Query 005487
Match_columns 694
No_of_seqs 632 out of 3926
Neff 11.5
Searched_HMMs 29240
Date Tue Mar 26 18:23:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005487.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1994-1998//hhsearch_pdb/005487hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 311.2 38.5 484 151-644 63-581 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 310.9 38.0 503 46-625 61-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 202.7 41.5 248 376-628 137-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 198.9 39.9 351 284-642 10-368 (388)
5 2gw1_A Mitochondrial precursor 1.0 1 1 194.5 30.4 239 377-619 240-489 (514)
6 4g26_A Pentatricopeptide repea 1.0 1 1 193.4 19.9 189 108-318 28-220 (501)
7 2gw1_A Mitochondrial precursor 1.0 1 1 192.6 33.5 253 387-644 202-480 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 192.2 30.5 445 72-617 27-500 (537)
9 4g26_A Pentatricopeptide repea 1.0 1 1 190.6 19.8 190 210-421 29-222 (501)
10 3fp2_A TPR repeat-containing p 1.0 1 1 179.9 34.4 429 173-644 26-493 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=311.20 Aligned_cols=484 Identities=10% Similarity=-0.027 Sum_probs=375.2
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 44179947899986037999933299999999947993499999999884999999423998999983359906899999
Q 005487 151 YAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIH 230 (694)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 230 (694)
+...|....+...+..++.++...|+.++..+.+.|++++|..+++.|.. ..|+..++..++..+...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 65567667887754663378999999999999874583479999999996--0899357999999999747699999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC-------------------HHHHHHHHHHHHCCCCCHH
Q ss_conf 999992898853588799896570699479999995189999-------------------1179999999972999027
Q 005487 231 KEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKS-------------------VVAWNALIAGYSSRGDSKS 291 (694)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~~~~~~ 291 (694)
+.+... +++..++..++.+|.+.|++++|..+|++....+ ..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 987335--456508999999999886699999998424886322323433432112351258999998899998399899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH--HH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 9999999888799988888999999952238702467--99-99999934789624899999998832997889999840
Q 005487 292 CVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGK--VM-HGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEK 368 (694)
Q Consensus 292 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 368 (694)
|...|++|.+.+. .+...+..+...+...+..+... .+ +..+...+......+++.++..|.+.|++++|..+|++
T Consensus 219 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999997293-256999999985034615678999865774234430889999999999998073139999999987
Q ss_pred CCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 799--885079999999972599589999999988869998879999999998154786999999999999199987149
Q 005487 369 MSK--TDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIV 446 (694)
Q Consensus 369 ~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (694)
+.+ ++..++..++..+.+.|++++|..+|+++...+ +.+..++..++.++...|+.+.|..+++.+.... +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHH
T ss_conf 64388309999999999998468999999999999729-5537999999999998277779999999998518-354799
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999998825993899999810999---995889999999996499799999999988769998976699999999800
Q 005487 447 MGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHA 523 (694)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 523 (694)
+..++.+|.+.|++++|..+|+.+.. .+..+|+.++..+.+.|++++|..+++++...+ +.+..++..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf 99999999983569999999999987297778999999999997577799999999999868-13438999999999985
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC------CCC--HHHHHHHHHHHHHCCCH
Q ss_conf 9889999999996883099987579999999863139989999999849999------989--89899999999980998
Q 005487 524 GWVDEGGYYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEI------RED--AGLLSTLFSACRLHRDI 595 (694)
Q Consensus 524 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~--~~~~~~l~~~~~~~~~~ 595 (694)
|++++|..+|+.+... .+.+..+|..++..|.+.|++++|..+++++.+. .|+ ...|..++..+...|++
T Consensus 455 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 455 GNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp TCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 7999999999999984--88876799999999998189999999999999853234545354999999999999980479
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999999721999985578999998624995899999999983799
Q 005487 596 EMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
++|...++++++.+|+++.+|..++.+|...|++++|.+.++++.+..+
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999973899738999999999981789999999999972088
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=310.94 Aligned_cols=503 Identities=10% Similarity=-0.024 Sum_probs=343.3
Q ss_pred HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH
Q ss_conf 99741899557999870178998142299999999806991489999999661999999953289899886078992268
Q 005487 46 NLYFSCQNYDYAMLVFKTIDNPLDLSLWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIG 125 (694)
Q Consensus 46 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 125 (694)
