Query 005488
Match_columns 694
No_of_seqs 536 out of 3442
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 00:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 7.2E-96 2E-100 849.5 63.1 524 146-691 36-593 (659)
2 KOG0061 Transporter, ABC super 100.0 1.3E-95 3E-100 839.7 52.7 513 147-691 23-546 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 3.4E-90 7.3E-95 800.6 56.1 518 149-691 17-549 (617)
4 PLN03140 ABC transporter G fam 100.0 2.1E-87 4.6E-92 829.3 59.5 513 146-691 864-1404(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 7.9E-87 1.7E-91 826.5 54.2 503 169-691 73-609 (1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 3E-85 6.4E-90 812.5 57.8 510 149-691 759-1293(1394)
7 PLN03140 ABC transporter G fam 100.0 1.4E-85 3.1E-90 813.0 52.7 505 168-691 176-726 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 1.4E-85 3E-90 769.0 39.5 507 150-690 788-1311(1391)
9 KOG0065 Pleiotropic drug resis 100.0 9.2E-77 2E-81 695.0 40.5 505 168-691 126-648 (1391)
10 KOG0058 Peptide exporter, ABC 100.0 8.3E-63 1.8E-67 551.9 9.8 357 9-385 314-691 (716)
11 COG1126 GlnQ ABC-type polar am 100.0 2.2E-53 4.7E-58 416.6 25.0 218 149-384 2-224 (240)
12 KOG0055 Multidrug/pheromone ex 100.0 3.3E-54 7.1E-59 506.5 15.4 361 8-385 196-576 (1228)
13 COG1125 OpuBA ABC-type proline 100.0 3.5E-51 7.7E-56 408.3 25.7 235 149-413 1-241 (309)
14 KOG0055 Multidrug/pheromone ex 100.0 8.9E-53 1.9E-57 494.4 12.4 354 9-385 834-1213(1228)
15 COG2274 SunT ABC-type bacterio 100.0 5.8E-52 1.2E-56 480.4 14.6 358 10-386 320-697 (709)
16 COG1135 AbcC ABC-type metal io 100.0 4.5E-50 9.6E-55 411.5 23.3 222 149-384 1-230 (339)
17 COG1127 Ttg2A ABC-type transpo 100.0 3.2E-49 7E-54 392.8 23.1 221 148-385 7-235 (263)
18 COG1131 CcmA ABC-type multidru 100.0 1.9E-48 4.1E-53 412.5 26.8 222 149-389 4-230 (293)
19 COG1120 FepC ABC-type cobalami 100.0 9.1E-49 2E-53 401.2 22.0 220 149-384 2-227 (258)
20 COG1116 TauB ABC-type nitrate/ 100.0 1.9E-48 4.2E-53 392.2 23.5 204 149-372 3-207 (248)
21 COG3842 PotA ABC-type spermidi 100.0 1.4E-48 3E-53 416.2 22.5 234 148-407 4-240 (352)
22 COG3839 MalK ABC-type sugar tr 100.0 3.3E-48 7.2E-53 411.1 24.6 218 149-385 3-223 (338)
23 COG1136 SalX ABC-type antimicr 100.0 8.2E-48 1.8E-52 387.1 25.7 210 150-374 2-220 (226)
24 COG1132 MdlB ABC-type multidru 100.0 1.5E-49 3.2E-54 458.0 14.5 356 8-385 177-552 (567)
25 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-47 2.4E-52 391.4 24.4 219 148-385 3-227 (254)
26 PRK11174 cysteine/glutathione 100.0 1.2E-48 2.5E-53 452.4 16.1 215 149-385 349-572 (588)
27 TIGR00958 3a01208 Conjugate Tr 100.0 7.3E-49 1.6E-53 462.6 14.5 349 9-385 327-702 (711)
28 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-48 2.8E-53 459.5 15.2 345 10-385 302-673 (686)
29 PTZ00265 multidrug resistance 100.0 9.5E-49 2E-53 487.4 13.5 354 15-385 1015-1452(1466)
30 COG3638 ABC-type phosphate/pho 100.0 2.3E-47 4.9E-52 378.6 20.1 223 149-386 3-238 (258)
31 COG1118 CysA ABC-type sulfate/ 100.0 2.2E-47 4.7E-52 390.7 20.1 220 149-385 2-227 (345)
32 COG2884 FtsE Predicted ATPase 100.0 6.2E-47 1.3E-51 363.5 19.9 213 149-379 1-220 (223)
33 PRK13537 nodulation ABC transp 100.0 5.6E-46 1.2E-50 396.5 28.5 219 148-385 6-227 (306)
34 KOG0057 Mitochondrial Fe/S clu 100.0 2.5E-48 5.5E-53 422.3 10.4 221 148-385 350-574 (591)
35 TIGR03375 type_I_sec_LssB type 100.0 8.7E-48 1.9E-52 453.1 15.8 353 10-386 312-689 (694)
36 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.8E-48 1.7E-52 454.6 15.3 354 10-385 320-700 (710)
37 COG4555 NatA ABC-type Na+ tran 100.0 6E-47 1.3E-51 366.4 18.0 219 149-385 1-222 (245)
38 TIGR02314 ABC_MetN D-methionin 100.0 7.1E-46 1.5E-50 400.1 28.4 221 149-384 1-229 (343)
39 COG1117 PstB ABC-type phosphat 100.0 8.4E-47 1.8E-51 368.7 18.8 234 148-405 6-249 (253)
40 TIGR01193 bacteriocin_ABC ABC- 100.0 9.7E-48 2.1E-52 453.6 14.6 352 9-385 321-697 (708)
41 PRK11176 lipid transporter ATP 100.0 1.2E-47 2.6E-52 443.5 14.3 351 10-385 192-567 (582)
42 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-45 2.7E-50 400.5 28.1 218 149-385 4-224 (353)
43 PRK11650 ugpC glycerol-3-phosp 100.0 1.4E-45 3E-50 400.5 28.2 218 149-384 3-223 (356)
44 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-45 3.3E-50 378.6 26.7 217 150-384 1-225 (235)
45 PRK11432 fbpC ferric transport 100.0 1.8E-45 4E-50 398.6 28.2 217 149-384 6-225 (351)
46 PRK11160 cysteine/glutathione 100.0 2.5E-47 5.4E-52 439.8 14.2 348 10-385 188-562 (574)
47 TIGR03258 PhnT 2-aminoethylpho 100.0 5E-45 1.1E-49 396.5 28.1 218 149-385 5-228 (362)
48 PRK13536 nodulation factor exp 100.0 9.3E-45 2E-49 391.7 29.6 220 148-386 40-262 (340)
49 PRK09452 potA putrescine/sperm 100.0 7.4E-45 1.6E-49 396.6 28.4 218 148-384 13-233 (375)
50 COG1124 DppF ABC-type dipeptid 100.0 2.5E-45 5.5E-50 366.5 22.3 221 149-385 3-231 (252)
51 COG1122 CbiO ABC-type cobalt t 100.0 3.9E-45 8.5E-50 373.5 24.2 218 149-385 3-228 (235)
52 PRK10851 sulfate/thiosulfate t 100.0 9.2E-45 2E-49 393.6 28.4 220 149-384 2-225 (353)
53 TIGR01842 type_I_sec_PrtD type 100.0 1.7E-46 3.8E-51 430.4 15.1 355 11-385 169-542 (544)
54 TIGR01846 type_I_sec_HlyB type 100.0 1.8E-46 3.9E-51 441.8 15.6 351 10-385 305-680 (694)
55 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-44 2.6E-49 368.3 26.0 215 150-383 1-219 (220)
56 TIGR01288 nodI ATP-binding ABC 100.0 1.7E-44 3.7E-49 384.8 28.2 218 149-385 4-224 (303)
57 PRK11607 potG putrescine trans 100.0 2E-44 4.4E-49 393.7 29.4 219 148-385 18-239 (377)
58 KOG0056 Heavy metal exporter H 100.0 3.8E-47 8.2E-52 404.6 7.4 345 17-385 393-761 (790)
59 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-44 2.5E-49 367.3 24.7 208 150-374 2-216 (216)
60 PRK11153 metN DL-methionine tr 100.0 2E-44 4.4E-49 390.2 28.1 221 149-384 1-229 (343)
61 cd03219 ABC_Mj1267_LivG_branch 100.0 1.7E-44 3.7E-49 370.7 26.2 219 150-384 1-231 (236)
62 cd03259 ABC_Carb_Solutes_like 100.0 1.4E-44 3.1E-49 365.8 25.0 210 150-378 1-213 (213)
63 cd03296 ABC_CysA_sulfate_impor 100.0 2.8E-44 6E-49 370.3 27.0 220 149-384 2-225 (239)
64 PRK10789 putative multidrug tr 100.0 3.6E-46 7.8E-51 429.9 14.4 348 10-385 164-538 (569)
65 PRK10790 putative multidrug tr 100.0 4.6E-46 9.9E-51 431.1 15.3 344 10-385 192-563 (592)
66 PRK11000 maltose/maltodextrin 100.0 2.8E-44 6E-49 392.5 28.2 218 149-385 3-223 (369)
67 PRK13643 cbiO cobalt transport 100.0 5.2E-44 1.1E-48 378.4 29.0 238 149-401 1-252 (288)
68 COG3840 ThiQ ABC-type thiamine 100.0 5.1E-45 1.1E-49 347.7 19.1 214 150-384 2-218 (231)
69 cd03218 ABC_YhbG The ABC trans 100.0 3E-44 6.6E-49 367.9 26.2 216 150-384 1-221 (232)
70 cd03258 ABC_MetN_methionine_tr 100.0 3.2E-44 7E-49 368.1 26.2 220 150-384 2-229 (233)
71 cd03269 ABC_putative_ATPase Th 100.0 2.6E-44 5.6E-49 363.1 24.8 210 150-378 1-210 (210)
72 cd03260 ABC_PstB_phosphate_tra 100.0 2E-44 4.3E-49 368.3 24.1 217 150-382 1-226 (227)
73 cd03293 ABC_NrtD_SsuB_transpor 100.0 4E-44 8.6E-49 364.4 26.1 216 150-381 1-219 (220)
74 TIGR02203 MsbA_lipidA lipid A 100.0 6.5E-46 1.4E-50 428.0 14.0 353 11-384 182-555 (571)
75 cd03263 ABC_subfamily_A The AB 100.0 3.9E-44 8.5E-49 364.2 25.3 216 150-383 1-219 (220)
76 PRK13637 cbiO cobalt transport 100.0 9.1E-44 2E-48 376.4 28.7 232 149-395 2-247 (287)
77 cd03266 ABC_NatA_sodium_export 100.0 4.6E-44 1E-48 363.2 25.4 214 150-378 2-218 (218)
78 cd03256 ABC_PhnC_transporter A 100.0 4.2E-44 9.2E-49 368.8 25.0 220 150-384 1-233 (241)
79 PRK11264 putative amino-acid A 100.0 8.3E-44 1.8E-48 368.9 27.1 218 149-384 3-232 (250)
80 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-45 3E-50 426.7 15.2 351 10-385 183-558 (588)
81 cd03301 ABC_MalK_N The N-termi 100.0 6.2E-44 1.3E-48 361.0 25.4 210 150-378 1-213 (213)
82 TIGR03522 GldA_ABC_ATP gliding 100.0 8.5E-44 1.8E-48 379.0 27.6 217 149-385 2-221 (301)
83 PRK09493 glnQ glutamine ABC tr 100.0 1E-43 2.3E-48 366.1 27.1 217 150-384 2-224 (240)
84 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.8E-44 1.9E-48 367.2 26.5 216 150-384 1-224 (242)
85 PRK13634 cbiO cobalt transport 100.0 1.2E-43 2.7E-48 375.9 28.2 231 150-395 3-248 (290)
86 TIGR01188 drrA daunorubicin re 100.0 5.9E-44 1.3E-48 380.5 25.6 207 169-386 5-214 (302)
87 TIGR02315 ABC_phnC phosphonate 100.0 5.3E-44 1.2E-48 368.6 24.5 219 150-383 2-233 (243)
88 cd03224 ABC_TM1139_LivF_branch 100.0 6.2E-44 1.3E-48 363.1 24.6 214 150-384 1-220 (222)
89 TIGR02868 CydC thiol reductant 100.0 9.1E-46 2E-50 423.1 12.2 324 11-355 182-529 (529)
90 PRK09536 btuD corrinoid ABC tr 100.0 8.9E-44 1.9E-48 390.6 27.0 220 149-384 3-227 (402)
91 PRK13631 cbiO cobalt transport 100.0 2.5E-43 5.4E-48 378.0 29.8 233 148-395 20-278 (320)
92 PRK11831 putative ABC transpor 100.0 1.6E-43 3.4E-48 371.2 27.6 218 149-384 7-232 (269)
93 PRK13647 cbiO cobalt transport 100.0 3E-43 6.5E-48 370.0 28.8 217 149-383 4-225 (274)
94 PRK13650 cbiO cobalt transport 100.0 2.9E-43 6.4E-48 371.0 28.1 220 149-385 4-229 (279)
95 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-43 2.5E-48 357.8 23.8 206 150-378 1-208 (208)
96 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.1E-43 2.5E-48 360.3 23.8 209 150-374 1-218 (218)
97 TIGR00972 3a0107s01c2 phosphat 100.0 3.7E-43 7.9E-48 363.7 27.5 216 149-384 1-231 (247)
98 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.7E-43 1E-47 360.4 28.0 216 150-385 2-221 (236)
99 PRK10895 lipopolysaccharide AB 100.0 2.8E-43 6E-48 363.2 26.0 218 149-384 3-225 (241)
100 TIGR01186 proV glycine betaine 100.0 2.4E-43 5.2E-48 382.6 26.4 207 168-385 4-219 (363)
101 PRK10619 histidine/lysine/argi 100.0 5.2E-43 1.1E-47 364.7 27.8 218 149-384 5-240 (257)
102 COG4988 CydD ABC-type transpor 100.0 5.3E-44 1.1E-48 394.2 21.3 216 147-385 318-543 (559)
103 TIGR01192 chvA glucan exporter 100.0 9.8E-45 2.1E-49 419.0 16.3 350 11-385 184-558 (585)
104 cd03234 ABCG_White The White s 100.0 4.7E-43 1E-47 358.1 26.7 221 149-378 3-226 (226)
105 PRK15079 oligopeptide ABC tran 100.0 4.9E-43 1.1E-47 377.2 28.2 228 148-384 7-250 (331)
106 PRK11629 lolD lipoprotein tran 100.0 5.5E-43 1.2E-47 359.2 27.3 216 149-380 5-229 (233)
107 PRK14247 phosphate ABC transpo 100.0 6.3E-43 1.4E-47 362.4 28.0 224 149-384 3-233 (250)
108 COG1137 YhbG ABC-type (unclass 100.0 9.3E-45 2E-49 350.8 13.2 220 149-385 4-228 (243)
109 TIGR02673 FtsE cell division A 100.0 3.1E-43 6.7E-48 356.1 24.9 206 150-373 2-214 (214)
110 PRK13651 cobalt transporter AT 100.0 6.1E-43 1.3E-47 372.7 28.3 221 149-384 2-253 (305)
111 TIGR02204 MsbA_rel ABC transpo 100.0 9.2E-45 2E-49 418.9 15.5 353 9-385 184-563 (576)
112 TIGR01978 sufC FeS assembly AT 100.0 5.3E-43 1.2E-47 361.0 26.7 220 150-383 1-232 (243)
113 PRK11614 livF leucine/isoleuci 100.0 4.1E-43 9E-48 360.9 25.7 215 149-384 5-225 (237)
114 PRK13646 cbiO cobalt transport 100.0 5.2E-43 1.1E-47 370.4 27.1 222 149-385 2-235 (286)
115 PRK11124 artP arginine transpo 100.0 6.7E-43 1.5E-47 360.5 27.1 216 149-383 2-228 (242)
116 TIGR03005 ectoine_ehuA ectoine 100.0 5.6E-43 1.2E-47 363.3 26.7 217 150-384 1-235 (252)
117 PRK14273 phosphate ABC transpo 100.0 7.7E-43 1.7E-47 362.7 27.7 219 148-384 6-237 (254)
118 PRK14268 phosphate ABC transpo 100.0 7.7E-43 1.7E-47 363.7 27.7 222 148-384 11-241 (258)
119 PRK14242 phosphate transporter 100.0 7.5E-43 1.6E-47 362.5 27.5 224 147-384 4-236 (253)
120 cd03264 ABC_drug_resistance_li 100.0 2.9E-43 6.4E-48 355.7 23.8 208 150-378 1-211 (211)
121 PRK13636 cbiO cobalt transport 100.0 7.9E-43 1.7E-47 368.5 28.1 218 149-385 5-231 (283)
122 cd03292 ABC_FtsE_transporter F 100.0 4E-43 8.7E-48 355.1 24.5 207 150-374 1-214 (214)
123 PRK13638 cbiO cobalt transport 100.0 9.3E-43 2E-47 365.7 27.9 217 149-384 1-224 (271)
124 PRK09473 oppD oligopeptide tra 100.0 1.2E-42 2.6E-47 374.2 29.3 227 148-384 11-250 (330)
125 PRK13635 cbiO cobalt transport 100.0 1.2E-42 2.5E-47 366.5 28.5 228 149-394 5-241 (279)
126 PRK13641 cbiO cobalt transport 100.0 9.3E-43 2E-47 368.7 27.7 221 149-384 2-233 (287)
127 PRK11022 dppD dipeptide transp 100.0 1.2E-42 2.6E-47 373.7 28.8 227 149-384 3-242 (326)
128 PRK14267 phosphate ABC transpo 100.0 1.3E-42 2.8E-47 360.7 27.9 224 149-384 4-236 (253)
129 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-42 2.5E-47 358.6 26.9 219 149-384 2-230 (242)
130 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.2E-43 1.1E-47 367.3 24.3 215 151-384 26-249 (269)
131 PRK11248 tauB taurine transpor 100.0 1.2E-42 2.7E-47 361.7 26.8 213 149-381 1-216 (255)
132 PRK13644 cbiO cobalt transport 100.0 1.2E-42 2.5E-47 365.5 26.7 217 149-384 1-223 (274)
133 cd03257 ABC_NikE_OppD_transpor 100.0 1E-42 2.3E-47 355.3 25.6 215 150-378 2-228 (228)
134 cd03262 ABC_HisP_GlnQ_permease 100.0 7.6E-43 1.7E-47 352.8 24.2 207 150-374 1-213 (213)
135 COG4987 CydC ABC-type transpor 100.0 5.8E-44 1.3E-48 388.1 17.1 215 149-385 336-561 (573)
136 PRK14245 phosphate ABC transpo 100.0 1.9E-42 4.2E-47 358.9 27.7 223 148-384 2-233 (250)
137 COG0411 LivG ABC-type branched 100.0 2.2E-43 4.8E-48 352.9 19.8 220 149-384 4-238 (250)
138 PRK11300 livG leucine/isoleuci 100.0 1.5E-42 3.2E-47 360.6 26.8 220 149-384 5-242 (255)
139 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-42 2.4E-47 353.7 25.4 210 150-375 2-220 (221)
140 PRK11308 dppF dipeptide transp 100.0 2E-42 4.4E-47 372.0 28.6 227 149-385 5-244 (327)
141 PRK13548 hmuV hemin importer A 100.0 1.5E-42 3.3E-47 361.6 26.8 217 149-384 2-229 (258)
142 cd03226 ABC_cobalt_CbiO_domain 100.0 5.3E-43 1.2E-47 352.4 22.6 202 151-375 1-205 (205)
143 PRK13649 cbiO cobalt transport 100.0 2.5E-42 5.5E-47 364.0 28.7 221 149-384 2-233 (280)
144 PRK10908 cell division protein 100.0 1.5E-42 3.3E-47 353.3 26.0 208 150-375 2-216 (222)
145 PRK13639 cbiO cobalt transport 100.0 2.7E-42 5.9E-47 363.0 28.6 216 150-384 2-225 (275)
146 PRK13648 cbiO cobalt transport 100.0 3.4E-42 7.3E-47 361.1 29.1 218 149-384 7-230 (269)
147 COG4618 ArpD ABC-type protease 100.0 1.5E-44 3.2E-49 389.4 11.4 360 14-388 190-563 (580)
148 PRK14269 phosphate ABC transpo 100.0 2E-42 4.4E-47 358.0 26.9 223 149-384 2-229 (246)
149 PRK10070 glycine betaine trans 100.0 1.9E-42 4.1E-47 379.8 28.1 225 149-384 4-253 (400)
150 PRK15093 antimicrobial peptide 100.0 2.3E-42 5E-47 372.4 28.3 229 149-384 3-247 (330)
151 PRK10744 pstB phosphate transp 100.0 2.6E-42 5.7E-47 360.1 27.8 224 147-384 11-243 (260)
152 PRK11247 ssuB aliphatic sulfon 100.0 1.4E-42 3.1E-47 361.5 25.6 208 148-381 11-219 (257)
153 PRK11231 fecE iron-dicitrate t 100.0 1.4E-42 2.9E-47 361.2 25.3 220 149-384 2-226 (255)
154 PRK09984 phosphonate/organopho 100.0 2E-42 4.4E-47 361.2 26.6 221 149-383 4-240 (262)
155 TIGR02769 nickel_nikE nickel i 100.0 2.2E-42 4.7E-47 361.7 26.7 226 149-384 2-239 (265)
156 PRK13652 cbiO cobalt transport 100.0 3.1E-42 6.7E-47 362.9 27.8 218 149-385 3-227 (277)
157 PRK14256 phosphate ABC transpo 100.0 3.9E-42 8.4E-47 357.0 28.1 223 149-384 4-235 (252)
158 PRK13640 cbiO cobalt transport 100.0 4.3E-42 9.4E-47 362.7 28.6 220 149-385 5-232 (282)
159 COG0410 LivF ABC-type branched 100.0 1.1E-42 2.3E-47 345.6 22.4 217 149-385 3-226 (237)
160 PRK13632 cbiO cobalt transport 100.0 3E-42 6.5E-47 361.9 27.1 219 148-384 6-230 (271)
161 PRK14235 phosphate transporter 100.0 3.6E-42 7.8E-47 360.5 27.6 223 149-384 19-250 (267)
162 cd03235 ABC_Metallic_Cations A 100.0 7.5E-43 1.6E-47 353.2 21.6 210 151-378 1-213 (213)
163 cd03225 ABC_cobalt_CbiO_domain 100.0 1.3E-42 2.9E-47 350.7 23.3 206 151-373 1-211 (211)
164 TIGR03410 urea_trans_UrtE urea 100.0 1.9E-42 4.1E-47 354.4 24.5 212 150-383 1-219 (230)
165 PRK13633 cobalt transporter AT 100.0 4.6E-42 1E-46 362.1 28.2 222 149-385 4-233 (280)
166 PLN03130 ABC transporter C fam 100.0 6.1E-44 1.3E-48 448.2 16.4 217 148-385 1236-1461(1622)
167 PTZ00265 multidrug resistance 100.0 9.8E-44 2.1E-48 442.6 18.0 347 10-372 224-655 (1466)
168 PRK10575 iron-hydroxamate tran 100.0 2.5E-42 5.4E-47 361.3 25.8 220 149-384 11-236 (265)
169 PRK14274 phosphate ABC transpo 100.0 4.7E-42 1E-46 357.9 27.7 222 149-384 12-242 (259)
170 PRK14237 phosphate transporter 100.0 5.7E-42 1.2E-46 359.0 28.4 224 147-384 18-250 (267)
171 PRK14241 phosphate transporter 100.0 4.6E-42 9.9E-47 357.8 27.4 223 149-384 4-241 (258)
172 TIGR03873 F420-0_ABC_ATP propo 100.0 2.8E-42 6.1E-47 359.0 25.7 219 150-384 2-225 (256)
173 PRK14239 phosphate transporter 100.0 5.3E-42 1.1E-46 355.8 27.6 222 149-384 5-235 (252)
174 TIGR03740 galliderm_ABC gallid 100.0 3.2E-42 7E-47 351.2 25.5 210 150-382 1-210 (223)
175 COG5265 ATM1 ABC-type transpor 100.0 2.4E-44 5.2E-49 380.2 10.0 225 146-386 259-487 (497)
176 PRK10253 iron-enterobactin tra 100.0 2.8E-42 6.1E-47 360.9 25.6 221 148-384 6-232 (265)
177 TIGR00968 3a0106s01 sulfate AB 100.0 4E-42 8.8E-47 353.9 26.3 216 150-384 1-219 (237)
178 COG0444 DppD ABC-type dipeptid 100.0 2.2E-42 4.8E-47 359.4 24.5 226 150-384 2-242 (316)
179 TIGR02857 CydD thiol reductant 100.0 3.6E-44 7.7E-49 410.0 11.6 334 10-369 171-529 (529)
180 PRK14240 phosphate transporter 100.0 7.7E-42 1.7E-46 354.3 27.6 222 149-384 3-233 (250)
181 COG4175 ProV ABC-type proline/ 100.0 8.4E-43 1.8E-47 357.3 20.0 226 148-384 3-253 (386)
182 PLN03232 ABC transporter C fam 100.0 1.2E-43 2.6E-48 445.0 16.6 215 148-385 1233-1458(1495)
183 PRK14250 phosphate ABC transpo 100.0 4.7E-42 1E-46 354.3 25.3 212 149-384 3-220 (241)
184 cd03300 ABC_PotA_N PotA is an 100.0 7.8E-42 1.7E-46 350.6 26.7 216 150-384 1-219 (232)
185 PRK10584 putative ABC transpor 100.0 7E-42 1.5E-46 349.7 26.2 213 149-377 6-227 (228)
186 COG4152 ABC-type uncharacteriz 100.0 9.1E-43 2E-47 346.0 18.8 220 149-387 2-221 (300)
187 PRK14257 phosphate ABC transpo 100.0 9.9E-42 2.1E-46 366.8 28.4 224 148-384 79-312 (329)
188 PRK13642 cbiO cobalt transport 100.0 1.2E-41 2.7E-46 358.3 28.6 219 149-384 4-228 (277)
189 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.5E-42 9.7E-47 347.0 24.1 208 150-378 1-211 (211)
190 PRK13645 cbiO cobalt transport 100.0 8.3E-42 1.8E-46 361.8 27.2 221 149-384 6-239 (289)
191 PRK14244 phosphate ABC transpo 100.0 8.3E-42 1.8E-46 354.3 26.6 223 149-384 5-236 (251)
192 PRK14272 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 353.2 27.7 223 149-384 4-235 (252)
193 PRK14262 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 353.2 27.3 222 149-384 3-233 (250)
194 PRK10771 thiQ thiamine transpo 100.0 7.9E-42 1.7E-46 350.4 25.8 214 150-384 2-218 (232)
195 TIGR03415 ABC_choXWV_ATP choli 100.0 6.7E-42 1.4E-46 373.1 26.7 206 168-384 35-253 (382)
196 PRK14270 phosphate ABC transpo 100.0 1.5E-41 3.4E-46 352.3 27.8 223 148-384 3-234 (251)
197 PRK11144 modC molybdate transp 100.0 7.6E-42 1.6E-46 371.4 26.4 207 150-384 2-217 (352)
198 PRK14259 phosphate ABC transpo 100.0 1E-41 2.3E-46 357.4 26.3 222 148-385 12-253 (269)
199 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-43 5.1E-48 442.9 16.3 215 148-385 1283-1508(1522)
200 cd03299 ABC_ModC_like Archeal 100.0 1.6E-41 3.4E-46 349.1 26.9 215 150-384 1-218 (235)
201 PRK15112 antimicrobial peptide 100.0 1.2E-41 2.6E-46 356.6 26.5 226 149-384 4-238 (267)
202 PRK13549 xylose transporter AT 100.0 5.9E-42 1.3E-46 389.7 26.1 221 149-383 5-230 (506)
203 TIGR02142 modC_ABC molybdenum 100.0 9.7E-42 2.1E-46 370.9 26.4 209 154-385 4-221 (354)
204 PRK14236 phosphate transporter 100.0 2.3E-41 4.9E-46 355.4 28.3 222 149-384 25-255 (272)
205 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-41 3E-46 344.2 25.2 209 150-379 1-212 (213)
206 cd03232 ABC_PDR_domain2 The pl 100.0 1.2E-41 2.6E-46 339.5 24.2 189 149-378 3-192 (192)
207 PRK14248 phosphate ABC transpo 100.0 2.9E-41 6.2E-46 353.8 28.1 222 149-384 21-251 (268)
208 cd03233 ABC_PDR_domain1 The pl 100.0 1.5E-41 3.2E-46 341.5 24.8 195 149-378 3-202 (202)
209 PRK14253 phosphate ABC transpo 100.0 2.1E-41 4.5E-46 350.8 26.7 221 149-383 3-231 (249)
210 PRK14261 phosphate ABC transpo 100.0 2.6E-41 5.7E-46 351.0 27.4 222 149-384 6-236 (253)
211 PRK14251 phosphate ABC transpo 100.0 2.8E-41 6.1E-46 350.3 27.3 222 149-384 4-234 (251)
212 PRK13547 hmuV hemin importer A 100.0 1.4E-41 3E-46 356.9 25.2 220 150-384 2-243 (272)
213 PRK14249 phosphate ABC transpo 100.0 3.5E-41 7.5E-46 349.7 27.6 221 149-384 4-234 (251)
214 cd03252 ABCC_Hemolysin The ABC 100.0 6.5E-42 1.4E-46 351.9 21.4 214 150-385 1-225 (237)
215 PRK11701 phnK phosphonate C-P 100.0 3.3E-41 7.2E-46 351.3 27.0 218 149-384 6-240 (258)
216 PRK14271 phosphate ABC transpo 100.0 3.8E-41 8.3E-46 354.4 27.4 221 149-384 21-250 (276)
217 PRK14238 phosphate transporter 100.0 4.8E-41 1E-45 352.8 27.6 222 149-384 24-254 (271)
218 PRK14255 phosphate ABC transpo 100.0 7.3E-41 1.6E-45 347.4 28.1 222 149-384 5-235 (252)
219 PRK14258 phosphate ABC transpo 100.0 6.3E-41 1.4E-45 350.0 27.7 222 149-384 7-244 (261)
220 PRK14260 phosphate ABC transpo 100.0 5E-41 1.1E-45 350.2 26.8 222 149-384 7-242 (259)
221 PRK14275 phosphate ABC transpo 100.0 5.9E-41 1.3E-45 354.7 27.6 223 148-384 38-269 (286)
222 cd03297 ABC_ModC_molybdenum_tr 100.0 3.3E-41 7E-46 341.6 24.5 203 151-378 3-214 (214)
223 PTZ00243 ABC transporter; Prov 100.0 7.2E-43 1.6E-47 437.9 15.1 215 148-385 1307-1533(1560)
224 PRK10762 D-ribose transporter 100.0 2.1E-41 4.6E-46 384.7 25.8 219 149-383 4-228 (501)
