothetical protein; Provisional
Probab=93.70 E-value=0.5 Score=44.25 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEE
Q 005487 582 LSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNPGCSWIEIGDRIQP 661 (694)
Q Consensus 582 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (694)
...+-.++.+.++++.|..+.+.++.+.|+++.-+...|-+|.+.|.+..|..-++...+.-+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P----------------- 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP----------------- 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----------------
Confidence 456677888999999999999999999999999999999999999999999999998876553
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHhh
Q 005487 662 FFAEDKFYPQADMVYECLAILAGHME 687 (694)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (694)
.=|.+..+..+|.++.++..
T Consensus 247 ------~dp~a~~ik~ql~~l~~~~~ 266 (269)
T PRK10941 247 ------EDPISEMIRAQIHSIEQKQI 266 (269)
T ss_pred ------CchhHHHHHHHHHHHhhcCc
Confidence 23455666667777766543
No 282
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.59 E-value=13 Score=40.32 Aligned_cols=247 Identities=11% Similarity=-0.067 Sum_probs=120.1
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 005487 387 VGDYFKALAIYSDMKEVG-AKPDAV--TFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEA 463 (694)
Q Consensus 387 ~~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (694)
..+.+.|..++....... ..+... ....+.......+..+.+...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777664432 222211 12222222222211344444444332211 2333344444444567777777
Q ss_pred HHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHH-HHHHHHhHHh
Q 005487 464 FKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEG-GYYFNLMISE 539 (694)
Q Consensus 464 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 539 (694)
...+..|.. ....-..=+.+++...|+.++|..+|+++.. .. +|..++.+ .+.|..-.. ......-...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhhh
Confidence 777777654 2222333456666667777777777777633 11 22222221 111211000 0000000000
Q ss_pred cCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCccH
Q 005487 540 YNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKD---PDDSSTY 616 (694)
Q Consensus 540 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~ 616 (694)
+ +. ..-..-+..+...|+...|...+..+... .+......+.......|.++.++....+....+ -..|..|
T Consensus 405 --~-~~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 405 --L-TQ-GPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred --h-cc-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 0 00 01123355667789999999888877643 455556666666777888888887776543321 1234456
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCccC
Q 005487 617 IVLSNMYASVKKWDEVRKIRLKMKELGLRKN 647 (694)
Q Consensus 617 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 647 (694)
......+.+.-..+.++-.---..+.+..+.
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 6666666666666666543333334554443
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.58 E-value=1.5 Score=43.89 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHH
Q 005487 485 YGSHGRALEALKLFGEMQQSNARPDS-ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQ 563 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 563 (694)
.-+..++..-++.-+++.+. .||- ..|..|. -.......++.+++++..+... ..+.. .......|..-
T Consensus 178 AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE-----~~lg~-s~~~~~~g~~~ 247 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE-----ASLGK-SQFLQHHGHFW 247 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH-----Hhhch-hhhhhcccchh
Confidence 33455666666666666663 4553 3333332 2334567888888888764211 00000 00000111110
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 564 EAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD--DSSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 564 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
+.+.+ ....+-..+-..++..+.+.|+.++|+..++.+++..|. +-.++.+|+..+...+.+.++..++.+--+
T Consensus 248 ---e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 248 ---EAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred ---hhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 00000 001222333455666777888888888888888887765 455788888888888888888888887655
Q ss_pred CCCccCC
Q 005487 642 LGLRKNP 648 (694)
Q Consensus 642 ~~~~~~~ 648 (694)
....+..
T Consensus 324 i~lpkSA 330 (539)
T PF04184_consen 324 ISLPKSA 330 (539)
T ss_pred ccCCchH
Confidence 4444443
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.54 E-value=0.47 Score=39.80 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=35.7
Q ss_pred hhcCCHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCC
Q 005487 557 GRAGRLQEAYGILQSTPEIREDAGLLS-TLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKK 628 (694)
Q Consensus 557 ~~~g~~~~A~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 628 (694)
.+.++.+++..++..+....|...... .-+..+...|++.+|+.+++.+.+..|..+..--.++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 344555555555555544455433322 223334455555555555555555555544444445544444444
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.52 E-value=3.9 Score=34.17 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=17.0
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhc
Q 005487 112 VLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAK 153 (694)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (694)
++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333333344444444444444433 2333344444444443
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.50 E-value=0.14 Score=30.67 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005487 582 LSTLFSACRLHRDIEMGEKIAKLLIEK 608 (694)
Q Consensus 582 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 608 (694)
|..++..|...|++++|++++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777888888888888888885543
No 287
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.36 E-value=0.57 Score=42.76 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=71.1
Q ss_pred HHHhccCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC------------
Q 005487 161 VKMFDEMS--ERDVASWNTVISCYYQD-----GQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLM------------ 221 (694)
Q Consensus 161 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 221 (694)
+..|..+. ++|..+|-..+..+... +..+=....+..|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 46777777777766543 556666777888899999999999999988765432
Q ss_pred ----ChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 005487 222 ----DLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGC 257 (694)
Q Consensus 222 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 257 (694)
+-.-+..++++|..+|+.||..+-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 233467788888888998988888888888877664
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.31 E-value=3.6 Score=33.09 Aligned_cols=135 Identities=12% Similarity=0.117 Sum_probs=73.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChHHH
Q 005487 385 VTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIES-KLETNEIVMGALLDMYAKCGAVDEA 463 (694)
Q Consensus 385 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 463 (694)
.-.|..++..++..+...+ .+..-++.++--....-+-+...+.++.+-+. ++.+ -.-...++.+|...|...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~s-- 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLS-- 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchH--
Confidence 3457777777777777664 34444555554444444444455555444221 1111 011223444554444332
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHH
Q 005487 464 FKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMIS 538 (694)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 538 (694)
......+..+..+|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+
T Consensus 87 ------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 87 ------------EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 233445667778888888888888887643 77888888888888888988888888888873
No 289
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.14 Score=45.30 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 560 GRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 560 g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
.+++.|+..|.++....|.. ..|..=+..+.+.++++.+..--.+++++.|+....++.|+..+.....+++|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 33444444444444344433 22233333333444444444444444444444444444444444444444554444444
Q ss_pred H
Q 005487 639 M 639 (694)
Q Consensus 639 ~ 639 (694)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 4
No 290
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.24 E-value=6.6 Score=35.96 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=34.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhC
Q 005487 382 SGYVTVGDYFKALAIYSDMKEVGA--KPDAVTFTSVLPACSQLAALEKGKEIHNHIIESK 439 (694)
Q Consensus 382 ~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 439 (694)
..-.+.|++++|.+.|+.+..... +-...+...++-++.+.++++.|....++....-
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 334566777777777777765421 1123444455556666667777766666665543
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.06 E-value=0.099 Score=30.84 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCCchhhhHHHHHHhcCCChhHHH
Q 005487 26 HQKVVTLGLQNNIALCKSLINLYFSCQNYDYAM 58 (694)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 58 (694)
+++.++.. |.+..+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556665 666677777777777777777664
No 292
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.03 E-value=5.4 Score=37.00 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 583 STLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 583 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
......|..+|.+.+|.++.++++.++|-+...+..|..+|...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445678889999999999999999999999999999999999999888888877763
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.92 E-value=8.9 Score=36.63 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHhhCCC--CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005487 446 VMGALLDMYAKCGAVD---EAFKVFNELPE--RD-LVSWTSMIAAYGSHGRALEALKLFGEMQQS 504 (694)
Q Consensus 446 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (694)
++..++.+|...+..+ +|..+++.+.. ++ +..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555554433 23333333322 22 233333444444456666666666666654
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=17 Score=39.27 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=63.6
Q ss_pred HHHhhhcCCChHHHHHHhccCCCCCccc----HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 005487 147 TAGMYAKCNSFECAVKMFDEMSERDVAS----WNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMD 222 (694)
Q Consensus 147 l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 222 (694)
-+.++.+...++-|+.+-+.-.. +... .....+.+.+.|++++|..-|-+-... +.|. .++.-+.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 34445555666666666554332 1111 222334455678888887777665543 2222 23344444444
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCC
Q 005487 223 LDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTV 269 (694)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 269 (694)
...--.+++.+.+.|+.. ..-...|+.+|.+.++.++-.++.+...
T Consensus 413 IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 445555667777776443 3334567777777777777776666554
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.71 E-value=0.13 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.5
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
.+|..+|.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987644
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=7.7 Score=34.79 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC--HHHHH-----HHHHHHHHc
Q 005487 524 GWVDEGGYYFNLMISEYNIQPR----NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED--AGLLS-----TLFSACRLH 592 (694)
Q Consensus 524 g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~-----~l~~~~~~~ 592 (694)
.+++.|+..|+..-.-+..... ...+..++..-...+++.+|+++|+++.....+ ..-|. .-...|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4566666666665432221111 223444556666788999999999986642222 22221 112234444
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCcc--HHHHHHHHh
Q 005487 593 -RDIEMGEKIAKLLIEKDPDDSST--YIVLSNMYA 624 (694)
Q Consensus 593 -~~~~~A~~~~~~~~~~~p~~~~~--~~~l~~~~~ 624 (694)
.|.-.+...+++-.+++|.-..+ +..|-.++.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 78888899999999999974443 444444443
No 297
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.42 E-value=0.78 Score=41.90 Aligned_cols=97 Identities=9% Similarity=0.051 Sum_probs=67.1
Q ss_pred HHHHhhCC--CCCchhhHHHHHHHHHc-----cCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCC----------
Q 005487 58 MLVFKTID--NPLDLSLWNGLMASYTK-----NYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLG---------- 120 (694)
Q Consensus 58 ~~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------- 120 (694)
++.|..++ +++.. +|-..+..+.+ ++..+=....++.|.+- |+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~-sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKD-SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhccCcccccHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 45555554 34544 77777777754 35566666677788887 88889999999988775443
Q ss_pred ------CchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCC
Q 005487 121 ------SVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNS 156 (694)
Q Consensus 121 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 156 (694)
.-+-+.+++++|...|+.||..+-..+++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224466777777777777777777777777776653
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.33 E-value=0.34 Score=45.34 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=76.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHhhh
Q 005487 481 MIAAYGSHGRALEALKLFGEMQQSNARP-DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDLLGR 558 (694)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 558 (694)
-..-|.++|.+++|+..|.+.+.. .| |++++..-..+|.+...+..|..-...++. +.. -...|..-+.+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 345799999999999999999885 56 899999999999999999998888877762 211 14456666666666
Q ss_pred cCCHHHHHHHHHhCCCCCCCHHHHH
Q 005487 559 AGRLQEAYGILQSTPEIREDAGLLS 583 (694)
Q Consensus 559 ~g~~~~A~~~~~~~~~~~p~~~~~~ 583 (694)
.|..++|.+-++.+.++.|+..-+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHH
Confidence 7888888888888888888854433
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.29 E-value=3 Score=34.49 Aligned_cols=97 Identities=12% Similarity=0.015 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHH
Q 005487 522 HAGWVDEGGYYFNLMISEYNIQPRNE-HYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLH-RDIEMGE 599 (694)
Q Consensus 522 ~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~ 599 (694)
..++.+++..+++.+. -+.|+.. .-..-+..+...|++++|+.++++..+..+....-..+...|... ||.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp---- 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA---- 94 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh----
Confidence 3677777777777776 4556533 222335666777888888888888775555544444454444332 222
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 600 KIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 600 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.|...+......|.-.+++.+.+.+.
T Consensus 95 ---------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 ---------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ---------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 24444444445555555555555554
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.09 E-value=0.18 Score=29.66 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
.+|..+|.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987654
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.00 E-value=0.35 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 585 LFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 585 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
++.++...|++++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334444445555555555555544443
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.96 E-value=2 Score=40.25 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHH----hcCCCCChHHHHH
Q 005487 476 VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMIS----EYNIQPRNEHYSC 551 (694)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~~ 551 (694)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ +.|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356667777788888888888888888764 45677888888888888888888888877653 4567777665544
Q ss_pred HHHH
Q 005487 552 LIDL 555 (694)
Q Consensus 552 l~~~ 555 (694)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.86 E-value=39 Score=41.51 Aligned_cols=109 Identities=13% Similarity=-0.040 Sum_probs=74.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC-CCCC--------HH
Q 005487 510 SITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE-IRED--------AG 580 (694)
Q Consensus 510 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~--------~~ 580 (694)
..+|....+....+|.++.|...+-++.+. + -+..+.-.+..+...|+...|+.++++..+ ..|+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 367888888889999999998887777622 2 344566778899999999999999998553 1111 11
Q ss_pred -----HHH---HHH-HHHHHcCC--HHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 005487 581 -----LLS---TLF-SACRLHRD--IEMGEKIAKLLIEKDPDDSSTYIVLSNM 622 (694)
Q Consensus 581 -----~~~---~l~-~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 622 (694)
... .+. ......++ ...-...|+.+.+..|.....|+.+|.-
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 111 111 11222344 4466778899999999888888888744
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.80 E-value=8.2 Score=33.64 Aligned_cols=93 Identities=14% Similarity=-0.026 Sum_probs=67.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHh
Q 005487 481 MIAAYGSHGRALEALKLFGEMQQSNARPDS----ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLL 556 (694)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 556 (694)
+...+...+++++|...++..... +.|. ..-..|.+.....|.+|+|...++... +-.........-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---~~~w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIK---EESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccHHHHHHHHhhhHH
Confidence 456678889999999999988864 2222 233445567888999999999998776 2222333445568999
Q ss_pred hhcCCHHHHHHHHHhCCCCCCC
Q 005487 557 GRAGRLQEAYGILQSTPEIRED 578 (694)
Q Consensus 557 ~~~g~~~~A~~~~~~~~~~~p~ 578 (694)
...|+.++|+.-|+++.+..++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 9999999999999988754343
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.74 E-value=7.5 Score=33.04 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHhcCChHHHHHHHhhCCCCChHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHH--HHHHHccCC
Q 005487 454 YAKCGAVDEAFKVFNELPERDLVSWTS-----MIAAYGSHGRALEALKLFGEMQQSNARPDSI-TFLAL--LSACSHAGW 525 (694)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~ 525 (694)
+.+.+..++|+.-|..+.+.+...|-. ........|+...|...|.++-.....|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677777877777777644333332 2344567777778888887776643233221 11122 123566777
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 005487 526 VDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPE 574 (694)
Q Consensus 526 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 574 (694)
+++...-.+.+..+ +.+-....-..|+-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777766666421 1111223345666677777888888887777654
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.72 E-value=0.16 Score=42.90 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=61.0
Q ss_pred HHHHhhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCCCCchhhHHHHHHHHHccCChhH
Q 005487 9 LLRTCTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDNPLDLSLWNGLMASYTKNYMYIT 88 (694)
Q Consensus 9 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (694)
+...+.+.+.++....+++.+++.+...+..+.+.++..|++.+..+...++++....- -...++..+.+.|.++.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~y----d~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNY----DLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-----CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccccc----CHHHHHHHHHhcchHHH
Confidence 45566677888888888888888776777888888888888888888888888754442 22356666777777777
Q ss_pred HHHHHHHhh
Q 005487 89 ALELFDMLL 97 (694)
Q Consensus 89 a~~~~~~~~ 97 (694)
+.-++..+.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777777653
No 307
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.67 E-value=0.19 Score=49.66 Aligned_cols=99 Identities=9% Similarity=-0.027 Sum_probs=57.0
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHhhhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCH
Q 005487 518 SACSHAGWVDEGGYYFNLMISEYNIQPRNEHY-SCLIDLLGRAGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDI 595 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~ 595 (694)
..+...+.++.|+.++.+++ .+.|+-..| ..-..++.+.+++-.|+.=..++++..|.. ..|..=+.++...+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34455566677777777666 445654333 223456666666666666666665555543 2344444555566666
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHH
Q 005487 596 EMGEKIAKLLIEKDPDDSSTYIVL 619 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~~~~~~~l 619 (694)
.+|...+++...+.|+++.+-..+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHH
Confidence 677777777766666665544433
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=5 Score=36.20 Aligned_cols=170 Identities=10% Similarity=0.038 Sum_probs=86.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 005487 449 ALLDMYAKCGAVDEAFKVFNELPE--RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWV 526 (694)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 526 (694)
.-..+|-..++++.|...+.+..+ .+..+|-. ....++.|.-+.+++.+. +--...|......|.+.|..
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfh------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCc
Confidence 334455555666666555544432 11111111 112344455555555542 11223444555567777777
Q ss_pred HHHHHHHHHhHHhc-CCCCCh--HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005487 527 DEGGYYFNLMISEY-NIQPRN--EHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAK 603 (694)
Q Consensus 527 ~~A~~~~~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 603 (694)
+.|-..++++-+-. +..|+. ..|..-.......++...|.+ .+......+.+.+.+++|-..+.