..+...|....+...+..++.++.. .|+.++..+.+.|++++|+.+|+.|... .|+..++..++.++.+.|+++.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSRED-YLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp ---------------------CHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 5665567667887754663378999-9999999998745834799999999960---89935799999999974769999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC-------------------CCCHHHHHHHHHHCC
Q ss_conf 8999999997578863378999885441799478999860379999-------------------332999999999479
Q 005487 126 KMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERD-------------------VASWNTVISCYYQDG 186 (694)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~~ 186 (694)
..+++.+... +++..+++.++.+|.+.|++++|..+|+++...+ ..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999987335--45650899999999988669999999842488632232343343211235125899999889999839
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH--HH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 93499999999884999999423998999983359906899--99-9999992898853588799896570699479999
Q 005487 187 QAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGK--EI-HKEFIKDGFVSDSYISSALVDMYGKCGCLEMARE 263 (694)
Q Consensus 187 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 263 (694)
++++|.+.|++|.+.+ +.+...+..+...+...+...... .+ +..+...+......++..++..|.+.|++++|..
T Consensus 215 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9899999999999729-325699999998503461567899986577423443088999999999999807313999999
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9951899--99117999999997299902799999998887999888889999999522387024679999999934789
Q 005487 264 VFEQTVL--KSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQG 341 (694)
Q Consensus 264 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 341 (694)
+|+++.. ++...++.++..+.+.|++++|..+|+++...+.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------------------- 336 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP------------------------------------- 336 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-------------------------------------
T ss_conf 9987643883099999999999984689999999999997295-------------------------------------
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 62489999999883299788999984079988507999999997259958999999998886999887999999999815
Q 005487 342 DVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQ 421 (694)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 421 (694)
.+..++..++.++...|++++|..+++.+.... +.+..++..++..+..
T Consensus 337 ------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 337 ------------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC 385 (597)
T ss_dssp ------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_conf ------------------------------537999999999998277779999999998518-3547999999999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 478699999999999919998714999999998825993899999810999---99588999999999649979999999
Q 005487 422 LAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLF 498 (694)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 498 (694)
.|+++.|.++++.+.+.. +.+...+..++.+|.+.|++++|.++|+.+.. .+..+|..++.+|.+.|++++|..+|
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 356999999999998729-7778999999999997577799999999999868134389999999999857999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 998876999897669999999980098899999999968830---99987--5799999998631399899999998499
Q 005487 499 GEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEY---NIQPR--NEHYSCLIDLLGRAGRLQEAYGILQSTP 573 (694)
Q Consensus 499 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 573 (694)
+++.... +.+..++..++..+.+.|++++|..+++++.... +..|+ ..+|..++.+|.+.|++++|...++++.
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999848-887679999999999818999999999999985323454535499999999999998047999999999999
Q ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9998-989899999999980998999999999972199998557899999862
Q 005487 574 EIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPDDSSTYIVLSNMYAS 625 (694)
Q Consensus 574 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 625 (694)
+..| +...|..++..+...|++++|...++++++.+|+++..+..++.+|..
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 73899738999999999981789999999999972088874899999998743
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=202.68 Aligned_cols=248 Identities=14% Similarity=0.091 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 79999999972599589999999988869998879999999998154786999999999999199987149999999988
Q 005487 376 YWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYA 455 (694)
Q Consensus 376 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (694)
.+..+...+...|++++|...|+++.... +.+..++..+...+...|+++.|...++.+...+ +.....+..+..++.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
T ss_conf 99999999998468999999999998729-8978999999999998599999999999998559-886799999999999
Q ss_pred HCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 25993899999810999---995889999999996499799999999988769998976699999999800988999999
Q 005487 456 KCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYY 532 (694)
Q Consensus 456 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 532 (694)
..|++++|...++.... .+...+..++..+...|++++|...++++...+ +.+...+..+...+...|++++|...