225 CHL00131 ycf16 sulfate ABC tra 100.0 9.7E-41 2.1E-45 346.3 28.4 221 149-383 7-239 (252)
226 PRK09700 D-allose transporter 100.0 2.9E-41 6.3E-46 384.4 26.4 219 149-383 5-232 (510)
227 cd03267 ABC_NatA_like Similar 100.0 3.7E-41 8.1E-46 346.6 24.3 200 168-378 32-236 (236)
228 COG4559 ABC-type hemin transpo 100.0 1.5E-41 3.3E-46 331.3 20.0 218 149-384 1-229 (259)
229 PRK14266 phosphate ABC transpo 100.0 8.3E-41 1.8E-45 346.5 26.8 222 149-384 3-233 (250)
230 PRK15439 autoinducer 2 ABC tra 100.0 5.1E-41 1.1E-45 382.2 27.2 214 148-384 10-228 (510)
231 PRK14265 phosphate ABC transpo 100.0 1.4E-40 3E-45 349.8 28.2 221 148-384 19-257 (274)
232 COG1123 ATPase components of v 100.0 5.5E-41 1.2E-45 371.8 26.3 228 149-386 5-245 (539)
233 PRK10418 nikD nickel transport 100.0 9.2E-41 2E-45 347.3 26.4 219 148-384 3-229 (254)
234 PRK14254 phosphate ABC transpo 100.0 1.8E-40 3.8E-45 350.9 28.9 221 148-384 38-268 (285)
235 cd03213 ABCG_EPDR ABCG transpo 100.0 8.1E-41 1.8E-45 334.1 24.7 191 149-378 3-194 (194)
236 TIGR02982 heterocyst_DevA ABC 100.0 8.4E-41 1.8E-45 340.1 25.2 210 150-374 2-219 (220)
237 PRK10419 nikE nickel transport 100.0 8.7E-41 1.9E-45 350.3 25.8 226 149-384 3-240 (268)
238 PRK14263 phosphate ABC transpo 100.0 1.4E-40 3.1E-45 347.3 27.3 222 147-384 6-244 (261)
239 TIGR03608 L_ocin_972_ABC putat 100.0 5.3E-41 1.2E-45 337.6 23.2 198 152-369 1-206 (206)
240 PRK14243 phosphate transporter 100.0 1.3E-40 2.9E-45 348.1 26.4 220 149-384 10-247 (264)
241 cd03251 ABCC_MsbA MsbA is an e 100.0 2.9E-41 6.2E-46 346.4 21.0 215 150-386 1-226 (234)
242 PRK09580 sufC cysteine desulfu 100.0 1.9E-40 4.1E-45 343.2 27.3 229 150-392 2-241 (248)
243 COG1123 ATPase components of v 100.0 6.9E-41 1.5E-45 371.0 24.9 228 148-384 279-518 (539)
244 TIGR01184 ntrCD nitrate transp 100.0 5.9E-41 1.3E-45 343.8 22.6 201 173-383 1-202 (230)
245 COG4525 TauB ABC-type taurine 100.0 5.4E-41 1.2E-45 323.2 20.7 217 149-383 3-222 (259)
246 TIGR02323 CP_lyasePhnK phospho 100.0 2.1E-40 4.4E-45 344.2 26.5 218 149-384 3-237 (253)
247 cd03289 ABCC_CFTR2 The CFTR su 100.0 7E-41 1.5E-45 351.7 23.2 213 149-385 2-225 (275)
248 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.2E-41 9.1E-46 346.1 20.8 218 150-386 1-227 (238)
249 cd03254 ABCC_Glucan_exporter_l 100.0 5E-41 1.1E-45 343.5 21.1 214 149-385 2-226 (229)
250 PRK10247 putative ABC transpor 100.0 1E-40 2.2E-45 340.9 22.9 210 149-381 7-223 (225)
251 TIGR02633 xylG D-xylose ABC tr 100.0 1.6E-40 3.4E-45 377.5 26.7 219 150-382 2-227 (500)
252 PRK14264 phosphate ABC transpo 100.0 3.6E-40 7.7E-45 351.8 27.5 225 148-384 44-288 (305)
253 PRK15056 manganese/iron transp 100.0 2.5E-40 5.3E-45 347.6 25.2 219 149-383 6-228 (272)
254 PRK11288 araG L-arabinose tran 100.0 2.6E-40 5.6E-45 375.8 27.2 216 149-380 4-224 (501)
255 PRK14246 phosphate ABC transpo 100.0 4.3E-40 9.3E-45 343.0 26.6 221 149-384 10-240 (257)
256 PRK14252 phosphate ABC transpo 100.0 7.1E-40 1.5E-44 342.7 28.3 222 148-384 15-248 (265)
257 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-40 2.6E-45 338.6 21.7 209 149-378 2-220 (220)
258 PRK10982 galactose/methyl gala 100.0 1.9E-40 4.1E-45 376.1 25.2 216 152-383 1-221 (491)
259 TIGR02770 nickel_nikD nickel i 100.0 2.9E-40 6.4E-45 338.5 24.2 206 172-384 1-214 (230)
260 PRK10261 glutathione transport 100.0 4.1E-40 8.8E-45 382.7 28.1 227 148-384 312-552 (623)
261 TIGR03269 met_CoM_red_A2 methy 100.0 4.1E-40 8.9E-45 375.8 27.3 221 150-387 1-260 (520)
262 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.3E-40 7.1E-45 331.3 23.2 190 150-388 1-196 (200)
263 COG4598 HisP ABC-type histidin 100.0 3E-41 6.6E-46 320.8 14.5 218 149-384 6-240 (256)
264 PRK03695 vitamin B12-transport 100.0 3.3E-40 7.1E-45 342.1 23.5 200 172-384 11-221 (248)
265 PRK13538 cytochrome c biogenes 100.0 6.3E-40 1.4E-44 330.0 24.1 199 149-369 1-202 (204)
266 cd03230 ABC_DR_subfamily_A Thi 100.0 3.5E-40 7.7E-45 323.5 21.8 170 150-374 1-173 (173)
267 cd03253 ABCC_ATM1_transporter 100.0 2.4E-40 5.3E-45 339.9 21.5 214 150-384 1-223 (236)
268 PRK10261 glutathione transport 100.0 5E-40 1.1E-44 382.0 26.5 225 149-384 12-257 (623)
269 COG4181 Predicted ABC-type tra 100.0 1.2E-40 2.6E-45 314.7 17.2 212 149-376 6-226 (228)
270 TIGR01271 CFTR_protein cystic 100.0 5.3E-41 1.1E-45 420.7 18.9 214 148-385 1216-1440(1490)
271 PRK15134 microcin C ABC transp 100.0 4.9E-40 1.1E-44 375.9 25.3 227 148-384 274-514 (529)
272 PRK13543 cytochrome c biogenes 100.0 1.1E-39 2.5E-44 330.6 24.3 202 148-371 10-212 (214)
273 cd03231 ABC_CcmA_heme_exporter 100.0 1E-39 2.2E-44 327.9 23.2 195 150-369 1-198 (201)
274 TIGR01257 rim_protein retinal- 100.0 1E-39 2.2E-44 407.6 28.6 224 148-388 1936-2162(2272)
275 PRK15134 microcin C ABC transp 100.0 1.5E-39 3.3E-44 371.8 27.7 224 149-384 5-245 (529)
276 PRK13549 xylose transporter AT 100.0 5.9E-40 1.3E-44 373.3 23.9 223 149-383 259-492 (506)
277 cd03244 ABCC_MRP_domain2 Domai 100.0 7E-40 1.5E-44 333.2 21.7 208 149-379 2-220 (221)
278 TIGR03269 met_CoM_red_A2 methy 100.0 1.9E-39 4.1E-44 370.4 26.9 223 148-385 278-517 (520)
279 cd03229 ABC_Class3 This class 100.0 1E-39 2.2E-44 321.7 20.5 171 150-373 1-178 (178)
280 TIGR01257 rim_protein retinal- 100.0 2.9E-39 6.3E-44 403.5 29.6 223 148-388 927-1152(2272)
281 COG1129 MglA ABC-type sugar tr 100.0 2E-39 4.3E-44 357.2 24.9 216 148-379 7-228 (500)
282 PRK09544 znuC high-affinity zi 100.0 2.1E-39 4.5E-44 336.6 23.6 202 149-384 4-208 (251)
283 TIGR01189 ccmA heme ABC export 100.0 2.7E-39 5.9E-44 323.8 23.1 194 150-368 1-197 (198)
284 COG4604 CeuD ABC-type enteroch 100.0 8.7E-41 1.9E-45 322.4 11.7 220 149-385 1-225 (252)
285 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.6E-39 3.6E-44 331.8 21.9 202 150-378 23-224 (224)
286 PRK13540 cytochrome c biogenes 100.0 2.4E-39 5.3E-44 324.8 22.5 193 150-367 2-197 (200)
287 cd03247 ABCC_cytochrome_bd The 100.0 1.7E-39 3.7E-44 320.0 20.8 175 150-378 1-178 (178)
288 cd03248 ABCC_TAP TAP, the Tran 100.0 8.2E-40 1.8E-44 334.0 19.0 211 148-374 10-226 (226)
289 PRK13546 teichoic acids export 100.0 1.7E-38 3.6E-43 332.1 28.8 218 148-385 3-232 (264)
290 cd03246 ABCC_Protease_Secretio 100.0 2E-39 4.3E-44 318.2 20.5 169 150-374 1-173 (173)
291 cd03288 ABCC_SUR2 The SUR doma 100.0 2.4E-39 5.2E-44 337.3 22.2 217 148-385 18-243 (257)
292 cd03215 ABC_Carb_Monos_II This 100.0 3.4E-39 7.3E-44 319.1 21.2 171 149-374 4-182 (182)
293 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.6E-40 5.7E-45 380.0 15.3 210 148-377 336-551 (555)
294 TIGR02324 CP_lyasePhnL phospho 100.0 6.5E-39 1.4E-43 326.9 23.7 208 150-370 2-223 (224)
295 COG4172 ABC-type uncharacteriz 100.0 7.5E-39 1.6E-43 336.4 24.6 230 146-384 273-515 (534)
296 PRK09700 D-allose transporter 100.0 3E-39 6.5E-44 367.9 23.5 215 148-380 264-493 (510)
297 PRK13539 cytochrome c biogenes 100.0 8E-39 1.7E-43 322.8 23.9 198 149-371 2-200 (207)
298 TIGR02633 xylG D-xylose ABC tr 100.0 3.4E-39 7.3E-44 366.6 23.4 221 149-381 257-488 (500)
299 COG4161 ArtP ABC-type arginine 100.0 2.1E-39 4.5E-44 303.4 17.7 216 149-382 2-227 (242)
300 PRK10938 putative molybdenum t 100.0 3.1E-39 6.8E-44 366.0 23.0 209 149-384 3-223 (490)
301 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.1E-39 1.5E-43 322.9 22.9 198 149-380 6-207 (207)
302 TIGR01166 cbiO cobalt transpor 100.0 1.6E-38 3.4E-43 316.2 21.8 177 169-356 4-188 (190)
303 PRK13545 tagH teichoic acids e 100.0 5.4E-38 1.2E-42 349.3 27.8 214 149-387 21-234 (549)
304 PRK10522 multidrug transporter 100.0 1.5E-38 3.2E-43 365.1 23.6 203 148-377 321-530 (547)
305 PRK10762 D-ribose transporter 100.0 2E-38 4.2E-43 360.4 23.4 214 149-383 257-482 (501)
306 TIGR03771 anch_rpt_ABC anchore 100.0 2.8E-38 6E-43 322.6 21.6 197 178-384 1-200 (223)
307 cd03214 ABC_Iron-Siderophores_ 100.0 1.4E-38 3E-43 314.2 18.7 175 151-378 1-180 (180)
308 PRK11288 araG L-arabinose tran 100.0 1.7E-38 3.8E-43 360.8 22.1 215 149-383 257-483 (501)
309 PLN03232 ABC transporter C fam 100.0 9.4E-40 2E-44 409.9 12.5 336 12-385 469-828 (1495)
310 cd03250 ABCC_MRP_domain1 Domai 100.0 3.5E-38 7.7E-43 317.1 20.5 194 150-373 1-204 (204)
311 COG4148 ModC ABC-type molybdat 100.0 5.5E-39 1.2E-43 324.2 14.1 195 174-385 15-218 (352)
312 COG0396 sufC Cysteine desulfur 100.0 2.2E-37 4.7E-42 306.4 25.1 231 149-394 3-242 (251)
313 COG4619 ABC-type uncharacteriz 100.0 1.5E-39 3.3E-44 306.4 9.1 204 150-374 4-212 (223)
314 COG3845 ABC-type uncharacteriz 100.0 7E-38 1.5E-42 338.6 23.0 215 149-379 4-223 (501)
315 PRK13541 cytochrome c biogenes 100.0 1.1E-37 2.4E-42 311.5 22.6 192 150-367 2-193 (195)
316 cd03290 ABCC_SUR1_N The SUR do 100.0 1E-37 2.2E-42 316.9 22.1 200 151-373 2-218 (218)
317 cd03228 ABCC_MRP_Like The MRP 100.0 6.7E-38 1.5E-42 306.8 19.9 167 150-373 1-171 (171)
318 PRK15439 autoinducer 2 ABC tra 100.0 7E-38 1.5E-42 356.5 23.2 215 148-383 267-490 (510)
319 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-37 2.8E-42 302.6 21.6 157 150-376 1-162 (163)
320 PLN03130 ABC transporter C fam 100.0 4E-39 8.7E-44 404.9 13.6 206 149-385 614-828 (1622)
321 TIGR01187 potA spermidine/putr 100.0 1.1E-37 2.4E-42 335.3 22.8 187 188-385 1-190 (325)
322 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.3E-37 9.4E-42 324.1 26.1 204 146-385 36-247 (282)
323 PRK10535 macrolide transporter 100.0 3.3E-37 7.1E-42 359.7 27.2 220 149-384 4-231 (648)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 2.9E-37 6.2E-42 301.1 21.0 163 150-372 1-163 (166)
325 PRK15064 ABC transporter ATP-b 100.0 2.9E-37 6.3E-42 353.1 24.0 211 150-385 2-242 (530)
326 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-38 2.5E-43 372.4 12.0 338 8-371 264-653 (659)
327 PRK11819 putative ABC transpor 100.0 9.3E-37 2E-41 350.7 26.3 211 148-384 5-249 (556)
328 PRK10938 putative molybdenum t 100.0 7.3E-37 1.6E-41 346.7 22.4 215 148-378 259-485 (490)
329 PRK10982 galactose/methyl gala 100.0 7E-37 1.5E-41 346.9 22.3 215 148-380 249-475 (491)
330 COG4608 AppF ABC-type oligopep 100.0 1.3E-36 2.9E-41 310.1 20.5 194 149-385 4-199 (268)
331 COG1119 ModF ABC-type molybden 100.0 6.4E-37 1.4E-41 306.5 17.7 216 148-379 30-256 (257)
332 PRK15064 ABC transporter ATP-b 100.0 1.6E-36 3.5E-41 347.0 23.4 204 148-385 318-525 (530)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-36 4.2E-41 347.8 23.9 211 149-385 4-248 (552)
334 PRK15177 Vi polysaccharide exp 100.0 2.8E-36 6.1E-41 305.7 22.3 196 171-390 1-197 (213)
335 COG4172 ABC-type uncharacteriz 100.0 2.3E-36 5E-41 317.8 21.6 227 149-384 6-246 (534)
336 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.6E-36 1.2E-40 310.0 22.2 190 171-383 8-205 (246)
337 KOG0054 Multidrug resistance-a 100.0 8.6E-37 1.9E-41 367.4 15.9 336 24-385 999-1362(1381)
338 PRK11819 putative ABC transpor 100.0 1.7E-35 3.8E-40 340.1 24.6 205 148-383 323-531 (556)
339 COG4674 Uncharacterized ABC-ty 100.0 7E-36 1.5E-40 288.0 15.8 220 148-384 4-234 (249)
340 COG4586 ABC-type uncharacteriz 100.0 6.2E-36 1.4E-40 301.7 16.1 208 170-388 37-249 (325)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.3E-35 9.4E-40 336.7 25.2 204 148-382 321-528 (552)
342 PRK13409 putative ATPase RIL; 100.0 5.7E-35 1.2E-39 336.3 23.7 197 148-379 339-536 (590)
343 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.7E-35 5.9E-40 306.3 18.7 199 154-378 5-220 (255)
344 PRK10636 putative ABC transpor 100.0 9.6E-35 2.1E-39 338.3 24.6 203 148-385 311-517 (638)
345 TIGR00957 MRP_assoc_pro multi 100.0 7.2E-35 1.6E-39 366.5 23.2 209 149-385 636-850 (1522)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-34 3.6E-39 275.2 19.0 144 150-373 1-144 (144)
347 COG1101 PhnK ABC-type uncharac 100.0 6.7E-35 1.5E-39 285.4 16.5 218 150-378 2-231 (263)
348 COG4136 ABC-type uncharacteriz 100.0 8.3E-35 1.8E-39 269.7 15.4 191 149-356 2-196 (213)
349 PRK11147 ABC transporter ATPas 100.0 4E-34 8.7E-39 333.5 24.3 205 148-383 318-526 (635)
350 COG1134 TagH ABC-type polysacc 100.0 1.6E-33 3.4E-38 282.5 23.9 223 149-391 3-242 (249)
351 PLN03073 ABC transporter F fam 100.0 9.4E-34 2E-38 331.9 25.7 207 148-386 507-715 (718)
352 cd03238 ABC_UvrA The excision 100.0 4.9E-34 1.1E-38 280.5 19.6 158 168-374 6-166 (176)
353 PRK10636 putative ABC transpor 100.0 6.6E-34 1.4E-38 331.3 23.1 208 149-383 1-234 (638)
354 cd03222 ABC_RNaseL_inhibitor T 100.0 5.1E-34 1.1E-38 280.6 18.5 152 153-380 4-158 (177)
355 TIGR01271 CFTR_protein cystic 100.0 1.4E-33 3.1E-38 353.9 25.1 197 170-385 439-636 (1490)
356 COG4167 SapF ABC-type antimicr 100.0 8.5E-34 1.8E-38 270.7 17.4 227 149-385 4-239 (267)
357 PRK11147 ABC transporter ATPas 100.0 3E-33 6.6E-38 326.1 23.9 206 149-383 3-241 (635)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5E-33 1.1E-37 268.3 19.7 152 152-373 2-157 (157)
359 KOG0059 Lipid exporter ABCA1 a 100.0 2.3E-33 5E-38 336.4 20.0 224 148-389 563-791 (885)
360 KOG0054 Multidrug resistance-a 100.0 6.9E-33 1.5E-37 333.8 23.7 210 148-384 517-730 (1381)
361 PRK13409 putative ATPase RIL; 100.0 9.9E-33 2.2E-37 317.7 18.8 188 155-372 79-287 (590)
362 PTZ00243 ABC transporter; Prov 100.0 2.8E-32 6.1E-37 342.7 21.7 199 169-385 672-870 (1560)
363 COG4107 PhnK ABC-type phosphon 100.0 2.3E-32 5E-37 259.0 14.1 214 149-384 6-240 (258)
364 COG0488 Uup ATPase components 100.0 1.5E-31 3.3E-36 301.5 20.3 207 149-382 3-237 (530)
365 PLN03073 ABC transporter F fam 100.0 9.5E-32 2.1E-36 315.1 18.4 215 147-383 175-429 (718)
366 COG4133 CcmA ABC-type transpor 100.0 1.9E-31 4.2E-36 256.8 15.3 187 150-357 3-192 (209)
367 cd03270 ABC_UvrA_I The excisio 100.0 4.7E-30 1E-34 262.5 20.0 191 168-378 6-226 (226)
368 PF00005 ABC_tran: ABC transpo 100.0 2.1E-30 4.5E-35 243.5 13.2 133 173-324 1-137 (137)
369 cd03271 ABC_UvrA_II The excisi 100.0 1.4E-29 3E-34 263.3 19.2 196 169-380 7-261 (261)
370 COG4778 PhnL ABC-type phosphon 100.0 8.4E-30 1.8E-34 240.9 14.0 213 148-371 3-227 (235)
371 COG0488 Uup ATPase components 100.0 1.8E-28 4E-33 276.5 21.2 205 147-385 319-525 (530)
372 COG1129 MglA ABC-type sugar tr 100.0 6E-28 1.3E-32 266.5 22.0 214 147-380 261-485 (500)
373 COG4138 BtuD ABC-type cobalami 100.0 2.6E-29 5.6E-34 238.6 6.4 207 149-384 3-220 (248)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 2.6E-28 5.7E-33 244.6 12.5 165 174-371 14-190 (197)
375 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.4E-28 7.5E-33 246.4 2.2 179 168-371 15-204 (212)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.2E-26 4.8E-31 237.4 15.1 186 168-370 13-234 (243)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-26 2.2E-31 241.6 10.6 182 183-370 25-242 (251)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.1E-25 2.3E-30 228.3 15.2 192 149-373 5-210 (213)
379 PRK00635 excinuclease ABC subu 99.9 4.3E-25 9.3E-30 273.1 23.5 138 240-385 759-906 (1809)
380 COG4615 PvdE ABC-type sideroph 99.9 2.1E-26 4.5E-31 242.1 9.2 204 149-378 322-530 (546)
381 COG4178 ABC-type uncharacteriz 99.9 2.1E-25 4.5E-30 250.8 16.9 197 147-370 390-587 (604)
382 COG3845 ABC-type uncharacteriz 99.9 1.7E-24 3.8E-29 234.9 22.2 222 147-382 255-489 (501)
383 cd03240 ABC_Rad50 The catalyti 99.9 1.7E-25 3.6E-30 225.5 13.0 164 176-371 16-197 (204)
384 PRK00349 uvrA excinuclease ABC 99.9 3.6E-24 7.8E-29 255.3 23.8 126 244-385 792-927 (943)
385 COG4170 SapD ABC-type antimicr 99.9 1E-24 2.2E-29 212.6 10.5 229 150-385 4-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 1.1E-23 2.3E-28 250.8 21.5 125 243-383 789-923 (924)
387 KOG0927 Predicted transporter 99.9 2.2E-24 4.7E-29 235.0 11.1 204 147-382 387-593 (614)
388 KOG0927 Predicted transporter 99.9 9.8E-24 2.1E-28 229.9 14.1 214 148-384 74-308 (614)
389 KOG0060 Long-chain acyl-CoA tr 99.9 3.1E-22 6.7E-27 219.7 18.0 204 148-371 432-641 (659)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.9E-22 4.1E-27 202.4 14.9 167 173-373 12-192 (198)
391 COG1245 Predicted ATPase, RNas 99.9 9.3E-22 2E-26 210.5 15.9 173 173-370 357-530 (591)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.5E-22 5.4E-27 208.3 11.3 177 184-371 23-233 (247)
393 KOG0066 eIF2-interacting prote 99.9 2.1E-21 4.5E-26 205.9 13.8 192 146-371 583-776 (807)
394 KOG2355 Predicted ABC-type tra 99.9 8.3E-21 1.8E-25 185.0 15.7 209 148-384 12-236 (291)
395 KOG0062 ATPase component of AB 99.9 1E-21 2.2E-26 213.2 10.1 202 148-383 79-283 (582)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.8 4E-20 8.8E-25 187.6 15.7 81 292-373 123-211 (213)
397 KOG0062 ATPase component of AB 99.8 2.9E-20 6.3E-25 202.0 14.3 205 146-380 359-564 (582)
398 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.6E-20 9.9E-25 185.3 12.5 153 172-378 16-172 (200)
399 cd03239 ABC_SMC_head The struc 99.8 3.2E-19 7E-24 176.0 14.8 74 296-371 95-172 (178)
400 COG1245 Predicted ATPase, RNas 99.8 6.7E-20 1.5E-24 196.4 8.3 170 179-371 96-288 (591)
401 cd03283 ABC_MutS-like MutS-lik 99.8 2.4E-19 5.2E-24 180.0 9.7 136 169-356 13-149 (199)
402 PRK00635 excinuclease ABC subu 99.8 2.4E-18 5.1E-23 213.8 18.8 199 172-385 1505-1796(1809)
403 KOG0064 Peroxisomal long-chain 99.8 6.6E-19 1.4E-23 191.2 11.2 188 149-362 481-674 (728)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.8 4.1E-19 8.8E-24 181.3 8.8 153 169-379 16-175 (222)
405 COG0178 UvrA Excinuclease ATPa 99.8 1.1E-17 2.3E-22 190.1 20.8 128 243-385 783-919 (935)
406 COG2401 ABC-type ATPase fused 99.8 1.9E-18 4.1E-23 183.3 12.6 205 149-375 357-588 (593)
407 cd03241 ABC_RecN RecN ATPase i 99.8 3.6E-18 7.8E-23 180.1 14.9 76 295-373 170-249 (276)
408 cd03227 ABC_Class2 ABC-type Cl 99.7 1E-17 2.2E-22 162.8 12.8 75 295-371 77-155 (162)
409 PRK00349 uvrA excinuclease ABC 99.7 2.1E-17 4.6E-22 197.7 15.9 135 243-385 436-585 (943)
410 TIGR00630 uvra excinuclease AB 99.7 3.4E-17 7.3E-22 195.6 16.2 134 243-384 434-582 (924)
411 cd03242 ABC_RecF RecF is a rec 99.7 2.9E-16 6.4E-21 165.0 16.8 77 293-374 181-269 (270)
412 cd03243 ABC_MutS_homologs The 99.7 1.4E-16 2.9E-21 160.4 11.7 154 176-382 22-176 (202)
413 PF01061 ABC2_membrane: ABC-2 99.7 4.1E-18 8.8E-23 169.6 -1.1 197 491-691 1-207 (210)
414 KOG0066 eIF2-interacting prote 99.7 2.2E-17 4.8E-22 175.5 3.7 214 148-380 263-494 (807)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.6 5.6E-16 1.2E-20 156.2 8.8 136 169-356 15-152 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.5E-15 3.2E-20 154.5 10.8 158 169-384 17-180 (216)
417 TIGR02858 spore_III_AA stage I 99.6 8.9E-15 1.9E-19 153.2 11.2 139 184-383 112-267 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.5 3.4E-14 7.4E-19 151.7 12.3 178 169-370 348-531 (592)
419 PRK00064 recF recombination pr 99.5 1.9E-12 4.1E-17 141.7 19.3 77 294-374 272-359 (361)
420 cd00820 PEPCK_HprK Phosphoenol 99.4 1.3E-13 2.9E-18 124.0 6.5 72 170-252 2-77 (107)
421 smart00534 MUTSac ATPase domai 99.4 7E-14 1.5E-18 138.8 4.2 78 294-376 60-141 (185)
422 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.6E-13 3.5E-18 139.5 5.4 73 295-370 136-212 (220)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 2E-12 4.3E-17 131.4 12.0 132 171-356 17-155 (213)
424 TIGR01069 mutS2 MutS2 family p 99.4 6.6E-13 1.4E-17 157.3 8.8 131 175-356 313-446 (771)
425 cd01128 rho_factor Transcripti 99.4 2.2E-12 4.7E-17 133.8 10.4 174 178-374 11-211 (249)
426 PTZ00132 GTP-binding nuclear p 99.3 1.8E-12 3.9E-17 131.3 7.6 44 300-343 157-205 (215)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.8E-11 4E-16 124.9 12.6 135 169-356 17-155 (222)
428 KOG0063 RNAse L inhibitor, ABC 99.3 4E-12 8.8E-17 136.1 7.2 185 181-387 98-309 (592)
429 TIGR00634 recN DNA repair prot 99.2 1.2E-11 2.7E-16 142.9 9.2 77 294-373 439-519 (563)
430 PRK07721 fliI flagellum-specif 99.2 6.2E-11 1.3E-15 132.0 14.1 174 169-382 145-340 (438)
431 PHA02562 46 endonuclease subun 99.2 2E-11 4.4E-16 141.1 9.0 79 292-374 465-555 (562)
432 PRK10869 recombination and rep 99.2 3.1E-11 6.6E-16 138.8 10.0 76 295-373 430-509 (553)
433 TIGR00618 sbcc exonuclease Sbc 99.2 3.8E-11 8.2E-16 148.2 11.0 81 291-372 946-1036(1042)
434 PRK00409 recombination and DNA 99.2 2.1E-11 4.6E-16 145.0 7.5 81 294-377 389-470 (782)
435 COG0178 UvrA Excinuclease ATPa 99.2 3.4E-10 7.4E-15 129.8 14.9 138 241-385 426-577 (935)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.1 1.3E-10 2.9E-15 118.3 8.6 135 169-356 16-154 (218)
437 PRK08533 flagellar accessory p 99.1 6.8E-10 1.5E-14 114.2 13.4 150 179-370 20-184 (230)
438 PF13304 AAA_21: AAA domain; P 99.1 1E-10 2.2E-15 118.1 6.3 63 294-356 235-300 (303)
439 PRK13695 putative NTPase; Prov 99.1 5.3E-11 1.1E-15 116.9 4.1 79 294-378 77-157 (174)
440 cd01124 KaiC KaiC is a circadi 99.1 1E-09 2.3E-14 108.1 13.2 79 292-370 68-163 (187)
441 PRK03918 chromosome segregatio 99.0 4.8E-10 1.1E-14 136.4 10.0 78 292-371 785-868 (880)
442 TIGR00606 rad50 rad50. This fa 99.0 5.6E-10 1.2E-14 140.7 9.5 107 244-362 1156-1276(1311)
443 PRK10246 exonuclease subunit S 99.0 1.1E-09 2.3E-14 135.1 11.0 80 291-371 945-1032(1047)
444 PRK13830 conjugal transfer pro 99.0 6.5E-09 1.4E-13 125.0 17.3 78 311-392 650-736 (818)
445 COG3910 Predicted ATPase [Gene 99.0 7E-09 1.5E-13 101.0 13.9 82 289-373 123-205 (233)
446 TIGR02788 VirB11 P-type DNA tr 99.0 1.1E-09 2.3E-14 117.6 8.8 143 176-384 137-280 (308)