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e-------------l~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE-------------LYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH-------------HHHHhhhHhhhhHHhhHHHHHHH
Confidence 77776666653211 233331 123222333333333333333 34444566677777777777776
Q ss_pred HHHhcC------CCCCccHHHHHHHHhhcCChHHHHHHHHHH
Q 005487 604 LLIEKD------PDDSSTYIVLSNMYASVKKWDEVRKIRLKM 639 (694)
Q Consensus 604 ~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 639 (694)
+-.... |..-..+...+-+|....++..|.+.++.-
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 654322 333334666666777788999998888753
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.50 E-value=12 Score=37.31 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 005487 577 EDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD----DSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRK 646 (694)
Q Consensus 577 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 646 (694)
.....|..++..+++.|.++.|...+.++...++. .+.+...-+..+...|+..+|...++......+.+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 34567899999999999999999999999986632 56677778999999999999999999887744433
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.37 E-value=0.25 Score=26.96 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=19.6
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHH
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRL 637 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~ 637 (694)
.+...++.++...|++++|+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888999999999988775
No 311
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.05 E-value=0.37 Score=41.06 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCC----------HHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcC-
Q 005487 526 VDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGR----------LQEAYGILQSTPEIREDA-GLLSTLFSACRLHR- 593 (694)
Q Consensus 526 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~- 593 (694)
++.|.+..+..... -+.|...+...+.++....+ +++|+.-|+++..+.|+. ..+..++.++..++
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 45555555554322 13345555555555544322 233444444444455653 45555555554322
Q ss_pred ---C-------HHHHHHHHHHHHhcCCCC
Q 005487 594 ---D-------IEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 594 ---~-------~~~A~~~~~~~~~~~p~~ 612 (694)
+ +++|...|+++...+|+|
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1 455555666666666665
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.84 E-value=4.1 Score=35.63 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHH----
Q 005487 477 SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDS--ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYS---- 550 (694)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---- 550 (694)
.+..++..|.+.|+.+.|++.+.++.+....+.. ..+..+++.....+++..+.....++........+...-+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4566677777777777777777777765433332 4455666666677777777777766653211111111111
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC
Q 005487 551 CLIDLLGRAGRLQEAYGILQSTP 573 (694)
Q Consensus 551 ~l~~~~~~~g~~~~A~~~~~~~~ 573 (694)
.-+-.+...+++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11233445677777777776654
No 313
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.72 E-value=0.23 Score=46.63 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHH
Q 005487 558 RAGRLQEAYGILQSTPEIREDA-GLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIR 636 (694)
Q Consensus 558 ~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 636 (694)
..|.+++|++.+..++...|.. .++..-..++.+.+....|+.-+..+++++|+...-|-.-+.+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4578999999999888776654 455666677888899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcc
Q 005487 637 LKMKELGLRK 646 (694)
Q Consensus 637 ~~~~~~~~~~ 646 (694)
....+.+...
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 9988777644
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.68 E-value=0.3 Score=28.31 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=26.3
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 615 TYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 615 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
++..++.++.+.|++++|.+.++++.+..+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999987654
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.66 E-value=3.6 Score=40.78 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=62.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHH
Q 005487 485 YGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQE 564 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 564 (694)
-...|+...|.+-+....... +-++.........+...|+++.+...+....+ -+.....+..++++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 334566655554444443321 11222222222234556666666666665542 222334455566666666666666
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 565 AYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 565 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
|...-+-|...+. ++.+....+......|-++++.-.+++++.++|+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666666554222 3333333344444556666666666666666654
No 316
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=1.2 Score=41.99 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhCCC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 005487 547 EHYSCLIDLLGRAGRLQEAYGILQSTPE---IRED--AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSN 621 (694)
Q Consensus 547 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 621 (694)
..|.-=++-|.+..++..|...|.+..+ ..|+ ...|..-+.+....||+..|+.-..+++..+|.+..+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 3555667888999999999999998665 3343 3456666666677899999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHH
Q 005487 622 MYASVKKWDEVRKIRLKM 639 (694)
Q Consensus 622 ~~~~~g~~~~A~~~~~~~ 639 (694)
++....++++|....+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999988888777654
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.44 E-value=17 Score=34.77 Aligned_cols=98 Identities=8% Similarity=0.003 Sum_probs=46.1
Q ss_pred HHHHHHHHHcccCChHHHH---HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-C--ChHHHHHHHHH
Q 005487 411 TFTSVLPACSQLAALEKGK---EIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-R--DLVSWTSMIAA 484 (694)
Q Consensus 411 ~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~l~~~ 484 (694)
++..++.++...+..+... .+++.+.. ..+..+.++..-+..+.+.++.+++.+.+..|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4445556666655544433 33333322 2222344444445555556777777777766655 1 12233333333
Q ss_pred H---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 005487 485 Y---GSHGRALEALKLFGEMQQSNARPDS 510 (694)
Q Consensus 485 ~---~~~~~~~~A~~~~~~~~~~~~~p~~ 510 (694)
+ .. .....|...+..+....+.|..
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 2 22 2234555555555544344443
No 318
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.34 E-value=1.2 Score=41.53 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 583 STLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 583 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
..++..+...|+++.+.+.+++.+..+|-+...|..+..+|.+.|+...|+..++.+.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444445555555555666666666666555566666666666666666655555543
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.32 E-value=11 Score=32.36 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005487 246 SALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNE 301 (694)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 301 (694)
..+++.+...|++-+|.++.++....+......++.+..+.++..--..+++-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666677777777777665444444445555555555555554444444443
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.03 E-value=30 Score=36.99 Aligned_cols=245 Identities=13% Similarity=0.079 Sum_probs=129.9
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHccc----C-ChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005487 386 TVGDYFKALAIYSDMKE-------VGAKPDAVTFTSVLPACSQL----A-ALEKGKEIHNHIIESKLETNEIVMGALLDM 453 (694)
Q Consensus 386 ~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (694)
...+.+.|+..|+...+ .| .......+..+|.+. . +.+.|..++......|. |+.... +..+
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHH
Confidence 34455566666655544 33 222333444444432 2 55667777777666663 333332 2233
Q ss_pred HHh---cCChHHHHHHHhhCCC-CChHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 005487 454 YAK---CGAVDEAFKVFNELPE-RDLVSWTSMIAAYG----SHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGW 525 (694)
Q Consensus 454 ~~~---~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 525 (694)
+.. ..+...|.++|..... -++.++-.+...|. ...+...|..++.+..+.| .|-.......+..+.. +.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 322 2356677777776665 33333333333332 2346778888888888876 3332222233333333 66
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHH---hhh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCC
Q 005487 526 VDEGGYYFNLMISEYNIQPRNEHYSCLIDL---LGR----AGRLQEAYGILQSTPEIREDAGLLSTLFSACRL----HRD 594 (694)
Q Consensus 526 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 594 (694)
++.+...+..+. ..+..-....-..+... ... ..+.+.+...+.+.. .+-+......+...+.. ..+
T Consensus 413 ~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 413 YDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA-AQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred ccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH-hccCHHHHhhhcceeeecCCCCCC
Confidence 666655555544 22322111111111111 111 225566777777665 44455555566655433 347
Q ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHhhc-C--ChHHHHHHHHHHHhCC
Q 005487 595 IEMGEKIAKLLIEKDPDDSSTYIVLSNMYASV-K--KWDEVRKIRLKMKELG 643 (694)
Q Consensus 595 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 643 (694)
.+.|...+.++.... +....+++.++... | .+..|.+++++....+
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 888888888888776 77888888887764 1 2678888888776544
No 321
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.02 E-value=1 Score=45.72 Aligned_cols=103 Identities=14% Similarity=0.022 Sum_probs=74.3
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHhhhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCH
Q 005487 519 ACSHAGWVDEGGYYFNLMISEYNIQPRN--EHYSCLIDLLGRAGRLQEAYGILQSTPEI-REDAGLLSTLFSACRLHRDI 595 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~ 595 (694)
.....|+...|...+..+. ...|.. .....|++.+.+.|...+|-.++.+...+ ...+.++..++.++....+.
T Consensus 616 ywr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred eeeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 3445688888888887776 444542 24556778888888888888888776553 33456667778888888888
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHh
Q 005487 596 EMGEKIAKLLIEKDPDDSSTYIVLSNMYA 624 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 624 (694)
++|++.++.+++++|+++..-..|..+-+
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888888888887776665543
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.85 E-value=0.54 Score=27.51 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999987653
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.78 E-value=1 Score=29.83 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHH
Q 005487 582 LSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYI 617 (694)
Q Consensus 582 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 617 (694)
+..++.++.+.|++++|....+.+++.+|+|..+-.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345667788899999999999999999998765543
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.53 E-value=7.6 Score=34.17 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=56.3
Q ss_pred HhhhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCccHHHHHHHHhhcCCh
Q 005487 555 LLGRAGRLQEAYGILQSTPE-IREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD----DSSTYIVLSNMYASVKKW 629 (694)
Q Consensus 555 ~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 629 (694)
.+.+.|+ ++|.+.|-.+.. -.-+...+...+..+....|.++++.++-+++++.+. |+..+..|+.++.+.|++
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 4455566 566666666553 2223344445555566688999999999999988643 688899999999999999
Q ss_pred HHHH
Q 005487 630 DEVR 633 (694)
Q Consensus 630 ~~A~ 633 (694)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 325
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.33 E-value=4.6 Score=32.65 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHhhhcCCH---HHHHHHHHhCCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 005487 543 QPRNEHYSCLIDLLGRAGRL---QEAYGILQSTPE-IRED--AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 543 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
.++..+-..++.++.+..+. .+-+.++++..+ ..|+ -..+..+.-++.+.|++++++.+...+++..|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 56666666677777766544 445667777664 3332 245556666777788888888888888877777643
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.24 E-value=13 Score=31.83 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHh
Q 005487 228 EIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFE 266 (694)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 266 (694)
+.++.+.+.+++|+...+..+++.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344455556666666666666666666666555444443
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.97 E-value=1.1 Score=38.20 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCCCC-hHHHHHHHHHhhhcCC-----------HHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005487 541 NIQPR-NEHYSCLIDLLGRAGR-----------LQEAYGILQSTPEIREDAGLLSTLFSAC 589 (694)
Q Consensus 541 ~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 589 (694)
.+.|+ ..++.+++.+|...+. +++|...|+++...+|+...|+.-+...
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45666 3466677776665432 3455555555555677776666554443
No 328
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.86 E-value=1.1 Score=33.89 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 599 EKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 599 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
...+++.++.+|+|......++..+...|++++|++.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445666667777777777777777777777777777766665544
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.77 E-value=39 Score=36.63 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=13.2
Q ss_pred HhhcCChHHHHHHHHHH
Q 005487 623 YASVKKWDEVRKIRLKM 639 (694)
Q Consensus 623 ~~~~g~~~~A~~~~~~~ 639 (694)
+...|+|++|++.++++
T Consensus 515 ~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 67789999998888865
No 330
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.72 E-value=30 Score=35.20 Aligned_cols=193 Identities=10% Similarity=0.109 Sum_probs=132.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 005487 441 ETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLS 518 (694)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 518 (694)
+.+.....+++..++.+-.+.-...+..++.. .+-..+..++.+|... ..+.-..+|+++.+.. -|...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 44555666788888888888877778777776 6667899999999988 6688899999999863 44444444444
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHhhhcCCHHHHHHHHHhCCC---CCCCHHHHHHHHHHH
Q 005487 519 ACSHAGWVDEGGYYFNLMISEYNIQPR------NEHYSCLIDLLGRAGRLQEAYGILQSTPE---IREDAGLLSTLFSAC 589 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~ 589 (694)
.+...++...+..+|.++.- .+-|. .+.|..+...- ..+.|.-+.+..++.. ...-...+..+..-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44555899999999998873 23332 23454444322 3456666666666543 112234445555667
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhh--------------------cCChHHHHHHHHHHH
Q 005487 590 RLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS--------------------VKKWDEVRKIRLKMK 640 (694)
Q Consensus 590 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 640 (694)
....|+++|++.+...++.+..|..+...++.-+.. ..++-+++--|++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 778899999999999999988888877777766555 445666666666653
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.36 E-value=1 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 583 STLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 583 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
..++..+...|+++.|...++++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3444444445555555555555554444
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.23 E-value=10 Score=33.16 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHcccCChHHHHHHHHHHHH
Q 005487 376 YWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDA--VTFTSVLPACSQLAALEKGKEIHNHIIE 437 (694)
Q Consensus 376 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 437 (694)
.+..+...|.+.|+.+.|++.|.++.+....+.. ..+..++..+.-.+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556667777777777777777776665433322 3345556666666777776666665543
No 333
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.07 E-value=32 Score=34.88 Aligned_cols=241 Identities=12% Similarity=0.104 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC------ChHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHhcCChH-H
Q 005487 392 KALAIYSDMKEVGAKPDAVTFTSVLPACSQLA------ALEKGKEIHNHIIES-KLE-TNEIVMGALLDMYAKCGAVD-E 462 (694)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~-~ 462 (694)
....+|++.... -|+...+...|..|...- .......+++..... +.. .....|..+.-++....... -
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344566655543 455555655665554322 233344445544332 222 23445555555555554433 3
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhc-CCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHccCC-HHHH-H-HHHHHhH
Q 005487 463 AFKVFNELPERDLVSWTSMIAAYGSH-GRALEAL-KLFGEMQQSNARPDSITFLALLSACSHAGW-VDEG-G-YYFNLMI 537 (694)
Q Consensus 463 A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A-~-~~~~~~~ 537 (694)
|..+..+....+...|..-+....+. .+++--. +++......-..+-...++... .|+ .+.. . .++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 34444455556666666655555432 2222111 1222222211111122232222 222 2211 1 1222222
Q ss_pred HhcCCCCChHHH-HHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCC
Q 005487 538 SEYNIQPRNEHY-SCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSAC--RLHRDIEMGEKIAKLLIEKDPDDS 613 (694)
Q Consensus 538 ~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~ 613 (694)
. -..|+..++ ..+.+.+.+.|-.++|...+.+....+| +...+..++..- ...-+..-+..+++.++.-...++
T Consensus 453 -s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 -S-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred -H-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 224554443 5677888888999999999998877665 445666555432 223348888999999988777888
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
..|......-...|..+.+-.++.++.+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 9999888888888998888887776543
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.85 E-value=0.87 Score=28.15 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.8
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 615 TYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 615 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
++.+|+.+|...|++++|++++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 567889999999999999999888754
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=4.5 Score=41.47 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=63.3
Q ss_pred hhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 005487 151 YAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIH 230 (694)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 230 (694)
..+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 345666666666654433 455677777777777787777777776554 345566666667666666666
Q ss_pred HHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcC
Q 005487 231 KEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQT 268 (694)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 268 (694)
....+.| ..|. -.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 6666665 2222 223455678888888877654
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.24 E-value=51 Score=36.22 Aligned_cols=217 Identities=17% Similarity=0.065 Sum_probs=117.2
Q ss_pred HcccCChHHHHHHHHHHHHhCCCCChh-------HHHHH-HHHHHhcCChHHHHHHHhhCCC--------CChHHHHHHH
Q 005487 419 CSQLAALEKGKEIHNHIIESKLETNEI-------VMGAL-LDMYAKCGAVDEAFKVFNELPE--------RDLVSWTSMI 482 (694)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~ 482 (694)
......+.+|..+..++...-..|+.. .++.+ .......|+++.|.++-+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677788888777775432222111 22222 1223456888888887765543 3455677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhh---HHHH--HHHHHccCC--HHHHHHHHHHhHHhcCCC-CC----hHHHH
Q 005487 483 AAYGSHGRALEALKLFGEMQQSNARPDSIT---FLAL--LSACSHAGW--VDEGGYYFNLMISEYNIQ-PR----NEHYS 550 (694)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l--~~~~~~~g~--~~~A~~~~~~~~~~~~~~-p~----~~~~~ 550 (694)
.+..-.|++++|..+.++..+..-.-+... +..+ ...+..+|. +.+....|.......... |. ..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888888999999988877665421223322 2222 224666773 344444454443322211 21 22333
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC----CCCCCH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-Ccc-HHH--
Q 005487 551 CLIDLLGRAGRLQEAYGILQSTP----EIREDA--G--LLSTLFSACRLHRDIEMGEKIAKLLIEKDPDD-SST-YIV-- 618 (694)
Q Consensus 551 ~l~~~~~~~g~~~~A~~~~~~~~----~~~p~~--~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~-~~~-- 618 (694)
.+..++.+ ++.+..-..... ...|.+ . .+..++......|+.++|...+..+..+--+. +.+ |..