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 85789999999999985296878999999999998688999999999998649-99889999999999986997999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9996883099987579999999863139989999999849999989-898999999999809989999999999721999
Q 005487 533 FNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIAKLLIEKDPD 611 (694)
Q Consensus 533 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 611 (694)
++.+... .+.+...+..++.++...|++++|...++++.+..|+ ...+..++..+...|++++|...++++++..|+
T Consensus 294 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 294 YNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999864--94449999999999998489999999999998609873999977999999868889999999999861999
Q ss_pred CCCCHHHHHHHHHHCCC
Q ss_conf 98557899999862499
Q 005487 612 DSSTYIVLSNMYASVKK 628 (694)
Q Consensus 612 ~~~~~~~l~~~~~~~g~ 628 (694)
++..|..++.++...|+
T Consensus 372 ~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 372 FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 78999859999987459
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=198.95 Aligned_cols=351 Identities=14% Similarity=0.100 Sum_probs=239.5
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 72999027999999988879998888899999995223870246799999999347896248999999988329978899
Q 005487 284 SSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAE 363 (694)
Q Consensus 284 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 363 (694)
.+.|++++|...+..+.+.. +.+...+..+...+...|+++.+...+....+.. +.+...+..+...+.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 87799999999999999849-7889999999999998689999999999997619-786699999999998779999999
Q ss_pred HHHHCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9984079---9885079999999972599589999999988869998879999999998154786999999999999199
Q 005487 364 NVFEKMS---KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKL 440 (694)
Q Consensus 364 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 440 (694)
..|+++. ..+...|..+...+...|++++|...|+++.... +.+...+..+...+...|+++.|...++.+....
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
T ss_conf 99999987496539999999999998589999999999999759-8968999999999998468999999999998729-
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 98714999999998825993899999810999---995889999999996499799999999988769998976699999
Q 005487 441 ETNEIVMGALLDMYAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALL 517 (694)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 517 (694)
+.+...+..++.++...|++++|...|+++.. .+...+..+...+...|++++|...+++..... +.+..++..+.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 89789999999999985999999999999985598867999999999998578999999999998529-68789999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 9998009889999999996883099987-57999999986313998999999984999998-989899999999980998
Q 005487 518 SACSHAGWVDEGGYYFNLMISEYNIQPR-NEHYSCLIDLLGRAGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDI 595 (694)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 595 (694)
..+...|++++|...++++.. ..|+ +..+..++..+.+.|++++|...++++.+..| +...+..++..+...|++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 999986889999999999986---49998899999999999869979999999999864944499999999999984899
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999997219999855789999986249958999999999837
Q 005487 596 EMGEKIAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKEL 642 (694)
Q Consensus 596 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 642 (694)
++|...++++++..|++...+..++.++...|++++|...++++.+.
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999998609873999977999999868889999999999861
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=194.51 Aligned_cols=239 Identities=12% Similarity=0.004 Sum_probs=110.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999725995899999999888699988799999999981547869999999999991999871499999999882
Q 005487 377 WNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAK 456 (694)
Q Consensus 377 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (694)
+..+...+...|++++|...++.+.... |+...+..+...+...|+++.|...++.+.... +.+...+..++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHH
T ss_conf 9999999998789999999999998638--648999999999998888999999999986138-6778999999999998
Q ss_pred CCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 5993899999810999---9958899999999964997999999999887699989766999999998009889999999
Q 005487 457 CGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYF 533 (694)
Q Consensus 457 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (694)
.|++++|...++.+.. .+...+..++..+...|++++|...++++.... +.+...+..+...+...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 0779999999999987385028999999999998689999999999999875-467789999999998788999999999
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 996883099987----5799999998631---3998999999984999998-9898999999999809989999999999
Q 005487 534 NLMISEYNIQPR----NEHYSCLIDLLGR---AGRLQEAYGILQSTPEIRE-DAGLLSTLFSACRLHRDIEMGEKIAKLL 605 (694)
Q Consensus 534 ~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 605 (694)
+.+.......+. ...+..++..+.. .|++++|...++++....| +...+..++..+...|++++|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99997612332178999999999999866332588899999999998758555899999999999825799999999999
Q ss_pred HHCCCCCCCCHHHH
Q ss_conf 72199998557899
Q 005487 606 IEKDPDDSSTYIVL 619 (694)
Q Consensus 606 ~~~~p~~~~~~~~l 619 (694)
++.+|+++..+..+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHHCCCCHHHHHHH
T ss_conf 87661468899999
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=193.37 Aligned_cols=189 Identities=14% Similarity=0.069 Sum_probs=81.4