447 cd01120 RecA-like_NTPases RecA 99.0 2.3E-09 4.9E-14 102.1 9.7 63 296-358 68-140 (165)
448 PRK06793 fliI flagellum-specif 99.0 3.1E-09 6.7E-14 117.7 11.4 170 149-380 130-306 (432)
449 PRK01156 chromosome segregatio 98.9 3.3E-09 7.1E-14 129.4 10.5 77 292-370 798-883 (895)
450 cd01131 PilT Pilus retraction 98.9 6.3E-09 1.4E-13 104.6 10.4 57 305-370 66-122 (198)
451 TIGR02168 SMC_prok_B chromosom 98.8 3.7E-09 8.1E-14 131.9 7.4 76 292-370 1086-1165(1179)
452 PRK06067 flagellar accessory p 98.8 2.8E-08 6.1E-13 102.2 12.6 163 171-370 12-186 (234)
453 TIGR01247 drrB daunorubicin re 98.8 4.8E-07 1E-11 93.0 19.1 186 499-690 1-202 (236)
454 PRK02224 chromosome segregatio 98.7 2.2E-08 4.8E-13 122.0 9.3 78 293-372 779-869 (880)
455 cd01125 repA Hexameric Replica 98.7 6.5E-08 1.4E-12 99.9 11.4 136 183-356 1-160 (239)
456 PRK06995 flhF flagellar biosyn 98.7 3.6E-08 7.9E-13 110.8 10.1 151 171-353 244-400 (484)
457 TIGR03238 dnd_assoc_3 dnd syst 98.7 9E-09 1.9E-13 114.1 5.1 52 170-224 19-70 (504)
458 TIGR02169 SMC_prok_A chromosom 98.7 1.7E-08 3.6E-13 126.2 8.1 77 292-371 1071-1151(1164)
459 smart00382 AAA ATPases associa 98.7 4E-07 8.6E-12 83.2 15.0 118 182-353 1-124 (148)
460 TIGR03861 phenyl_ABC_PedC alco 98.7 3.3E-06 7.1E-11 87.9 22.5 194 491-689 2-217 (253)
461 TIGR01420 pilT_fam pilus retra 98.6 3.4E-07 7.4E-12 99.8 11.5 56 305-369 187-242 (343)
462 PRK13891 conjugal transfer pro 98.5 6.1E-07 1.3E-11 108.6 14.2 69 306-375 680-751 (852)
463 TIGR01291 nodJ ABC-2 type tran 98.5 2E-05 4.4E-10 82.2 21.7 189 494-689 8-213 (253)
464 TIGR03881 KaiC_arch_4 KaiC dom 98.5 5.9E-08 1.3E-12 99.3 2.2 33 172-204 8-41 (229)
465 TIGR00611 recf recF protein. A 98.5 2.5E-07 5.4E-12 101.5 7.2 59 295-356 275-342 (365)
466 PRK07196 fliI flagellum-specif 98.4 1.9E-07 4.2E-12 103.7 5.7 86 169-256 142-239 (434)
467 TIGR01026 fliI_yscN ATPase Fli 98.4 1.6E-06 3.6E-11 97.0 13.1 175 169-383 150-346 (440)
468 PRK14079 recF recombination pr 98.4 3.8E-07 8.1E-12 99.7 7.7 75 295-377 263-346 (349)
469 cd01130 VirB11-like_ATPase Typ 98.4 5.4E-07 1.2E-11 89.6 7.9 84 172-257 14-100 (186)
470 TIGR02655 circ_KaiC circadian 98.4 1.3E-08 2.9E-13 115.7 -4.3 167 171-370 8-190 (484)
471 COG0419 SbcC ATPase involved i 98.4 1.1E-06 2.4E-11 107.5 10.6 78 292-371 812-897 (908)
472 PRK06002 fliI flagellum-specif 98.3 1.3E-06 2.7E-11 97.4 9.0 83 147-239 137-230 (450)
473 cd02023 UMPK Uridine monophosp 98.3 5.4E-07 1.2E-11 90.2 5.6 112 185-328 1-113 (198)
474 PRK05399 DNA mismatch repair p 98.3 1.1E-06 2.4E-11 106.3 8.6 138 170-365 595-738 (854)
475 TIGR03062 pip_yhgE_Cterm YhgE/ 98.3 1.2E-05 2.6E-10 81.0 13.5 106 582-691 58-171 (208)
476 PRK09825 idnK D-gluconate kina 98.2 8.5E-07 1.8E-11 87.6 3.7 66 182-253 2-70 (176)
477 TIGR02680 conserved hypothetic 98.2 1.7E-06 3.8E-11 109.2 7.4 60 293-355 1245-1316(1353)
478 TIGR00025 Mtu_efflux ABC trans 98.2 0.0001 2.2E-09 75.8 19.0 119 568-689 64-193 (232)
479 PLN03210 Resistant to P. syrin 98.2 4E-06 8.7E-11 105.1 9.8 164 174-392 198-365 (1153)
480 PRK13873 conjugal transfer ATP 98.2 5.8E-05 1.2E-09 91.4 18.3 46 311-356 633-679 (811)
481 cd01122 GP4d_helicase GP4d_hel 98.1 5.8E-05 1.3E-09 79.2 15.7 37 170-206 17-53 (271)
482 PRK13898 type IV secretion sys 98.1 7.6E-05 1.7E-09 90.3 17.9 49 309-357 638-687 (800)
483 TIGR00767 rho transcription te 98.1 6.6E-06 1.4E-10 90.2 7.4 53 148-207 129-192 (415)
484 PRK06315 type III secretion sy 98.0 1E-05 2.2E-10 90.3 8.3 109 170-281 152-277 (442)
485 cd00009 AAA The AAA+ (ATPases 98.0 4.2E-05 9.2E-10 70.5 10.6 55 301-356 72-131 (151)
486 PRK15066 inner membrane transp 98.0 0.0012 2.6E-08 69.0 22.5 195 490-690 7-216 (257)
487 PRK01889 GTPase RsgA; Reviewed 98.0 6.4E-06 1.4E-10 90.3 5.4 107 172-286 184-291 (356)
488 PF13555 AAA_29: P-loop contai 98.0 8.6E-06 1.9E-10 66.2 4.4 36 173-208 12-48 (62)
489 PF09818 ABC_ATPase: Predicted 98.0 0.00022 4.7E-09 78.7 16.1 160 179-374 241-416 (448)
490 PRK03846 adenylylsulfate kinas 97.9 5.8E-06 1.3E-10 83.0 3.5 56 181-237 22-77 (198)
491 PRK09270 nucleoside triphospha 97.9 1.1E-05 2.3E-10 83.0 5.4 73 181-256 31-107 (229)
492 PRK00454 engB GTP-binding prot 97.9 9.9E-05 2.1E-09 73.0 12.2 67 270-344 126-195 (196)
493 TIGR00416 sms DNA repair prote 97.9 3.9E-05 8.5E-10 86.6 9.8 62 312-373 169-247 (454)
494 cd01876 YihA_EngB The YihA (En 97.9 1.5E-05 3.1E-10 75.8 5.4 64 270-341 101-169 (170)
495 PRK10078 ribose 1,5-bisphospho 97.9 1.2E-05 2.6E-10 79.9 5.0 37 183-224 2-38 (186)
496 PF13558 SbcCD_C: Putative exo 97.9 2.4E-05 5.2E-10 68.7 6.3 48 293-340 30-90 (90)
497 TIGR00235 udk uridine kinase. 97.9 5.6E-06 1.2E-10 83.7 2.2 27 181-207 4-30 (207)
498 TIGR02524 dot_icm_DotB Dot/Icm 97.9 7.6E-05 1.6E-09 81.8 10.8 43 181-223 132-175 (358)
499 TIGR00554 panK_bact pantothena 97.8 1.4E-05 2.9E-10 85.0 4.6 72 184-256 63-137 (290)
500 TIGR00152 dephospho-CoA kinase 97.8 2.2E-05 4.8E-10 78.0 5.6 72 299-372 61-133 (188)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.2e-96 Score=849.45 Aligned_cols=524 Identities=50% Similarity=0.884 Sum_probs=439.3
Q ss_pred CCeeEEEEeEEEEEeeccc---------------------ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005488 146 LPIYLKFTDVTYKVILKGM---------------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~---------------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (694)
.+..++|.|++|+....+. ...+++.+|+|||+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 3568999999998753320 0113567999999999999999999999999999999999
Q ss_pred cCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005488 205 GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (694)
Q Consensus 205 G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (694)
|+......+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||+++.
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 97642224899999999987666678999999999999999999999988776655556666778899999999999999
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 005488 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (694)
Q Consensus 285 ~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (694)
||.+|+..+++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999988999999999999999999999999999999999999999999999999998899999999999877889999
Q ss_pred EEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhH
Q 005488 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444 (694)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (694)
+|++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+....... + .+ .+ ..
T Consensus 276 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~-~---------~~------~~---~~ 336 (659)
T PLN03211 276 SVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVS-E---------RE------KP---NV 336 (659)
T ss_pred eEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCcc-c---------cc------cc---hH
Confidence 999999999999999999999999999999999999999999987542110000 0 00 00 01
Q ss_pred HHHHHHHHHHHHhHHHhhhh--c-CCCCCcHHH---hhhcc-CCCCCcCCcHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 005488 445 HEYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKVS-SPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQV 517 (694)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~~-~~~~~~~~s~~~Q~~~L~~R~~~~~R~~~~~~~r~~~~ 517 (694)
.+.+.+.|++.......... . ......... ..+.. ..++.+.++||+|+.+|++|+++++|++.+.+.|+++.
T Consensus 337 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~ 416 (659)
T PLN03211 337 KQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQV 416 (659)
T ss_pred HHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 11122233211110000000 0 000000000 00000 11223557899999999999999999998888999999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 005488 518 LATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597 (694)
Q Consensus 518 ~~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~ 597 (694)
+++|+++|++||+++ +.++++|.|++||+++++++.+++.+++.|+.||+||+||+.+|+|++++|++|++++|+|+
T Consensus 417 i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~ 493 (659)
T PLN03211 417 IAAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPM 493 (659)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999984 57899999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCccC
Q 005488 598 NLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQVSKQ 677 (694)
Q Consensus 598 ~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~~ 677 (694)
.++.+++|++|+|||+||++++++||+|+++++++.++++++|+++|+++|++..|+.+++++++++++|+||+|+.+|.
T Consensus 494 ~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~ 573 (659)
T PLN03211 494 ELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPS 573 (659)
T ss_pred HHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986554
Q ss_pred ------CcccHHHHHHHhhh
Q 005488 678 ------TLHPQSLVYERIVQ 691 (694)
Q Consensus 678 ------~l~p~~~~~e~~~~ 691 (694)
|++|++|+|||+++
T Consensus 574 ~~~W~~ylS~~~y~~eal~~ 593 (659)
T PLN03211 574 CMAWIKYISTTFYSYRLLIN 593 (659)
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 68888999999875
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-95 Score=839.72 Aligned_cols=513 Identities=44% Similarity=0.750 Sum_probs=443.3
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC-
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~- 224 (694)
+..++|+|+++..+.+. ...+++|+|||++++|||++||||||||||||||++|+||.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999999864321 14688999999999999999999999999999999999998653 47899999997765
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
+.+++.+|||.|||.++|++||+|+|.|++.+|+|+..++++++++|+++++++||.+|+||++|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 46788899999999999999999999999999999988999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+||.+|+.||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHhHHHhhhh
Q 005488 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (694)
Q Consensus 385 ~~f~~~G~~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (694)
+||+++|++||++.||+||++|+++.+... .+..+..+ .......... .....+... ++. ...
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~~~~----~~~~~~~~---~~~~~~~~~~-~~~~~~~~~-~~~--------~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVDSGT----RELEEAVR---IAKLINKFSQ-TDNLKKTLE-ALE--------KSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccCCCc----hhHHhHHH---HHHHhhhccc-cchhhhhHH-HHh--------hhc
Confidence 999999999999999999999998854100 00000000 0000000000 000000000 000 000
Q ss_pred cCCCCCcHHHhhhccCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 005488 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA 543 (694)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~~~~~~~~~~~~~ 543 (694)
... + .......++||.|+++|++|.+++ +|++.+.+.|+++.+++|+++|++||+++. +..+++++.
T Consensus 323 ~~~---------~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STS---------K--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred ccc---------c--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 000 0 000111689999999999999997 688889999999999999999999999965 578888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHH
Q 005488 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFF 623 (694)
Q Consensus 544 g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~ 623 (694)
|++||++.++.|.+++.+++.|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|+++++.+|+
T Consensus 391 g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~ 470 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFL 470 (613)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhccccc--CccC------CcccHHHHHHHhhh
Q 005488 624 LSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--VSKQ------TLHPQSLVYERIVQ 691 (694)
Q Consensus 624 ~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~~~~------~l~p~~~~~e~~~~ 691 (694)
+|++++++..++++++|+++++++||...|++++++++++|++|+|||++ ..|. |++|.+|+||++++
T Consensus 471 ~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~ 546 (613)
T KOG0061|consen 471 YFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLI 546 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 4444 56667899999986
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.4e-90 Score=800.61 Aligned_cols=518 Identities=33% Similarity=0.549 Sum_probs=434.6
Q ss_pred eEEEEeEEEEEeecc-cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC-h
Q 005488 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-K 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~-~ 225 (694)
.++|.++. +++... .++++++++|+|+|++++|||++||+|||||||||||++|+|+.... ..+|+|.+||++++ .
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~ 95 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH
Confidence 46666665 432211 11234678999999999999999999999999999999999976432 24799999999986 3
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc-CCCCCHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRV 304 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~~~LSGGerqRv 304 (694)
.+++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++||.+|+.. .++|||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 5678899999999999999999999999998887777777888899999999999999999999753 678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++|+++|.|+++++.
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999889999999999998899999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHhH-HHhhh
Q 005488 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAE-NEKKK 463 (694)
Q Consensus 385 ~~f~~~G~~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 463 (694)
+||+++|++||++.||+||++|+++.+..... +. ....+.+.+.|.+.... .....
T Consensus 256 ~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~s~~~~~~~~~ 312 (617)
T TIGR00955 256 PFFSDLGHPCPENYNPADFYVQVLAVIPGSEN---ES--------------------RERIEKICDSFAVSDIGRDMLVN 312 (617)
T ss_pred HHHHHcCCCCCCCCChHHHHHHHhhcCccccc---ch--------------------HHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999999865322100 00 00001111222111000 00000
Q ss_pred hcCCCCCcHHH-hhhccCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 005488 464 LMAPIPLDEEI-KAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 541 (694)
Q Consensus 464 ~~~~~~~~~~~-~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~~~~~~~~~~~ 541 (694)
........... +.........+..+|+.|+.+|++|.++. +|++.+.+.|+++.+++|+++|++||+++. ++.++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~ 391 (617)
T TIGR00955 313 TNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQN 391 (617)
T ss_pred hhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHH
Confidence 00000000000 00000122346789999999999999986 788888899999999999999999999975 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHH
Q 005488 542 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 621 (694)
Q Consensus 542 ~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~ 621 (694)
+.|++|+++++++|.+++.++..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 99999999999888887888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--------ccCCcccHHHHHHHhhh
Q 005488 622 FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQV--------SKQTLHPQSLVYERIVQ 691 (694)
Q Consensus 622 f~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--------~~~~l~p~~~~~e~~~~ 691 (694)
||+|+++++++.++++++|+++++++|+...|+.+++++++++++|+||+++. |-.|++|++|+|||++.
T Consensus 472 f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~ 549 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLI 549 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999973 33579999999999875
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.1e-87 Score=829.34 Aligned_cols=513 Identities=28% Similarity=0.471 Sum_probs=434.7
Q ss_pred CCeeEEEEeEEEEEeecccc-----cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC
Q 005488 146 LPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G 220 (694)
.+..+.|+||+|.++.+... ..+++.+|+|||++++||+++||+||||||||||||+|+|+...+..+|+|.+||
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG 943 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 (1470)
T ss_pred CcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence 35579999999998543210 1134579999999999999999999999999999999999864334689999999
Q ss_pred EeCCh-hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 221 HPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 221 ~~~~~-~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
++..+ ..++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.++.|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 98763 45678999999999999999999999998877766666677778899999999999999999998777899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEEec
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (694)
|||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999988999999999999778899999999996 8999999
Q ss_pred CH----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHH
Q 005488 379 KA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAY 452 (694)
Q Consensus 379 ~~----~~~~~~f~~~-G~-~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (694)
++ +++++||+++ |+ +||++.|||||++|+++.+... +. .. .+.+.|
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~~--~~-----------------d~~~~~ 1155 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------KL--GI-----------------DFAEHY 1155 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------cc--cc-----------------hHHHHH
Confidence 96 5899999998 56 4999999999999997642110 00 00 011111
Q ss_pred HHHHhH----HHhhhhcCCCCCcHHHhhhccCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHH
Q 005488 453 ETRVAE----NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLL 527 (694)
Q Consensus 453 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~l 527 (694)
+++... ........+.+.. +.......+..+||+|+.+|++|++++ +|++.+.+.|+++.+++|+++|++
T Consensus 1156 ~~s~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~ 1230 (1470)
T PLN03140 1156 KSSSLYQRNKALVKELSTPPPGA-----SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTI 1230 (1470)
T ss_pred hccHHHHHHHHHHHHhccCCCCc-----cccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 111000 0000011111100 011123457899999999999999985 899999999999999999999999
Q ss_pred hcCCCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 005488 528 WWQSDSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLF 605 (694)
Q Consensus 528 f~~~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif 605 (694)
||+++.+. ..+++++.|++|+++++.++..+...++.|+.||+||+|||++|+|++++|++|++++|+|+.++.+++|
T Consensus 1231 f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if 1310 (1470)
T PLN03140 1231 FWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYY 1310 (1470)
T ss_pred hhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997542 3578889999999999888877767789999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--------ccC
Q 005488 606 LVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQV--------SKQ 677 (694)
Q Consensus 606 ~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--------~~~ 677 (694)
.+|+|||+||+++++.||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||+||+ |..
T Consensus 1311 ~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~ 1390 (1470)
T PLN03140 1311 TLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYY 1390 (1470)
T ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999983 345
Q ss_pred CcccHHHHHHHhhh
Q 005488 678 TLHPQSLVYERIVQ 691 (694)
Q Consensus 678 ~l~p~~~~~e~~~~ 691 (694)
|++|+.|++|+++.
T Consensus 1391 ~isp~~y~~~~l~~ 1404 (1470)
T PLN03140 1391 WICPVAWTVYGLIV 1404 (1470)
T ss_pred HcCHHHHHHhhhHH
Confidence 78999999999975
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.9e-87 Score=826.55 Aligned_cols=503 Identities=28% Similarity=0.454 Sum_probs=419.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCcccEEEECCEeCCh---hccCcEEEEccCCcCCCC
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~--~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~ 243 (694)
.+++|+|||+++++||+++|+||||||||||||+|+|+... ++.+|+|.+||+++.+ ..++.++||+|+|.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 2468999999998742 356679999999999999
Q ss_pred CCHHHHHHHHHhccCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005488 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (694)
Q Consensus 244 lTV~Enl~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl 318 (694)
+||+|||.|++.++.+. ..++++..++ ++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|+|||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998876543 2344444444 467899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCC
Q 005488 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (694)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~ 397 (694)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 99999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHH------hHHHhhhhcCCC-CC
Q 005488 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRV------AENEKKKLMAPI-PL 470 (694)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~ 470 (694)
.|||||++|+++.+.+... ...+++. .... +.+.++|+++. ...+......+. ..