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 333333333222 233332 1 12356677788999999999998887654322 222 211
Q ss_pred -H--HHHHhhcCChHHHHHHHHH
Q 005487 619 -L--SNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 619 -l--~~~~~~~g~~~~A~~~~~~ 638 (694)
. ...-..+|+.++|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 1 2224456888888777765
No 337
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.21 E-value=8.8 Score=36.83 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhCCCCCChh-hH-HHHHHHHhccCC--hhHHHHHHHHHHHhCCCCchhHHHHHH
Q 005487 189 EKALELFKKMRGSGFQPNSV-TL-TTVISSCARLMD--LDRGKEIHKEFIKDGFVSDSYISSALV 249 (694)
Q Consensus 189 ~~a~~~~~~m~~~~~~~~~~-~~-~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 249 (694)
+.+..+|+.+.+.|+..+.. -+ ..++..+....+ ...+.++++.+.+.|+++....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 45566667777666655433 22 222222222222 235666777777777766665555443
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.60 E-value=49 Score=35.39 Aligned_cols=245 Identities=13% Similarity=0.102 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHH-HHHHHH-HcccCChHHHHHHHHHHHH-------hCCCCChhHHHHHHHHHHhcC--
Q 005487 390 YFKALAIYSDMKEVGAKPDAVTF-TSVLPA-CSQLAALEKGKEIHNHIIE-------SKLETNEIVMGALLDMYAKCG-- 458 (694)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-- 458 (694)
...|..+++...+.|..-..... .....+ .....|.+.|..+++.+.+ .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677788777776522111111 112222 4567899999999998876 44 3334556777777643
Q ss_pred ---ChHHHHHHHhhCCC-CChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--HccCCHHHH
Q 005487 459 ---AVDEAFKVFNELPE-RDLVSWTSMIAAYGSH---GRALEALKLFGEMQQSNARPDSITFLALLSAC--SHAGWVDEG 529 (694)
Q Consensus 459 ---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A 529 (694)
+.+.|..++..... .++.....+...+... .+...|.++|....+.|. +.......++... .-..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHH
Confidence 66779998887766 4444444444444433 467899999999999883 3322222222111 123478899
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHH---H-HHHH----cCCHHHHHH
Q 005487 530 GYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLF---S-ACRL----HRDIEMGEK 600 (694)
Q Consensus 530 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~---~-~~~~----~~~~~~A~~ 600 (694)
..++++.... + .|...--......+.. ++++.+.-.+..+.+..-. ...-...+ . .... ..+...+..
T Consensus 384 ~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 9999998743 4 3332221222333333 6666666555544331111 11111111 0 0001 124556666
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHhhc----CChHHHHHHHHHHHhCC
Q 005487 601 IAKLLIEKDPDDSSTYIVLSNMYASV----KKWDEVRKIRLKMKELG 643 (694)
Q Consensus 601 ~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 643 (694)
.+.++... .++.+...|++.|... .+.+.|...+.....++
T Consensus 461 ~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 461 LYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 66665543 3566777888887765 35788888887776666
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.59 E-value=1.4 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 617 IVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 617 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 568899999999999999999887654
No 340
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.24 E-value=7 Score=36.67 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 005487 439 KLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-RDLV-----SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSIT 512 (694)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 512 (694)
|.+.+..+...++..-....+++.+...+-++.. |+.. +-...++.+. .=++++++.++..=++-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 4444444455555555556677777776666554 2211 1112222222 2366778888777778888888888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHH
Q 005487 513 FLALLSACSHAGWVDEGGYYFNLMIS 538 (694)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 538 (694)
++.++..+.+.+++.+|.++.-.|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888888777666653
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.01 E-value=69 Score=36.52 Aligned_cols=116 Identities=16% Similarity=0.053 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 005487 447 MGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWV 526 (694)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 526 (694)
|.-..+.-.+.|.+.+|+.++..-.+.-...|.+.+.-+.....+++|.-.|+..=+. ...+.+|...|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccH
Confidence 3344444456666666666554333333345555556666667777777776654331 2346677778888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 005487 527 DEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTP 573 (694)
Q Consensus 527 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 573 (694)
.+|..+..++.. +-.--..+-..|+..+..++++-+|-+++.+..
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 888887776641 111112233567777778888888888777765
No 342
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.74 E-value=4.9 Score=36.18 Aligned_cols=59 Identities=14% Similarity=0.069 Sum_probs=46.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 585 LFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 585 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
+...+...|++-++++.....+...|.|..+|+..+.+....=+.++|..-|.++....
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33444557888888888888888888888888888888888888888888777776543
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.66 E-value=1e+02 Score=38.22 Aligned_cols=63 Identities=5% Similarity=-0.098 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 579 AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 579 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
...|...+..++..|.++.|...+-++.+.. -+.++...+..+...|+-..|+.++++-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4578888888888888888888888887776 45678888888888888888888888766444
No 344
>PRK09687 putative lyase; Provisional
Probab=85.56 E-value=34 Score=32.63 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 005487 442 TNEIVMGALLDMYAKCGAVDEAFKVFNELPE-RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSAC 520 (694)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 520 (694)
++..+-...+.++++.|+.+ |...+-.... ++ .....+.++...|+. +|+..+.++... .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 34455555666666666643 3333333332 33 223455666666664 566666666654 34554444444443
No 345
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.23 E-value=15 Score=36.51 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HccCCHHHHHHHHHHhH
Q 005487 482 IAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSAC-SHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 537 (694)
+..+.+.|-+..|+++.+-+...+..-|+.....+|..| .+.++++--+.+.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 445666677777777777666654222444444444433 45566666666666554
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.10 E-value=14 Score=38.10 Aligned_cols=149 Identities=17% Similarity=0.084 Sum_probs=85.7
Q ss_pred hcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 005487 456 KCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNL 535 (694)
Q Consensus 456 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (694)
-.|+++.|..++-.++++ ..+.++..+.++|-.++|+++ .+|+.-. .....+.|+++.|..+..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 456777776665555532 233445555566666665543 2332211 1223456777777766654
Q ss_pred hHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 536 MISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 536 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
.. +..-|..|+++....|++..|.+.+.++. -|..|+..+-..|+.+.-..+...+.+...+|
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR-------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc-------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 43 34457788888888888888888887765 23445555555666665444444444443333
Q ss_pred HHHHHHHHhhcCChHHHHHHHHH
Q 005487 616 YIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 616 ~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
....+|...|++++.++++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 233456677888887777653
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.00 E-value=4.1 Score=36.00 Aligned_cols=64 Identities=25% Similarity=0.233 Sum_probs=48.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 005487 550 SCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDS 613 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 613 (694)
..-+..+.+.+.+.+|+...+.-.+.+| +...-..++..++..|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3345667788888888888877666566 455666777888888999999888888888888643
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.33 E-value=65 Score=34.81 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q 005487 513 FLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLH 592 (694)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 592 (694)
....+..|.+.|-+++.+-++-+|- .+..+|.-.--+.++.++|+++.+. +.|...|..|+..+...
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKe----q~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKE----QDDSELWEDLINYSLDK 703 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHh----cCCHHHHHHHHHHhhcC
Confidence 3445555666666666666666553 1233333344455677777776664 55788888888766554
Q ss_pred CCHHHHH
Q 005487 593 RDIEMGE 599 (694)
Q Consensus 593 ~~~~~A~ 599 (694)
=.+-.++
T Consensus 704 Pe~~~~l 710 (846)
T KOG2066|consen 704 PEFIKAL 710 (846)
T ss_pred cHHHHHH
Confidence 4444443
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.33 E-value=71 Score=35.21 Aligned_cols=183 Identities=14% Similarity=0.023 Sum_probs=84.4
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHH---HH--HHHHH
Q 005487 385 VTVGDYFKALAIYSDMKEV----GAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMG---AL--LDMYA 455 (694)
Q Consensus 385 ~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--~~~~~ 455 (694)
...|++++|.++.+..... -..+....+..+..+..-.|++++|..+.....+..-..+...+. .+ ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3456677777766665442 122334445555556666777777777766654432222222222 11 22344
Q ss_pred hcCChHHH--HHHHhhCCC-----C-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCH--hhH--HHHH
Q 005487 456 KCGAVDEA--FKVFNELPE-----R-----DLVSWTSMIAAYGSHGRALEALKLFGEMQQSN--ARPDS--ITF--LALL 517 (694)
Q Consensus 456 ~~g~~~~A--~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~--~~~--~~l~ 517 (694)
.+|+...+ ...|..... . -...+..+..++.+ .+.+..-.....+-| ..|.. ... ..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 45532222 222222111 1 11233334444443 233222222222111 12222 222 2556
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCChHH------HHHHHHHhhhcCCHHHHHHHHHh
Q 005487 518 SACSHAGWVDEGGYYFNLMISEYNIQPRNEH------YSCLIDLLGRAGRLQEAYGILQS 571 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~------~~~l~~~~~~~g~~~~A~~~~~~ 571 (694)
......|++++|...++++..- ...+.... +..-......+|+.+.|...+.+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 6677788888888888877632 22232111 11222344567788777777766
No 350
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.30 E-value=19 Score=39.97 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005487 376 YWNVMISGYVTVGDYFKALAIYSDMKEV 403 (694)
Q Consensus 376 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 403 (694)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4777888888888888888888887763
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.81 E-value=32 Score=30.77 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHH
Q 005487 478 WTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR----NEHYSCLI 553 (694)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~ 553 (694)
.+.-+..+.+.+...+++...++-++.+ +.|..+-..++..++-.|+|++|..-++... .+.|+ ..+|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3445566778888999999988888773 4466777788888999999999988888765 34444 34555544
Q ss_pred HHhhhcCCHHHHH-HHHHh--CCC--CCCCHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHhcCCCCCc
Q 005487 554 DLLGRAGRLQEAY-GILQS--TPE--IREDAGLLSTLFSACRL-H-RDIEMGEKIAKLLIEKDPDDSS 614 (694)
Q Consensus 554 ~~~~~~g~~~~A~-~~~~~--~~~--~~p~~~~~~~l~~~~~~-~-~~~~~A~~~~~~~~~~~p~~~~ 614 (694)
++- .+. ++|.. .+. ..|.+.....+..+..- + |.-+.+..+-+.+++..|..+.
T Consensus 80 r~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 80 RCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 432 222 22322 121 22444444444444333 3 3455566666788887776433
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.79 E-value=2.1 Score=23.27 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=12.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHH
Q 005487 550 SCLIDLLGRAGRLQEAYGILQ 570 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~ 570 (694)
..++.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666554
No 353
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.61 E-value=8.7 Score=36.09 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=71.8
Q ss_pred CCCCCchhhhHHHHHHhcCCChhHHHHHHhhCCCCCch-h----hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcc
Q 005487 33 GLQNNIALCKSLINLYFSCQNYDYAMLVFKTIDNPLDL-S----LWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSY 107 (694)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 107 (694)
|.+.+..+-..++..-....++++++..+-++...... . +-.+.++. +-.-++++++.++..=.+. |+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqY-GiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQY-GIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchh-ccccchh
Confidence 55666666777776666677888888888776542111 0 11122222 2334677888888888887 8889999
Q ss_pred cHHHHHHHhhCCCCchhHHHHHHHHHHHc
Q 005487 108 TYPSVLKACGGLGSVGIGKMIHTHLIKTG 136 (694)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 136 (694)
+++.+++.+.+.+++..|.++...|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888888887765
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.60 E-value=72 Score=34.73 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHhcC---CCCC-ccHH-----HHHHHHhhcCChHHHHHHHHHH
Q 005487 592 HRDIEMGEKIAKLLIEKD---PDDS-STYI-----VLSNMYASVKKWDEVRKIRLKM 639 (694)
Q Consensus 592 ~~~~~~A~~~~~~~~~~~---p~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~ 639 (694)
.|+..+.......+.... |+.. ..|. .+...+...|+.++|.....+.
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 566666555555444332 2212 2332 2344466678888887776654
No 355
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.56 E-value=1.3 Score=37.23 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=60.6
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHH
Q 005487 112 VLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKA 191 (694)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 191 (694)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....++..+.+.|.++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5677777888888888888888777667788889999999998888888888884433 3334566666667777776
Q ss_pred HHHHHHH
Q 005487 192 LELFKKM 198 (694)
Q Consensus 192 ~~~~~~m 198 (694)
.-++..+
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
No 356
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.56 E-value=5.4 Score=36.13 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCHH-------HHHHHHHHHHhcC--CC----CCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 580 GLLSTLFSACRLHRDIE-------MGEKIAKLLIEKD--PD----DSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
..+..+++.|+..|+.+ .|...|+++.+.. |. .......+|.+..+.|++++|.+.+.++...+-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45566677777777744 4555555555443 22 234677789999999999999999999876554
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.91 E-value=33 Score=30.39 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCC-------CCCcccHHHHHHHHHhCCChhHH
Q 005487 125 GKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMS-------ERDVASWNTVISCYYQDGQAEKA 191 (694)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a 191 (694)
|...|-.+...+.-.++.....|...|. ..+.++++.++-+.. ..|+..+.+|+..+.+.|+++.|
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3333434443333334444444444443 344444444443332 13444555555555555555544
No 358
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.58 E-value=2.2 Score=24.38 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 005487 593 RDIEMGEKIAKLLIEKDPDDSSTYIVLSNM 622 (694)
Q Consensus 593 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 622 (694)
|+.+.|..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999889888888877654
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.47 E-value=6.2 Score=40.39 Aligned_cols=135 Identities=16% Similarity=0.033 Sum_probs=93.4
Q ss_pred CCHhhHHHHHHHHHcc--CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCH--HHHH
Q 005487 508 PDSITFLALLSACSHA--GWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDA--GLLS 583 (694)
Q Consensus 508 p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~ 583 (694)
|+..+...++.-.... ..-+-+-.++-.|. ..+.|--.+++..+-.+--.|+...|.+.+..+.-..|.. ..+.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 4555555444332221 12233444444443 2344443333333333445799999999999987767753 3456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 584 TLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 584 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
.++....+.|-.-.|-.++.+.+.++-..|-++..+|++|....+.+.|++.++.+.+...
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 7778888888888999999999999988888999999999999999999999998776553
No 360
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.38 E-value=61 Score=36.18 Aligned_cols=112 Identities=15% Similarity=0.088 Sum_probs=58.5
Q ss_pred hhhHHHHHHhcCCChhHHHHHHhhCCCCC------chhhHHHHHHHHHccCCh--hHHHHHHHHhhhCCCCCCCcccHHH
Q 005487 40 LCKSLINLYFSCQNYDYAMLVFKTIDNPL------DLSLWNGLMASYTKNYMY--ITALELFDMLLQNPYLKPDSYTYPS 111 (694)
Q Consensus 40 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~ 111 (694)
-|..|+..|...|.+++|++++......+ ....+..++.-+.+.+.. +-.+++-++..+. ...-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeec
Confidence 46677777777777777777776653311 111234444444444444 6666666666654 11111111111
Q ss_pred ------------HHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhh
Q 005487 112 ------------VLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYA 152 (694)
Q Consensus 112 ------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (694)
.+-.+......+.+..+++.++...-.++....+.++..|.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11122344455556666666666655556666666666554
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.05 E-value=5 Score=26.56 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.0
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 615 TYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 615 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
..+.++-.+.+.|++++|.+..+.+.+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 356678889999999999999999887543
No 362
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.94 E-value=12 Score=37.24 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=85.4
Q ss_pred HHhcCChHHHHHH-HhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 005487 454 YAKCGAVDEAFKV-FNELPE--RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGG 530 (694)
Q Consensus 454 ~~~~g~~~~A~~~-~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 530 (694)
-...|++..|-+- +..+.. .++.........+...|+++.+...+...... +.....+...+++.....|++++|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456777666543 333333 23333333445567889999999988777654 3455678888899999999999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHH
Q 005487 531 YYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSA 588 (694)
Q Consensus 531 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 588 (694)
..-.-|... .+ -+++.....+...-..|-++++...+++...+.| ...-|..++..
T Consensus 378 s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 378 STAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 999988832 22 2333433333444456788999999999776544 33445544443
No 363
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.77 E-value=3.6 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005487 580 GLLSTLFSACRLHRDIEMGEKIAKLLIEK 608 (694)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 608 (694)
.+++.++..+...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35667777777777777777777777653
No 364
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.77 E-value=16 Score=28.04 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 005487 493 EALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYN 541 (694)
Q Consensus 493 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 541 (694)
+..+-++.+....+.|++......+.+|.+.+++.-|+++++.+..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 3445555566666677777777777888888888888888877765544
No 365
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.67 E-value=6.2 Score=31.96 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=46.9
Q ss_pred CCCHhhHHHHHHHHHccC---CHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH
Q 005487 507 RPDSITFLALLSACSHAG---WVDEGGYYFNLMISEYNIQPR--NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG 580 (694)
Q Consensus 507 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 580 (694)
.++..+-..+..++.++. +..+.+.+++.+.+ .-.|+ .+....|+-.+.+.|++++++++++...+.+|+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 455566666666666654 45566777777774 12333 33455677778888888888888888776666554
No 366
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.50 E-value=44 Score=30.81 Aligned_cols=188 Identities=11% Similarity=0.122 Sum_probs=120.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHcccCChHHHHHHHHHHHH---hC--CCCChhHHHHHHHHHHhc
Q 005487 386 TVGDYFKALAIYSDMKEVGAKPD---AVTFTSVLPACSQLAALEKGKEIHNHIIE---SK--LETNEIVMGALLDMYAKC 457 (694)
Q Consensus 386 ~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~ 457 (694)
+..++++|+.-|.+..+....-. -.....++....+.+++++..+.+.++.. .. -..+....++++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44578999999999887532222 23455677888999999999999988753 11 234566677777777666
Q ss_pred CChHHHHHHHhhCCC-----CChH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCH-------hhHHHHH
Q 005487 458 GAVDEAFKVFNELPE-----RDLV----SWTSMIAAYGSHGRALEALKLFGEMQQSNA----RPDS-------ITFLALL 517 (694)
Q Consensus 458 g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~p~~-------~~~~~l~ 517 (694)
.+.+--..+++.-.. .+.. +-+.|...|...+.+.+-.++++++...-- ..|. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666665555554332 2322 335577888888888888888888876411 1121 3455556
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHhhhcCCHHHHH-HHHHhCC
Q 005487 518 SACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCL----IDLLGRAGRLQEAY-GILQSTP 573 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~-~~~~~~~ 573 (694)
..|..+.+-.....++++...-...-|.+.....+ +....+.|++++|- .+|+...