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 28989988607899226889999999975788633789998854417994789998603799993329999999994799
Q 005487 108 TYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMYAKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQ 187 (694)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 187 (694)
.++.++.+|++.|+++.|..+|+.|.+.|+.||..+|+.++.+|.+.+....+ ...+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------------------~~~~~ 85 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------------------SPNPG 85 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------------------SCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH----------------------HHCCH
T ss_conf 99999999985989999999999999818998783999999999857830433----------------------32124
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 34999999998849999994239989999833599068999999999928988535887998965706994799999951
Q 005487 188 AEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQ 267 (694)
Q Consensus 188 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (694)
.+.|.++|++|...|+.||..||+.++.+|++.|+++.|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999980899989999999999984697788999999999728988611104899999988899999999999
Q ss_pred C----CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 8----99991179999999972999027999999988879998888899999995
Q 005487 268 T----VLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSC 318 (694)
Q Consensus 268 ~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 318 (694)
| ..|+..+|+.++.+|++.|+.++|.+++++|.+.|..|+..||..++..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9862999999999999999853898999999999999948996999999999998
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=192.62 Aligned_cols=253 Identities=11% Similarity=0.025 Sum_probs=184.7
Q ss_pred CCCHHHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 5995899999999888-----6999--------88799999999981547869999999999991999871499999999
Q 005487 387 VGDYFKALAIYSDMKE-----VGAK--------PDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDM 453 (694)
Q Consensus 387 ~~~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (694)
.|++++|...++++.. .... .+...+..+...+...|+++.|...++.+...... ...+..++.+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_conf 32299999999999988665422381001148278999999999999878999999999999863864--8999999999
Q ss_pred HHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8825993899999810999---9958899999999964997999999999887699989766999999998009889999
Q 005487 454 YAKCGAVDEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGG 530 (694)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 530 (694)
+...|++++|...++.+.. .+...+..++..+...|++++|...++++.... +.+...+..+...+...|++++|.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9988889999999999861386778999999999998077999999999998738-502899999999999868999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC-------HHHHHHHHHHHHH---CCCHHHHHH
Q ss_conf 999996883099987579999999863139989999999849999989-------8989999999998---099899999
Q 005487 531 YYFNLMISEYNIQPRNEHYSCLIDLLGRAGRLQEAYGILQSTPEIRED-------AGLLSTLFSACRL---HRDIEMGEK 600 (694)
Q Consensus 531 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~~~~~~A~~ 600 (694)
..++.+.... +.+...+..++..+...|++++|...++++....|+ ...+..++..+.. .|++++|..
T Consensus 359 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 359 TLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999875--46778999999999878899999999999997612332178999999999999866332588899999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999721999985578999998624995899999999983799
Q 005487 601 IAKLLIEKDPDDSSTYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 601 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
.++++++..|+++.++..++.++...|++++|...++++.+...
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 99999875855589999999999982579999999999987661
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=192.17 Aligned_cols=445 Identities=8% Similarity=-0.005 Sum_probs=243.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 29999999980699148999999966199999995328989988607899226889999999975788633789998854
Q 005487 72 LWNGLMASYTKNYMYITALELFDMLLQNPYLKPDSYTYPSVLKACGGLGSVGIGKMIHTHLIKTGFLLDVVIASSTAGMY 151 (694)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (694)
.|..+...+.+.|++++|+..|+.+... .+.+..++..+..++...|+++.|...++.+++.. +.+...+..+..++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 9999999999864299999999999863--89984899999999998689999999999998609-86289999999999
Q ss_pred HCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 41799478999860379999332999999999479934999999998849999994239989999833599068999999
Q 005487 152 AKCNSFECAVKMFDEMSERDVASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHK 231 (694)
Q Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 231 (694)
...|++++|...|+.+ ..++......+..+...+....+...++.+.... |+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~----------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG----------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHCCCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC-----------------------
T ss_conf 9838999999999998-6487878588999998778988999999999747--4545-----------------------
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHH---HHHHHHHHHHCC--------CCCHHHHHHHHHHH
Q ss_conf 9999289885358879989657069947999999518999911---799999999729--------99027999999988
Q 005487 232 EFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVV---AWNALIAGYSSR--------GDSKSCVKLFWRMN 300 (694)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~ 300 (694)
....|+. ..+..+....+...+...+......+.. ....+...+... +++++|...++.+.