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~------------~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 374 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKV------------PRTP----QEFETYWRNSPEYAQLMKEIDEYLDRCSESDT 374 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccC------------CCCH----HHHHHHHHcCHHHHHHHHHHHHHhhhccchhh
Confidence 9999999999865432110 0000000 0011 11222222110 000000000000 00
Q ss_pred cH-------HHhhhccCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 005488 471 DE-------EIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQ 542 (694)
Q Consensus 471 ~~-------~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~~~~~~~~~~~~ 542 (694)
.+ ..+.+.......+..|||+|+++|++|++++ +||+.+++.|+++.+++|+++|++||+++. ++.++++|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r 453 (1394)
T TIGR00956 375 KEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSR 453 (1394)
T ss_pred HHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHH
Confidence 00 0001111233467889999999999999986 788888999999999999999999999975 57899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHH
Q 005488 543 AGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPF 622 (694)
Q Consensus 543 ~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f 622 (694)
.|++||++++.+|+++ ..+..++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++|
T Consensus 454 ~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~F 532 (1394)
T TIGR00956 454 GGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532 (1394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHH
Confidence 9999999999888874 567778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--------ccCCcccHHHHHHHhhh
Q 005488 623 FLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQV--------SKQTLHPQSLVYERIVQ 691 (694)
Q Consensus 623 ~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--------~~~~l~p~~~~~e~~~~ 691 (694)
|+|+++++++.+++.++++++++++|++..|+.+++++++++++|+||+||+ |..|++|++|+|||++.
T Consensus 533 f~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 533 FFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999984 34578999999999975
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3e-85 Score=812.49 Aligned_cols=510 Identities=30% Similarity=0.497 Sum_probs=426.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChhc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~~~~ 227 (694)
.++|+||+|+|..+ ++++.+|+|||++++|||++||+||||||||||||+|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 58999999998421 23568999999999999999999999999999999999976421 35799999999987677
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88899999999999999999999999988776666677778889999999999999999998643 38999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC-eEEEecCH----H
Q 005488 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (694)
Q Consensus 308 ~aL~~~P~-iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G-~iv~~G~~----~ 381 (694)
++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|.|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999997777889999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHhHHH
Q 005488 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (694)
Q Consensus 382 ~~~~~f~~~G~-~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (694)
++++||+++|+ +||++.|||||++|+++.+.... ...+. .+.+..++..+.. .+...
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~----~~~~~-------~~~~~~s~~~~~~--------~~~~~--- 1051 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH----ANQDY-------HEVWRNSSEYQAV--------KNELD--- 1051 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc----hhccH-------HHHHhcCHHHHHH--------HHHHH---
Confidence 78999999996 99999999999999986432110 00000 0001000000000 00000
Q ss_pred hhhhcCCCCCcHHHhhhccCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Q 005488 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (694)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~~~~~~~~~ 539 (694)
....+...... .. .......+.++||+|+++|++|.+++ +|++.+.+.|+++++++|+++|++||+++. ++.++
T Consensus 1052 --~~~~~~~~~~~-~~-~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1052 --RLEAELSKAED-DN-DPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred --HhhcccccCcc-cc-ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 00000000000 00 00122457899999999999999986 899999999999999999999999999975 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 005488 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMG 618 (694)
Q Consensus 540 ~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~-~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~ 618 (694)
++|+|++|+++++..+. +...++.|+.||.+| +|||.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||+.+
T Consensus 1127 ~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 99999999988776654 346778898988885 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--------ccCCcccHH
Q 005488 619 AGP-------FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQV--------SKQTLHPQS 683 (694)
Q Consensus 619 ~~~-------f~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--------~~~~l~p~~ 683 (694)
+.. |++|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||++++ |-.|++|+.
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 766 99999999999999999999999999999999999999999999999999983 345899999
Q ss_pred HHHHHhhh
Q 005488 684 LVYERIVQ 691 (694)
Q Consensus 684 ~~~e~~~~ 691 (694)
|++|+++.
T Consensus 1286 y~~~~l~~ 1293 (1394)
T TIGR00956 1286 YLVQALLS 1293 (1394)
T ss_pred HHHHHHHH
Confidence 99999975
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.4e-85 Score=813.03 Aligned_cols=505 Identities=26% Similarity=0.416 Sum_probs=415.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh-hccCcEEEEccCCcCCCCCC
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lT 245 (694)
.++.||+|||+.|+|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+ ..++.++||+|+|.+++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999976421 248999999998854 23678999999999999999
Q ss_pred HHHHHHHHHhccCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCccCC
Q 005488 246 VKETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVR 294 (694)
Q Consensus 246 V~Enl~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (694)
|+|||.|++.++.+. ...++++ +..++++++.+||++++||.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998765321 1112211 123577899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999987 489999999999888999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHH
Q 005488 374 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYE 453 (694)
Q Consensus 374 iv~~G~~~~~~~~f~~~G~~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (694)
++|+|+++++.+||+++|++||++.|||||++|+++.+.+. ... ... ..|......+.+.++|+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~---------~~~-~~~------~~p~~~~~~~~~~~~~~ 479 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE---------QYW-ADR------NKPYRYISVSEFAERFK 479 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh---------hhh-hcc------CCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998643211 000 000 00000001122344444
Q ss_pred HHHhHH-HhhhhcCCCCCcHHHhhhccCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC
Q 005488 454 TRVAEN-EKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS 531 (694)
Q Consensus 454 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~ 531 (694)
+..... ...+...+ .+.....+.......|..+++.|+..|++|.++. +||+.+++.|+++.+++|+++|++||++
T Consensus 480 ~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~ 557 (1470)
T PLN03140 480 SFHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT 557 (1470)
T ss_pred hcHHHHHHHHHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 321110 00011000 0000001111123458899999999999999986 7888888999999999999999999999
Q ss_pred CCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005488 532 DSK--SPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIV 609 (694)
Q Consensus 532 ~~~--~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~iv 609 (694)
+.+ +..+.+.+.|++||++++.+|.+ +..+..++.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+
T Consensus 558 ~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~ 636 (1470)
T PLN03140 558 EMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636 (1470)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 642 12345678899999988877665 577899999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--------ccCCccc
Q 005488 610 YFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQV--------SKQTLHP 681 (694)
Q Consensus 610 Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--------~~~~l~p 681 (694)
|||+||++++++||+|+++++++.++++++++++++++|++.+|+.+++++++++++|+||+||+ |-.|++|
T Consensus 637 Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp 716 (1470)
T PLN03140 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSP 716 (1470)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999983 3457899
Q ss_pred HHHHHHHhhh
Q 005488 682 QSLVYERIVQ 691 (694)
Q Consensus 682 ~~~~~e~~~~ 691 (694)
+.|+|||++.
T Consensus 717 ~~Ya~eal~~ 726 (1470)
T PLN03140 717 LSYGFNALAV 726 (1470)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-85 Score=769.04 Aligned_cols=507 Identities=30% Similarity=0.510 Sum_probs=432.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhcc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLK 228 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~-~~~~ 228 (694)
..|+|+.|..+. .++.+++|+|||+.++||.++||||+||||||||||+|+||...+..+|+|++||.|.+ +.++
T Consensus 788 ~~w~dl~~~~~~----qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 788 FYWVDLPYEMPI----QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred EEEEeCCccccc----cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 444444444422 23677899999999999999999999999999999999999876678999999999998 6789
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
|.+|||.|+|.|.+.+||||.|.|+|.+|+|..++.+++.+.|+++++.++|++++|..||..+ .|||.+||||++||.
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGV 942 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEEecCHH----H
Q 005488 309 EIIINP-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKAS----E 382 (694)
Q Consensus 309 aL~~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~~G~~~----~ 382 (694)
+|+.|| .||+|||||||||+.++..|++.+|++++.|+||+|++|||+.++++.||++++|++ |+.||.|+.. .
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~ 1022 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSK 1022 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHH
Confidence 999999 899999999999999999999999999999999999999999999999999999986 7999999974 4
Q ss_pred HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHhHHHh
Q 005488 383 AMAYFSSIG-CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461 (694)
Q Consensus 383 ~~~~f~~~G-~~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (694)
+++||+++| .+||...|||||++|+++..... . ...+..+.+..++..+...+ +-
T Consensus 1023 li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------~--~~~D~a~~w~~S~e~k~~~e-------------~v 1078 (1391)
T KOG0065|consen 1023 LIEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------S--LSVDFAEIWKNSEEYKRNKE-------------LV 1078 (1391)
T ss_pred HHHHHHhcCCccCCCCCChHHHHHhhccccccc---------c--cCccHHHHHhccHHHHHHHH-------------HH
Confidence 778999997 78998889999999998643211 0 00011111111111111110 01
Q ss_pred hhhcCCCCCcHHHhhhccCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH
Q 005488 462 KKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLE 540 (694)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~~~~~~~~~~ 540 (694)
.++..+.+. .......+++|+.|+|.|+..+++|++.. ||+|.+.++|++..++.||++|+.||+.| .+..++|
T Consensus 1079 ~~l~~~~~~----~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lq 1153 (1391)
T KOG0065|consen 1079 KELSQPPPG----FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQ 1153 (1391)
T ss_pred HHHhcCCcc----CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHH
Confidence 111122111 11122345668899999999999999874 99999999999999999999999999998 4688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChH
Q 005488 541 DQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAG 620 (694)
Q Consensus 541 ~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~ 620 (694)
|.+|++|..+++.+-...-...+.+..||.+++||+++|+|++.+|++|++++|+|+.++++.+|.+++|||+|+..++.
T Consensus 1154 n~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~ 1233 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTAS 1233 (1391)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHH
Confidence 99999999887754432222345667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--cc------CCcccHHHHHHHhh
Q 005488 621 PFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQV--SK------QTLHPQSLVYERIV 690 (694)
Q Consensus 621 ~f~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--~~------~~l~p~~~~~e~~~ 690 (694)
+|++|++.+++..++.+.+|+++.+++||.+.|..+.++++..+.+|+||++|+ +| .|++|+.|..|+++
T Consensus 1234 ~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli 1311 (1391)
T KOG0065|consen 1234 KFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLI 1311 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999984 23 36888889988876
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.2e-77 Score=694.98 Aligned_cols=505 Identities=31% Similarity=0.515 Sum_probs=422.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-cccEEEECCEeCChhc-cCcEEEEccCCcCCCCCC
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-VGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~-~~G~I~~~G~~~~~~~-~~~i~yV~Q~~~l~~~lT 245 (694)
....+|+|+|+-++||+++.++||+||||||||+.|+|.+..-. ..|+|.+||.+.++.. ++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 34579999999999999999999999999999999999765422 3579999999987533 577999999999999999
Q ss_pred HHHHHHHHHhccCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005488 246 VKETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 320 (694)
|+|+|.|+++++.+.. ..+.++.+ ..+.+++.+||++|+||.||+...||+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999987732 33333332 567889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCC
Q 005488 321 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMN 399 (694)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~n 399 (694)
|+|.|||+.++.++++.|+++++. +.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 999999999999999999999874 8899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHhH-HHhhhhcCCCCCcHHHhhhc
Q 005488 400 PAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAE-NEKKKLMAPIPLDEEIKAKV 478 (694)
Q Consensus 400 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 478 (694)
+|||+.++++...... +-. ..+. ........+.. +.|.+.... ....+... +.+.....+.
T Consensus 366 ~ADfLt~vts~k~~~~--~~~-------~~~~---~~~~~~~~ef~----~~~~~s~~~~~l~~~l~~--~~~~~k~~~~ 427 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQ--YWN-------KRSK---PYPYTSVSEFA----EYFLNSEDYAKLKKELSK--PYDKSKKHKA 427 (1391)
T ss_pred HHHHHHHhhcCccccc--ccc-------ccCC---CcccCCHHHHH----HHHhcchhhHHHHHHhcc--hhhhhhccch
Confidence 9999999987321110 000 0000 00011112222 222211110 01111111 1111111222
Q ss_pred cCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 005488 479 SSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFP 557 (694)
Q Consensus 479 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~ 557 (694)
......|..+.|.|+..|++|.+.. .||..++..++++.+++|+++|++||+....+..+.+.|.|++||.+++.+|.+
T Consensus 428 al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~ 507 (1391)
T KOG0065|consen 428 ALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG 507 (1391)
T ss_pred hhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh
Confidence 3445678899999999999999975 666667778999999999999999999973456678999999999999988776
Q ss_pred HHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHH
Q 005488 558 IFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQ 637 (694)
Q Consensus 558 ~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~ 637 (694)
++.++...+.||||+|||...+|++|||.++.+++++|+.++..++|.+|+||++||.+++++||.++++++++++|+.
T Consensus 508 -laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s 586 (1391)
T KOG0065|consen 508 -LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMS 586 (1391)
T ss_pred -HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--------ccCCcccHHHHHHHhhh
Q 005488 638 GLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQV--------SKQTLHPQSLVYERIVQ 691 (694)
Q Consensus 638 slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--------~~~~l~p~~~~~e~~~~ 691 (694)
+++++++++++++..|++++++.++...+++||+||+ |..|++|+.|+||+++.
T Consensus 587 ~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~ 648 (1391)
T KOG0065|consen 587 GLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMS 648 (1391)
T ss_pred HHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999994 34468888999999873
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-63 Score=551.92 Aligned_cols=357 Identities=25% Similarity=0.380 Sum_probs=300.5
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccc-ccccccch
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLK-LELDEVSS 87 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (694)
++.++.||+.|.++.+|+|.+++.+|||+|+++..|.++|.++++.....+.|++.+++.+ +.++.+..+ ..+.-+++
T Consensus 314 klS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~~ 392 (716)
T KOG0058|consen 314 KLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILFY 392 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999999999999999999999 555555555 45555789
Q ss_pred hhHHHhhhhhhhhhhhccccCCCChhhh----------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 005488 88 GAALSRASSASLGLSFSFTGFTMPPDEI----------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (694)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (694)
|+.++..|.++.|.+.+|..|....... +..+.|+..|-.+.++......|. .....|+
T Consensus 393 Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~-----~~~G~Ie 467 (716)
T KOG0058|consen 393 GGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPD-----HLQGVIE 467 (716)
T ss_pred ccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccc-----cccceEE
Confidence 9999999999999999999988765432 233555555544444332111111 2345799
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~ 227 (694)
|+||+|.|+. +++.+||||+||+|+|||++|||||||+||||+.++|. |+|+|. +|+|++||+|+++ .+
T Consensus 468 F~~VsFaYP~-----Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~Pt-sG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 468 FEDVSFAYPT-----RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPT-SGRILLDGVPISDINHKYL 540 (716)
T ss_pred EEEeeeecCC-----CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCeehhhcCHHHH
Confidence 9999999853 46788999999999999999999999999999999999 688765 8999999999963 57
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
|++||+|.|||.||.. ||+|||.|+......+++..+.+.+.+++++..+ ++++||.||+++. .||||||||++||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~--p~gY~T~VGEkG~-qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNF--PDGYNTVVGEKGS-QLSGGQKQRIAIA 616 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCccc-cccchHHHHHHHH
Confidence 9999999999999965 9999999996521111222333455667777654 9999999997654 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|||++||+||||||.||+||++++..+.+.|.++.+ ++|||+|+|++++ .+.+|+|+++++|++++.|+|+|+++
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999999999999876 6999999999985 68899999999999999999999974
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-53 Score=416.61 Aligned_cols=218 Identities=33% Similarity=0.587 Sum_probs=198.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++||+++| ++..+|+|||++|++||+++|+|||||||||||++|.| +. .+++|+|.++|+++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~-LE-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LE-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC-Cc-CCCCceEEECCEeccchhh
Confidence 58999999998 57789999999999999999999999999999999997 44 356899999998764
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..+|+++|+|||+..|||++||.||+.++...- ...++++.++++.++|+.+||.+.+|. ++.+|||||+||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 247899999999999999999999999975432 246788888999999999999988875 678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+... +-+.+|||++|++|++++.|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999875 6788999999999999999999886
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
No 12
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-54 Score=506.49 Aligned_cols=361 Identities=25% Similarity=0.345 Sum_probs=272.6
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccch
Q 005488 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (694)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (694)
++++++.++.-+++-++|||++++.+||.+|+|+..+.+||++-+......+.+++...|...-....+-...-...+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999999999999999999999999988887776665555544111112222334455678
Q ss_pred hhHHHhhhhhhhhhhhccccC----------------CCChhhhccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 005488 88 GAALSRASSASLGLSFSFTGF----------------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (694)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (694)
|+.+...+....|..+.-... ....+..++...+..-|-.+.++..... .. ........++
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~-~~--~~~~~~g~ie 352 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKG-GR--VLSSIKGEIE 352 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccccc-CC--cccccccceE
Confidence 877777765555444333221 1112222222222222222222211100 00 1122345799
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhc
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~----~~~ 227 (694)
|+||+|+|+ .+++.+||+|+|++|++|+.+||||||||||||++++|. |+++|. +|+|++||.++. +.+
T Consensus 353 f~nV~FsYP-----sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 353 FRNVCFSYP-----SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred EEEEEecCC-----CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHH
Confidence 999999984 345778999999999999999999999999999999999 578765 899999999986 468
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
|++||.|+|+|.||. .||+|||.|+......+++.++.+.+.+++++.. |++.+||.+|++.+. ||||||||++||
T Consensus 426 r~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~q-LSGGQKQRIAIA 501 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQ-LSGGQKQRIAIA 501 (1228)
T ss_pred HhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCC-CChHHHHHHHHH
Confidence 999999999999995 6999999998422111112222233345566655 489999999987764 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|||++||+|||||||||+||++++..+.++|.+.. .|+|.|+++|++++ .+.+|+|++|++|+|++.|+|+|+++
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999998876 49999999999985 57799999999999999999999986
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-51 Score=408.31 Aligned_cols=235 Identities=30% Similarity=0.565 Sum_probs=208.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+|+|||++| +++.+++|+|++|++||+++++|||||||||+||+|.+ +.+| ++|+|++||++++.
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 48999999998 47789999999999999999999999999999999995 5555 58999999999864
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
.+|++||||-|.-.|||++||.|||.+...+. ..++++.+++++++++.+||+.. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 58999999999999999999999999976653 45788889999999999999742 134568999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. +.++++|||++|++|+++.+++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999765 999999999975 68899999999999999999999998
Q ss_pred HHHHHhcCCCCCCCCChH-HHHHHhhcCCCC
Q 005488 384 MAYFSSIGCSPQIAMNPA-EFLLDLANGNLH 413 (694)
Q Consensus 384 ~~~f~~~G~~~p~~~npa-d~~~~~~~~~~~ 413 (694)
+. ||| ||+-+.+..+.+
T Consensus 224 l~-------------~Pan~FV~~f~g~~~~ 241 (309)
T COG1125 224 LA-------------NPANDFVEDFFGESER 241 (309)
T ss_pred Hh-------------CccHHHHHHHhccccc
Confidence 73 454 677777665433
No 14
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.9e-53 Score=494.42 Aligned_cols=354 Identities=25% Similarity=0.364 Sum_probs=281.0
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchh
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+-+++.++...++...|.|..++.+||++++.+.--...|.+.+.+....+.++++-.|.-.-.+.+...-......++|
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566788899999999999999999999999988888888877776666666555554432223333334444445555
Q ss_pred hHHHh-----------------hhhhhhhhhhccccCCCChhhhccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 005488 89 AALSR-----------------ASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (694)
Q Consensus 89 ~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (694)
+.++. +++...+...+|.+ +.-++..++.+.|...|-.+.++.... .....+.....|+
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P-d~~ka~~Aa~~iF~i~dr~~~i~~~~~---~~~~~~~~~G~I~ 989 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP-DISKAKIAAGSIFEILDRKPTIDPDST---SGGKLPNVKGDIE 989 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHhcCCCCCCCCCC---CCCccccceeEEE
Confidence 55554 44667777777777 666666666666665554443332211 1111233456799
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhc
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~----~~~ 227 (694)
|+||+|.|+ .+++.+||+|+|++|++|+.+||||||||||||.+.+|. |+|+|. +|.|.+||++++ +.+
T Consensus 990 ~~~V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 990 FRNVSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EeeeEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHH
Confidence 999999984 456889999999999999999999999999999999999 788765 899999999986 368
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
|+++|.|.|+|.||. .|++|||.|+.. + .+.++ +.+.+++++. +|++++||.||++.. +|||||||
T Consensus 1063 R~~i~lVsQEP~LF~-~TIrENI~YG~~----~-vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~-QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN-GTIRENIAYGSE----E-VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGV-QLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc-ccHHHHHhccCC----C-CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccC-cCCchHHH
Confidence 999999999999996 599999999921 1 33333 3444556664 669999999998764 69999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++||||+++||+||||||.||+||+++++.+.++|.+.. .|+|.|+++|++++ .+.||.|+|+++|+|++.|+|++
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999976 49999999999985 68999999999999999999999
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 1211 L~~ 1213 (1228)
T KOG0055|consen 1211 LLA 1213 (1228)
T ss_pred HHh
Confidence 986
No 15
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.8e-52 Score=480.39 Aligned_cols=358 Identities=25% Similarity=0.341 Sum_probs=274.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.-+.-++..+...|.+.+.+|+++.+.++....+..++..+....+.+..-.......-...+|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677888999999999999999999999999988877776653333333333344555566677789999
Q ss_pred HHHhhhhhhhhhhhccccCCC----ChhhhccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
.++..+..+.|.+++|..+.. |...+... +...+.+.+++-+... .....+.....++|+
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~----~~~~~~~~~g~I~~~ 475 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK----TLIHLPKLQGEIEFE 475 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc----ccccccccCceEEEE
Confidence 999999999999999986443 32222211 1111111111111100 012334455689999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~ 229 (694)
||+|+|. ..+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+ +.| .+|+|.+||.|+.+ .+|+
T Consensus 476 nvsf~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~p-~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 476 NVSFRYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YKP-QQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred EEEEEeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CCC-CCceEEECCEeHHhcCHHHHHh
Confidence 9999993 2334799999999999999999999999999999999985 544 58999999999863 6899
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
+||||+||+.+|. .||+||+.++......+..-.+.+.+.+++.+.. ++.++||.+|+.+ .+||||||||++||||
T Consensus 548 ~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~E~G-~~LSGGQrQrlalARa 623 (709)
T COG2274 548 QVGYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGEGG-ANLSGGQRQRLALARA 623 (709)
T ss_pred heeEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh--cccccccccccCC-CCCCHHHHHHHHHHHH
Confidence 9999999999996 4999999997532211112222334445666655 4888999998754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (694)
|+++|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++. .+.||||+||++|+++++|+|+|+++.
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999999999875 8999999999874 789999999999999999999999864
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-50 Score=411.48 Aligned_cols=222 Identities=28% Similarity=0.471 Sum_probs=199.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+++||++.|..+ ..+...+|+|||++|++||+++|+|.||||||||++++.+ +..| ++|+|.+||+++..
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~P-tsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP-TSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCCC-CCceEEEcCEecccCCh
Confidence 48999999988431 1234579999999999999999999999999999999996 5444 58999999988752
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..|++||++||++.|+...||+||++|...+. ..++++.++++.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 46889999999999999999999999998765 36789999999999999999987764 6789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
|||+|||||+.+|+||++|||||+|||++...|++.|+++.++ |.||+++||++. -+-+.|||+.+|++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999765 999999999975 47789999999999999999999
Q ss_pred HHHH
Q 005488 381 SEAM 384 (694)
Q Consensus 381 ~~~~ 384 (694)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8874
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.2e-49 Score=392.76 Aligned_cols=221 Identities=32% Similarity=0.522 Sum_probs=200.0
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|++++|+++| +++.||+|||++|++||+++||||||||||||||+|.|.+. +.+|+|+++|+++.+
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 67899999999999999999999999999999999999664 468999999999742
Q ss_pred -----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
..|+++|++||+-.||..+||+||+.|..+-. ..++++..++.+..-|+.+||+.. +++.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 46889999999999999999999999976533 457888888999999999999764 2335789999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
+||++|||||+.||+|||+||||+||||.++..+.++++++.+. |.|++++|||..+ ++..|||+++|.+|+|+..|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999876 9999999999865 889999999999999999999
Q ss_pred HHHHHH
Q 005488 380 ASEAMA 385 (694)
Q Consensus 380 ~~~~~~ 385 (694)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-48 Score=412.49 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=199.5
Q ss_pred eEEEEeEEEEEeeccccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
.++++||+++| + ++.+|+||||+|++||++||+||||||||||+|+|+|... +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 57899999998 4 5789999999999999999999999999999999999664 468999999998764
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++++||++|++.+++.+||+|||.|.+.++... ....+++++++++.+||++..++ .+++||+|||||+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56888999999999999999999999999887532 24567789999999999874443 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
+||+||+.+|++|||||||+|||+.++.++.+.|++++++| +||+++||++. ++..+||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999986 57888999999999999999999998
Q ss_pred HHHHHh
Q 005488 384 MAYFSS 389 (694)
Q Consensus 384 ~~~f~~ 389 (694)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776654
No 19
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.1e-49 Score=401.25 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++||++.| +++++|+|+||++++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 58999999999 46789999999999999999999999999999999998654 45899999999985
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
+++.+++|||||++.....+||+|-+.++....... ....+++++.+++.++.+|+.+.++..+ .+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 357789999999988877899999999985432111 1223445568999999999999888654 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
+.|||||+.+|+||+||||||.||...+.++++.++++++ +|+|||+++||++. ..++||++++|++|+++..|+|++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999985 59999999999975 679999999999999999999988
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=392.19 Aligned_cols=204 Identities=32% Similarity=0.512 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.+++++|++.| +...+|+|||++|.+||+++|+||||||||||||+|+|... +.+|+|.++|+++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCC
Confidence 58999999998 34789999999999999999999999999999999999543 4689999999998 5556
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
..++||||++.|||.+||+||+.++...+. .++++.++++.+.|+.+||.+..| .++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~-----~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFED-----KYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhh-----cCccccChHHHHHHHHHH
Confidence 789999999999999999999999987642 456677779999999999988776 468999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
||+.+|+||+||||+++||+.++..+.+.|.+++++ ++||+++|||.. |...++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999764 899999999976 577899999999984
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=416.15 Aligned_cols=234 Identities=27% Similarity=0.469 Sum_probs=207.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..++++||+++| ++..+|+|+|++|++||+++|+|||||||||||++|+|. .. +++|+|.+||+++..