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 67777788888888888776433444555443322 34456778887765 3444433
No 367
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.14 E-value=1.1e+02 Score=35.08 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=29.7
Q ss_pred CChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005487 256 GCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSC 318 (694)
Q Consensus 256 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 318 (694)
++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++ .|+...+..+..+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~y 945 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAY 945 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHH
Confidence 45666666555544 334444455555677777777764 56666655555443
No 368
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.09 E-value=43 Score=30.37 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=16.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005487 482 IAAYGSHGRALEALKLFGEMQQSNAR 507 (694)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~~~ 507 (694)
...-...+++.+|+.+|++.....+.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445567777788888777765443
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.64 E-value=2.8 Score=23.38 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=25.3
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
.+|..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999987653
No 370
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=14 Score=34.31 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 583 STLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 583 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
..+-..+...++++.|....++.+.++|+++.-+...|-+|.+.|.+.-|+.-++...+.-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 4455668889999999999999999999999999999999999999999999988865544
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.38 E-value=48 Score=30.57 Aligned_cols=203 Identities=16% Similarity=0.226 Sum_probs=111.3
Q ss_pred CCHHHHHHHHhcCCC----C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHcccCC
Q 005487 357 GRVSSAENVFEKMSK----T---DVVYWNVMISGYVTVGDYFKALAIYSDMKE---VGA--KPDAVTFTSVLPACSQLAA 424 (694)
Q Consensus 357 ~~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g~--~p~~~~~~~ll~~~~~~~~ 424 (694)
.++++|+.-|+++.+ . ...+.-.++....+.+++++.+..|+++.. +.+ .-+..+.+.++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655432 1 122445567777777888777777777643 111 1234456666666666666
Q ss_pred hHHHHHHHHHHHH-----hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CC-------hHHHHHHHHH
Q 005487 425 LEKGKEIHNHIIE-----SKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE--------RD-------LVSWTSMIAA 484 (694)
Q Consensus 425 ~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~l~~~ 484 (694)
.+...++++.-.+ .+-..-..+-+.+...|...+++....+++.++.. .| ...|..-++.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6666666554322 11122233445567777777777777777766543 11 1245566777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHH-----HHccCCHHHHHHHHHHhHHhcCC--CCChH---HHHHHH
Q 005487 485 YGSHGRALEALKLFGEMQQSN-ARPDSITFLALLSA-----CSHAGWVDEGGYYFNLMISEYNI--QPRNE---HYSCLI 553 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~--~p~~~---~~~~l~ 553 (694)
|....+-..-..++++..... --|-+... ..++- +.+.|.+++|..-|-++.+.+.- .|... -|..|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 777777777777787765421 12333333 33332 35668888776544444333322 23222 345566
Q ss_pred HHhhhcC
Q 005487 554 DLLGRAG 560 (694)
Q Consensus 554 ~~~~~~g 560 (694)
+.+.+.|
T Consensus 280 NMLmkS~ 286 (440)
T KOG1464|consen 280 NMLMKSG 286 (440)
T ss_pred HHHHHcC
Confidence 7777666
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.04 E-value=73 Score=32.39 Aligned_cols=110 Identities=6% Similarity=-0.106 Sum_probs=72.3
Q ss_pred HHHccCCHHHHHHHHHHhH--HhcCCCCChH-----HHHHHHHHhhhcCCHHHHHHHHHhCCC---------CCC-----
Q 005487 519 ACSHAGWVDEGGYYFNLMI--SEYNIQPRNE-----HYSCLIDLLGRAGRLQEAYGILQSTPE---------IRE----- 577 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~--~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~p----- 577 (694)
.+...|++.+|.+++...- +..|...++. .++.|+-+..+.|.+.-+..+|.++.+ +.|
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3455678888877775431 1112111111 235566666677777776666665542 122
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCC
Q 005487 578 -----DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKK 628 (694)
Q Consensus 578 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 628 (694)
...+....+..+...|+.-.|.+.|.++......+|..|..|+.+|....+
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 224455666778889999999999999999999999999999999876543
No 373
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.79 E-value=19 Score=27.26 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 005487 493 EALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISE 539 (694)
Q Consensus 493 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 539 (694)
++.+-++.+....+.|++......+++|.+.+++.-|+++++.+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555556666667777777777777777777788888777776544
No 374
>PRK10941 hypothetical protein; Provisional
Probab=79.71 E-value=9.8 Score=35.82 Aligned_cols=68 Identities=9% Similarity=-0.010 Sum_probs=52.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHH
Q 005487 550 SCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYI 617 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 617 (694)
..+-.+|.+.++++.|+++.+.+....|+ +.-+..-+..|.+.|....|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34556778888888888888887776665 456777777888888888888888888888888766543
No 375
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.62 E-value=3.4 Score=38.45 Aligned_cols=58 Identities=14% Similarity=0.267 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 558 RAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 558 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
+.|+.|+|..+|+.+.+..|+ +.++..++.....+++.-+|-++|-+++...|.+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 345555555555554444443 3344444444444455555555555555555554443
No 376
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.53 E-value=3.3 Score=36.89 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=33.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 005487 591 LHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 591 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
..+|.+.|-+++.+++++-|+....|..++....+.|+++.|.+.+++..+...
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 445666666666666666666666666666666666666666666666554443
No 377
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.16 E-value=3.7 Score=36.54 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005487 558 RAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 558 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
+.|+.+.|.+++.++.+..|. ...|..+.....+.|+++.|...+++.++++|+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 344444444555544443333 234444444444455555555555555555544
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.17 E-value=25 Score=26.87 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=52.0
Q ss_pred CchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005487 121 SVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRG 200 (694)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 200 (694)
..++|.-|-+.+...+-. ...+--.-+..+...|++++|..+.+....||...|-+|-.. +.|..++...-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 455666666655544321 111111223346678889999888888888888888766543 66777766666666766
Q ss_pred CCCCCChhhH
Q 005487 201 SGFQPNSVTL 210 (694)
Q Consensus 201 ~~~~~~~~~~ 210 (694)
+| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444343
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.29 E-value=6.1 Score=28.53 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=21.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhcCCHHHHHH
Q 005487 522 HAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYG 567 (694)
Q Consensus 522 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 567 (694)
.+...++|+..|..++++..-.|+ -.++..++.+|+..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555533222222 1244445555555555555444
No 380
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.45 E-value=24 Score=31.93 Aligned_cols=81 Identities=10% Similarity=-0.091 Sum_probs=42.7
Q ss_pred HHhcCChHHHHHHHhhCCC--CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHccCCHHHH
Q 005487 454 YAKCGAVDEAFKVFNELPE--RDL-VSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSI-TFLALLSACSHAGWVDEG 529 (694)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 529 (694)
|.....++.|+..|.+... |.+ .-|+.-+..+.+..+++.+..--.+..+ +.||.. ....+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3444556666665555444 443 2344455555566666666555555555 345543 233334455555566666
Q ss_pred HHHHHHh
Q 005487 530 GYYFNLM 536 (694)
Q Consensus 530 ~~~~~~~ 536 (694)
+..+.++
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=76.35 E-value=46 Score=31.90 Aligned_cols=122 Identities=10% Similarity=-0.036 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH------ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHH
Q 005487 490 RALEALKLFGEMQQSNARPDSITFLALLSACS------HAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQ 563 (694)
Q Consensus 490 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 563 (694)
-++++..++++....+ .|.+......+.++- ..-+|.....+|+.+. .+.|++.+-..-+.++.+..-.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHH
Confidence 3567788888888876 588877777766542 2347888888888877 45676553222333444455567
Q ss_pred HHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 564 EAYGILQSTPEI---REDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 564 ~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
.++.+++..... ..-...+..-+..+.+.|..++|...|++++.+.++..+-
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 777777776532 1122334445566788899999999999999988765443
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.31 E-value=75 Score=30.55 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC---------------ChHHHHHHHHHHHhCCC
Q 005487 593 RDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK---------------KWDEVRKIRLKMKELGL 644 (694)
Q Consensus 593 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 644 (694)
.|.++|...++++-+.+. ......++ .+...| +...|...+......+.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 367777777777776665 45555555 444444 66667777776665554
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.17 E-value=4.9 Score=28.99 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=30.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCccHHHH---HHHHhhcCChHHHHHH
Q 005487 591 LHRDIEMGEKIAKLLIEKDPDDSSTYIVL---SNMYASVKKWDEVRKI 635 (694)
Q Consensus 591 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l---~~~~~~~g~~~~A~~~ 635 (694)
...+.++|+..++++++..++.+.-+..| +.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778888888887776655555444 4456777777777665
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.10 E-value=10 Score=28.96 Aligned_cols=53 Identities=6% Similarity=0.018 Sum_probs=36.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---------CccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 589 CRLHRDIEMGEKIAKLLIEKDPDD---------SSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 589 ~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
..+.||+..|.+.+.+........ ..+...++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777777777766543221 23445677788888999999988888754
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.47 E-value=34 Score=26.16 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=44.6
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 005487 451 LDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLA 515 (694)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 515 (694)
+..+...|++++|..+.+.+..||...|.+|.. .+.|-.+.+..-+.++...| .|....|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345677889999999888888888888866643 46677777777777777776 555555543
No 386
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.31 E-value=72 Score=29.84 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=77.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHcccCChHHHHHHHHHHH----HhCCCCChhHHH
Q 005487 380 MISGYVTVGDYFKALAIYSDMKEVGAKPDAV-------TFTSVLPACSQLAALEKGKEIHNHII----ESKLETNEIVMG 448 (694)
Q Consensus 380 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 448 (694)
+.+-..+.+++++|+..+.++...|+..+.. +...+...|.+.|+.....+...... ....+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445567788899999999998888776654 34455666677776655444433221 222222334444
Q ss_pred HHHHHHHh-cCChHHHHHHHhhCCC---CCh------HHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHhhHH
Q 005487 449 ALLDMYAK-CGAVDEAFKVFNELPE---RDL------VSWTSMIAAYGSHGRALEALKLFGEMQ----QSNARPDSITFL 514 (694)
Q Consensus 449 ~l~~~~~~-~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~~~~~~ 514 (694)
.+++.+.. ...++.-+.+.....+ ... ..-.-++..+.+.|++.+|+.+...+. +-.-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 44444432 2334444444444333 000 111234555666666666665544332 333344433333
Q ss_pred HHHH-HHHccCCHHHHHHHHHHh
Q 005487 515 ALLS-ACSHAGWVDEGGYYFNLM 536 (694)
Q Consensus 515 ~l~~-~~~~~g~~~~A~~~~~~~ 536 (694)
.+=. +|-...++.++..-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHH
Confidence 2222 444444444444444433
No 387
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.19 E-value=4.1 Score=40.71 Aligned_cols=120 Identities=13% Similarity=0.015 Sum_probs=84.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHhhhc
Q 005487 482 IAAYGSHGRALEALKLFGEMQQSNARPDS-ITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRA 559 (694)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 559 (694)
+..+...++++.|..++.++++. .||- ..|..-..++.+.+++..|+.=+..+. ...|+ ...|..-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchhhheeeeccHHHHhH
Confidence 44566778899999999999985 6764 445444578899999999988887777 33565 44666667788888
Q ss_pred CCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 560 GRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 560 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
+++.+|+..|+......|+..-....+.-|.... .+.-+++++-..+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v----s~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV----SEEKFEKAILTPE 132 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH----HHHhhhhcccCCc
Confidence 8999999999988888888776666665554322 2334555554333
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.56 E-value=60 Score=32.66 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHH--HccCCHHHHHHHHHHhH
Q 005487 484 AYGSHGRALEALKLFGEMQQSNARPDSI--TFLALLSAC--SHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~ 537 (694)
.+...+++..|.++++.+... ++++.. .+..+..+| ...-++.+|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344556667777777666665 444433 333333433 23445666666666655
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.58 E-value=82 Score=29.69 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=74.2
Q ss_pred hcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHhhHHHHHHHHHccCCHH-HHH
Q 005487 456 KCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLF----GEMQQSNARPDSITFLALLSACSHAGWVD-EGG 530 (694)
Q Consensus 456 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~ 530 (694)
+++++++|++++.. =...+.+.|+...|.++. +-..+.+.+++......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665433 223344555544444333 23333455555555555555444332111 122
Q ss_pred HHHHHhHH--hcCCC--CChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005487 531 YYFNLMIS--EYNIQ--PRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLI 606 (694)
Q Consensus 531 ~~~~~~~~--~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 606 (694)
.+.+.+.+ +.+-. -++.....++..|.+.|++.+|...|-... .|+......++......|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~--~~~~~~~~~ll~~~~~~~~------------ 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT--DPSAFAYVMLLEEWSTKGY------------ 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHTS------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC--ChhHHHHHHHHHHHHHhcC------------
Confidence 23333321 11222 346677788899999999988887776442 2222222122222222332
Q ss_pred hcCCCCCccHHHHH-HHHhhcCChHHHHHHHHHHHhC
Q 005487 607 EKDPDDSSTYIVLS-NMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 607 ~~~p~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
|.+...+...+ --|...|+...|...++...++
T Consensus 137 ---~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 ---PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33333333322 3478889999999988887765
No 390
>PRK12798 chemotaxis protein; Reviewed
Probab=73.13 E-value=1.1e+02 Score=30.78 Aligned_cols=177 Identities=14% Similarity=0.168 Sum_probs=111.8
Q ss_pred cCChHHHHHHHhhCCC----CChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHccCCHH
Q 005487 457 CGAVDEAFKVFNELPE----RDLVSWTSMIAA-YGSHGRALEALKLFGEMQQSNARPDSI----TFLALLSACSHAGWVD 527 (694)
Q Consensus 457 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~ 527 (694)
.|+.++|.+.+..+.. +....+-.|+.+ .....++..|+.+|+...-. -|... ....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888887765 334456666654 44556889999999888764 45432 3333344567788888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHH-HHHHhhhcC---CHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 005487 528 EGGYYFNLMISEYNIQPRNEHYSC-LIDLLGRAG---RLQEAYGILQSTPEIRED--AGLLSTLFSACRLHRDIEMGEKI 601 (694)
Q Consensus 528 ~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~ 601 (694)
++..+-.+....+...|-...|.. +...+.+.+ +.+.-..++..| +|+ ..+|..+...-...|+.+.|.-.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~---d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFM---DPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhc---CchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888777777666666665444432 233333333 333333444443 343 45777888888889999999999
Q ss_pred HHHHHhcCCCCCccHHHHHHHH-----hhcCChHHHHHHHHHH
Q 005487 602 AKLLIEKDPDDSSTYIVLSNMY-----ASVKKWDEVRKIRLKM 639 (694)
Q Consensus 602 ~~~~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 639 (694)
.++++.+.+. ...-...+.+| .-..+.++|++.+..+
T Consensus 280 s~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 280 SERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9999988743 33333333333 3346677777777644
No 391
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.06 E-value=51 Score=31.39 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHh
Q 005487 480 SMIAAYGSHGRALEALKLFGEMQQSNARPDS---ITFLALLSACSHAGWVDEGGYYFNLM 536 (694)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 536 (694)
.|..+..+.|+..+|.+.++.+.+. .|-. .....++.+|....-+.+...++-+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555667777777777766654 2211 23344555555555555544444433
No 392
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.64 E-value=18 Score=31.17 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=23.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 005487 586 FSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNM 622 (694)
Q Consensus 586 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 622 (694)
...|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 4567777777777777777776 66655554444433
No 393
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.17 E-value=31 Score=26.52 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005487 392 KALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLD 452 (694)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (694)
+..+-+..+....+.|++....+.+.+|.+.+|+..|.++++-+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455556666666778888888888888888888888888888775432 122225555543
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.91 E-value=9.3 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 005487 481 MIAAYGSHGRALEALKLFGEMQQSN 505 (694)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (694)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777777543
No 395
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.19 E-value=1.2e+02 Score=30.39 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=47.9
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCC-CCccHHHHHHHH-hhcCChHHHHHHHHHHHh
Q 005487 578 DAGLLSTL---FSACRLHRDIEMGEKIAKLLIEKDPD-DSSTYIVLSNMY-ASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 578 ~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 641 (694)
|-..|..+ +..+.+.|-+..|.+..+-++.++|. ||-.....++.| .+.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 33444443 45677889999999999999999998 887777777764 456888877777776554
No 396
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.47 E-value=18 Score=21.65 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHhcCC
Q 005487 582 LSTLFSACRLHRDIEMGEKIAK--LLIEKDP 610 (694)
Q Consensus 582 ~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p 610 (694)
|..++..+...|++++|+.+++ -+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3344455555566666666633 4444444
No 397
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.04 E-value=1.3e+02 Score=30.67 Aligned_cols=136 Identities=15% Similarity=0.048 Sum_probs=61.8
Q ss_pred HHHHHHHhCCCCCchh--hhHHHHHHhcCCChhHHHHHHhhCCCCCc--hhhHHHHHHHHHccCChhHHHHHHHHhhhCC
Q 005487 25 IHQKVVTLGLQNNIAL--CKSLINLYFSCQNYDYAMLVFKTIDNPLD--LSLWNGLMASYTKNYMYITALELFDMLLQNP 100 (694)
Q Consensus 25 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 100 (694)
+.+.+++.|..++... ....+...+..|+.+-+.-+++.-..++. ....+. +-..+..|+.+.+..+++.-...