T Consensus 158 ----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 158 ----SQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp -----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCHH----HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----4345067----57999997447499999876325646178999999987887640206888879999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 87999888889999999522387024679999999934789624899999998832997889999840799885079999
Q 005487 301 EEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVVYWNVM 380 (694)
Q Consensus 301 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 380 (694)
.. .+. +...+..+ ...+..+
T Consensus 230 ~~-----------------------------------~p~-~~~~~~~~------------------------~~~~~~~ 249 (537)
T 3fp2_A 230 SA-----------------------------------NTV-DDPLRENA------------------------ALALCYT 249 (537)
T ss_dssp C-------------------------------------CC-CHHHHHHH------------------------HHHHHHH
T ss_pred HH-----------------------------------CCC-CCHHHHHH------------------------HHHHHHH
T ss_conf 87-----------------------------------877-40445999------------------------9999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99997259958999999998886999887999999999815478699999999999919998714999999998825993
Q 005487 381 ISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAV 460 (694)
Q Consensus 381 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (694)
...+...|++++|...++..... .|+...+..+...+...|+++.|...++.+.... +.+..++..++.++...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 99987545578999999999866--9874699999999998037999999999975459-99879999999999866899
Q ss_pred HHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 899999810999---99588999999999649979999999998876999897669999999980098899999999968
Q 005487 461 DEAFKVFNELPE---RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMI 537 (694)
Q Consensus 461 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 537 (694)
++|...++.+.. .+...+..++..+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999998599977999999999998477999999999998739-9985999999999988378899999999998
Q ss_pred HHCCCCCC----HHHHHHHHHHHHHC----------CCHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 83099987----57999999986313----------9989999999849999989-898999999999809989999999
Q 005487 538 SEYNIQPR----NEHYSCLIDLLGRA----------GRLQEAYGILQSTPEIRED-AGLLSTLFSACRLHRDIEMGEKIA 602 (694)
Q Consensus 538 ~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~ 602 (694)
......+. ...+..++.++... |++++|...++++.+..|+ ...+..++..+...|++++|...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 70976244688899999889999997640100224757999999999999749997899999999999851499999999
Q ss_pred HHHHHCCCCCCCCHH
Q ss_conf 999721999985578
Q 005487 603 KLLIEKDPDDSSTYI 617 (694)
Q Consensus 603 ~~~~~~~p~~~~~~~ 617 (694)
+++++..|.++....