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-e~-p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-EQ-PSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCceEEECCEECCCCC
Confidence 369999999998 467899999999999999999999999999999999994 33 468999999999974
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..+|.||+|||+..|||+|||+||+.|+...+ ....+++.++++.+.++.++|++..+ +++.+|||||+|||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~-----R~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFAD-----RKPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhh-----hChhhhChHHHHHHH
Confidence 46889999999999999999999999998733 33456778899999999999988665 467899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...++|||++|++|+|...|+|+|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999764 999999999965 678999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHHh
Q 005488 385 AYFSSIGCSPQIAMNPAEFLLDL 407 (694)
Q Consensus 385 ~~f~~~G~~~p~~~npad~~~~~ 407 (694)
..|...-.|||+-+.
T Consensus 226 --------~~P~~~fVA~FiG~~ 240 (352)
T COG3842 226 --------ERPATRFVADFIGES 240 (352)
T ss_pred --------hCcchHHHHHHhCcc
Confidence 345555567777643
No 22
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-48 Score=411.15 Aligned_cols=218 Identities=28% Similarity=0.496 Sum_probs=198.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~ 226 (694)
.|+++||++.| ++..+|+|+|++|++||+++|+||||||||||||+|+|.. + +++|+|.++|+++++ -
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~-~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-E-PTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEECCCCCh
Confidence 58999999998 2323999999999999999999999999999999999954 3 468999999999975 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.+|.||+|||+..|||+|||+||+.|+.+.+ ..++++.++++.++.+.|+|++..|. .+++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHH
Confidence 4688999999999999999999999998765 45788899999999999999998875 468999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|++|||.. ++..++|||++|++|++...|+|.|+.+
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999765 899999999965 6889999999999999999999999853
No 23
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.2e-48 Score=387.07 Aligned_cols=210 Identities=35% Similarity=0.583 Sum_probs=180.9
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
++++||++.|..++ ....+|++||++|++||++||+|||||||||||++|.|.. .| ++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~p-t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KP-TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CC-CCceEEECCEEcCcCCHH
Confidence 67899999884321 2367999999999999999999999999999999999854 34 69999999998752
Q ss_pred ---hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ---~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
.+ ++.||||||+..|+|++||+||+.+.+.... .+.....++++++++.+||.+..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 23 5679999999999999999999998765542 2232567778899999999865552 35679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|||+|||||+.+|+|++.||||.+||++++..|++.|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999974 6789999999999994
No 24
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.5e-49 Score=457.96 Aligned_cols=356 Identities=25% Similarity=0.327 Sum_probs=257.7
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccch
Q 005488 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (694)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (694)
.+..+..++..++..+...|...+.+++++|+.+..+.+++.++.........+.....+........+..-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999999999999888888776654444422111111111000111111112333456
Q ss_pred hhHHHhhhhhhhhhhhccccCCCC----hhhh------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 005488 88 GAALSRASSASLGLSFSFTGFTMP----PDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (694)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (694)
|..+...+..+.|.+.+|..+... ...+ +..+.+...+.++.++..... .......|+
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~------~~~~~~~I~ 330 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP------LKDTIGSIE 330 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC------CCCCCCeEE
Confidence 666666666667766666543321 1111 111222222221111111110 111224599
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~ 227 (694)
|+||+|.|+ +++++|+|+|++++|||.+||+||||||||||+|+|.| +++| .+|+|.+||+++++ .+
T Consensus 331 f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 331 FENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred EEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHH
Confidence 999999982 25789999999999999999999999999999999995 6665 58999999999863 68
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
|++|+||+||+.+|. .||+|||.++......+.+.++.+...+++.++.+ ++++||.+|+.+ ..||||||||++||
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G-~~LSgGQrQrlaiA 477 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGERG-VNLSGGQRQRLAIA 477 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCCC-ccCCHHHHHHHHHH
Confidence 999999999999997 69999999984321111122222333345566555 888999999543 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||+++||+||+||||||+||+.++..|.+.++++. +++|+|+++|++++ .+.||+|++|++|++++.|+|+|+++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999887 57899999999965 45699999999999999999999986
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=391.45 Aligned_cols=219 Identities=31% Similarity=0.548 Sum_probs=189.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++|+++.|. .+ ++|+||||++++|++++|+||||||||||+|+|+|.+. +.+|+|.++|++..+..
T Consensus 3 ~~i~v~nl~v~y~-------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYG-------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEEC-------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 3699999999992 23 69999999999999999999999999999999999664 45899999999876543
Q ss_pred -cCcEEEEccC---CcCCCCCCHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 228 -~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
+.+||||||. |.-|| +||+|.+.++...+.. ... .+.+++.++++|+.+|+.+.+|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4689999995 44576 6999999987533321 112 23447889999999999999998775 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|||-|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++||+.. +.++||+|+.| ++++++.|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~L-n~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICL-NRHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEE-cCeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999875 78999999999 57889999998
Q ss_pred HHHH
Q 005488 382 EAMA 385 (694)
Q Consensus 382 ~~~~ 385 (694)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
No 26
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-48 Score=452.38 Aligned_cols=215 Identities=25% Similarity=0.414 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++|+||+|.|. +++++|+|+|++|+|||.+||+||||||||||+++|+| ++ |. +|+|.+||+++.+
T Consensus 349 ~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g-~~-p~-~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FL-PY-QGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc-CC-CC-CcEEEECCEecccCCH
Confidence 599999998662 24679999999999999999999999999999999998 45 54 8999999999863
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+|++|+||+|++.+|+. |++|||.++.. +.++++..+ .+++.++. |+++.||.+|+.. ..||||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~~a~l~~~i~~--lp~G~dT~vge~G-~~LSGG 489 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPL--LPQGLDTPIGDQA-AGLSVG 489 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHHHhCHHHHHHh--cccccccccccCC-CCCCHH
Confidence 578999999999999975 99999999731 233333222 23344443 4778899999764 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||||+++|+||+||||||+||++++..|.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecCC
Confidence 9999999999999999999999999999999999999999986 48999999999853 57899999999999999999
Q ss_pred HHHHHH
Q 005488 380 ASEAMA 385 (694)
Q Consensus 380 ~~~~~~ 385 (694)
|+|+++
T Consensus 567 ~~eL~~ 572 (588)
T PRK11174 567 YAELSQ 572 (588)
T ss_pred HHHHHh
Confidence 999874
No 27
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.3e-49 Score=462.62 Aligned_cols=349 Identities=23% Similarity=0.345 Sum_probs=255.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchh
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
++.++.++..++..+.+.|..++.+|||.++.+..+.+++.++..+......+.....+...........-..+.-+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888899999999999999999999999999999888766655443332222221112222222344445688
Q ss_pred hHHHhhhhhhhhhhhccccCCCCh----hhhc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 005488 89 AALSRASSASLGLSFSFTGFTMPP----DEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..|..+.|.+.+|..+.... ..+. ..+.+...+.++..+... .. ........|+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~-~~~~~~~~I~~ 481 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG----TL-APLNLEGLIEF 481 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC----CC-CCCCCCCeEEE
Confidence 888888888888888776554321 1111 111111111111111000 00 00112236999
Q ss_pred EeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+||+|+|+. .+++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++| .+|+|.+||+|+++ .++
T Consensus 482 ~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~p-~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 482 QDVSFSYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQP-TGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred EEEEEECCC-----CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cCC-CCCEEEECCEEHHhcCHHHHH
Confidence 999999831 2246799999999999999999999999999999999984 444 58999999999853 578
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGer 301 (694)
++|+||+||+.+|+ .|++|||.++.. ..+++ ++.++++..+ ++++.||.+|+. ...||||||
T Consensus 555 ~~i~~v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQk 623 (711)
T TIGR00958 555 RQVALVGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQK 623 (711)
T ss_pred hhceEEecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHH
Confidence 89999999999996 599999998632 12222 2333333333 466789999865 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
||++|||||+++|+|||||||||+||++++..+.+ .. ..+++|+|+++|+++. .+.+|+|++|++|++++.|+|+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999998 22 2358999999999863 5789999999999999999999
Q ss_pred HHHH
Q 005488 382 EAMA 385 (694)
Q Consensus 382 ~~~~ 385 (694)
|+++
T Consensus 699 eL~~ 702 (711)
T TIGR00958 699 QLME 702 (711)
T ss_pred HHHh
Confidence 9875
No 28
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-48 Score=459.49 Aligned_cols=345 Identities=21% Similarity=0.274 Sum_probs=248.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.++.-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-+..|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888899999999999999999888877776665444433321111111111111222222334456788
Q ss_pred HHHhhhhhhhhhhhccccCC----CChhhhccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFT----MPPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
.++..|..+.|.+..|..+. .|...+... +.....+.+++.+. ... ........++++
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~-~~~~~~~~I~~~ 455 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-----AKT-DPGKLSGAIEVD 455 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-----CcC-CCCCCCceEEEE
Confidence 88888888888777766432 222222111 11111111111000 000 011122369999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~ 229 (694)
||+|+|. ..++++|+|+|++|+|||.+||+|+||||||||+|+|+|. ++| .+|+|.+||+++++ .+|+
T Consensus 456 nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~p-~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 456 RVTFRYR------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ETP-ESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred EEEEEcC------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCC-CCCEEEECCEEcCcCCHHHHHh
Confidence 9999993 2346799999999999999999999999999999999984 444 58999999999863 5789
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerq 302 (694)
+||||+||+.+|+. |++|||.++.. .+.++ +.++++.. .++++.||.+|+.+ ..|||||||
T Consensus 528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige~G-~~LSGGQrQ 595 (686)
T TIGR03797 528 QLGVVLQNGRLMSG-SIFENIAGGAP------LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISEGG-GTLSGGQRQ 595 (686)
T ss_pred ccEEEccCCccCcc-cHHHHHhcCCC------CCHHH----HHHHHHHcCcHHHHHhccccccccccCCC-CCCCHHHHH
Confidence 99999999999975 99999998632 22222 33333333 24678899998764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++|||||+++|+||+||||||+||+.++.++.+.|+++ ++|+|+++|+++. .+.||+|++|++|++++.|+|++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999886 5899999999853 57899999999999999999999
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 671 Ll~ 673 (686)
T TIGR03797 671 LMA 673 (686)
T ss_pred HHh
Confidence 864
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.5e-49 Score=487.42 Aligned_cols=354 Identities=20% Similarity=0.256 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhhHHHhh
Q 005488 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (694)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (694)
++.+++.+..++|.++..+|||+|+.+....+++.+..........+.....+.....+..++.-..+.-++.|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999998877654433332222222221122233333455566789999988
Q ss_pred hhhhhhhhhccccCCC----C------------hhhhccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEE
Q 005488 95 SSASLGLSFSFTGFTM----P------------PDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (694)
Q Consensus 95 ~~~~~g~~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (694)
|..+.|.++.+..+.+ + .+..+..+.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 8888887655431111 1 11111112222222111111000000000000112236999999999
Q ss_pred EeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---------------------------
Q 005488 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (694)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~--------------------------- 211 (694)
|+. +++++||+|+||+|+||+.+||+||||||||||+++|.| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 832 234579999999999999999999999999999999996 56652
Q ss_pred --------------------------cccEEEECCEeCC----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC
Q 005488 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (694)
Q Consensus 212 --------------------------~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (694)
.+|+|++||++++ +.+|++||||+|++.||+ .|++|||.|+.. .
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 367999999999999996 599999999732 2
Q ss_pred CCHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005488 262 LTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (694)
Q Consensus 262 ~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~ 336 (694)
.+.++.. +.+++++. .|++++||.||+.+ ..||||||||++|||||+++|+|||||||||+||++++..|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHH--hCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2333322 23445554 45889999999654 5699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeC----CeEE-EecCHHHHHH
Q 005488 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (694)
Q Consensus 337 ~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~~~~~ 385 (694)
.|.++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 678999999999 9955 8999999974
No 30
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-47 Score=378.63 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+..|+ +++++|+|||++|++||++||+|||||||||||++|.|. .+ +.+|+|.+||.++.+
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cC-CCcceEEecccchhccch
Confidence 699999999983 467899999999999999999999999999999999984 44 458999999987742
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
.+|++|||++|++.|.+.+||.+|+..+...+.+. .+..++.+.++.+.|+.+|+.+.+.++. ..|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 46889999999999999999999999876433221 1233456677889999999988777654 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||||+|||+|||||+.+|+|++.|||+++|||.+++++++.|+++++ +|.|||++.|+... +.++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999986 49999999999764 67899999999999999
Q ss_pred EecCHHHHHHH
Q 005488 376 YFGKASEAMAY 386 (694)
Q Consensus 376 ~~G~~~~~~~~ 386 (694)
|.|+++++-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999886543
No 31
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=390.73 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE---eCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~---~~~~ 225 (694)
+|.++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|... ++.|.|.+||+ +.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 47888888876 46679999999999999999999999999999999999654 45899999999 5443
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
...++||||+|+..+|++|||.+||.|+...+ ....++.+.+.++.++|+.+.|++..+ +++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23578999999999999999999999998766 234456778899999999999987655 5789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||+. +++++||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999975 6899999999999999999999999
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 853
No 32
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.2e-47 Score=363.52 Aligned_cols=213 Identities=29% Similarity=0.472 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+|+||+++|. .+ +++|+||||.|++||++-|+||||||||||||+|.+... ++.|+|++||+++.+
T Consensus 1 mI~f~~V~k~Y~------~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP------GG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC------CC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccc
Confidence 489999999983 23 679999999999999999999999999999999998543 458999999999852
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
.+|++||+||||..|.++.||+||++|+.+.. ..++++.++++.++|+.+||.+..+. .+.+|||||+
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47999999999999999999999999998764 35677889999999999999987764 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.|||+.|||.. -+-.+-.|++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999954 3555668999999999987654
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.6e-46 Score=396.45 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=194.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..++++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 34679999999999999999999999999999999999653 458999999999753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..+++||||+|++.+++.+||+||+.|.+..+ ..+..+..+++.++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 45778999999999999999999999866543 2334445567889999999988777654 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999976 577899999999999999999999986
Q ss_pred H
Q 005488 385 A 385 (694)
Q Consensus 385 ~ 385 (694)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 4
No 34
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-48 Score=422.28 Aligned_cols=221 Identities=33% Similarity=0.560 Sum_probs=188.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..|+|+||+|+|. ++++||+++||+|++||.+||+|+|||||||++|+|.+ +.+ .+|+|.+||+++.
T Consensus 350 ~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~~ 419 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEVS 419 (591)
T ss_pred CcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhhC
Confidence 4699999999992 34569999999999999999999999999999999995 654 5899999999985
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
+.+|+.|||||||..||++ ||.+||.|+..-...+.+.+..++...++.+.. ++++++|.||+++. .||||||||
T Consensus 420 ~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY~T~VGerG~-~LSGGekQr 495 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGYQTLVGERGL-MLSGGEKQR 495 (591)
T ss_pred hHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccchhhHhhccc-ccccchHHH
Confidence 3689999999999999975 999999998532211112222233334555544 48899999998754 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
|+||||+++||+|+++|||||+||++++.++++.+.+.. .|+|+|++.|+.+ +...||+|++|++|++.+.|+|+|+
T Consensus 496 vslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 496 VSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred HHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHH
Confidence 999999999999999999999999999999999999944 5999999999976 4688999999999999999999999
Q ss_pred HH
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
++
T Consensus 573 l~ 574 (591)
T KOG0057|consen 573 LA 574 (591)
T ss_pred hh
Confidence 87
No 35
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.7e-48 Score=453.05 Aligned_cols=353 Identities=24% Similarity=0.369 Sum_probs=253.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++..+..++..+...|...+.+|+|.++.+....+++.+..........+.....+.........+.-..+.-+..|+
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677788888999999999999999999888888877665443332221111111101111111122333456788
Q ss_pred HHHhhhhhhhhhhhccccCCC----Chhhhcc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
.++..|..+.|.++.|..+.. |...+.. .+.....+.+++.+.. ......+.....|+|+
T Consensus 392 ~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~----~~~~~~~~~~~~I~~~ 467 (694)
T TIGR03375 392 YLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG----TRFLHRPRLQGEIEFR 467 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCCCCCCccceEEEE
Confidence 888888888888877764332 2222111 0111111111110000 0000011122469999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~ 229 (694)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++| .+|+|.+||.++.+ .+|+
T Consensus 468 ~vsf~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~p-~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 468 NVSFAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQP-TEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred EEEEEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCC-CCceEEECCEEhhhCCHHHHHh
Confidence 9999993 2346799999999999999999999999999999999984 444 58999999999863 5789
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
.|+||+|++.+|+. |++|||.++.. ..++++..+ .+++.++. +++..||.+|+.+ ..||||||||+
T Consensus 540 ~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~--lp~gl~T~i~e~G-~~LSgGQrQRl 610 (694)
T TIGR03375 540 NIGYVPQDPRLFYG-TLRDNIALGAP-----YADDEEILRAAELAGVTEFVRR--HPDGLDMQIGERG-RSLSGGQRQAV 610 (694)
T ss_pred ccEEECCChhhhhh-hHHHHHhCCCC-----CCCHHHHHHHHHHcChHHHHHh--CcccccceecCCC-CCCCHHHHHHH
Confidence 99999999999975 99999998631 123332222 23333433 4778899998764 56999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++. .+.||+|++|++|++++.|+|+|++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999999999999999999864 8999999999864 5889999999999999999999987
Q ss_pred HH
Q 005488 385 AY 386 (694)
Q Consensus 385 ~~ 386 (694)
+.
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 64
No 36
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.8e-48 Score=454.61 Aligned_cols=354 Identities=23% Similarity=0.289 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.+++-++..+...|...+.+|+|+++.+....+++.+...+......+.....+.........+.-..+.-+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677888899999999999999999888888876655444432221111111100111112222334456788
Q ss_pred HHHhhhhhhhhhhhccccCCC----ChhhhccC------------CCCCCCCCccccccccCC-CC-CCCCCCCCCeeEE
Q 005488 90 ALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRE-RP-KFQTEPTLPIYLK 151 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ 151 (694)
.++..|..+.|.+..|..+.. |...+... +.....+.+++....... .. .....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 888888888888877664332 22221110 111111111110000000 00 0000011234699
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~ 227 (694)
++||+|+|+ ..++++|+|+|++|++||.+||+||||||||||+|+|+|. ++| .+|+|.+||.++++ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~p-~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQP-WSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCC-CCcEEEECCEeHHHCCHHHH
Confidence 999999993 2346799999999999999999999999999999999984 444 58999999999853 57
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
|++||||+||+.+|+ .|++|||.++. + ..++++..+ .+++.++. ++++.||.+|+.+ ..|||||||
T Consensus 552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~~--lp~gl~t~i~e~G-~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDADLVRACKDAAIHDVITS--RPGGYDAELAEGG-ANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHHh--CcCcccceeccCC-CCCCHHHHH
Confidence 899999999999996 59999998752 1 123332222 12233332 4678899998754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++|||||+++|+|||||||||+||+.++..+.+.|++ .++|+|+++|+++. .+.||+|++|++|++++.|+|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999864 57799999999999999999999
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
No 37
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-47 Score=366.40 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=199.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|++.+++++|. ...++++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 478899999882 23359999999999999999999999999999999999765 458999999998753
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..|++||.++.+.-++..||++|||.|.+++. .+.+.+.++++.++.+.|+|.++.|+++| ++|.|+||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 47899999998889999999999999998875 46778889999999999999999999875 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|||||++||++++|||||||||..+...+.+.++++...|++||++||... ++..+||+|++|++|++++.|+++++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999999988999999999964 6888999999999999999999988764
No 38
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.1e-46 Score=400.12 Aligned_cols=221 Identities=24% Similarity=0.418 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+++||+++|..+ +..+++|+||||+|++||+++|+||||||||||+++|+|.. . +.+|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~-p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-R-PTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCceEEEECCEECCcCCH
Confidence 38999999998311 12357999999999999999999999999999999999854 3 458999999998752
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.|||+||++.+++.+||+||+.+..... ..++++.++++.++++.+||.+..|. ++.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 24678999999999999999999999976532 23455667789999999999887664 4578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
|||+|||||+.+|++||||||||+||+.++..+++.|++++++ |.|||++||++. .+.+.||+|++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 999999999975 46788999999999999999999
Q ss_pred HHHH
Q 005488 381 SEAM 384 (694)
Q Consensus 381 ~~~~ 384 (694)
+++.
T Consensus 226 ~~v~ 229 (343)
T TIGR02314 226 SEIF 229 (343)
T ss_pred HHHH
Confidence 8874
No 39
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-47 Score=368.67 Aligned_cols=234 Identities=24% Similarity=0.432 Sum_probs=198.8
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcccEEEECCEeC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~~~G~~~ 223 (694)
..++++||++.| +++.+|+|||+.|++++++|++|||||||||||+++. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 368999999998 5788999999999999999999999999999999998 44432 2579999999998
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
.. .+|++||.|||.|.-|| +|++||+.|+.++.. ...++.++.|+..|+...|.+--...+ ++...+||
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~LS 151 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL-HKSALGLS 151 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh-hCCccCCC
Confidence 42 57999999999999998 899999999987653 223667788888888877754222222 23456799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++++
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999999999999999984 789999999975 47789999999999999999
Q ss_pred cCHHHHHHHHHhcCCCCCCCCChHHHHH
Q 005488 378 GKASEAMAYFSSIGCSPQIAMNPAEFLL 405 (694)
Q Consensus 378 G~~~~~~~~f~~~G~~~p~~~npad~~~ 405 (694)
|+.+++. ..|.+.-..||+.
T Consensus 230 g~T~~iF--------~~P~~~~TedYis 249 (253)
T COG1117 230 GPTDKIF--------TNPKHKRTEDYIS 249 (253)
T ss_pred cCHHhhh--------cCccHHHHHHHhc
Confidence 9999873 4466666667754
No 40
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.7e-48 Score=453.61 Aligned_cols=352 Identities=21% Similarity=0.263 Sum_probs=252.7
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchh
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
++.++.+++-++..+...|...+.+|+|+++.+....+++.++.........+.....+.....+...+.-..+.-+..|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888999999999999999988888877666544433322111111110011111112234445688
Q ss_pred hHHHhhhhhhhhhhhccccCCC----ChhhhccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 005488 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..|..+.|.+..|..+.. |...+... +.....+.+++.+... .....+.....|++
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~----~~~~~~~~~~~I~~ 476 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK----KRTELNNLNGDIVI 476 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc----cccCCCCCCCcEEE
Confidence 8888888888888887765432 32222111 1111111111110000 00011112236999
Q ss_pred EeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhcc
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLK 228 (694)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~----~~~~ 228 (694)
+||+|+|. .++++|+|+|++|++||.+||+||||||||||+|+|+|. ++| .+|+|.+||.+++ +.+|
T Consensus 477 ~~vsf~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~p-~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 477 NDVSYSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQA-RSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred EEEEEEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CCC-CCcEEEECCEEHHHcCHHHHH
Confidence 99999982 245799999999999999999999999999999999984 444 5899999999985 3678
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
++||||+||+.+|+. |++|||.++.. + ..++++.. ..+++.++. ++++.||.+|+.+ ..||||||||
T Consensus 548 ~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~~--lp~gldt~i~e~G-~~LSgGQrQR 619 (708)
T TIGR01193 548 QFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIEN--MPLGYQTELSEEG-SSISGGQKQR 619 (708)
T ss_pred HheEEEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHHh--cccccCcEecCCC-CCCCHHHHHH
Confidence 999999999999975 99999998631 1 22332222 123334433 4678899998654 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+++|+||+||||||+||+.++..+.+.|+++ +|+|+|+++|+++. .+.||+|++|++|++++.|+|+++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999985 48999999999863 578999999999999999999998
Q ss_pred HH
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
++
T Consensus 696 ~~ 697 (708)
T TIGR01193 696 LD 697 (708)
T ss_pred Hh
Confidence 75
No 41
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=443.48 Aligned_cols=351 Identities=22% Similarity=0.297 Sum_probs=246.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.+++.++..+...|.....+++|+++.+....+++.+..........+..............+..-..+.-+..|+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777788888899999999999999999888888887665544432211110111101111111111223344666
Q ss_pred HHHhhhhhhhhhhhccccCC----CChhhhccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFT----MPPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
..+..|..+.|.+..+..+. .|...+... +.....+.+++.+ . ... ..+..+..++++
T Consensus 272 ~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~----~-~~~-~~~~~~~~i~~~ 345 (582)
T PRK11176 272 FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD----E-GKR-VIERAKGDIEFR 345 (582)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC----C-CCc-CCCCCCCeEEEE
Confidence 66666667777764443221 222222110 1111111110000 0 000 011122369999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~ 229 (694)
||+|+|+ ..++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++++ .+++
T Consensus 346 ~vsf~y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-~~-p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 346 NVTFTYP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-YD-IDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred EEEEecC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCceEEECCEEhhhcCHHHHHh
Confidence 9999983 2346799999999999999999999999999999999985 44 458999999999853 5688
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
.|+||+||+.+|+ .|++|||.++. ++..++++..+. ++++++. |+++.||.+|+.. ..||||||||+
T Consensus 418 ~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~~--lp~Gldt~ig~~g-~~LSGGqrQRi 489 (582)
T PRK11176 418 QVALVSQNVHLFN-DTIANNIAYAR----TEQYSREQIEEAARMAYAMDFINK--MDNGLDTVIGENG-VLLSGGQRQRI 489 (582)
T ss_pred hceEEccCceeec-chHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHHh--cccccCceeCCCC-CcCCHHHHHHH
Confidence 9999999999997 49999999863 222233322221 2233333 5778899998764 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|++++++
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999854 799999999985 46889999999999999999999986
Q ss_pred H
Q 005488 385 A 385 (694)
Q Consensus 385 ~ 385 (694)
+
T Consensus 567 ~ 567 (582)
T PRK11176 567 A 567 (582)
T ss_pred h
Confidence 4
No 42
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-45 Score=400.46 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=195.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~ 226 (694)
.|+++||+++| +++.+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.+||+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 59999999998 34579999999999999999999999999999999999543 468999999998853 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.+|||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..+. .+.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999987543 24556677889999999999887764 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++||++. ++..++|+|++|++|++++.|+++++.+
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5789999999999999999999998853
No 43
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=400.54 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=193.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~ 226 (694)
.|+++||+++|. +++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.+||+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 24579999999999999999999999999999999999543 468999999998853 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.||||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..+. .+++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHH
Confidence 4578999999999999999999999986532 23555667789999999999877664 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999875 899999999975 578999999999999999999999874
No 44
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-45 Score=378.58 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=187.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChh
Confidence 4789999998 24579999999999999999999999999999999999653 458999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
.+++.++||+|++.+++.+||+||+.++..... ....++..+++.++++.+||.+..++. +..|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 346789999999999999999999998753221 123445566788999999998766543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999874 899999999976 467889999999999999999988
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 763
No 45
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=398.59 Aligned_cols=217 Identities=25% Similarity=0.515 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~ 226 (694)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.+||+++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999543 468999999998853 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. .+..|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 4578999999999999999999999987543 24556677889999999999876654 467899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 578899999999999999999999874
No 46
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-47 Score=439.80 Aligned_cols=348 Identities=22% Similarity=0.320 Sum_probs=245.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.++..++.++...|..+..+|+|+|+.+..+.+++.+...+..+...+.....+...........-..+.-+..|+
T Consensus 188 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 267 (574)
T PRK11160 188 PGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAA 267 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888999999999999999999999888888887666554443321111111100011111111122234555
Q ss_pred HHHhhhhhhhhhhhccccCC-----CChhhh------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 005488 90 ALSRASSASLGLSFSFTGFT-----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~-----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
.+. .+..+.|.+.+|..+. .|...+ +..+..+..+.++..+. +...........|+|
T Consensus 268 ~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~-----~~~~~~~~~~~~i~~ 341 (574)
T PRK11160 268 GGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF-----PTTSTAAADQVSLTL 341 (574)
T ss_pred HHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----CcccCCCCCCCeEEE
Confidence 443 3555566655543221 111111 11111111111111110 000000112246999
Q ss_pred EeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+||+|+|+ .+++++|+|+|++++|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++++ .+|
T Consensus 342 ~~v~f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 342 NNVSFTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred EEEEEECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHH
Confidence 99999983 1235799999999999999999999999999999999984 44 458999999999863 578
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCccCCCCCHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~LSGGerq 302 (694)
+.|+||+||+.+|+. |++|||.++.. ..+ ++++.+.++..++ +++.||.+|+. ...|||||||
T Consensus 414 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrq 482 (574)
T PRK11160 414 QAISVVSQRVHLFSA-TLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQR 482 (574)
T ss_pred hheeEEcccchhhcc-cHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHH
Confidence 899999999999975 99999998632 122 2334555555554 56788999865 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+|+|
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999986 48999999999864 46799999999999999999999
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 560 l~~ 562 (574)
T PRK11160 560 LLA 562 (574)
T ss_pred HHh
Confidence 874
No 47
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5e-45 Score=396.52 Aligned_cols=218 Identities=26% Similarity=0.465 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc--cEEEECCEeCCh-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~--G~I~~~G~~~~~- 225 (694)
.|+++||+++| +++.+|+|+|++|++||+++|+|||||||||||++|+|... +.+ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCC
Confidence 58999999998 24569999999999999999999999999999999999543 458 999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.||||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..++ .+++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH-----LPAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC-----ChhhCCHHHHHHH
Confidence 24578999999999999999999999987543 24556667789999999999887765 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++. ++..++|+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 799999999975 5788999999999999999999998
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+..