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~-L~~A~~~g~~~~v~~Ll~~~~~~- 94 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE-LHDAVEEGDVKAVEELLDLGKFA- 94 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccH-HHHHHHCCCHHHHHHHHHcCCcc-
Confidence 3445556777766533 45566666777887766666655332221 101222 33345667776655544422111
Q ss_pred CCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhH--HHHHHHhhhcCCChHHHHHHhccC
Q 005487 101 YLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVI--ASSTAGMYAKCNSFECAVKMFDEM 167 (694)
Q Consensus 101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 167 (694)
....+..- .+.+...+..|+. .+.+.+++.|..++... -.+.+...+..|+.+-+.-+++.-
T Consensus 95 ~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 95 DDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred cccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 00011111 1223333344554 34444555565544321 112233334556666555555543
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=69.77 E-value=2.2e+02 Score=32.93 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=54.9
Q ss_pred CChhhHHHHHHHHhccCChhH-HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHH-HHHhcCCCCChhHHHHHHHH
Q 005487 205 PNSVTLTTVISSCARLMDLDR-GKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAR-EVFEQTVLKSVVAWNALIAG 282 (694)
Q Consensus 205 ~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~ 282 (694)
++...-.....++...+..+. +...+..+.+ .++..+....+..+...|..+.+. .+...+..++...-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 344444444445544443321 2222333322 344555556666666666544332 23333344454445555555
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHH
Q 005487 283 YSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYII 335 (694)
Q Consensus 283 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 335 (694)
+...+.. ++...+..+.+ .|+...-...+.++.+......+...+....
T Consensus 831 L~~l~~~-~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 831 LAGAAAD-VAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhcccc-chHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 5555542 34444444433 2444444445555555432333444444333
No 399
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.17 E-value=1.4e+02 Score=32.34 Aligned_cols=50 Identities=28% Similarity=0.396 Sum_probs=31.4
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005487 552 LIDLLGRAGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDD 612 (694)
Q Consensus 552 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 612 (694)
|...+.+.|.++.-.++|+-. .++.+-.-.+|+.+|.+..+++.+++|+.
T Consensus 350 Ln~LlgrKG~leklq~YWdV~-----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 350 LNSLLGRKGALEKLQEYWDVA-----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHhhccchHHHHHHHHhHH-----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 344556666666655555432 23344445678888888888888887753
No 400
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.65 E-value=38 Score=25.60 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCccHHHHHHHHhhcCChH
Q 005487 578 DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD--DSSTYIVLSNMYASVKKWD 630 (694)
Q Consensus 578 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 630 (694)
|......+...+...|+++.|.+.+-.+++.+|+ +..+...+..++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456666667777777777777777777777654 3555566666666666644
No 401
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=1.3e+02 Score=29.67 Aligned_cols=216 Identities=17% Similarity=0.166 Sum_probs=126.6
Q ss_pred cCChHHHHHHHHHHH-----HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005487 422 LAALEKGKEIHNHII-----ESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALK 496 (694)
Q Consensus 422 ~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 496 (694)
.++.+.|.+-+-... ..+...+..++..++..|...++|+.--+. +.....++|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~--------------i~~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQ--------------IRLLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHhhHHHHHHH
Confidence 556666655443332 234455666677777777777777653322 1222345566666554
Q ss_pred HH-HHHH-HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHhhhcCCHHHHHHHHHh
Q 005487 497 LF-GEMQ-QSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR---NEHYSCLIDLLGRAGRLQEAYGILQS 571 (694)
Q Consensus 497 ~~-~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 571 (694)
.. ++.. -..-.||..+-..++..+. ... +..+-.. ...-..|...+..+|+.++|..++.+
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tLr-------------~Vt-egkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~e 156 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETLR-------------TVT-EGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCE 156 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHHH-------------Hhh-cCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 32 2222 1122455555544444322 111 1111111 22334577888999999999999998
Q ss_pred CCC-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------cHHHHHHHHhhcCChHHHHHHHH
Q 005487 572 TPE-----IRE--DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS-------TYIVLSNMYASVKKWDEVRKIRL 637 (694)
Q Consensus 572 ~~~-----~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 637 (694)
.+- ... -......-+..|...+|+-.|.-.-++.....-+++. .|..++......+.+=++-+.++
T Consensus 157 l~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yr 236 (439)
T KOG1498|consen 157 LQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYR 236 (439)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 662 111 1223344456788899999999888887665433332 57777888888999999999999
Q ss_pred HHHhCCCccCCceeEEEECCEEEEEEeC
Q 005487 638 KMKELGLRKNPGCSWIEIGDRIQPFFAE 665 (694)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
..-+.|..+....-|.+.-..+..|+..
T Consensus 237 aiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 237 AIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHhcccccccChhhhhhhhhhheeEEee
Confidence 9888887666555566553334344333
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.83 E-value=30 Score=28.16 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcC--CCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 597 MGEKIAKLLIEKD--PDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 597 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
.+.++|+.+...+ -..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777776544 45666788888888888888888888874
No 403
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.95 E-value=2.1e+02 Score=31.12 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=35.2
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 005487 171 DVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLM 221 (694)
Q Consensus 171 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 221 (694)
+....=.+|-.+.|.|++++|.++.....+. +......+...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 4444457888899999999999999666543 4566677788888887653
No 404
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.60 E-value=17 Score=34.04 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCC
Q 005487 589 CRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNPGCSWIEIGDRIQPFFAEDKF 668 (694)
Q Consensus 589 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (694)
..+.|+.++|..+|+.++.+.|.++.+....|......++.-+|-..+-+.. .-.|+++- +++.+++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL----tisP~nse--------ALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL----TISPGNSE--------ALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee----eeCCCchH--------HHhhhhcc
Confidence 4578999999999999999999999999999998888888888877776543 33444441 23445555
Q ss_pred CCChHHHHH
Q 005487 669 YPQADMVYE 677 (694)
Q Consensus 669 ~~~~~~~~~ 677 (694)
-|-...+=+
T Consensus 194 ~plV~~iD~ 202 (472)
T KOG3824|consen 194 TPLVSAIDR 202 (472)
T ss_pred chHHHHHHH
Confidence 555555443
No 405
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.35 E-value=2e+02 Score=30.20 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=35.7
Q ss_pred HHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhh-cCCChHHHHHHhccC
Q 005487 114 KACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYA-KCNSFECAVKMFDEM 167 (694)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 167 (694)
..+.+.|.+..|......+.+.....|+.....+|..|+ +..++.-.+++++..
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445577777777777777777665556666666677654 556666666666654
No 406
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.14 E-value=13 Score=34.96 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 005487 546 NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLST-LFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNM 622 (694)
Q Consensus 546 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 622 (694)
+..|...+.-..+.|-+.+.-.++.++.+..| +...|-. ...-+..+++++.+..++++.+..+|++|..|......
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 33333333333333444444444444443334 3445543 22335567888888999999999999888887765443
No 407
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=61.79 E-value=70 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHH
Q 005487 389 DYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHII 436 (694)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 436 (694)
+.-++.+-+..+....+.|++....+.+++|.+.+|+..|.++++-+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344556666666677778888888888888888888888888888765
No 408
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.22 E-value=1.8e+02 Score=28.99 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=10.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC
Q 005487 550 SCLIDLLGRAGRLQEAYGILQST 572 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~ 572 (694)
+.|.+.|..-+.++.|-.+..+.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcc
Confidence 33444444444444444444443
No 409
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.98 E-value=98 Score=25.88 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=48.4
Q ss_pred HHHHHHhhhcCCChHHHHHHhccCCC---------CCcccHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCChhhHHHH
Q 005487 144 ASSTAGMYAKCNSFECAVKMFDEMSE---------RDVASWNTVISCYYQDGQ-AEKALELFKKMRGSGFQPNSVTLTTV 213 (694)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 213 (694)
.++++.-....+++.-.+.+++.+.. .+...|+.++.+...... ---+..+|..|++.+.++++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555544555555555555555432 355667777777755544 33456677777777777777788888
Q ss_pred HHHHhccC
Q 005487 214 ISSCARLM 221 (694)
Q Consensus 214 l~~~~~~~ 221 (694)
+.++.+-.
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 87776653
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.74 E-value=31 Score=30.72 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=17.3
Q ss_pred CCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC
Q 005487 542 IQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE 577 (694)
Q Consensus 542 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 577 (694)
..|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555555555555555555555554444443333
No 411
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.43 E-value=46 Score=31.37 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=95.5
Q ss_pred HHHHHHHhhCCCChhhHhHHHHHHHHhCCCCCchhhhHHHH-HHhcCC-ChhHHHHHHhhCCCCCchhhHHHHHHHHHcc
Q 005487 6 ILTLLRTCTGSKSLKEGKIIHQKVVTLGLQNNIALCKSLIN-LYFSCQ-NYDYAMLVFKTIDNPLDLSLWNGLMASYTKN 83 (694)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (694)
+.-+|+.+...++.++|. +-..++.+| .|...+++.|.. -+.+.| ...=|.++|+.....+ ..+.+++.+-+-
T Consensus 135 ~Llflk~F~e~Er~KLA~-~Tal~l~nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek---~i~~lis~Lrkg 209 (412)
T KOG2297|consen 135 FLLFLKLFEENERKKLAM-LTALLLSNG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK---DINDLISSLRKG 209 (412)
T ss_pred HHHHHHccCHHHHHHHHH-HHHHHHhCC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc---cHHHHHHHHHhc
Confidence 344455555555555553 223334445 555555555553 444555 3555778888765544 346777776555
Q ss_pred CChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCC-----------CchhHHHHHHHHHHHcCCCchhHHHHHHHhhh
Q 005487 84 YMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLG-----------SVGIGKMIHTHLIKTGFLLDVVIASSTAGMYA 152 (694)
Q Consensus 84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (694)
+.-++..++ +||+..+-.....-+...| ....+++-++ ..|..-..
T Consensus 210 ~md~rLmef---------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq--------------~~L~~q~s 266 (412)
T KOG2297|consen 210 KMDDRLMEF---------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQ--------------KELQEQVS 266 (412)
T ss_pred ChHhHHHHh---------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhc
Confidence 444443332 4677666555554444333 2222222222 22333334
Q ss_pred cCCChHHHHHHhcc-CCC---CCc----ccHHHHHHHHHhCCChh-HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh
Q 005487 153 KCNSFECAVKMFDE-MSE---RDV----ASWNTVISCYYQDGQAE-KALELFKKMRGSGFQPNSVTLTTVISSCARLMDL 223 (694)
Q Consensus 153 ~~g~~~~A~~~~~~-~~~---~~~----~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 223 (694)
+...+++......+ |.. |++ ..|..++++---+.+-+ -|.+.+..+ .+|.-++.+++..|+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQS 337 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChH
Confidence 45556666555443 322 443 35877776643332221 222333333 3688899999999987
Q ss_pred hHHH
Q 005487 224 DRGK 227 (694)
Q Consensus 224 ~~a~ 227 (694)
+...
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 7543
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.34 E-value=79 Score=24.89 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhh
Q 005487 72 LWNGLMASYTKNYMYITALELFDMLLQ 98 (694)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 98 (694)
-|..|+..|..+|..++|++++.....
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.90 E-value=1.6e+02 Score=27.85 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=63.8
Q ss_pred HHhcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHcccCChH-HHHHHHHHHHH---hC--CCCChhHHHHHHHH
Q 005487 384 YVTVGDYFKALAIY----SDMKEVGAKPDAVTFTSVLPACSQLAALE-KGKEIHNHIIE---SK--LETNEIVMGALLDM 453 (694)
Q Consensus 384 ~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~~~ 453 (694)
+.+.|+...|.++- +-..+.+.+++......++..+...+.-+ .-..+.+.+++ .+ ...++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 44455544433332 22333455556555555555443332211 12223333322 11 22467778888999
Q ss_pred HHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHccCCHHHHHHH
Q 005487 454 YAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITF-LALLSACSHAGWVDEGGYY 532 (694)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~ 532 (694)
|.+.|++.+|...|-....++...+..++.... ..|.+.+...| ...+--|.-.++...|...
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~----------------~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWS----------------TKGYPSEADLFIARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHH----------------HHTSS--HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHH----------------HhcCCcchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999988887765544333333222222222 22222222222 2222345666888888888
Q ss_pred HHHhHHh
Q 005487 533 FNLMISE 539 (694)
Q Consensus 533 ~~~~~~~ 539 (694)
++...+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777643
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.62 E-value=60 Score=24.17 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHH
Q 005487 226 GKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSC 292 (694)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 292 (694)
+.++++.+.+.|+- +......+...-...|+.+.|..+++.++ ..+..|..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34556666666532 22222222222235577888888888888 7777888888887777765544
No 415
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.62 E-value=35 Score=28.38 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCCh
Q 005487 563 QEAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKW 629 (694)
Q Consensus 563 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 629 (694)
+.|.++.+-|- ........+......|++.-|.++.+.++..+|+|..+....+++|.+.|.-
T Consensus 58 ~~A~~~v~l~G----G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG----GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 34444444442 2233344455566789999999999999999999999999999888877643
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.34 E-value=96 Score=25.25 Aligned_cols=43 Identities=7% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHH
Q 005487 493 EALKLFGEMQQSNARPD-SITFLALLSACSHAGWVDEGGYYFNL 535 (694)
Q Consensus 493 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (694)
.+.++|+.|...|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66667777766655444 34555555566666666666666654
No 417
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.18 E-value=1.8e+02 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=9.5
Q ss_pred hcCCChHHHHHHhccCC
Q 005487 152 AKCNSFECAVKMFDEMS 168 (694)
Q Consensus 152 ~~~g~~~~A~~~~~~~~ 168 (694)
....++++|+-+++...
T Consensus 194 iglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICV 210 (422)
T ss_pred eccccHHHHHHHHHHHH
Confidence 34456666666665543
No 418
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.93 E-value=1.4e+02 Score=27.16 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=28.9
Q ss_pred hhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005487 468 NELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPD 509 (694)
Q Consensus 468 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 509 (694)
+-...|.+.....++..+.. +++++|.+++.++-+.|+.|.
T Consensus 232 Kv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 232 KVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 33344777777777766544 678888888888888887664
No 419
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.51 E-value=1.4e+02 Score=28.17 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=52.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHh---
Q 005487 482 IAAYGSHGRALEALKLFGEMQQS--NARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLL--- 556 (694)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~--- 556 (694)
|++++..+++.+++...-+-.+. .++| .....-|-.|.+.+....+.++-...... .-+.+...|..+++.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 56777777777777665544432 1233 33333444577778888877777777633 2222233455555444
Q ss_pred --hhcCCHHHHHHHHHhCC
Q 005487 557 --GRAGRLQEAYGILQSTP 573 (694)
Q Consensus 557 --~~~g~~~~A~~~~~~~~ 573 (694)
.-.|.+++|.++...-.
T Consensus 167 VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHhccccHHHHHHHHhcCC
Confidence 45788888888885544
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.26 E-value=64 Score=24.05 Aligned_cols=65 Identities=8% Similarity=0.092 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHH
Q 005487 126 KMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKAL 192 (694)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 192 (694)
.++++...+.|+ .+......+...-...|+.+.|.++++.++ +.+..|...+.++...|.-.-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 455666666653 222223332222235678888888888888 77778888888888777655543
No 421
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.18 E-value=2.8e+02 Score=30.21 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=68.8
Q ss_pred HHHhcCChHHHHHHHhhCCC-CChH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 005487 453 MYAKCGAVDEAFKVFNELPE-RDLV----SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVD 527 (694)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 527 (694)
++..-|+.++|..+.+++.. .|+. ...++..+|+-.|+.....+++.-.+.. +..|..-...+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 34455666677777777765 3433 1233555677777765555555554543 2333444444445566666777
Q ss_pred HHHHHHHHhHHhcCCCCChH--HHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 005487 528 EGGYYFNLMISEYNIQPRNE--HYSCLIDLLGRAGRLQEAYGILQSTPE 574 (694)
Q Consensus 528 ~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 574 (694)
....+...+.+.+ .|.+. +-..|+-+|.-.|. .+|+.+++.+..