T Consensus 486 ~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 486 EDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHC--CHHHHH
T ss_pred HHHHHHCCCCHHHHH
T ss_conf 999986899388888
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=190.57 Aligned_cols=190 Identities=12% Similarity=0.068 Sum_probs=87.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99899998335990689999999999289885358879989657069947999999518999911799999999729990
Q 005487 210 LTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMYGKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDS 289 (694)
Q Consensus 210 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 289 (694)
++.++..|++.|++++|.+++++|.+.|+.|+..+|+.++.+|+..+....+ ...+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------------------~~~~~l 86 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------------------SPNPGL 86 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------------------SCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH----------------------HHCCHH
T ss_conf 9999999985989999999999999818998783999999999857830433----------------------321249
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 27999999988879998888899999995223870246799999999347896248999999988329978899998407
Q 005487 290 KSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHGYIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKM 369 (694)
Q Consensus 290 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 369 (694)
+.|.++|++|...|+.||..||+.++.+|++.|+++.|..+++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999808999899999999999846977889999999997289886111048999999888999999999999
Q ss_pred C----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 9----988507999999997259958999999998886999887999999999815
Q 005487 370 S----KTDVVYWNVMISGYVTVGDYFKALAIYSDMKEVGAKPDAVTFTSVLPACSQ 421 (694)
Q Consensus 370 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 421 (694)
. .||..+|+.++.+|++.|+.++|.+++++|.+.|..|+..||..++..+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 86299999999999999985389899999999999994899699999999999830
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=179.89 Aligned_cols=429 Identities=13% Similarity=0.046 Sum_probs=288.9
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 32999999999479934999999998849999994239989999833599068999999999928988535887998965
Q 005487 173 ASWNTVISCYYQDGQAEKALELFKKMRGSGFQPNSVTLTTVISSCARLMDLDRGKEIHKEFIKDGFVSDSYISSALVDMY 252 (694)
Q Consensus 173 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 252 (694)
..|..+...+...|++++|+..|+.+.... +.+...+..+..++...|+++.|...++.+.+.. +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 999999999998642999999999998638-9984899999999998689999999999998609-86289999999999
Q ss_pred HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 70699479999995189999117999999997299902799999998887999888889999999522387024679999
Q 005487 253 GKCGCLEMAREVFEQTVLKSVVAWNALIAGYSSRGDSKSCVKLFWRMNEEGIKPTLTTISSVLMSCSRSGQLKHGKVMHG 332 (694)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 332 (694)
...|++++|...|+.+ ..++......+..+...+....+...++.+.... |+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~------------------------ 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR------------------------ 156 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHCCCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC------------------------
T ss_conf 9838999999999998-6487878588999998778988999999999747--454------------------------
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHH---HHHHHHHHHH--------HCCCHHHHHHHHHHHH
Q ss_conf 9999347896248999999988329978899998407998850---7999999997--------2599589999999988
Q 005487 333 YIIRNKIQGDVFINSSLIDLYFKCGRVSSAENVFEKMSKTDVV---YWNVMISGYV--------TVGDYFKALAIYSDMK 401 (694)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~--------~~~~~~~A~~~~~~m~ 401 (694)
.....|+ ...+..+....+...+...+......+.. ....+...+. ..+++++|...++.+.
T Consensus 157 ---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 157 ---GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp -----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCH----HHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---5434506----757999997447499999876325646178999999987887640206888879999999999999
Q ss_pred HCCCCCC--------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-
Q ss_conf 8699988--------7999999999815478699999999999919998714999999998825993899999810999-
Q 005487 402 EVGAKPD--------AVTFTSVLPACSQLAALEKGKEIHNHIIESKLETNEIVMGALLDMYAKCGAVDEAFKVFNELPE- 472 (694)
Q Consensus 402 ~~g~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 472 (694)
... |+ ...+..+...+...|+++.|...++.+...... ...+..++.++...|++++|...++.+..
T Consensus 230 ~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 230 SAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp C----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred HHC--CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 878--7740445999999999999987545578999999999866987--469999999999803799999999997545
Q ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf --995889999999996499799999999988769998976699999999800988999999999688309998757999
Q 005487 473 --RDLVSWTSMIAAYGSHGRALEALKLFGEMQQSNARPDSITFLALLSACSHAGWVDEGGYYFNLMISEYNIQPRNEHYS 550 (694)
Q Consensus 473 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 550 (694)
.+...+..++..+...|++++|...++++.... +.+...+..+...+...|++++|...++.+... .+.+...+.
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 382 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPT 382 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHH
T ss_conf 99987999999999986689999999999999859-997799999999999847799999999999873--999859999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCC-------CHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999986313998999999984999998-------989899999999980----------998999999999972199998
Q 005487 551 CLIDLLGRAGRLQEAYGILQSTPEIRE-------DAGLLSTLFSACRLH----------RDIEMGEKIAKLLIEKDPDDS 613 (694)
Q Consensus 551 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~ 613 (694)
.++.++...|++++|...++++.+..| ....+...+..+... |++++|...++++++..|+++
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999988378899999999998709762446888999998899999976401002247579999999999997499978
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 5578999998624995899999999983799
Q 005487 614 STYIVLSNMYASVKKWDEVRKIRLKMKELGL 644 (694)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 644 (694)
.++..++.+|...|++++|.+.++++.+...
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9999999999985149999999999998689
Done!