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 853
No 48
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.3e-45 Score=391.70 Aligned_cols=220 Identities=28% Similarity=0.423 Sum_probs=194.2
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 469999999998 35579999999999999999999999999999999999653 458999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.|||++|++.+++.+||+||+.+....+ .....+..++++++++.++|++..++.+ ++||||||||+
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 45678999999999999999999999765443 1233445567788999999988777654 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 578899999999999999999999986
Q ss_pred HH
Q 005488 385 AY 386 (694)
Q Consensus 385 ~~ 386 (694)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 53
No 49
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.4e-45 Score=396.63 Aligned_cols=218 Identities=25% Similarity=0.440 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+++| +++++|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVP 82 (375)
T ss_pred ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999543 468999999998853
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..++.+|||+|++.+||++||+||+.|+...+ ..++.+.++++.++++.+||.+..+. .+.+|||||||||+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVa 154 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVA 154 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986532 23455666788999999999877765 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999875 899999999975 578899999999999999999999874
No 50
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-45 Score=366.53 Aligned_cols=221 Identities=28% Similarity=0.434 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|+++.|..+. .-.++|+||||+|.+||.++|+|+||||||||.++|+|... +.+|+|.++|++..+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCcccc
Confidence 689999999984221 12369999999999999999999999999999999999543 468999999988754
Q ss_pred --hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.|-+||||| .+.|..||++.|.-+... ...++. ++++.++++.+||++..- ++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHH
Confidence 3578899999998 488999999999876543 233333 344899999999975432 357889999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
||++|||||+.+|++||||||||+||+..+.+|++.|.++.++ +.|.|+++||.+ .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999865 789999999976 57889999999999999999999
Q ss_pred HHHHH
Q 005488 381 SEAMA 385 (694)
Q Consensus 381 ~~~~~ 385 (694)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 99864
No 51
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-45 Score=373.48 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.++++|++|+|. .. +.+|+|+|++|++||.++|+|+||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 589999999983 12 689999999999999999999999999999999999654 45899999999875
Q ss_pred -hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..+++++|||+|+| .+|. -||.|.+.|+.... .++.++.++++.++++.+|+.+.++. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25789999999997 5665 59999999997543 46677788999999999999987664 5689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
|||+||.+|+.+|++|+|||||+|||+..+.++++.++++.++ |+|+|++|||.. .+..+||++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999887 699999999975 57888999999999999999999
Q ss_pred HHHHH
Q 005488 381 SEAMA 385 (694)
Q Consensus 381 ~~~~~ 385 (694)
+++.+
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 87764
No 52
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9.2e-45 Score=393.64 Aligned_cols=220 Identities=25% Similarity=0.474 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~ 226 (694)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||||+|+|.. . +.+|+|.+||+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~-p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-H-QTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCcEEEECCEECCCCCH
Confidence 48999999998 3457999999999999999999999999999999999954 3 458999999998853 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
.++.++||+|++.+||++||+||+.|+...... ...+.++..+++.++++.++|++..+. ++.+|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 457899999999999999999999998653211 123455667789999999999876664 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999876 899999999975 578899999999999999999999875
No 53
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-46 Score=430.42 Aligned_cols=355 Identities=25% Similarity=0.332 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhhH
Q 005488 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (694)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (694)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+........+..-..+.-+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888899999999999999888888876655443322211111111111111122223344568888
Q ss_pred HHhhhhhhhhhhhccccCCC----ChhhhccCCC------CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 005488 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (694)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (694)
++..|..+.|.++++..+.. |...+..... ....++.+-++..+...+. ...+.....++++||+|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCCCCCCeEEEEEEEEEcC
Confidence 88888888888877764432 2221111000 0000011111100000000 01111123699999999983
Q ss_pred ecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEcc
Q 005488 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (694)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q 236 (694)
.+++++|+|+|++++|||.++|+||||||||||+++|+|.. + +.+|+|.+||+++.+ .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 23467999999999999999999999999999999999854 3 458999999998753 56889999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 005488 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (694)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~ 311 (694)
++.+|+. |++||+.+... ..++++. ....+++++.+ ++..||.+|+. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999975 99999986421 1222222 12234555544 66778888764 4679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
++|++|+|||||++||+.++..+.+.|+++.++|+|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998766899999999986 357899999999999999999998754
No 54
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-46 Score=441.78 Aligned_cols=351 Identities=23% Similarity=0.339 Sum_probs=251.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.+++-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455666677888889999999999999999998888887776554432221111111000011111122334456888
Q ss_pred HHHhhhhhhhhhhhccccCC----CChhhhcc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFT----MPPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
.++..|..+.|.+..|..+. .|...+.. .+.....+.+++.+. ......+.....|+++
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~~~~~~~~~~i~~~ 459 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-----AGLAALPELRGAITFE 459 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-----CCCCCCCCCCCeEEEE
Confidence 88888888888887776433 22222211 111111111111000 0000112223469999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~ 229 (694)
||+|+|. ..++++|+|+|++|+|||.+||+|+||||||||+|+|+|. ++ +.+|+|.+||+++++ .+|+
T Consensus 460 ~vsf~y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-~~-p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 460 NIRFRYA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-YT-PQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred EEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEehhhCCHHHHHH
Confidence 9999983 2345799999999999999999999999999999999985 44 458999999999863 5788
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
.|+||+|++.+|+ .|++|||.++. + ..+.++..+ .+++.++. ++++.||.+|+. ..+||||||||+
T Consensus 532 ~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri 602 (694)
T TIGR01846 532 QMGVVLQENVLFS-RSIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRI 602 (694)
T ss_pred hCeEEccCCeehh-hhHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHH
Confidence 9999999999997 59999998753 1 123322222 23334443 467789999865 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+|||||+++|+|||||||||+||+.++..+.+.|+++. .++|+|++||+++. .+.||+|++|++|++++.|++++++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999985 58999999999864 4679999999999999999999986
Q ss_pred H
Q 005488 385 A 385 (694)
Q Consensus 385 ~ 385 (694)
+
T Consensus 680 ~ 680 (694)
T TIGR01846 680 A 680 (694)
T ss_pred H
Confidence 4
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=368.26 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=186.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHH
Confidence 4789999998 34579999999999999999999999999999999999643 468999999988642 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||++..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4667999999999999999999999875432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999976 47788999999999999999988763
No 56
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.7e-44 Score=384.78 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHH
Confidence 69999999998 34579999999999999999999999999999999999653 458999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|++..++.+ ++||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHH
Confidence 34678999999999999999999998754432 1233444566788999999987777654 689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999878999999999976 5778899999999999999999998764
No 57
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=393.72 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=193.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34569999999999999999999999999999999999543 458999999998753
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..++.||||+|++.+||++||+||+.|+...+ ..++.+..+++.++++.++|.+..+. .+.+|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 35678999999999999999999999986543 23455667789999999999876654 46789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||||+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|++|||+. ++..++|+|++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999876 4899999999975 578999999999999999999999875
Q ss_pred H
Q 005488 385 A 385 (694)
Q Consensus 385 ~ 385 (694)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
No 58
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-47 Score=404.61 Aligned_cols=345 Identities=25% Similarity=0.321 Sum_probs=243.6
Q ss_pred HHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccc----hhhHHH
Q 005488 17 QLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS----SGAALS 92 (694)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 92 (694)
+--|+-+.+-.|.-+-|||+-|+++.-|...|...+.+-...+.|....-+- -+-.|..+-..++. .++..+
T Consensus 393 ~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnf----LN~~Qn~Ii~lgll~gsll~aY~V 468 (790)
T KOG0056|consen 393 SWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNF----LNIVQNGIIGLGLLAGSLLCAYRV 468 (790)
T ss_pred hhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhHHhhhhheeeeee
Confidence 3345555566677777999999999888888776554322222210000000 11122222111221 233344
Q ss_pred hhhhhhhhhhhccccCC----CChh-------hhc-----cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEE
Q 005488 93 RASSASLGLSFSFTGFT----MPPD-------EIA-----DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT 156 (694)
Q Consensus 93 ~~~~~~~g~~~~~~~~~----~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs 156 (694)
..+....|....|..|. +|.. .+. .++-|...+-++++.+.+ .-++.......++|+||+
T Consensus 469 t~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P----~a~pl~~~~G~i~fsnvt 544 (790)
T KOG0056|consen 469 TEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP----GAPPLKVTQGKIEFSNVT 544 (790)
T ss_pred eeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC----CCCCccccCCeEEEEEeE
Confidence 45566666655555333 2221 000 001111111112222111 111112233579999999
Q ss_pred EEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEE
Q 005488 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIG 232 (694)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~----~~~~~~i~ 232 (694)
|.|. +++++|+||||++.||+.+|+|||||+||||++++|. |+++. .+|.|.+||++++ ..+|+.||
T Consensus 545 F~Y~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 545 FAYD-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred EecC-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHHHHHHHHHhcC
Confidence 9993 5689999999999999999999999999999999999 67764 4899999999996 36899999
Q ss_pred EEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 005488 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (694)
Q Consensus 233 yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~ 312 (694)
.||||..||++ |+..||+|+......+.+..+.+.+.+++-+ ++++++++|+||+++.+ |||||||||+|||++++
T Consensus 616 VVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrI--l~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 616 VVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILK 691 (790)
T ss_pred cccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHH--hcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhc
Confidence 99999999975 9999999985332222222233333444433 67799999999998765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
+|.|++|||.||+||..++..|...|.+++. ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|++.
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999999986 8999999999986 45699999999999999999999975
No 59
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-44 Score=367.25 Aligned_cols=208 Identities=27% Similarity=0.475 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|. .+.+++|+|+|+++++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 2 IRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred eEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChh
Confidence 78999999982 122469999999999999999999999999999999999543 458999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
.+++.++|++|++.+++.+||+||+.++...+ .....+.++++.++++.+||++..++. +.+|||||||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 145 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQQ 145 (216)
T ss_pred HHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24678999999999999999999999876432 123344566788999999998766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999877999999999975 46678999999999975
No 60
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=390.20 Aligned_cols=221 Identities=24% Similarity=0.413 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+++||+++|.. ...++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 1 mi~i~~l~~~y~~----~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQ----GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCC----CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCH
Confidence 3789999999831 0124579999999999999999999999999999999999653 468999999998752
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.||||+|++.+++.+||+||+.+..... ..+..+..+++.++++.+||++..++ .+.+||||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~ 146 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADR-----YPAQLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 23678999999999999999999999876432 23444556778999999999876665 3568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999765 899999999975 46788999999999999999999
Q ss_pred HHHH
Q 005488 381 SEAM 384 (694)
Q Consensus 381 ~~~~ 384 (694)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 8875
No 61
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.7e-44 Score=370.67 Aligned_cols=219 Identities=30% Similarity=0.481 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHH
Confidence 4689999998 23569999999999999999999999999999999999653 458999999998753
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
. .++.++|++|++.+++.+||+||+.+......... ....+..++++++++.+||++..++ .++.||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR-----PAGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhC-----ChhhCC
Confidence 1 24569999999999999999999998754321110 0133445678899999999876654 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++. .+.+.||++++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999976 46788999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988763
No 62
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-44 Score=365.77 Aligned_cols=210 Identities=31% Similarity=0.538 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchh
Confidence 4789999998 23579999999999999999999999999999999999643 468999999998753 24
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+||+||+.++.... ........+++.++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999998899999999875432 123344556788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 467889999999999998765
No 63
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-44 Score=370.26 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~ 226 (694)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCc
Confidence 48999999998 23579999999999999999999999999999999999543 458999999998743 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
.++.++|++|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++. +..||||||||++
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 356799999999999889999999987543211 0012333456788899999997665543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 467889999999999999999988763
No 64
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.6e-46 Score=429.86 Aligned_cols=348 Identities=21% Similarity=0.268 Sum_probs=248.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.++..++..+...|...+.+|+|+++.+....+++.+..........+.....+...........-..+.-+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888899999999999999999988888877665443332221111111100011111112333445788
Q ss_pred HHHhhhhhhhhhhhccccCCC----Chhhhc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
.++..|..+.|.++++..+.. |...+. ..+.....+.+++.+.. + ...+.....|+++
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~----~--~~~~~~~~~I~~~ 317 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG----S--EPVPEGRGELDVN 317 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC----C--CCCCCCCCcEEEE
Confidence 888888888888877765432 221111 11111111111110000 0 0011122369999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~ 229 (694)
|++|+|+ .+++++|+|+|+++++|+.++|+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+++
T Consensus 318 ~v~~~y~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-~~-p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 318 IRQFTYP------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-FD-VSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred EEEEECC------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCCEEEECCEEHhhCCHHHHHh
Confidence 9999983 2345799999999999999999999999999999999985 44 458999999999753 5688
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerq 302 (694)
.++||+|++.+|+. |++|||.++.. ..++++ +.+.++.. .++++.||.+|+. ...|||||||
T Consensus 390 ~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~q 458 (569)
T PRK10789 390 RLAVVSQTPFLFSD-TVANNIALGRP-----DATQQE----IEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQ 458 (569)
T ss_pred heEEEccCCeeccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHH
Confidence 89999999999975 99999987631 123322 22222222 4577889998865 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++|||||+++|+||||||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|+|++|++|++++.|++++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999985 58999999999853 57799999999999999999999
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 864
No 65
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.6e-46 Score=431.10 Aligned_cols=344 Identities=19% Similarity=0.253 Sum_probs=236.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccce-eeecccccccccccccchh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (694)
..+..+++..+..+...|...+.+|+|+++.+....+++.+...+......+.....+.. .......+.-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777778888899999999999987776666655443332211000000000 0000000111111111122
Q ss_pred hHHHhhhhhhhhhhhccccCC----CChhhhc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 005488 89 AALSRASSASLGLSFSFTGFT----MPPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+. ...|..+.|.+..+..+. .|...+. ..+..+..+.++. +... . ..+.....+++
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~-~~~~---~---~~~~~~~~i~~ 343 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ-QYGN---D---DRPLQSGRIDI 343 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCCC---C---ccCCCCCeEEE
Confidence 22 345556666666655332 1222221 1111111111110 0000 0 01111235999
Q ss_pred EeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+||+|+|+ .++++|+|+|+++++||.+||+|+||||||||+|+|+|. ++| .+|+|.+||.++++ .++
T Consensus 344 ~~v~f~y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~p-~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 344 DNVSFAYR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YPL-TEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred EEEEEEeC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cCC-CCceEEECCEEhhhCCHHHHH
Confidence 99999983 235699999999999999999999999999999999985 444 58999999999863 678
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGer 301 (694)
++|+||+||+.+|+. |++|||.++. ..++ +++.++++.+| |+++.||.+|+.. ..||||||
T Consensus 415 ~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g-~~LSGGqr 482 (592)
T PRK10790 415 QGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQG-NNLSVGQK 482 (592)
T ss_pred hheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCC-CCCCHHHH
Confidence 999999999999976 9999999863 1222 23444444444 4677899998753 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ....||+|++|++|++++.|+|+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 799999999985 46789999999999999999999
Q ss_pred HHHH
Q 005488 382 EAMA 385 (694)
Q Consensus 382 ~~~~ 385 (694)
++++
T Consensus 560 ~L~~ 563 (592)
T PRK10790 560 QLLA 563 (592)
T ss_pred HHHh
Confidence 9863
No 66
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=392.46 Aligned_cols=218 Identities=28% Similarity=0.482 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~ 226 (694)
.|+++||+++| +++.+|+|+|++|++||+++|+|||||||||||++|+|.+. +.+|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 48999999998 34579999999999999999999999999999999999643 458999999998753 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.|+||+|++.+|+++||+||+.|+...+ .....+.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986532 234455667889999999998766653 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|+++++..
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5778999999999999999999998753
No 67
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=378.41 Aligned_cols=238 Identities=31% Similarity=0.439 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
+|+++||+|+|..+ ....+.+|+|||++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 1 mi~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 38999999998311 0112469999999999999999999999999999999999653 45899999999874
Q ss_pred ----hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 005488 225 ----KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (694)
Q Consensus 225 ----~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (694)
..+++.+|||+|++ .+|+ .||.||+.|+.... ..++++.++++.++++.+||. +..++ .++.||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 13567899999986 5675 59999999876432 234556677889999999995 34443 457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46688999999999999999
Q ss_pred cCHHHHHH---HHHhcCCCCCCCCChH
Q 005488 378 GKASEAMA---YFSSIGCSPQIAMNPA 401 (694)
Q Consensus 378 G~~~~~~~---~f~~~G~~~p~~~npa 401 (694)
|+++++.. .+...|..+|.....+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 99998753 3455677666544333
No 68
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.1e-45 Score=347.70 Aligned_cols=214 Identities=25% Similarity=0.440 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|.+++|.|+|. . .==.++++|+.||++||+||||||||||||+|+|... +.+|+|++||++.+. ..
T Consensus 2 l~L~~V~~~y~--------~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYG--------H--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeC--------c--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcc
Confidence 56788999982 1 2236789999999999999999999999999999543 458999999999863 45
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
.|-++.+|||.+||.++||.+|+.++.... -.-.++.+++++.++.++||..+.+.. +.+|||||||||++|
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPG---LKLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCcc---cccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 778999999999999999999999986422 122456677899999999999877754 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|+|+++-+||+||||+|+|||.-+.++..++.+++++ +.|++++||+|+ ++.+.+|+++++++|||.+.|+.++..
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999999864 889999999997 478999999999999999999998865
No 69
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3e-44 Score=367.91 Aligned_cols=216 Identities=27% Similarity=0.512 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHh
Confidence 4789999998 34569999999999999999999999999999999999653 468999999998642
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++. +..||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 2 2457999999999999999999999865432 123344556788999999998766653 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877999999999976 578899999999999999999988763
No 70
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-44 Score=368.11 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.9
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++|..+ ...+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 7899999998210 011379999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++.+++.+|++||+.+....+ ........+.+.++++.+||++..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23577999999999999899999999875432 123444556788999999998766643 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999875 899999999975 467889999999999999999988
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 764
No 71
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-44 Score=363.12 Aligned_cols=210 Identities=30% Similarity=0.573 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.+||+++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHc
Confidence 4789999988 24569999999999999999999999999999999999643 4689999999988655677
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+|+++..++. +.+||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999999999999875432 123344556788999999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998764
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2e-44 Score=368.27 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCCh-
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~~~G~~~~~- 225 (694)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4789999988 345799999999999999999999999999999999996511 3468999999998742
Q ss_pred -----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
..++.++|++|++.++ .+||+||+.++...+. .....+.++++.++++.+||.+..+..+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 2467899999999888 7899999998754321 11222345678899999999876554320 36899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+.+.||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999976 46778999999999999999987
Q ss_pred HH
Q 005488 381 SE 382 (694)
Q Consensus 381 ~~ 382 (694)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
No 73
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-44 Score=364.44 Aligned_cols=216 Identities=30% Similarity=0.470 Sum_probs=183.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
|+++|++++|... ...+++|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .++
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~-~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGP 73 (220)
T ss_pred CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc-ccC
Confidence 4789999998210 112579999999999999999999999999999999999643 458999999998753 467
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
.++||+|++.+++.+||+||+.+....+ ........+++.++++.+||.+..++. +..||||||||++||||
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 8999999999998899999999875432 123344556788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEe--CCeEEEecCHH
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (694)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+.||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
No 74
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.5e-46 Score=427.97 Aligned_cols=353 Identities=20% Similarity=0.279 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhhH
Q 005488 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (694)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (694)
.+..+++..+..+...+...+.+|+|+++.+....+++.+..........+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778889999999999999998888877766554333221100001111011111112223444567777
Q ss_pred HHhhhhhhhhhhhccccCC----CChhhhccCCC------CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 005488 91 LSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (694)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (694)
++..|..+.|.+..+..+. .|...+..... ....++.+-+...+.........+.....++++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 8888887888777666422 22222111100 0000010111100000000000011123699999999983
Q ss_pred ecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEEEEcc
Q 005488 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (694)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q 236 (694)
..++++|+|+|+++++||.++|+|+||||||||+++|+|.. + +.+|+|.+||.+++ +.+++.++||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 12457999999999999999999999999999999999854 3 45899999999875 357888999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
++.+|+. |++|||.++.. +..+++ ++.++++..| |+++.||.+|+. ...||||||||++|||+
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~~----~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGRT----EQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCCC----CCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999965 99999997631 122332 2333444333 467789999876 35799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
++++|+|++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|+++..|++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999999999999985 4799999999985 46889999999999999999999986
No 75
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.9e-44 Score=364.20 Aligned_cols=216 Identities=29% Similarity=0.496 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++||+++|. ...+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHH
Confidence 57899999982 112579999999999999999999999999999999999543 458999999998742 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
+++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.++|.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 5677999999999998999999999875432 123334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999976 699999999986 46678999999999999999998764
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-44 Score=376.37 Aligned_cols=232 Identities=27% Similarity=0.465 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|..+ ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCc
Confidence 38999999998311 0112579999999999999999999999999999999999653 458999999998752
Q ss_pred ---hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCH
Q 005488 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSG 298 (694)
..++.||||+|++ .++ ..||+||+.|+.... ..++++..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 479999999875432 245566667889999999996 44443 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999975 46688999999999999999
Q ss_pred cCHHHHHH---HHHhcCCCCC
Q 005488 378 GKASEAMA---YFSSIGCSPQ 395 (694)
Q Consensus 378 G~~~~~~~---~f~~~G~~~p 395 (694)
|+++++.+ .+...|+..|
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 227 GTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CCHHHHHhCHHHHHHcCCCCC
Confidence 99998753 2334455443
No 77
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.6e-44 Score=363.17 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++||+++|..+ ...+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHH
Confidence 7899999998311 011269999999999999999999999999999999999543 468999999998753 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..+.. +..||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 5678999999999999899999998865432 123445567788999999998766653 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999877999999999975 467889999999999998764
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-44 Score=368.76 Aligned_cols=220 Identities=29% Similarity=0.485 Sum_probs=184.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|. +++++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHh
Confidence 46899999882 12579999999999999999999999999999999999643 458999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
..++.++|++|++.+++.+||+||+.++...... .........+++.++++.++|.+..++ .+.+||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCC
Confidence 2456799999999999989999999876421100 001122345678889999999765554 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999986 4677999999999999999
Q ss_pred ecCHHHHH
Q 005488 377 FGKASEAM 384 (694)
Q Consensus 377 ~G~~~~~~ 384 (694)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99988763
No 79
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=8.3e-44 Score=368.86 Aligned_cols=218 Identities=30% Similarity=0.510 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 23569999999999999999999999999999999999643 458999999988641
Q ss_pred ---------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 ---------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
..++.++||+|++.+++.+||+||+.++..... ....++..+++.++++.+||.+..++ .++.|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhC
Confidence 245679999999999988999999988643111 12334455678899999999866554 35689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4678899999999999999
Q ss_pred ecCHHHHH
Q 005488 377 FGKASEAM 384 (694)
Q Consensus 377 ~G~~~~~~ 384 (694)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
No 80
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-45 Score=426.74 Aligned_cols=351 Identities=23% Similarity=0.335 Sum_probs=243.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..+..+++.++.++...+.....+++|.++.+..+.+++.+..........+.....+........+..-..+.-+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888899999999999999998877777766554433321110110111111111122222333345677
Q ss_pred HHHhhhhhhhhhhhccccCC----CChhhhccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFT----MPPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
.++..|..+.|.++.+..+. .|...+... +.....+.++..+ ..+.....+.....++++
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~~~~~~~~~I~~~ 338 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR----DPPGAIDLGRVKGAVEFD 338 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC----CCCCCCCcCCCCCeEEEE
Confidence 77777777777766554332 121111110 0000000000000 000000011112369999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~ 229 (694)
||+|+|+ +++++|+|+|++++|||.++|+|+||||||||+|+|+|. ++| .+|+|.+||.++.+ .+++
T Consensus 339 ~vsf~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-~~p-~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 339 DVSFSYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV-FDP-QSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred EEEEEeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-cCC-CCCEEEECCEEhhhCCHHHHHh
Confidence 9999983 224699999999999999999999999999999999985 444 58999999999863 5788
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
.|+||+|++.+|+ .|++|||.++. + +.++++..+ ..++.++. +++..||.+|+. ...||||||||+
T Consensus 410 ~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~~--lp~gldt~i~~~-g~~LSgGq~QRi 480 (588)
T PRK13657 410 NIAVVFQDAGLFN-RSIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIER--KPDGYDTVVGER-GRQLSGGERQRL 480 (588)
T ss_pred heEEEecCccccc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--CcccccchhcCC-CCCCCHHHHHHH
Confidence 9999999999996 49999999862 1 122322221 12233332 467789988865 456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|++++.|++++++
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999885 4899999999985 46889999999999999999999986
Q ss_pred H
Q 005488 385 A 385 (694)
Q Consensus 385 ~ 385 (694)
+
T Consensus 558 ~ 558 (588)
T PRK13657 558 A 558 (588)
T ss_pred H
Confidence 3
No 81
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.2e-44 Score=360.98 Aligned_cols=210 Identities=27% Similarity=0.505 Sum_probs=181.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++|++++| +++++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcc
Confidence 4789999988 23579999999999999999999999999999999999653 458999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+|+.+..+.. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 467999999999998899999999875432 123444556788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 467789999999999999876
No 82
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.5e-44 Score=379.04 Aligned_cols=217 Identities=25% Similarity=0.459 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChH
Confidence 48999999998 34679999999999999999999999999999999999643 468999999998753
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++. ++.||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876543 123444556788999999998877754 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999965 799999999976 5788999999999999999999999865
No 83
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-43 Score=366.08 Aligned_cols=217 Identities=29% Similarity=0.510 Sum_probs=187.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~-~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 2 IEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-E-ITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCceEEEECCEECCcCChh
Confidence 7899999998 2457999999999999999999999999999999999954 3 458999999998752
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||++..+.. +..||||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQR 144 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHH
Confidence 346679999999999988999999988642111 123444556788999999997666643 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999976 46678999999999999999998876
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
No 84
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-44 Score=367.17 Aligned_cols=216 Identities=30% Similarity=0.547 Sum_probs=186.4
Q ss_pred EEEEeEEEEEeecccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
++++||+++| ++ +.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~--------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRY--------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEe--------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCCh
Confidence 4689999998 23 569999999999999999999999999999999999643 458999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCCHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++.+++.+||+||+.+..... ....++..+++.++++.+||.+ ..++ .+..|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34678999999999999899999999875432 1234445667889999999975 4443 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|+|++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999865 899999999975 467889999999999999999988
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=375.87 Aligned_cols=231 Identities=27% Similarity=0.457 Sum_probs=190.8
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|... ....+++|+|||++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 3 ITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECcccccc
Confidence 8999999998311 0112569999999999999999999999999999999999653 458999999998741
Q ss_pred ----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 005488 226 ----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (694)
..++.||||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+||. +..++ .++.|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSg 148 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSG 148 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCH
Confidence 3457899999986 4664 69999999875432 234555566789999999996 44454 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||||++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999976 57788999999999999999
Q ss_pred cCHHHHHH---HHHhcCCCCC
Q 005488 378 GKASEAMA---YFSSIGCSPQ 395 (694)
Q Consensus 378 G~~~~~~~---~f~~~G~~~p 395 (694)
|+++++.+ .+...+..+|
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 228 GTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred CCHHHHhcCHHHHHHCCCCCC
Confidence 99988742 2334455443
No 86
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.9e-44 Score=380.46 Aligned_cols=207 Identities=29% Similarity=0.456 Sum_probs=183.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---hccCcEEEEccCCcCCCCCC
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~lT 245 (694)
++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. ..++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 458999999998743 35678999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005488 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (694)
|+||+.+.+..+ ..+..+..++++++++.+||.+..++. ++.|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 233445566789999999998777664 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 005488 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (694)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (694)
||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++...