T Consensus 589 ~~~s~V~lLses~--N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSESY--NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhhc--ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7777777776433 44443 33445555555554 678888888873
No 422
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.84 E-value=2.5e+02 Score=29.26 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcC---CC----CCccHHHHHHHHhhcCC-hHHHHHHHHHHHhCC
Q 005487 576 REDAGLLSTLFSA--CRLHRDIEMGEKIAKLLIEKD---PD----DSSTYIVLSNMYASVKK-WDEVRKIRLKMKELG 643 (694)
Q Consensus 576 ~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 643 (694)
++|......++.+ .+..|+-..|...++...+.. .. -|-+++.++-+|...|. .+++..++.++++.+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 5666666655544 445799999999998887432 11 45578889999999988 999999999988655
No 423
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.53 E-value=3e+02 Score=30.05 Aligned_cols=50 Identities=16% Similarity=-0.035 Sum_probs=35.0
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCC-------hHHHHHHHHHhhhcCCHHHHHHHHH
Q 005487 521 SHAGWVDEGGYYFNLMISEYNIQPR-------NEHYSCLIDLLGRAGRLQEAYGILQ 570 (694)
Q Consensus 521 ~~~g~~~~A~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 570 (694)
.-.+++..|....+.+.....-.|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3458899999999988754332332 3344455556667899999999997
No 424
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=55.88 E-value=2e+02 Score=27.80 Aligned_cols=146 Identities=10% Similarity=0.105 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc--cC----CHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHhhhcCCHH
Q 005487 492 LEALKLFGEMQQSNARPDSITFLALLSACSH--AG----WVDEGGYYFNLMISEYNIQPRNE--HYSCLIDLLGRAGRLQ 563 (694)
Q Consensus 492 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 563 (694)
++.+.+++.|.+.|+.-+..++......... .. ....|..+|+.|.+++.+--+.. ++..+ .-...++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l--LA~~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL--LAMTSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHH--HhcccccHH
Confidence 4456677888888887776555543332222 22 34568888888887655432222 33322 222334433
Q ss_pred ----HHHHHHHhCCC--CCC-CH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCccHHHHHHHHhh-cCChHHH
Q 005487 564 ----EAYGILQSTPE--IRE-DA-GLLSTLFSACRLHRD--IEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS-VKKWDEV 632 (694)
Q Consensus 564 ----~A~~~~~~~~~--~~p-~~-~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A 632 (694)
.+..+|+.+.+ +.. +. ..+..++..+....+ ..++.++++.+-+.+-.-...+.....++.- .+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 33444444332 222 22 334444433322222 4466777777766553333333333334333 3333244
Q ss_pred HHHHHHH
Q 005487 633 RKIRLKM 639 (694)
Q Consensus 633 ~~~~~~~ 639 (694)
.+.+..+
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4444443
No 425
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.69 E-value=76 Score=25.76 Aligned_cols=69 Identities=6% Similarity=0.138 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCccHHHHHHHHhhcCChHHHHHHHH
Q 005487 563 QEAYGILQSTPEIREDAGL---LSTLFSACRLHRDIEMGEKIAKLLIEKD--PDDSSTYIVLSNMYASVKKWDEVRKIRL 637 (694)
Q Consensus 563 ~~A~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 637 (694)
+++.+.|........|+.. |..++.. .++ ..++|+.+...+ -..+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~---~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADN---CDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHh---cCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444455444444555543 3333332 233 455666665544 4466678888888888899999988876
No 426
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.63 E-value=1.1e+02 Score=28.69 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=49.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhH-----
Q 005487 179 ISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYG----- 253 (694)
Q Consensus 179 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 253 (694)
|.+++..++|.+++...-+.-+.--+........-|-.|.+.+++..+.++-...+...-..+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 567778888888777555443321122233344445556777777777777766665432333334555555443
Q ss_pred hcCChHHHHHHH
Q 005487 254 KCGCLEMAREVF 265 (694)
Q Consensus 254 ~~g~~~~A~~~~ 265 (694)
-.|.+.+|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 427
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.50 E-value=1.9e+02 Score=27.48 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhcCChHHHH
Q 005487 341 GDVFINSSLIDLYFKCGRVSSAENVFEKMS-----KTDVVYWNVMISGYVTVGDYFKAL 394 (694)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~ 394 (694)
++..+...++..++..+++.+-.++++... ..|...|..++......|+..-..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 334444445555555555555555554432 235556666666666666654333
No 428
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.48 E-value=1.7e+02 Score=26.93 Aligned_cols=71 Identities=10% Similarity=-0.091 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHH
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIV 618 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 618 (694)
.+..+..++...|++-++++.-.++....|+ ...+..-+.+....=+.++|.+-+.++++++|.-..+...
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 3444566777778888887777777665554 3455555666666668889999999999988864444333
No 429
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.37 E-value=99 Score=24.15 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=46.6
Q ss_pred CCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 005487 118 GLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKK 197 (694)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 197 (694)
-....++|..|.+.+...+.. ...+.-..+..+...|++++|+..=.....||...|-+|-. .+.|-.+++..-+..
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 344667777777777766531 22222222334667888888855544555577777765543 477777777777777
Q ss_pred HHhCC
Q 005487 198 MRGSG 202 (694)
Q Consensus 198 m~~~~ 202 (694)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76554
No 430
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.81 E-value=1.9e+02 Score=27.39 Aligned_cols=58 Identities=14% Similarity=-0.022 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005487 548 HYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLL 605 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 605 (694)
++......|..+|.+.+|.++.++.....| +...+..++..+...||--.|...+++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345567889999999999999999988776 5677888889999999977777666654
No 431
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.80 E-value=1.6e+02 Score=28.55 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=26.8
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCC--CCChHHH--HHHHHHhhhcCCHHHHHHHHHh
Q 005487 519 ACSHAGWVDEGGYYFNLMISEYNI--QPRNEHY--SCLIDLLGRAGRLQEAYGILQS 571 (694)
Q Consensus 519 ~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 571 (694)
...+.++.++|+++++++..+... .|+...| ...++++...|+..++.+.+.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344445666666666666543221 2333222 3345555566666665555554
No 432
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.53 E-value=11 Score=35.90 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhH
Q 005487 489 GRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 489 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 537 (694)
|.++.|++.+...+..+ ++....|..-..++.+.++...|++=+....
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 33444444444444332 2223333333334444444444444444333
No 433
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=54.52 E-value=2.2e+02 Score=27.88 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHHHhcCCChhHHHHHHhhCCCCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCch
Q 005487 44 LINLYFSCQNYDYAMLVFKTIDNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVG 123 (694)
Q Consensus 44 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 123 (694)
+.+.+++.++.+.+..+-+.++.-+.. ...+|..++....-.+...+.+...... .||......++++.+......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~-vl~aL~~~LEh~~l~~~l~~~l~~~~~~---~~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPE-VLYALCGCLEHQPLPDKLAEALLERLEQ---APDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChH-HHHHHHHHhcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHcCCCchh
Confidence 444444444444444444444333333 3444444443333333322222222222 144444555555544443333
Q ss_pred hHHHHHHHHHH
Q 005487 124 IGKMIHTHLIK 134 (694)
Q Consensus 124 ~a~~~~~~~~~ 134 (694)
.....++.++.
T Consensus 248 ~~~~~i~~~L~ 258 (340)
T PF12069_consen 248 LVAILIDALLQ 258 (340)
T ss_pred HHHHHHHHHhc
Confidence 33333333333
No 434
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.33 E-value=2e+02 Score=27.36 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCCHHHHHH
Q 005487 441 ETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-----RDLVSWTSMIAAYGSHGRALEALK 496 (694)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~ 496 (694)
.++..+...+++.++..+++..-.++++.... .|...|..++......|+..-...
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 45555555666666666666666666665443 455566666666666666443333
No 435
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.25 E-value=26 Score=31.26 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005487 564 EAYGILQSTPEIREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 564 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 610 (694)
...+..++..+..|++..+..++.++...|+.++|.+..+++....|
T Consensus 129 ~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444455555789999999999999999999999999999998888
No 436
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.07 E-value=3.3e+02 Score=29.86 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=89.3
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCC---cccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhc
Q 005487 77 MASYTKNYMYITALELFDMLLQNPYLKPD---SYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAK 153 (694)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (694)
+.-+.+.+.+++|++..+..... .|. ......++.-+...|+++.|-...-.|... +...|..-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 44566788899999888776543 442 234555666666777777777766666532 33344444444555
Q ss_pred CCChHHHHHHhccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 005487 154 CNSFECAVKMFDEMSE-RDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKE 232 (694)
Q Consensus 154 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 232 (694)
.++......++-.-+. .++..|..++..+.. .+. ..|.+.++. .+...|..+...-+... +
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~---Wp~~Lys~l~iisa~~~----------q 497 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE---WPGHLYSVLTIISATEP----------Q 497 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh---CChhhhhhhHHHhhcch----------H
Confidence 5544443333322222 345567777777765 222 222222221 12222322221111111 1
Q ss_pred HHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCCh
Q 005487 233 FIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSV 273 (694)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 273 (694)
..+. ..+......|+..|...++++.|..++-...+.+.
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1111 12223344488888999999999888877765543
No 437
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.01 E-value=2e+02 Score=27.17 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=22.6
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCCCCHHHH
Q 005487 281 AGYSSRGDSKSCVKLFWRMNEEGIKPTLTTI 311 (694)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 311 (694)
+-..+.+++++|...+.++...|+..|..+.
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 3445677888888888888888877665544
No 438
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.83 E-value=2.1e+02 Score=28.59 Aligned_cols=171 Identities=9% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCChHHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHHHhC---------CCCCCh
Q 005487 143 IASSTAGMYAKCNSFECAVKMFDEMSE------RDVASWNTVISCYYQDGQAEKALELFKKMRGS---------GFQPNS 207 (694)
Q Consensus 143 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~ 207 (694)
.+.-+...|..+|+++.|++.+.+.++ .....|-.+|.+-...|+|........+..+. -+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhCC-----CCchhHHHHHHHhhHhcCChHHHHHHHhcC-----CCCChhHHH
Q 005487 208 VTLTTVISSCARLMDLDRGKEIHKEFIKDGF-----VSDSYISSALVDMYGKCGCLEMAREVFEQT-----VLKSVVAWN 277 (694)
Q Consensus 208 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~ 277 (694)
..+..+...+.+ .-...|...+..-..... .|...+.-..+.+++..++-+--+.+.... .+..+..+.
T Consensus 232 ~C~agLa~L~lk-kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 232 KCAAGLANLLLK-KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 005487 278 ALIAGYSSRGDSKSCVKLFWRMNEE-----GIKPTLTTISSVLM 316 (694)
Q Consensus 278 ~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~ 316 (694)
.+...| .+++...+++++++... -+.|...++..+|+
T Consensus 311 il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 311 ILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 439
>PRK12798 chemotaxis protein; Reviewed
Probab=53.71 E-value=2.5e+02 Score=28.31 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=120.3
Q ss_pred HhcCChHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHccCCHHHHHHH
Q 005487 455 AKCGAVDEAFKVFNELPERDLV-SWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSA-CSHAGWVDEGGYY 532 (694)
Q Consensus 455 ~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~ 532 (694)
..-|+++-...++..-..++.. ....-+.+| -.|+..++.+.+..+....+++....+..|+.+ .....+...|+.+
T Consensus 92 lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~ 170 (421)
T PRK12798 92 LSGGNPATLRKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKL 170 (421)
T ss_pred hcCCCHHHHHHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHH
Confidence 4557777666666655543332 112222333 358999999999998877667777778888774 5666789999999
Q ss_pred HHHhHHhcCCCCChH----HHHHHHHHhhhcCCHHHHHHHHHhCCC---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005487 533 FNLMISEYNIQPRNE----HYSCLIDLLGRAGRLQEAYGILQSTPE---IRE-DAGLLSTLFSACRLHRDIEMGEKIAKL 604 (694)
Q Consensus 533 ~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 604 (694)
|+... -..|.+- ....-+......|+.+++..+-..... ..| -..++..+.....+.++-..-.. +..
T Consensus 171 lD~aR---LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~ 246 (421)
T PRK12798 171 LDQAR---LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVE 246 (421)
T ss_pred HHHHH---HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHH
Confidence 99987 4466643 333445567788999886655544332 223 24556666666666654443333 444
Q ss_pred HHh-cCCC-CCccHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 605 LIE-KDPD-DSSTYIVLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 605 ~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
++. .+|+ ....|..++..-.-.|+.+-|.-.-++.....
T Consensus 247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 444 4553 45578888888899999999988888776544
No 440
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.13 E-value=20 Score=33.77 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHH-HHHHHhhcCChHHHHHHHHHHHhCCCccCCcee
Q 005487 575 IREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIV-LSNMYASVKKWDEVRKIRLKMKELGLRKNPGCS 651 (694)
Q Consensus 575 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 651 (694)
...|+.+|...+....+.|-+.+-...+.++++..|.|...|.. -..-+...++++.++.++. .|++-++..+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~----~glR~N~~~p 176 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL----KGLRMNSRSP 176 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH----hhhccCCCCc
Confidence 56688899988888888899999999999999999999999887 3445777899999988777 4555555444
No 441
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.94 E-value=72 Score=24.33 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHHHH
Q 005487 527 DEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAGLL 582 (694)
Q Consensus 527 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 582 (694)
....+.++++..+ +....+.....|+-.|.+.|+.|.|.+-|+.-...-|.+..+
T Consensus 54 ~~le~~~ek~~ak-~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 54 AALEKYLEKIGAK-NGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHHHhhc-CCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 3344455555533 222223344566777777777777777777655555554433
No 442
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.85 E-value=2.4e+02 Score=27.62 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhh---cCChHHHHHHHHH
Q 005487 563 QEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS---VKKWDEVRKIRLK 638 (694)
Q Consensus 563 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 638 (694)
+.-+.+++++.+..|+ ...+..++..+.+.-+.+.....+++++..+|+++..|..+.+.... .-.+++..++|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4556666666554554 45666777777777788888888888888888888888887765444 2356677766666
Q ss_pred HH
Q 005487 639 MK 640 (694)
Q Consensus 639 ~~ 640 (694)
..
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 54
No 443
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.85 E-value=2e+02 Score=26.33 Aligned_cols=165 Identities=11% Similarity=0.151 Sum_probs=81.9
Q ss_pred HHHhCCC--CCchhhhHHHHHHhcCC------ChhHHHHHHhhCCC---CCchhhHHHHHHHHHccCChhHHHHHHHHhh
Q 005487 29 VVTLGLQ--NNIALCKSLINLYFSCQ------NYDYAMLVFKTIDN---PLDLSLWNGLMASYTKNYMYITALELFDMLL 97 (694)
Q Consensus 29 ~~~~~~~--~~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 97 (694)
+++++.+ ..+++-.+-|..+++.. +++ .-.+++..+ --.. +...-+..|.+.-+|.-|-..++++.
T Consensus 81 vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhK--IiILDEADSMT~gAQQ-AlRRtMEiyS~ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 81 VLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHK--IIILDEADSMTAGAQQ-ALRRTMEIYSNTTRFALACNQSEKII 157 (333)
T ss_pred hhhccCccccccHHHHHHHHHHHHhhccCCCCcee--EEEeeccchhhhHHHH-HHHHHHHHHcccchhhhhhcchhhhh
Confidence 3444433 34678888888887663 221 111222211 1111 44555666777777766666555554
Q ss_pred hCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCCChHHHHHHhccC----------
Q 005487 98 QNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEM---------- 167 (694)
Q Consensus 98 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------- 167 (694)
+- - .+-..++ -|.+..+.....++.+-....+++-+..-..+++ +...||...|+..++.-
T Consensus 158 EP-----I-QSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~e 228 (333)
T KOG0991|consen 158 EP-----I-QSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQE 228 (333)
T ss_pred hh-----H-HhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchh
Confidence 21 1 1111222 2444445444455555555555555544444443 45667777766655442
Q ss_pred ------CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005487 168 ------SERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPN 206 (694)
Q Consensus 168 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 206 (694)
.+|.+.....++..+ ..+++++|.+.+.++-+.|+.|.
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 224444444444433 34456666666666665555443
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.11 E-value=60 Score=20.94 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=20.1
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 005487 183 YQDGQAEKALELFKKMRGSGFQPNSVTLTTVIS 215 (694)
Q Consensus 183 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 215 (694)
.+.|-..++...++.|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666666666666666665555543
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.89 E-value=1.9e+02 Score=27.69 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHh----------cCCHHHH
Q 005487 293 VKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFK----------CGRVSSA 362 (694)
Q Consensus 293 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A 362 (694)
.++++.|.+.++.|.-..|..+.-.+.+.=.+..+..+|+.+...... +..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467788888888998888888888888888888888888887654322 4444444442 3566666
Q ss_pred HHHHhcCCCCChh
Q 005487 363 ENVFEKMSKTDVV 375 (694)
Q Consensus 363 ~~~~~~~~~~~~~ 375 (694)
.++++.-+..|..