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999987654
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=5.3e-44 Score=368.63 Aligned_cols=219 Identities=29% Similarity=0.464 Sum_probs=184.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|. .++++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGK 72 (243)
T ss_pred eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHH
Confidence 78999999881 14579999999999999999999999999999999999643 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
.+++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+||.+..+. .+..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLS 147 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 2467799999999999989999999875321000 001123345678889999999766554 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4668899999999999999
Q ss_pred ecCHHHH
Q 005488 377 FGKASEA 383 (694)
Q Consensus 377 ~G~~~~~ 383 (694)
.|+++++
T Consensus 227 ~~~~~~~ 233 (243)
T TIGR02315 227 DGAPSEL 233 (243)
T ss_pred cCCHHHh
Confidence 9998775
No 88
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.2e-44 Score=363.05 Aligned_cols=214 Identities=28% Similarity=0.499 Sum_probs=182.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHH
Confidence 4789999988 24579999999999999999999999999999999999653 458999999998742
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHH
Q 005488 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
. .++.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++++..++ .++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQ-----LAGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhC-----chhhCCHHHHHH
Confidence 1 35679999999999999999999998754321 122345566778777 46655554 346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999999999998875
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 4
No 89
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.1e-46 Score=423.13 Aligned_cols=324 Identities=22% Similarity=0.271 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhhH
Q 005488 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (694)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (694)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888889999999999999999999999888876665544433211111111001111111112233456777
Q ss_pred HHhhhhhhhhhhhccccCCC----Chhhh------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEe
Q 005488 91 LSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTD 154 (694)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 154 (694)
++..|..+.|.+.++..+.. |...+ +..+..+..+.+++...... +.....+.....|+|+|
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~~I~~~~ 339 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV--PAAGALGLGKPTLELRD 339 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC--CCCcccCCCCceEEEEE
Confidence 77777777777666654321 11111 11111111111111110000 00000111223699999
Q ss_pred EEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---hccCcE
Q 005488 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKI 231 (694)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~~~~~i 231 (694)
|+|+|+ +++++|+|+|++|++||.+||+||||||||||+|+|+| +++| .+|+|.+||+++++ ++|++|
T Consensus 340 vsf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g-~~~p-~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 340 LSFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG-LLDP-LQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred EEEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc-CCCC-CCcEEEECCEEhhhHHHHHHhhe
Confidence 999983 23469999999999999999999999999999999998 4544 58999999998863 577899
Q ss_pred EEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 232 ~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
+||+|++.+|+. |++|||.++.. ..++++..+ .+++.++ .|+++.||.+|+.+ ..||||||||++|
T Consensus 411 ~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G-~~LSGGQrQRiai 481 (529)
T TIGR02868 411 SVFAQDAHLFDT-TVRDNLRLGRP-----DATDEELWAALERVGLADWLR--SLPDGLDTVLGEGG-ARLSGGERQRLAL 481 (529)
T ss_pred EEEccCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHcCCHHHHH--hCcccccchhcccc-CcCCHHHHHHHHH
Confidence 999999999975 99999998631 123322222 1223333 35788999999754 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (694)
||||+++|+||+||||||+||++++..|.+.|+++. +++|+|+++|++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999999999999999874 489999999985
No 90
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=8.9e-44 Score=390.55 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++.+
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 35679999999999999999999999999999999999653 458999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
.+++++|||+|++.+++.+||+||+.++....... ........++++++++.+||.+..++. +++||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45778999999999988999999999864321100 011234556789999999998777654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||+++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877999999999976 47789999999999999999999985
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 4
No 91
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=377.98 Aligned_cols=233 Identities=27% Similarity=0.419 Sum_probs=191.8
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+|.|..+ ...++++|+|||++|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEccccc
Confidence 369999999998311 0113469999999999999999999999999999999999643 458999999987632
Q ss_pred ------------------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 005488 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (694)
Q Consensus 226 ------------------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (694)
.+++.++||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999987 5776 49999999875321 234455566788999999996 334
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 005488 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (694)
Q Consensus 285 ~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (694)
+ +.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||
T Consensus 171 ~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 E-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred c-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 4 345789999999999999999999999999999999999999999999999877999999999975 4668899
Q ss_pred EEEEEeCCeEEEecCHHHHHH---HHHhcCCCCC
Q 005488 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (694)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~---~f~~~G~~~p 395 (694)
+|++|++|++++.|+++++.. .+...|..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999988743 2334455443
No 92
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.6e-43 Score=371.17 Aligned_cols=218 Identities=24% Similarity=0.446 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccCh
Confidence 69999999998 34579999999999999999999999999999999999643 458999999998742
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.++|++|++.+++.+||.||+.+...... ........+++.+.++.+||.+..+.. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 235679999999999999999999998643211 123344456778899999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999975 46788999999999999999999
Q ss_pred HHHH
Q 005488 381 SEAM 384 (694)
Q Consensus 381 ~~~~ 384 (694)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8764
No 93
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=370.01 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|. ..+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 13469999999999999999999999999999999999543 458999999998752
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.+|||+|++. .+..+||+||+.|+.... .....+.++++.++++.+||.+..++ .+..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHH
Confidence 34678999999973 334579999999875321 23444555678899999999876665 456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999975 46688999999999999999998754
No 94
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-43 Score=371.03 Aligned_cols=220 Identities=24% Similarity=0.447 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999831 123469999999999999999999999999999999999653 458999999998852
Q ss_pred -hccCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++||+|++ .+++.+||+|||.|+.... ..++++..+++.++++.+||.+..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 3567899999997 3666789999999875432 244555667889999999998766643 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||+|++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 9999999999764 4 5799999999999999999988
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+.+
T Consensus 227 ~~~ 229 (279)
T PRK13650 227 LFS 229 (279)
T ss_pred HHc
Confidence 653
No 95
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-43 Score=357.83 Aligned_cols=206 Identities=32% Similarity=0.535 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHH
Confidence 4789999998 24579999999999999999999999999999999999653 468999999998753 34
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+||+||+.+....+. . .+++++++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 6679999999999999999999998754321 1 234678889999998766653 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+.+|++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999976 466789999999999998765
No 96
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.1e-43 Score=360.31 Aligned_cols=209 Identities=32% Similarity=0.545 Sum_probs=176.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|... ...+++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchh
Confidence 4789999998210 011579999999999999999999999999999999999643 458999999998742
Q ss_pred ---h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ---~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
. .++.++|++|++.+++.+||+||+.++...+ ........+++.++++.+||.+..++. ++.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 2467999999999999999999999876432 122334456788999999998766543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++.. + ..||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 58999999999864 4 48999999999974
No 97
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.7e-43 Score=363.66 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-----ccEEEECCEeC
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPY 223 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~-----~G~I~~~G~~~ 223 (694)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +|+|.++|+++
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 1 AIEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CEEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEc
Confidence 37899999998 23469999999999999999999999999999999999653 33 89999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccC
Q 005488 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFV 293 (694)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~ 293 (694)
.. ..++.++|++|++.+++ +||+||+.+....+. .....+..+++.++++.+||. +..++ .+
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 142 (247)
T TIGR00972 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SA 142 (247)
T ss_pred cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Cc
Confidence 42 24678999999999998 899999998754321 123344556788999999997 44443 45
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|+
T Consensus 143 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGE 220 (247)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999977 589999999976 4678899999999999
Q ss_pred EEEecCHHHHH
Q 005488 374 LLYFGKASEAM 384 (694)
Q Consensus 374 iv~~G~~~~~~ 384 (694)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99999998764
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.7e-43 Score=360.42 Aligned_cols=216 Identities=31% Similarity=0.553 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 2 LEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChh
Confidence 7899999998 24579999999999999999999999999999999999643 458999999998742 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 143 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEI 143 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3457999999999888899999998865432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|+++|++.. + ..+|++++|++|++++.|+++++.+
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999985 58999999999864 4 4599999999999999999887753
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=363.15 Aligned_cols=218 Identities=27% Similarity=0.535 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 58999999998 24579999999999999999999999999999999999643 458999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++.+||+||+.+..... .....++.+.+++++++.+|+.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 23567999999999998899999998864322 112334455678899999999765554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 47789999999999999999998876
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
No 100
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.4e-43 Score=382.63 Aligned_cols=207 Identities=27% Similarity=0.469 Sum_probs=183.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc----cCcEEEEccCCc
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDV 239 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~----~~~i~yV~Q~~~ 239 (694)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|.. . +.+|+|.++|+++.. .+ ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-E-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-C-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4567999999999999999999999999999999999854 3 468999999999853 23 678999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005488 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (694)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 319 (694)
+|+++||+||+.|+.... ...+++..+++.++++.+||++..++ ++..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 23456677889999999999876664 4578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 320 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||||++||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|++++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 899999999975 4778999999999999999999998753
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=364.68 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 24579999999999999999999999999999999999653 458999999987631
Q ss_pred --------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccC
Q 005488 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (694)
Q Consensus 226 --------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~ 290 (694)
.+++.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 346789999999999999999999987542111 123445567788999999997643 33
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++. .+...||+|++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999877999999999976 4667899999999
Q ss_pred CCeEEEecCHHHHH
Q 005488 371 KGSLLYFGKASEAM 384 (694)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (694)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
No 102
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-44 Score=394.22 Aligned_cols=216 Identities=32% Similarity=0.534 Sum_probs=184.8
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~-- 224 (694)
+..++.+|++|.|+ +.+++++|+|+++++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.+
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23389999999999999999999999999999999999653 46899999999875
Q ss_pred --hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCccCCCC
Q 005488 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (694)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~L 296 (694)
..+|++++||+|+|.+|+. |++|||.++.. ..+++ .+.+++++.|| +++.|+.+|+. .++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige~-G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGEG-GAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhccC-CCCC
Confidence 3689999999999999975 99999998732 12333 34444444433 56788999865 4679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|+|++|||+.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999987 6999999999864 57799999999999999
Q ss_pred ecCHHHHHH
Q 005488 377 FGKASEAMA 385 (694)
Q Consensus 377 ~G~~~~~~~ 385 (694)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999853
No 103
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.8e-45 Score=418.98 Aligned_cols=350 Identities=22% Similarity=0.267 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhhH
Q 005488 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (694)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (694)
.+..++..++..+...|...+.+|+++++.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667788889999999999999999988887777765544332211100000000000000111112233456777
Q ss_pred HHhhhhhhhhhhhccccCCC----ChhhhccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEe
Q 005488 91 LSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTD 154 (694)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 154 (694)
++..|..+.|.+.++..+.. |...+... +.....+.++..+.. ......+.....++++|
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 339 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP----ADAPELPNVKGAVEFRH 339 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC----ccCCCCCCCCCeEEEEE
Confidence 77777777777666553221 22221111 100111100000000 00000111123699999
Q ss_pred EEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCc
Q 005488 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSK 230 (694)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~~ 230 (694)
|+|+|+ +++++|+|+|+++++||.++|+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+++.
T Consensus 340 v~~~y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 340 ITFEFA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-YD-PTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred EEEECC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-CC-CCCCEEEECCEEhhhCCHHHHHhh
Confidence 999982 224689999999999999999999999999999999985 43 458999999998753 57889
Q ss_pred EEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 231 i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
++||+|++.+|+ .|++|||.++.. ..++++..+.. ++.+. .+++..||.+|+. ...||||||||++
T Consensus 411 i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~ 481 (585)
T TIGR01192 411 IATVFQDAGLFN-RSIRENIRLGRE-----GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLA 481 (585)
T ss_pred eEEEccCCccCc-ccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHH
Confidence 999999999996 599999998631 12333322222 22232 3466778888764 5679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|||||+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+++++++
T Consensus 482 lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 482 IARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999999885 48999999999854 47799999999999999999999864
No 104
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.7e-43 Score=358.14 Aligned_cols=221 Identities=44% Similarity=0.741 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh-h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~~~G~~~~~-~ 226 (694)
.+.|+||+++|... +..+++|+|+|++|++||+++|+||||||||||+|+|+|.+.. .+.+|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 47899999998321 1147899999999999999999999999999999999996531 0458999999998753 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
.++.++|++|++.+++.+||+||+.++.....+.....+...+++++ .++.+++.+..++ .++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHH
Confidence 57789999999999999999999998765432222222233334555 7888888765554 45689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999855688999999999999999875
No 105
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.9e-43 Score=377.19 Aligned_cols=228 Identities=24% Similarity=0.425 Sum_probs=191.5
Q ss_pred eeEEEEeEEEEEeeccc-----ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 005488 148 IYLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~ 222 (694)
..|+++||+++|..+.. ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 36999999999842110 00123579999999999999999999999999999999999653 458999999998
Q ss_pred CCh-------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 005488 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (694)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (694)
+.. .+++.|+||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..+ .+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~ 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RY 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CC
Confidence 742 2467899999998 588899999999987543211 235566677888999999994 3333 46
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
+++|||||||||+|||||+.+|++||+||||+|||..++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~ 237 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL 237 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999765 899999999976 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 005488 372 GSLLYFGKASEAM 384 (694)
Q Consensus 372 G~iv~~G~~~~~~ 384 (694)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998875
No 106
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-43 Score=359.23 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCH
Confidence 59999999998310 112579999999999999999999999999999999999643 468999999998742
Q ss_pred ----hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
.. ++.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||++..++. +..|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999875432 123344556788999999998766543 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. + ..+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999864 4 4468999999999998876
Q ss_pred H
Q 005488 380 A 380 (694)
Q Consensus 380 ~ 380 (694)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-43 Score=362.39 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 48999999998 2356999999999999999999999999999999999965321 358999999998742
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
.+++.|+|++|++.+++.+||+||+.++...+.. .....+..+++.++++.+||.+..+.. -+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 3567899999999888889999999987542210 112344456788999999986422111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|+++|++. .+.+.||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999976 466789999999999999999998
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 874
No 108
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.3e-45 Score=350.82 Aligned_cols=220 Identities=26% Similarity=0.493 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|..+|+.++| +.+++++|||+++++||+++++|||||||||.+.++.|... +++|+|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58899999988 56789999999999999999999999999999999999653 468999999999874
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..|..|||+||++..|..|||+|||......+.. +..+++++.++++++++|++.+.+++. ...||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHH
Confidence 2355699999999999999999999988776532 233456667789999999999988864 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|+++-|+.. +....|||.+++++|+++.+|+++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999977 47799999999999999999999998
Q ss_pred HH
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
.+
T Consensus 227 ~~ 228 (243)
T COG1137 227 VN 228 (243)
T ss_pred hc
Confidence 63
No 109
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.1e-43 Score=356.11 Aligned_cols=206 Identities=33% Similarity=0.516 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 78999999882 23579999999999999999999999999999999999643 458999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
.+++.++|++|++.+++.+||+||+.+....+ .......++++.++++.++|.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQ 144 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24578999999999998899999999875432 123344556788999999998655543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++...||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999877999999999975 5677899999999985
No 110
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-43 Score=372.70 Aligned_cols=221 Identities=25% Similarity=0.461 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++||+++|..+. ....++|+|||++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecccccc
Confidence 389999999983210 112469999999999999999999999999999999999653 45899999987541
Q ss_pred ------------------------hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc
Q 005488 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (694)
Q Consensus 225 ------------------------~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (694)
..+++.||||+|++ .++ ..||+|||.|+.... ...+++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467899999985 455 469999999876432 245556677899999999
Q ss_pred CCC-ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 005488 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (694)
Q Consensus 279 gL~-~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (694)
||+ +..+. .+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 44553 45789999999999999999999999999999999999999999999999877999999999975
Q ss_pred HHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
.+.+.||||++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999998875
No 111
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=9.2e-45 Score=418.88 Aligned_cols=353 Identities=24% Similarity=0.335 Sum_probs=244.7
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchh
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+.++..++..++..+...+.....+|+|+++.+....+++.+..........+....................+.-+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888999999999999999999988888887766543333221110000000000011111122333467
Q ss_pred hHHHhhhhhhhhhhhccccCCC----ChhhhccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 005488 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..+..+.|.+..+..+.. |...+... +.....+.+++.+... .+.. ........|++
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~-~~~~~~~~i~~ 340 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKT-LPVPLRGEIEF 340 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCcc-CCcCCCceEEE
Confidence 7777667777776655543221 22111110 1111111111100000 0000 00111236999
Q ss_pred EeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+||+|+|+. ..++++|+|+|++++|||.++|+||||||||||+|+|+|. ++ +.+|+|.+||.++++ .++
T Consensus 341 ~~v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl-~~-p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 341 EQVNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF-YD-PQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred EEEEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999831 1236799999999999999999999999999999999995 43 458999999999853 567
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGer 301 (694)
+.++|+||++.+|+. |++|||.++. + ..++ +++.+.++..| +++..||.+|+. ...||||||
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~ 482 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQR 482 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHH
Confidence 889999999999964 9999998853 1 1222 23344444443 355678888764 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....+|+|++|++|++++.|+++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 4899999999985 46789999999999999999999
Q ss_pred HHHH
Q 005488 382 EAMA 385 (694)
Q Consensus 382 ~~~~ 385 (694)
++.+
T Consensus 560 ~l~~ 563 (576)
T TIGR02204 560 ELIA 563 (576)
T ss_pred HHHH
Confidence 8753
No 112
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.3e-43 Score=361.02 Aligned_cols=220 Identities=28% Similarity=0.360 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999964213468999999998742
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCC-CCCH
Q 005488 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (694)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LSG 298 (694)
. .+..++||+|++.+++.+|++||+.+....... ......+..+++.++++.+||++ ..++. +. +|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234589999999999999999999886532110 01122334567889999999973 44433 33 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEe
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (694)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999976 45566 799999999999999
Q ss_pred cCHHHH
Q 005488 378 GKASEA 383 (694)
Q Consensus 378 G~~~~~ 383 (694)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 998754
No 113
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=360.94 Aligned_cols=215 Identities=24% Similarity=0.431 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCH
Confidence 69999999998 24579999999999999999999999999999999999543 468999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++.+|+.+||+||+.++.... ...+..+.+.++++.+ ++.+..++ .+..|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864221 1222344566777777 46554443 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999975 4778999999999999999999988
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
No 114
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=370.43 Aligned_cols=222 Identities=23% Similarity=0.430 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++++||++.|..+ ....+++|+|||++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48999999998311 0112569999999999999999999999999999999999543 458999999998742
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 005488 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (694)
.+++.||||+|++ .+++ .||+||+.|+.... ..+..+..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 5665 59999999875432 234555667789999999996 45554 457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976 4899999999975 4678899999999999999
Q ss_pred ecCHHHHHH
Q 005488 377 FGKASEAMA 385 (694)
Q Consensus 377 ~G~~~~~~~ 385 (694)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988653
No 115
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-43 Score=360.49 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccc
Confidence 48999999998 24579999999999999999999999999999999999643 46899999999762
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
...++.++|++|++.+++.+||+||+.+.. ... .....+..+++.++++.+||++..++. +..||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 134678999999999999999999997532 211 123344456788999999998666653 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+.+|++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999976 46678999999999999999
Q ss_pred cCHHHH
Q 005488 378 GKASEA 383 (694)
Q Consensus 378 G~~~~~ 383 (694)
|++++.
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
No 116
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.6e-43 Score=363.32 Aligned_cols=217 Identities=31% Similarity=0.494 Sum_probs=186.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 4789999998 23579999999999999999999999999999999999653 458999999988631
Q ss_pred -------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005488 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (694)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (694)
..++.++|++|++.+++.+||+||+.++.... ......+..+.+.++++.+|+.+..+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~ 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----M 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----C
Confidence 24678999999999999899999999864211 112344455678899999999766554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+++|++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999999875 899999999976 46688999999999
Q ss_pred CeEEEecCHHHHH
Q 005488 372 GSLLYFGKASEAM 384 (694)
Q Consensus 372 G~iv~~G~~~~~~ 384 (694)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 117
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=362.69 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.+... +.+|+|.++|+++.
T Consensus 6 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 369999999998 2356999999999999999999999999999999999965421 24899999999863
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCC
Q 005488 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (694)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~ 294 (694)
...++.++|++|++.+++ +||+||+.++..... .......++++.+.++.+++. +..++ .++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 134678999999998885 899999998754321 112334456778888888873 23343 457
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCI 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 799999999976 46788999999999999
Q ss_pred EEecCHHHHH
Q 005488 375 LYFGKASEAM 384 (694)
Q Consensus 375 v~~G~~~~~~ 384 (694)
+..|+++++.
T Consensus 228 ~~~g~~~~~~ 237 (254)
T PRK14273 228 EEESSTDELF 237 (254)
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 118
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=363.70 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~~~G~~~~ 224 (694)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++.