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 6666555544443
No 446
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.59 E-value=1.2e+02 Score=23.62 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005487 425 LEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPERDLVSWTSMIAAYGSHGRALEALKLFGEMQQS 504 (694)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (694)
.++|..+.+.+...+. ....+-..-+..+.+.|++++|+..=.....||...|.+| +-.+.|-.+++...+.++-.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHhC
Confidence 4455555555544332 1222222233345667777777433333333666666444 334566666666666666655
Q ss_pred C
Q 005487 505 N 505 (694)
Q Consensus 505 ~ 505 (694)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 447
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.02 E-value=2.6e+02 Score=26.81 Aligned_cols=146 Identities=11% Similarity=0.014 Sum_probs=76.6
Q ss_pred ChHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-----C--CH
Q 005487 459 AVDEAFKVFNELPE-RDLVSWTSMIAAYGS----HGRALEALKLFGEMQQSNARPDSITFLALLSACSHA-----G--WV 526 (694)
Q Consensus 459 ~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g--~~ 526 (694)
+...|..+|..... .++.....|...|.. ..+..+|...+++..+.|..+.......+...+..- - +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 45556666654443 223334444444444 337777888888887776433222233333333332 1 23
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC---------
Q 005487 527 DEGGYYFNLMISEYNIQPRNEHYSCLIDLLGR----AGRLQEAYGILQSTPEIREDAGLLSTLFSACRLHR--------- 593 (694)
Q Consensus 527 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~--------- 593 (694)
..|...+.++... + +......++..|.. ..+.++|...|+++.+... ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 172 KKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhc
Confidence 3677777777632 2 44445555555543 3477888888888764443 33333333 444444
Q ss_pred ------CHHHHHHHHHHHHhcCC
Q 005487 594 ------DIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 594 ------~~~~A~~~~~~~~~~~p 610 (694)
+...|...+.+.....+
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 55556666665555443
No 448
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.02 E-value=1.2e+02 Score=24.52 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 005487 496 KLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISE 539 (694)
Q Consensus 496 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 539 (694)
+-+..+..-++.|++......+++|.+-+++..|+++|+.+..+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555556677777777777777777777777777766543
No 449
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.84 E-value=2.8e+02 Score=27.18 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHhhh---cCCHHHHH
Q 005487 491 ALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQP-RNEHYSCLIDLLGR---AGRLQEAY 566 (694)
Q Consensus 491 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~ 566 (694)
.+.-+.+++++++.+ +.+......++..+.+..+.++..+-|+.+... .| +...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 345567777777763 344566666777777777777777888887743 33 34555555444332 22345555
Q ss_pred HHHHhCCC-------CC-------C--CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC
Q 005487 567 GILQSTPE-------IR-------E--DAG---LLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVK 627 (694)
Q Consensus 567 ~~~~~~~~-------~~-------p--~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 627 (694)
.+|.++.+ .. + ... ++..+.......|-.+.|...++..++.+--.|..... .
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~--------~ 194 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSS--------S 194 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccccc--------c
Confidence 55544221 10 1 111 22333445567899999999999999987322222111 1
Q ss_pred ChHHHHHHHHHHHhCCCcc
Q 005487 628 KWDEVRKIRLKMKELGLRK 646 (694)
Q Consensus 628 ~~~~A~~~~~~~~~~~~~~ 646 (694)
...+.++.|+..-+.+..+
T Consensus 195 ~~~~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 195 SFSERLESFEEFWESEVPR 213 (321)
T ss_pred cHHHHHHHHHHHhCcCCCC
Confidence 1125666777776666544
No 450
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.64 E-value=5e+02 Score=30.04 Aligned_cols=254 Identities=9% Similarity=-0.034 Sum_probs=139.1
Q ss_pred HHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChhhhHHHHHHHHHhcCCCc
Q 005487 263 EVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGD 342 (694)
Q Consensus 263 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 342 (694)
.+...+..+++..-...+..+.+.+..+ +...+..+... ++...-...+.++...+........+..+... +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 4444455667766666677766666533 44444444432 33333333444443332211112222222222 45
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 005487 343 VFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQL 422 (694)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 422 (694)
..+-...+..+...+.. ....+...+..+|...-...+.++.+.+..+.. ..... .++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHhc---CCCHHHHHHHHHHHHHh
Confidence 55555566666544321 123444555667776666667777666554322 22222 34555555556666655
Q ss_pred CChHH-HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH-HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005487 423 AALEK-GKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFK-VFNELPERDLVSWTSMIAAYGSHGRALEALKLFGE 500 (694)
Q Consensus 423 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (694)
++.+. +...+..+.. .++..+-...+.++...|..+.+.. +...+..++...-...+.++...+. .++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2333334332 4567777788888888887765533 4444445776666777778877765 456666666
Q ss_pred HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHH
Q 005487 501 MQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMIS 538 (694)
Q Consensus 501 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 538 (694)
+.+ .|+...-...+.++...+.-..+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 665 56777777777777775444567777777663
No 451
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=47.50 E-value=2.7e+02 Score=26.84 Aligned_cols=188 Identities=11% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCChHHHHH------------------
Q 005487 490 RALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSC------------------ 551 (694)
Q Consensus 490 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~------------------ 551 (694)
|-....-+++-+...++.+.......-+..+.+.+..|-+...++..- -..+-+..+..
T Consensus 15 DrHLifPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~---~sed~p~a~~ekr~~Vla~lkeLe~ev~p 91 (432)
T KOG2758|consen 15 DRHLIFPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLH---TSEDMPNALVEKRTEVLAELKELEEEVAP 91 (432)
T ss_pred hhHHHHHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhccc---ccccchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------HHHHhhhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 005487 552 ---------LIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSN 621 (694)
Q Consensus 552 ---------l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 621 (694)
+........+-..-++.+++--.+.|+ ..++..++.....+|++..|-.++-....+-++...-|.+..|
T Consensus 92 iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalw 171 (432)
T KOG2758|consen 92 IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALW 171 (432)
T ss_pred HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHH
Q ss_pred HHhhcC----ChHHHHHHHHHHHhCCCccCCceeEEEECCE---EEEEEeCCCCCCChHHHHHHHHHHH
Q 005487 622 MYASVK----KWDEVRKIRLKMKELGLRKNPGCSWIEIGDR---IQPFFAEDKFYPQADMVYECLAILA 683 (694)
Q Consensus 622 ~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (694)
--.... +|+.|.+-+.++++.--.+....+|..+... +||.+.-...||+.++. |.++.
T Consensus 172 GKlASEIL~qnWd~A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~---iid~f 237 (432)
T KOG2758|consen 172 GKLASEILTQNWDGALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDT---IIDMF 237 (432)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhH---HHHHH
No 452
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.14 E-value=3.3e+02 Score=27.80 Aligned_cols=146 Identities=7% Similarity=-0.006 Sum_probs=61.1
Q ss_pred hhhcCCChHHHHHHhccCCCC----CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCCh
Q 005487 150 MYAKCNSFECAVKMFDEMSER----DVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVT--LTTVISSCARLMDL 223 (694)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~ 223 (694)
..+..|+.+.+..+++.-... +....+. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.
T Consensus 74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred HHHHCCCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 344566666666666543321 1111122 2223344444 34444455555544321 12234444455555
Q ss_pred hHHHHHHHHHHHhCCCCchh--HHHHHHHhhHhcCChHHHHHHHhcCCCCChh---HHHHHHHHHHcCCCchHHHHHHHH
Q 005487 224 DRGKEIHKEFIKDGFVSDSY--ISSALVDMYGKCGCLEMAREVFEQTVLKSVV---AWNALIAGYSSRGDSKSCVKLFWR 298 (694)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~ 298 (694)
+.+. .+.+.|..++.. .-.+-+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+. ++.+.
T Consensus 149 ~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~ 220 (413)
T PHA02875 149 KGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRL 220 (413)
T ss_pred HHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHH
Confidence 4433 333444332211 1112223344556666665555544333211 112233323344443 34455
Q ss_pred HHHCCCCCCH
Q 005487 299 MNEEGIKPTL 308 (694)
Q Consensus 299 m~~~g~~p~~ 308 (694)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 5566665553
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.11 E-value=56 Score=35.80 Aligned_cols=28 Identities=25% Similarity=0.079 Sum_probs=14.2
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 005487 546 NEHYSCLIDLLGRAGRLQEAYGILQSTP 573 (694)
Q Consensus 546 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 573 (694)
..+|..|+....++|+.+-|...|++..
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3445555555555555555555555443
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.07 E-value=1.2e+02 Score=23.10 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=11.3
Q ss_pred HHHHccCCHHHHHHHHHHhH
Q 005487 518 SACSHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~ 537 (694)
......|++++|...+++.+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34455566666666666554
No 455
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.51 E-value=1.6e+02 Score=29.36 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--CCCccHH
Q 005487 549 YSCLIDLLGRAGRLQEAYGILQSTPE---IRED----AGLLSTLFSACRLHRDIEMGEKIAKLLIEKD--P--DDSSTYI 617 (694)
Q Consensus 549 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p--~~~~~~~ 617 (694)
|..+...|...|+...-..++..... ...| ....+.++..|...+.++.|.....+..--. . ..+...+
T Consensus 172 ~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~y 251 (493)
T KOG2581|consen 172 YFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLY 251 (493)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHH
Confidence 33344455555665555444443221 2222 3456777778888888888888877764211 1 1223455
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCC
Q 005487 618 VLSNMYASVKKWDEVRKIRLKMKELG 643 (694)
Q Consensus 618 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 643 (694)
.+|.+..-+++|..|.+.+-....+.
T Consensus 252 Y~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 252 YLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 57888888889999988887665433
No 456
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.41 E-value=3.4e+02 Score=27.78 Aligned_cols=43 Identities=26% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005487 377 WNVMISGYVT---VGDYFKALAIYSDMKEVGAKPDAVTFTSVLPAC 419 (694)
Q Consensus 377 ~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 419 (694)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444 578999999999999988777655444444443
No 457
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=46.14 E-value=44 Score=20.31 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=20.0
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHHH
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMK 640 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 640 (694)
.+|..||.+-...++|+.|.+=+++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 457778888888888888877776654
No 458
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.66 E-value=3.5e+02 Score=27.70 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=31.4
Q ss_pred HHHHHHHHHc---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 005487 276 WNALIAGYSS---RGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSG 322 (694)
Q Consensus 276 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 322 (694)
...++.++.+ .++++.|+..+..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4444444444 5789999999999999988887655555555444433
No 459
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.46 E-value=1.7e+02 Score=26.68 Aligned_cols=62 Identities=18% Similarity=0.047 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhcCCHHH-------HHHHHHhCCC--CCC----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005487 548 HYSCLIDLLGRAGRLQE-------AYGILQSTPE--IRE----D-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKD 609 (694)
Q Consensus 548 ~~~~l~~~~~~~g~~~~-------A~~~~~~~~~--~~p----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 609 (694)
.+..++..|-..|+.+. |.+.|+++.+ ..| + ..+...++....+.|+.++|...+.+++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445556666666443 4444444322 111 2 2334455566778899999999999988654
No 460
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.29 E-value=3.7e+02 Score=27.77 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCc
Q 005487 584 TLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGLRKNPG 649 (694)
Q Consensus 584 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 649 (694)
.-...+....+...+..-.+.+.-...+.+.....-...++..|++.+|.+++-. .++.+.+|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 3345556666777777777776666667777777778889999999999888764 45555554
No 461
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.77 E-value=1.4e+02 Score=23.52 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005487 173 ASWNTVISCYYQDGQAEKALELFKKMRG 200 (694)
Q Consensus 173 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 200 (694)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588888888888888888888888766
No 462
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.40 E-value=1.4e+02 Score=27.42 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=18.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC
Q 005487 485 YGSHGRALEALKLFGEMQQSNAR 507 (694)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~~~ 507 (694)
+...|+++.|+++.+.+++.|.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 45678999999999999988753
No 463
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=43.90 E-value=25 Score=28.17 Aligned_cols=27 Identities=37% Similarity=0.906 Sum_probs=20.5
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHH
Q 005487 649 GCSWIEIGDRIQPFFAEDKFYPQADMVYECL 679 (694)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (694)
|.||.+. +.|++||..||+...+++.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~ 28 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMK 28 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHH
Confidence 5678755 89999999999985555433
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.82 E-value=1.4e+02 Score=26.07 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=12.4
Q ss_pred HHHhhhcCCHHHHHHHHHhCC
Q 005487 553 IDLLGRAGRLQEAYGILQSTP 573 (694)
Q Consensus 553 ~~~~~~~g~~~~A~~~~~~~~ 573 (694)
+-.|.+.|.+++|.+++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 345556666666666666655
No 465
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.80 E-value=3.8e+02 Score=27.60 Aligned_cols=437 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHhCC--ChhHHHHHHHHHHhCCCCCChhhHHHH---HHHHhccCChhHHHHHHHHHHHhCCCCchh------HHH
Q 005487 178 VISCYYQDG--QAEKALELFKKMRGSGFQPNSVTLTTV---ISSCARLMDLDRGKEIHKEFIKDGFVSDSY------ISS 246 (694)
Q Consensus 178 li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 246 (694)
+...+...| ++..+++.++..-...+..-...-..+ --.+....+++.|+.-++......-+...+ +++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHhhHhcC-ChHHHHHHHhcCCC--CChhHHHH-----HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005487 247 ALVDMYGKCG-CLEMAREVFEQTVL--KSVVAWNA-----LIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSC 318 (694)
Q Consensus 247 ~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 318 (694)
.|...|.... .+..+..++++..+ .+...|.. ++..+.-..++..|.+++.-=-+. -.+--.+|..++...
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHH
Q ss_pred hcc---------CChhhhHHHHHHHHHhcCCC-------chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------
Q 005487 319 SRS---------GQLKHGKVMHGYIIRNKIQG-------DVFINSSLIDLYFKCGRVSSAENVFEKMSK----------- 371 (694)
Q Consensus 319 ~~~---------~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------- 371 (694)
... .+++.+......+.+..... -.+..+.-+..|.-.|+...+...++++..
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~ 251 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG 251 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Q ss_pred ---------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHcccCChHHHH
Q 005487 372 ---------------------TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVT-FTSVLPACSQLAALEKGK 429 (694)
Q Consensus 372 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~ 429 (694)
-.+-.|......-...|-+++|.++-++....--+....- ...++..+
T Consensus 252 h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~---------- 321 (629)
T KOG2300|consen 252 HDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMF---------- 321 (629)
T ss_pred ccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH----------
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------CChHHHHHHHHHHHhcCCHHHHHH
Q 005487 430 EIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE-------------RDLVSWTSMIAAYGSHGRALEALK 496 (694)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~ 496 (694)
-..+...++-+-.-.|++.+|++-+..|.. ........+..-+...|.++.|..
T Consensus 322 -------------km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~ 388 (629)
T KOG2300|consen 322 -------------KMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEF 388 (629)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHH
Q ss_pred HHHHHHHcCCCCCHhhHHHHHH--HHHccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHhhhcCCHHHHHHHH
Q 005487 497 LFGEMQQSNARPDSITFLALLS--ACSHAGWVDEGGYYFNLMISEYNIQPR-----NEHYSCLIDLLGRAGRLQEAYGIL 569 (694)
Q Consensus 497 ~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~ 569 (694)
-|....+.--.-|...+..+-- .|.+.|+-+.-.++++.+-....+..+ ...+..-+-....++++.||..++
T Consensus 389 hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l 468 (629)
T KOG2300|consen 389 HFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFL 468 (629)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q ss_pred HhCCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------cHHHHHHHHhhcCC--hHHHHH
Q 005487 570 QSTPE-------IREDAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSS------TYIVLSNMYASVKK--WDEVRK 634 (694)
Q Consensus 570 ~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~--~~~A~~ 634 (694)
.+..+ .+-..-.+..+.......||..++.....-+..+....+. ....+-++|...|+ .++.-+
T Consensus 469 ~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e 548 (629)
T KOG2300|consen 469 RETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE 548 (629)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Q ss_pred HHHH
Q 005487 635 IRLK 638 (694)
Q Consensus 635 ~~~~ 638 (694)
.+..
T Consensus 549 ~~~~ 552 (629)
T KOG2300|consen 549 AFRK 552 (629)
T ss_pred HHHH
No 466
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.30 E-value=2.5e+02 Score=27.27 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=66.4
Q ss_pred HHHHHHHhhCCC---CChHHHHHHHHHHHh------cCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHccCCHHHHH
Q 005487 461 DEAFKVFNELPE---RDLVSWTSMIAAYGS------HGRALEALKLFGEMQQSNARPDSI-TFLALLSACSHAGWVDEGG 530 (694)
Q Consensus 461 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 530 (694)
+++..+++.... |.+......|.++-. .-+|.....+|+-+... .|+++ +.|... +..+..-.+.++
T Consensus 273 ~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAV-Ala~~~Gp~agL 349 (415)
T COG4941 273 DEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAV-ALAMREGPAAGL 349 (415)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHH-HHHHhhhHHhHH
Confidence 444444443322 555555555544321 23567777777777774 46553 343333 334444466677
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH
Q 005487 531 YYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG 580 (694)
Q Consensus 531 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 580 (694)
...+.+.....+.--...+..-++.+.+.|+.++|...|+++....++..
T Consensus 350 a~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 350 AMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 77776653322222222334557888899999999999988776555543
No 467
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=42.08 E-value=3.4e+02 Score=26.49 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=77.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-----CCh---H-HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHhhHHH
Q 005487 449 ALLDMYAKCGAVDEAFKVFNELPE-----RDL---V-SWTSMIAAYGSHGRALEALKLFGEMQQS----NARPDSITFLA 515 (694)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~---~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~ 515 (694)
.++..|...+++.+|+.+...+.. .|- . .+..=-.+|....+..+|..-+...... -++|-...-..
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 366667777777777766554432 110 0 1111112344444555555544444322 12333322222
Q ss_pred HHHH--HHccCCHHHHHHHHHHhHHhcCCCCC-hHHH---HHHHHHhhhcCCHHHHHHHHHh--CCC-CCCCHHHHHHHH
Q 005487 516 LLSA--CSHAGWVDEGGYYFNLMISEYNIQPR-NEHY---SCLIDLLGRAGRLQEAYGILQS--TPE-IREDAGLLSTLF 586 (694)
Q Consensus 516 l~~~--~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~---~~l~~~~~~~g~~~~A~~~~~~--~~~-~~p~~~~~~~l~ 586 (694)
|..+ ++...++..|..+|-++.+.+..-.+ +... ..|+-.=...+..++.-.++.. ..+ ..|+......+.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 3221 33336777777777666543222122 2222 2222233345666665555543 111 345666666666
Q ss_pred HHHHHc--CCHHHHHHHHHHHHhcCC
Q 005487 587 SACRLH--RDIEMGEKIAKLLIEKDP 610 (694)
Q Consensus 587 ~~~~~~--~~~~~A~~~~~~~~~~~p 610 (694)
.++... .+++.|..-++.-+..+|
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 666543 467777776666655544
No 468
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.76 E-value=59 Score=18.88 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHH
Q 005487 594 DIEMGEKIAKLLIEKDPDDSSTYIVLS 620 (694)
Q Consensus 594 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 620 (694)
.++.|..+|++.+...| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46777778888777765 355555544
No 469
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.73 E-value=70 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=14.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhH
Q 005487 512 TFLALLSACSHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 537 (694)
-...++.++.+.|++++|.++.+.+.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444556666666666666666554
No 470
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.53 E-value=5.1e+02 Score=28.40 Aligned_cols=112 Identities=15% Similarity=0.241 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC-CChH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHhh
Q 005487 446 VMGALLDMYAKCGAVDEAFKVFNELPE-RDLV----------SWTSMIAAYGSHGRALEALKLFGEMQQSN--ARPDSIT 512 (694)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~ 512 (694)
+...++-.|-...+++...++.+.+.. ||.. .|.-.+.---+-||-++|+.+.-.+.+.. +.||..+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 334444455555666666666655554 3221 11111111123355666666665555432 3344322
Q ss_pred -----HHHHHH--HHHccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHhhhcC
Q 005487 513 -----FLALLS--ACSHAGWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAG 560 (694)
Q Consensus 513 -----~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 560 (694)
|..+.- .|...+..+.|...|++.- .+.|...+--.++..+...|
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhh
Confidence 222211 2334455566666666554 45565443333444444444
No 471
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.36 E-value=1.3e+02 Score=31.98 Aligned_cols=88 Identities=9% Similarity=0.032 Sum_probs=51.3
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHc
Q 005487 520 CSHAGWVDEGGYYFNLMISEYNIQPR------NEHYSCLIDLLGRAGRLQEAYGILQSTPEIREDAG-LLSTLFSACRLH 592 (694)
Q Consensus 520 ~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 592 (694)
..+..++..+.+.|..-.+. +..| ......|.-+|....++|.|.++++++.+.+|... .-..+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 34456677777776655532 2222 22344555667777777777777777776665433 233334455556
Q ss_pred CCHHHHHHHHHHHHhcC
Q 005487 593 RDIEMGEKIAKLLIEKD 609 (694)
Q Consensus 593 ~~~~~A~~~~~~~~~~~ 609 (694)
++-++|..+........
T Consensus 442 ~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSSE 458 (872)
T ss_pred cchHHHHHHHHHHHhhh
Confidence 77777777776665443
No 472
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.33 E-value=1.6e+02 Score=23.81 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 005487 192 LELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKD 236 (694)
Q Consensus 192 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 236 (694)
.+.++.+...++.|++......+++|.+.+|+..|.++++.++..
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444455556666666666666666666666666666665543
No 473
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=41.01 E-value=6.2e+02 Score=29.21 Aligned_cols=98 Identities=12% Similarity=0.151 Sum_probs=55.8
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCchhHHHHHHHHHHHcCCCchhHHHHHHHhhhcCC
Q 005487 76 LMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCN 155 (694)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (694)
+=.++.....+++|+..|+.+..+ +|--...|.+..++ ...+++++.+.|.+ .
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----------------~ 533 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRL---------GITLLEKASEQGDP----------------R 533 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHh---------hHHHHHHHHhcCCh----------------H
Confidence 335677778888888888888876 45445555554433 23444444443311 2
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHH--HHHhCCChhHHHHHHHHHHh
Q 005487 156 SFECAVKMFDEMSERDVASWNTVIS--CYYQDGQAEKALELFKKMRG 200 (694)
Q Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~ 200 (694)
.+++|+.-|+.+...-.....-|.. +|-+.|++++=++.+.-..+
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566777777766533333333333 45566676666666655544
No 474
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.85 E-value=1.6e+02 Score=24.70 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=16.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005487 280 IAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMS 317 (694)
Q Consensus 280 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 317 (694)
+..+...++.-.|.++++.+.+.+...+..|....+..
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~ 64 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKL 64 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 33334444444444444444444444444443333333
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.85 E-value=1.6e+02 Score=27.48 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=14.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC
Q 005487 550 SCLIDLLGRAGRLQEAYGILQST 572 (694)
Q Consensus 550 ~~l~~~~~~~g~~~~A~~~~~~~ 572 (694)
..++..|.+.|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566666666666666666655
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.59 E-value=96 Score=28.98 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=11.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhH
Q 005487 516 LLSACSHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~~~ 537 (694)
+..-|...|++++|.++|+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555553
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.32 E-value=1.4e+02 Score=25.94 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCh
Q 005487 277 NALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQL 324 (694)
Q Consensus 277 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 324 (694)
..++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334444444445556666666666666555555555555555554433
No 478
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.07 E-value=3.6e+02 Score=25.92 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----------cCChHHH
Q 005487 394 LAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAK----------CGAVDEA 463 (694)
Q Consensus 394 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 463 (694)
.++|+.+...++.|.-..|..+.-.+.+.=.+..+..+|+.+...... |..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356777777788888888777777777777788888888877653222 4444444432 4666666
Q ss_pred HHHHhhCCCCChHHHH
Q 005487 464 FKVFNELPERDLVSWT 479 (694)
Q Consensus 464 ~~~~~~~~~~~~~~~~ 479 (694)
.++++.-+.-|....-
T Consensus 338 mkLLQ~yp~tdi~~~l 353 (370)
T KOG4567|consen 338 MKLLQNYPTTDISKML 353 (370)
T ss_pred HHHHhcCCCCCHHHHH
Confidence 6666666555544433
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.04 E-value=2.8e+02 Score=24.56 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 005487 376 YWNVMISGYVTVGDYFKALAIYS 398 (694)
Q Consensus 376 ~~~~l~~~~~~~~~~~~A~~~~~ 398 (694)
.-|.....+.+.|..+.|+.+++
T Consensus 183 ivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 183 IVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hHHHHHHHHHHcCCchHHHHHHh
Confidence 34555666777777777777766
No 480
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.72 E-value=6.1e+02 Score=28.48 Aligned_cols=133 Identities=16% Similarity=0.045 Sum_probs=66.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHcCCCch
Q 005487 211 TTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSK 290 (694)
Q Consensus 211 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 290 (694)
.++...+...|+.+....+-..+.. +..++.-+...+.+++|++++.....+. ......-. .....+.
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~e--l~yk~ap~-Li~~~p~ 575 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPE--LFYKYAPE-LITHSPK 575 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchh--hHHHhhhH-HHhcCcH
Confidence 3344444455665555544443332 4567778888899999998887763332 21111111 1122333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---ChhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 005487 291 SCVKLFWRMNEEGIKPTLTTISSVLMSCSRSG---QLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGR 358 (694)
Q Consensus 291 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (694)
+....+..+.. ..+..-...++..+.+.+ ....+...++.....-...++..+|.++..|++..+
T Consensus 576 ~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 576 ETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 33333333322 222233334444444442 233344444444444445567777777777776544
No 481
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.10 E-value=5e+02 Score=27.35 Aligned_cols=23 Identities=22% Similarity=0.631 Sum_probs=17.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC
Q 005487 449 ALLDMYAKCGAVDEAFKVFNELP 471 (694)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~ 471 (694)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45666778888888888877765
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.95 E-value=1.3e+02 Score=25.29 Aligned_cols=64 Identities=17% Similarity=0.025 Sum_probs=35.5
Q ss_pred hHHHHHHhhCCCCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCC
Q 005487 55 DYAMLVFKTIDNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLG 120 (694)
Q Consensus 55 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 120 (694)
.++.+.+++..-+.+. ....++..+.+.+.+-.|.++++.+.+. +.+.+..|-...|..+...|
T Consensus 6 ~~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 6 EDAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 3445555555444444 4556666666666667777777777765 44444444444444443333
No 483
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.92 E-value=3.9e+02 Score=26.04 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CC--CHhhHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHh
Q 005487 481 MIAAYGSHGRALEALKLFGEMQQSNA-RP--DSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLL 556 (694)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 556 (694)
=..-|.+..++..|...|.+.++... .| +.+.|+.-..+....|++..++.=....+ .+.|+ ...|..-+.++
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al---~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL---KLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhhhhhhHHH
Confidence 34456666677777777776665432 12 23556666666666677777766666665 45565 33555556666
Q ss_pred hhcCCHHHHHHHHHhCC
Q 005487 557 GRAGRLQEAYGILQSTP 573 (694)
Q Consensus 557 ~~~g~~~~A~~~~~~~~ 573 (694)
....++++|....++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66666666666666654
No 484
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=37.26 E-value=2.1e+02 Score=22.65 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=12.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005487 483 AAYGSHGRALEALKLFGEMQQS 504 (694)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~ 504 (694)
..+...|+.-+|+++.++++..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3445556666666666666543
No 485
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.21 E-value=2.2e+02 Score=22.89 Aligned_cols=22 Identities=9% Similarity=-0.111 Sum_probs=14.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHH
Q 005487 618 VLSNMYASVKKWDEVRKIRLKM 639 (694)
Q Consensus 618 ~l~~~~~~~g~~~~A~~~~~~~ 639 (694)
+.+.++...|+.++|++.|+..
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 3455667778888888777653
No 486
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.87 E-value=1.2e+02 Score=19.61 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=20.1
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005487 284 SSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLM 316 (694)
Q Consensus 284 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 316 (694)
.+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666666666666666666665555543
No 487
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=2.6e+02 Score=27.19 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=34.0
Q ss_pred hcCChHHHHHHHhhCCC-------CChHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHh-hHHHHHH
Q 005487 456 KCGAVDEAFKVFNELPE-------RDLVSW--TSMIAAYGSHGRALEALKLFGEMQQ-----SNARPDSI-TFLALLS 518 (694)
Q Consensus 456 ~~g~~~~A~~~~~~~~~-------~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~-~~~~l~~ 518 (694)
+.++.++|++.++++.. |+.+.| ...++.+...||..++.+++.+..+ .+++|+.. .|..+-.
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 34455555555554432 444432 3445556667777777777766665 45666543 3444443
No 488
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.24 E-value=45 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005487 478 WTSMIAAYGSHGRALEALKLFGEMQQ 503 (694)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (694)
.-.++.++...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456677777777777777766654
No 489
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.62 E-value=2.4e+02 Score=28.53 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC-----------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005487 448 GALLDMYAKCGAVDEAFKVFNELPE-----------RDLVSWTSMIAAYGSHGRALEALKLFGEMQQ 503 (694)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (694)
..+++.++-.||+..|+++++.+.- -.+.++..++-+|...+++.+|.+.|....-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888776643 1233566677778888888888888877764
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.55 E-value=1.6e+02 Score=25.57 Aligned_cols=64 Identities=17% Similarity=0.026 Sum_probs=35.7
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHhhCCCCc
Q 005487 57 AMLVFKTIDNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSV 122 (694)
Q Consensus 57 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 122 (694)
+.++++...-+.+. ....++..+...+++-.|.++++.+.+. +..++..|-...|..+...|-+
T Consensus 13 ~~~~L~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 13 AEKLCAQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 34444443333444 4455666666666666777777777766 5555655555555555555443
No 491
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.47 E-value=45 Score=27.18 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=23.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005487 386 TVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPA 418 (694)
Q Consensus 386 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 418 (694)
..|.-..|..+|++|++.|-+||. |..|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 456667799999999999999886 4555544
No 492
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.46 E-value=52 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=20.3
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCcccHHHHHHHh
Q 005487 83 NYMYITALELFDMLLQNPYLKPDSYTYPSVLKAC 116 (694)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (694)
.|.-..|..+|+.|+++ |.+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~-G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLER-GNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhC-CCCCcc--HHHHHHHh
Confidence 35556777777888777 677665 55565543
No 493
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.10 E-value=66 Score=30.56 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 005487 275 AWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISS 313 (694)
Q Consensus 275 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 313 (694)
-|+..|....+.||+++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466778888888888888888888888877665555543
No 494
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.69 E-value=84 Score=29.91 Aligned_cols=40 Identities=33% Similarity=0.465 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005487 375 VYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTS 414 (694)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 414 (694)
.-|+..|....+.||+++|+.++++..+.|..--..+|..
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3467888888888999999999988888887655555543
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.66 E-value=1.4e+02 Score=22.87 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=21.3
Q ss_pred HHHHHHHHhcC-CCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 599 EKIAKLLIEKD-PDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 599 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
++.++++...+ |-.|..+-.|+-+|.+.|+-+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444444333 33445555666666666666666665554
No 496
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.53 E-value=45 Score=24.38 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHHHhcC------CCCCccHHHHHHHHhhcCChHHHHHHHHHHHh
Q 005487 592 HRDIEMGEKIAKLLIEKD------PDDSSTYIVLSNMYASVKKWDEVRKIRLKMKE 641 (694)
Q Consensus 592 ~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 641 (694)
.|+.+.|+.+|++++..- |- + .....-.|+.|.++.++|..
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~-~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPV-P--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCC-C--------cccccHHHHHHHHHHHHHHH
Confidence 366667777776665421 11 1 23455678888888888864
No 497
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=32.15 E-value=3.1e+02 Score=23.06 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHcCCC-chHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCh
Q 005487 272 SVVAWNALIAGYSSRGD-SKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQL 324 (694)
Q Consensus 272 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 324 (694)
+...|.+++.+..+... ---+..+|.-|.+.+.+++...|..++.++.+....
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 45567788877765555 334567788888878888888898888887766433
No 498
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=4.4e+02 Score=24.80 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=73.4
Q ss_pred CHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCCccHHHHHHHHhhcCChHHHHHHHHH
Q 005487 561 RLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIE-MGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLK 638 (694)
Q Consensus 561 ~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 638 (694)
++.+-++.++++.+..| +..+|..--......|+.. .-+++.+.++..+..+-.+|...-+++..-+.|+.-+.+..+
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 46667777877776444 5677776666666677777 778888999999999999999999999999999999999999
Q ss_pred HHhCCCccCCcee
Q 005487 639 MKELGLRKNPGCS 651 (694)
Q Consensus 639 ~~~~~~~~~~~~~ 651 (694)
+.+..+..+...-
T Consensus 173 Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 173 LLEEDIRNNSAWN 185 (318)
T ss_pred HHHHhhhccchhh
Confidence 9999988877544
No 499
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.80 E-value=6.9e+02 Score=27.00 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH
Q 005487 489 GRALEALKLFGEMQQSNARPDS 510 (694)
Q Consensus 489 ~~~~~A~~~~~~~~~~~~~p~~ 510 (694)
|++.+|.+.+-.+...+..|..
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp ----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHH
Confidence 5566666665555554444443
No 500
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=1.2e+02 Score=28.47 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=48.9
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 005487 552 LIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSST 615 (694)
Q Consensus 552 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 615 (694)
+=.++.++++++.|....++.....| ++.-+..-+.+|.+.|-...|.+-++..++.-|+++.+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34567788888888888888777655 45566777778888888888888888888888876554
Done!