T Consensus 11 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 369999999988 245699999999999999999999999999999999996532 135899999999863
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
. ..++.++|++|++.+++ +||+||+.+..... ..+.+..++++.++++.+++.+...... +..+..|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCH
Confidence 2 34677999999999887 89999999875432 1233444566888999998842211111 234568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 899999999975 466889999999999999999
Q ss_pred CHHHHH
Q 005488 379 KASEAM 384 (694)
Q Consensus 379 ~~~~~~ 384 (694)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998763
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-43 Score=362.48 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.6
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeC
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~~~G~~~ 223 (694)
|+.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3469999999998 23569999999999999999999999999999999999642 12 3589999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
.. .+++.++|++|++.+|+ .||+||+.++...+. ....+...+++.++++.+|+.+...... +..++.||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34678999999999997 599999998754321 1123344567888899999854222211 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999976 46688999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
No 120
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-43 Score=355.67 Aligned_cols=208 Identities=30% Similarity=0.574 Sum_probs=179.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++||+++| +++++|+|+||++++| +++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHH
Confidence 4789999998 2346999999999999 999999999999999999999643 458999999988742 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
+++.++|++|++.+|+.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 5678999999999999999999999865432 123334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999986 689999999976 466789999999999998765
No 121
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-43 Score=368.48 Aligned_cols=218 Identities=29% Similarity=0.526 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++||+++|. .++.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcc
Confidence 699999999982 23569999999999999999999999999999999999543 46899999999873
Q ss_pred --hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 225 --KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 225 --~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
..+++.+||++|++ .++ ..||+||+.++.... ..+..+..++++++++.+||.+..++ .++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDK-----PTHCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhC-----CcccCCHHH
Confidence 13567899999997 344 479999999865422 23445556678999999999876654 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +.+.||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 8999999999764 667899999999999999999
Q ss_pred HHHHHH
Q 005488 380 ASEAMA 385 (694)
Q Consensus 380 ~~~~~~ 385 (694)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 988754
No 122
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4e-43 Score=355.12 Aligned_cols=207 Identities=34% Similarity=0.530 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++|. +.+++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHH
Confidence 46899999882 12579999999999999999999999999999999999543 458999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++.+++.+|++||+.+....+ ....++..+++.++++.+||++..++. +.+|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24577999999999999999999999875432 123444556788999999998766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999777999999999975 46678999999999974
No 123
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-43 Score=365.70 Aligned_cols=217 Identities=22% Similarity=0.430 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
+|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 1 ml~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccC
Confidence 37899999998 24569999999999999999999999999999999999653 45899999999873
Q ss_pred --hhccCcEEEEccCCcC-CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 225 --KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 225 --~~~~~~i~yV~Q~~~l-~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..+++.++||+|++.+ +...|+.||+.+..... ....++..+++.++++.+||.+..++. +..||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 142 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQK 142 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHH
Confidence 1345679999999752 33458999998865432 223444456788899999997766543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999975 466889999999999999999998
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 222 ~~~ 224 (271)
T PRK13638 222 EVF 224 (271)
T ss_pred HHh
Confidence 864
No 124
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-42 Score=374.23 Aligned_cols=227 Identities=25% Similarity=0.430 Sum_probs=191.6
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~~~G~~~~~ 225 (694)
..|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +. .+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCc
Confidence 369999999998421 134579999999999999999999999999999999999653 32 38999999998742
Q ss_pred ----h---cc-CcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 005488 226 ----S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (694)
Q Consensus 226 ----~---~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (694)
. +| +.|+||+|++ .++|.+|+.+++........ .....+..+++.++++.+||++..+. -+.++++
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~ 161 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHE 161 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCccc
Confidence 1 22 4799999998 68899999999987654321 23455666788999999999764332 2356789
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|||||||||+|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||+. .+.+++|+|++|++|++
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRT 240 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999976 46678999999999999
Q ss_pred EEecCHHHHH
Q 005488 375 LYFGKASEAM 384 (694)
Q Consensus 375 v~~G~~~~~~ 384 (694)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (330)
T PRK09473 241 MEYGNARDVF 250 (330)
T ss_pred EEECCHHHHH
Confidence 9999999885
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=366.45 Aligned_cols=228 Identities=25% Similarity=0.450 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|. ...+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 599999999982 123569999999999999999999999999999999999653 458999999998752
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.|+|++|++. ++..+||+|||.++.... ....++..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34678999999973 566789999999875432 234455567789999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
++|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++.. + ..||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876 8999999999764 4 4699999999999999999988
Q ss_pred HHH---HHHhcCCCC
Q 005488 383 AMA---YFSSIGCSP 394 (694)
Q Consensus 383 ~~~---~f~~~G~~~ 394 (694)
+.. .+...+..+
T Consensus 227 ~~~~~~~~~~~~~~~ 241 (279)
T PRK13635 227 IFKSGHMLQEIGLDV 241 (279)
T ss_pred HhcCHHHHHHcCCCC
Confidence 753 333444443
No 126
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-43 Score=368.67 Aligned_cols=221 Identities=27% Similarity=0.434 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|..+ ....+.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48899999998310 0012579999999999999999999999999999999999653 468999999998732
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 005488 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (694)
..++.++|++|++ .++ .+||+||+.++.... ....++..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhC-----CcccCC
Confidence 2456799999997 455 579999999875432 234455566789999999996 45554 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 47789999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9998864
No 127
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=373.70 Aligned_cols=227 Identities=26% Similarity=0.386 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcccEEEECCEeCCh-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~~~G~~~~~- 225 (694)
.|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 48999999998321 12256999999999999999999999999999999999965422 358999999998742
Q ss_pred ---h----ccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 226 ---S----LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 ---~----~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
. .++.|+||+|++ .++|.+||.+++........ ....++.++++.++++.+||.+..+ .-+.++++|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1 124699999998 47889999999876654321 2345566778999999999975221 123467899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.+ .|.|+|++|||+. .+.+.+|+|++|++|+++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 4899999999976 466889999999999999
Q ss_pred EecCHHHHH
Q 005488 376 YFGKASEAM 384 (694)
Q Consensus 376 ~~G~~~~~~ 384 (694)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999999875
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=360.74 Aligned_cols=224 Identities=24% Similarity=0.388 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~- 224 (694)
.|+++||+++| +++++|+|+|++|++||+++|+||||||||||+++|+|.+... +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 58999999998 2356999999999999999999999999999999999965321 24899999999874
Q ss_pred -----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..+++.++|++|++.+++.+||+||+.++...+. .....+...+++.++++.+|+.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 1346789999999999999999999998754321 0012334455678889999885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 799999999976 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 98864
No 129
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-42 Score=358.59 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCH
Confidence 48999999998 23569999999999999999999999999999999999653 458999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
..++.++|++|++.+++.+||+||+.+....... . ....++.++++.++++.+|+.+..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1345699999999999999999999986432100 0 011234456788999999998766643 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 789999999975 467889999999999999999
Q ss_pred CHHHHH
Q 005488 379 KASEAM 384 (694)
Q Consensus 379 ~~~~~~ 384 (694)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
No 130
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-43 Score=367.29 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=184.2
Q ss_pred EEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 005488 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (694)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~ 226 (694)
.++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhh
Confidence 456777766 45679999999999999999999999999999999999653 458999999998742 1
Q ss_pred ----ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 227 ----~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
.++.++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++. +..|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999998999999999875432 123344556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 899999999975 467889999999999999999998
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 864
No 131
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=361.70 Aligned_cols=213 Identities=31% Similarity=0.482 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
+|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 ml~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~ 69 (255)
T PRK11248 1 MLQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PG 69 (255)
T ss_pred CEEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CC
Confidence 37899999998 23579999999999999999999999999999999999643 458999999998753 33
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
..++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++ .+..||||||||++|||
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIAR 141 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHH
Confidence 56899999999999899999998865432 12344455678899999999766554 35689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEe--CCeEEEecCHH
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (694)
+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||++++|+ +|+++..++.+
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999864 5899999999976 4778899999998 59999988754
No 132
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=365.54 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+++||+++|. +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ml~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 1 MIRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred CEEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCcccc
Confidence 378999999982 23569999999999999999999999999999999999643 468999999998742
Q ss_pred --hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++. .+..+||+||+.+..... .....+..+++.++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (274)
T PRK13644 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQ 143 (274)
T ss_pred HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHH
Confidence 34678999999975 355689999999875432 234455566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++.. + ..||++++|++|++++.|++++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998779999999999864 5 6699999999999999999988
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
+.
T Consensus 222 ~~ 223 (274)
T PRK13644 222 VL 223 (274)
T ss_pred Hh
Confidence 64
No 133
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1e-42 Score=355.26 Aligned_cols=215 Identities=28% Similarity=0.451 Sum_probs=175.7
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|..+ ..+.++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchh
Confidence 7899999998210 011369999999999999999999999999999999999543 468999999998742
Q ss_pred ---hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccCCCCCH
Q 005488 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (694)
..++.++|++|++ .+++.+||+||+.+....... . ...+..+. +.++++.+++. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3467899999998 467789999999886543211 1 11222222 35788999985 34443 3568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|+++..
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999975 46678999999999999876
Q ss_pred c
Q 005488 378 G 378 (694)
Q Consensus 378 G 378 (694)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
No 134
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.6e-43 Score=352.82 Aligned_cols=207 Identities=32% Similarity=0.551 Sum_probs=177.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchh
Confidence 4789999998 23569999999999999999999999999999999999643 468999999998731
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++.+|++||+.++..... ....++..+++.++++.+|+++..++. +..||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999998999999998643111 123344556788999999997766553 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++. ++.+.||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 46688999999999974
No 135
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=388.12 Aligned_cols=215 Identities=31% Similarity=0.543 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.++++||+|+|+ +.+.++|+|+|+++++||.+||+|+||||||||+++|+|- ++ +.+|+|.+||.++.
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-~~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-WD-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-cC-CCCCeeeECCcChhhCCh
Confidence 699999999993 3456799999999999999999999999999999999984 44 45899999999875
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCC
Q 005488 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (694)
+.+++.|++++|...+|.+ |+++||.++.. + .++ +.+.+.++++|| +++.||.+|+.+ +.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~----~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G-~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLANP----D-ASD----EELWAALQQVGLEKLLESAPDGLNTWLGEGG-RRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcCC----C-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhccCC-CcCC
Confidence 2478899999999999975 99999998742 2 233 334555565554 456778888654 6799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||+|++|.++++|||||.|||+.++.++++.|.+-++ |||+|++||+... .+.||+|++|++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999999775 9999999999875 588999999999999999
Q ss_pred cCHHHHHH
Q 005488 378 GKASEAMA 385 (694)
Q Consensus 378 G~~~~~~~ 385 (694)
|+++++++
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
No 136
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=358.92 Aligned_cols=223 Identities=22% Similarity=0.406 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCC-CcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l--~~~-~~~G~I~~~G~~~~ 224 (694)
+.|+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|.. ..+ +.+|+|.++|+++.
T Consensus 2 ~~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 368999999998 3457999999999999999999999999999999999852 222 14899999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
. ..++.++|++|++.+++ .|++||+.++...+. ....+..++.+.++++.+||.+...... +..+..|||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 149 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSG 149 (250)
T ss_pred cccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCH
Confidence 2 34667999999999887 599999998754321 1122334566888999999865322211 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++. .+.+.||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 4899999999976 467889999999999999999
Q ss_pred CHHHHH
Q 005488 379 KASEAM 384 (694)
Q Consensus 379 ~~~~~~ 384 (694)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14245 228 DTKKIF 233 (250)
T ss_pred CHHHHh
Confidence 999874
No 137
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=352.92 Aligned_cols=220 Identities=26% Similarity=0.477 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++.+||+++| +.-.+++|||+++++||+++|+||||||||||+|+|+|.+ . +++|+|.++|++++.
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~-P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-K-PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-c-CCCceEEECCcccCCCCH
Confidence 58899999988 5678999999999999999999999999999999999954 3 458999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (694)
..|..|+--||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+.. .
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~ 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----G 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----h
Confidence 246678999999999999999999999865331 11 1124556778899999999999999765 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
+||+||+||+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||++|-||.. .++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999874 699999999976 5899999999999999
Q ss_pred EEEecCHHHHH
Q 005488 374 LLYFGKASEAM 384 (694)
Q Consensus 374 iv~~G~~~~~~ 384 (694)
++..|+|+++.
T Consensus 228 ~IAeG~P~eV~ 238 (250)
T COG0411 228 VIAEGTPEEVR 238 (250)
T ss_pred CcccCCHHHHh
Confidence 99999999975
No 138
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=360.59 Aligned_cols=220 Identities=23% Similarity=0.369 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCH
Confidence 59999999998 34579999999999999999999999999999999999543 468999999998742
Q ss_pred -h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCc
Q 005488 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (694)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (694)
. .+..++|++|++.+++.+||+||+.++...... ... ...+..+++.++++.+||.+..++
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----- 149 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR----- 149 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC-----
Confidence 2 244689999999999999999999986431100 000 112234567888999999766554
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 005488 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
.++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|+
T Consensus 150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 35689999999999999999999999999999999999999999999999875 899999999975 4678899999999
Q ss_pred CCeEEEecCHHHHH
Q 005488 371 KGSLLYFGKASEAM 384 (694)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (694)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
No 139
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-42 Score=353.74 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=176.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|.. ..+.+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~----~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQE----GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccC----CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHh
Confidence 789999999831 1112569999999999999999999999999999999999643 458999999998742
Q ss_pred h---cc-CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ~---~~-~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||++..+.. +..||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 23 57999999999998899999999865432 122334456788999999997665543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + +.+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999764 8999999999863 4 558999999999975
No 140
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=372.01 Aligned_cols=227 Identities=26% Similarity=0.434 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccc--ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-
Q 005488 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~--~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~- 225 (694)
.|+++||++.|..+.. ...+.+.+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 6999999999843210 00123579999999999999999999999999999999999653 458999999998742
Q ss_pred ------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCC
Q 005488 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 296 (694)
.+++.|+||+|++ .+++.+||.+++....... ....+.+..+++.++++.+||.+ ..+ .++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYD-----RYPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccC
Confidence 2467899999998 5889999999998765432 12345566778999999999963 344 456899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||||||||+|||||+.+|++||+||||++||..++.+|++.|+++.++ |.|+|++|||+. .+.++||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999976 466789999999999999
Q ss_pred EecCHHHHHH
Q 005488 376 YFGKASEAMA 385 (694)
Q Consensus 376 ~~G~~~~~~~ 385 (694)
+.|+++++.+
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999998753
No 141
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=361.56 Aligned_cols=217 Identities=27% Similarity=0.472 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCH
Confidence 48999999998 24579999999999999999999999999999999999643 458999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.++|++|++.+++.+||+||+.+..... ....++..+++.++++.+||.+..++. +..||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233445678899999998766654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 305 ~IA~aL~------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
+|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.+.||+|++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 56899999999975 46678999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
No 142
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.3e-43 Score=352.37 Aligned_cols=202 Identities=29% Similarity=0.506 Sum_probs=171.9
Q ss_pred EEEeEEEEEeecccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hcc
Q 005488 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (694)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-~~~ 228 (694)
+++||+++| ++ +++|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~--------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSY--------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEe--------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhh
Confidence 368899988 22 579999999999999999999999999999999999543 468999999998753 345
Q ss_pred CcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 229 ~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
+.++|++|++. .+..+||+||+.+..... . ...+++.++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 67999999974 233579999998865321 1 1125678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999877999999999976 466789999999999975
No 143
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=364.00 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|..+ ....+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccccc
Confidence 38899999998311 0012469999999999999999999999999999999999643 468999999998742
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 005488 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (694)
.+++.|+|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.+ ..+. .+..||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3467799999997 4665 69999999865332 1234445567888999999963 3443 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 46678999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998874
No 144
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.5e-42 Score=353.35 Aligned_cols=208 Identities=27% Similarity=0.489 Sum_probs=178.9
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|. +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChh
Confidence 78999999882 23579999999999999999999999999999999999543 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
.+++.++|++|++.+++.+||+||+.+....+ ....++..+++.++++.+++.+..++ .+..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHH
Confidence 14678999999999888899999999875432 12344445667889999999876554 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. ++...||++++|++|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999877899999999976 466789999999999975
No 145
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=362.97 Aligned_cols=216 Identities=31% Similarity=0.545 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++|. +.+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccch
Confidence 78999999982 23469999999999999999999999999999999999653 458999999998731
Q ss_pred --hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
.+++.|+|++|++ .++ .+||.||+.++.... ....++..+++.++++.+||.+..++. ++.||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred HHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 2467899999997 345 469999998864321 233445566788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999975 466789999999999999999999
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 223 ~~~ 225 (275)
T PRK13639 223 EVF 225 (275)
T ss_pred HHh
Confidence 875
No 146
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=361.08 Aligned_cols=218 Identities=24% Similarity=0.430 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++|. ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 699999999982 122469999999999999999999999999999999999643 458999999998742
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++. +++..|+++|+.+..... ....+...+++.++++.+|+.+..++ .++.||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHH
Confidence 45678999999984 677789999998875422 12344455678889999999876654 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. .+|+|++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999765 8999999999864 54 499999999999999999988
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 64
No 147
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.5e-44 Score=389.38 Aligned_cols=360 Identities=26% Similarity=0.340 Sum_probs=274.1
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhhHHHh
Q 005488 14 KSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSR 93 (694)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 93 (694)
-+|.....+..++.+.-+.|+++|-+-.+.+.++..+.-....+..+.-....|.+.-.|+.+-+.+|.--+-.|+-|+-
T Consensus 190 A~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi 269 (580)
T COG4618 190 ASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVI 269 (580)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEE
Confidence 35555566666666777778998988888888888877666666655545555666566888888888888889999999
Q ss_pred hhhhhhhhhhccccCC----CChhhhccC-CCC-----CCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEeecc
Q 005488 94 ASSASLGLSFSFTGFT----MPPDEIADS-KPF-----SDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKG 163 (694)
Q Consensus 94 ~~~~~~g~~~~~~~~~----~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~~~ 163 (694)
.+.++.|++..=+-+. .|.+...+. +.| ++..+.+-+...+...+. ...|.....|.++++++.
T Consensus 270 ~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~----- 343 (580)
T COG4618 270 KGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLTAA----- 343 (580)
T ss_pred cCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeeeec-----
Confidence 9988888876543211 122221111 110 112222222222221111 223334457999999983
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCc
Q 005488 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV 239 (694)
Q Consensus 164 ~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~ 239 (694)
+++.++++|+|+||.+.+||.++|+||||||||||.|+|.|.. ++.+|.|.+||.++++ .+-++|||.|||-.
T Consensus 344 -PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 344 -PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred -CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 3567789999999999999999999999999999999999954 3568999999998853 56788999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005488 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (694)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 319 (694)
||+. ||.|||.-......++.+-.+.+.+.++|++- .|++++||.||+.. ..||||||||+++||||..||.+++|
T Consensus 421 LF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 421 LFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred ecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 9986 99999973221111111223344556778774 56999999999764 56999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHH
Q 005488 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (694)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (694)
|||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++|++..+|+.+|+++...
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999999999999999999999997 578899999999999999999999998764
No 148
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=357.98 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~~~G~~~~~-- 225 (694)
.++++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|.... ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 245799999999999999999999999999999999996432 2468999999998752
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+|+ .||+||+.++...+. ........++++.++++.++|.+...... +..++.||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 35678999999999997 699999998753321 00012334556788999999953221111 23457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||++. .+.+.+|++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999999886
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
No 149
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=379.78 Aligned_cols=225 Identities=24% Similarity=0.404 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeeccc----------------ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 005488 149 YLKFTDVTYKVILKGM----------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~----------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~ 212 (694)
.|+++||++.|..+.. ...+...+|+|+||+|++||+++|+||||||||||+|+|+|.+. +.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~ 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PT 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CC
Confidence 4788888877632110 00122348999999999999999999999999999999999543 45
Q ss_pred ccEEEECCEeCCh----h----ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005488 213 GGSITYNDHPYSK----S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (694)
Q Consensus 213 ~G~I~~~G~~~~~----~----~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (694)
+|+|.++|+++.. . .++.++||+|++.+|+++||+||+.++...+ ....++..+++.++++.+||.+..
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhh
Confidence 8999999998742 1 2357999999999999999999999986543 233445567788999999998766
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhcc
Q 005488 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKF 363 (694)
Q Consensus 285 ~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~ 363 (694)
++ .++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++|
T Consensus 159 ~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~ 232 (400)
T PRK10070 159 HS-----YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIG 232 (400)
T ss_pred hc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhC
Confidence 64 4578999999999999999999999999999999999999999999999975 4899999999975 477899
Q ss_pred CEEEEEeCCeEEEecCHHHHH
Q 005488 364 DKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 364 D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|+|++|++|++++.|+++++.
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CEEEEEECCEEEecCCHHHHH
Confidence 999999999999999998875
No 150
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=372.36 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcccEEEECCEeCCh-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~~~G~~~~~- 225 (694)
.|+++||+++|..+ .+.+.+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999998421 13457999999999999999999999999999999999965421 358999999998742
Q ss_pred ---h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 005488 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (694)
Q Consensus 226 ---~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (694)
. .++.|+||+|++. +.+.+||.+++.+......... ....+..+++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 112344567889999999975322 123467
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
.+|||||||||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||+||||+. .+.+++|+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999874 899999999975 467889999999999
Q ss_pred eEEEecCHHHHH
Q 005488 373 SLLYFGKASEAM 384 (694)
Q Consensus 373 ~iv~~G~~~~~~ 384 (694)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998874
No 151
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=360.11 Aligned_cols=224 Identities=25% Similarity=0.421 Sum_probs=186.2
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeC
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~ 223 (694)
...|+++|++++| +++++|+|+|++|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++
T Consensus 11 ~~~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYY--------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEe--------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3479999999998 234699999999999999999999999999999999996531 2 3589999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
.. .+++.++|++|++.+++ .||+||+.+...... ..+.++..+++.++++.+++.+...... +..+..||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999999887 799999998754221 1334445567889999999853211111 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46678999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988864
No 152
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=361.47 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=180.8
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .+
T Consensus 11 ~~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~ 79 (257)
T PRK11247 11 TPLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EA 79 (257)
T ss_pred CcEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-Hh
Confidence 359999999998 34579999999999999999999999999999999999643 45899999998764 45
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..+. .+..||||||||++||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGqkqrl~la 145 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANE-----WPAALSGGQKQRVALA 145 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHH
Confidence 6789999999999988999999988521 0 123567889999999876554 3568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+.+.||+|++|++|++++.|+.+
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999865 4899999999976 466889999999999999888753
No 153
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=361.17 Aligned_cols=220 Identities=26% Similarity=0.455 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCH
Confidence 48999999998 34579999999999999999999999999999999999643 468999999998642
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++.+||.||+.++...... .........+++.++++.+||.+..++. +..||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999988889999999986321000 0111223455678899999998766653 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999877999999999976 47789999999999999999998876
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 3
No 154
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2e-42 Score=361.22 Aligned_cols=221 Identities=27% Similarity=0.484 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~~-- 225 (694)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|..... ..+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 4 IIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred EEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 69999999998 3457999999999999999999999999999999999965321 236999999988632
Q ss_pred -------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 005488 226 -------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (694)
Q Consensus 226 -------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (694)
..++.++|++|++.+++.+||+||+.+......+. ....++.++++.++++.+||.+..+.. +
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 150 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----V 150 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----c
Confidence 23567999999999999999999998764211000 011233456788999999998766653 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g 229 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQG 229 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999999864 899999999975 467889999999999
Q ss_pred eEEEecCHHHH
Q 005488 373 SLLYFGKASEA 383 (694)
Q Consensus 373 ~iv~~G~~~~~ 383 (694)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999998763
No 155
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.2e-42 Score=361.73 Aligned_cols=226 Identities=23% Similarity=0.427 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecc-cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
.|+++||+++|.... ....+++.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 489999999983210 000124679999999999999999999999999999999999543 468999999998742
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 005488 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (694)
.+++.++|++|++ .+++.+||+||+.+..... .........+++.++++.+||. +..+. .+..||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1456799999997 4677899999998764321 1123334556788999999995 44454 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 4667899999999999999
Q ss_pred ecCHHHHH
Q 005488 377 FGKASEAM 384 (694)
Q Consensus 377 ~G~~~~~~ 384 (694)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998874
No 156
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=362.90 Aligned_cols=218 Identities=30% Similarity=0.525 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++++||+++|. +.+.+|+|+||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 489999999982 13469999999999999999999999999999999999543 468999999998742
Q ss_pred -hccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++||+|++. ++ ..||.||+.+..... ....+...+++.++++.+||.+..++. ++.|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 35678999999973 45 579999998865421 234455566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999976 467899999999999999999999
Q ss_pred HHHH
Q 005488 382 EAMA 385 (694)
Q Consensus 382 ~~~~ 385 (694)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
No 157
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=357.02 Aligned_cols=223 Identities=22% Similarity=0.408 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~~ 225 (694)
.|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.+.. | +.+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHF--------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEe--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 58999999998 245699999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+++.+||+||+.++.... ......+.++++.+.++.+++.+...... +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 34678999999999999899999998765322 11223344566888999999854221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 689999999975 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 98864
No 158
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=362.70 Aligned_cols=220 Identities=27% Similarity=0.460 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ccEEEECCEeCCh-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~--~G~I~~~G~~~~~- 225 (694)
.|+++|+++.|. +..+++|+|+|++|++||+++|+||||||||||+++|+|.+. |.. +|+|.++|+++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998852
Q ss_pred ---hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.+||++|++. +++.+||+||+.|..... ..+.++..+++.++++.+||.+..++ .++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHH
Confidence 34678999999974 566789999999865322 23455666788999999999876654 4578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999865 8999999999864 4 57999999999999999999
Q ss_pred HHHHH
Q 005488 381 SEAMA 385 (694)
Q Consensus 381 ~~~~~ 385 (694)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
No 159
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=345.55 Aligned_cols=217 Identities=27% Similarity=0.463 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+..| +..++|++||+++++||+++|+|+||+|||||||+|+|... +.+|+|.++|++++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCH
Confidence 68999999988 45789999999999999999999999999999999999653 458999999999963
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGerq 302 (694)
..|..|+||||...+|+.|||+|||..++..+.. ++......+++.+.|- |.+..++. ...|||||+|
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~-----aG~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQR-----AGTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCc-----ccCCChHHHH
Confidence 3577899999999999999999999998654321 1111222556666662 34444443 3479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++.. ...+.+||.++|.+|+|++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999976 779999988865 477899999999999999999999
Q ss_pred HHHH
Q 005488 382 EAMA 385 (694)
Q Consensus 382 ~~~~ 385 (694)
++.+
T Consensus 223 eL~~ 226 (237)
T COG0410 223 ELLA 226 (237)
T ss_pred HHhc
Confidence 9863
No 160
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-42 Score=361.88 Aligned_cols=219 Identities=27% Similarity=0.481 Sum_probs=186.9
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++|++++|. .+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.+||+++..
T Consensus 6 ~~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 6 VMIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKEN 77 (271)
T ss_pred eEEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCC
Confidence 3699999999882 124579999999999999999999999999999999999643 458999999998752
Q ss_pred --hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
.+++.++|++|++. .++.+||+||+.++.... ....++..+++.++++.+||.+..++. ++.|||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 149 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQ 149 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHH
Confidence 35778999999974 566789999999875422 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ ++|||+++|++.. + ..||++++|++|++++.|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999876 5899999999864 4 479999999999999999988
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 228 ~~~ 230 (271)
T PRK13632 228 EIL 230 (271)
T ss_pred HHh
Confidence 764
No 161
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=360.51 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|....+ +.+|+|.++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 69999999998 2456999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+++. ||+||+.++...+.. .....+..+++.++++.+||.+...... +..+..||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 346779999999998875 999999987543211 0123344567888999999964221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999976 4668899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88764
No 162
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.5e-43 Score=353.23 Aligned_cols=210 Identities=27% Similarity=0.498 Sum_probs=173.4
Q ss_pred EEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCc
Q 005488 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (694)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~ 230 (694)
+++||+++| +++++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++. ..++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhh
Confidence 367899988 23569999999999999999999999999999999999643 45899999998774 45678
Q ss_pred EEEEccCCcCC--CCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 231 i~yV~Q~~~l~--~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++|++|++.++ ..+||+||+.+........ ....+...+++.++++.+|+++..++. +..||||||||++||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 2379999999864321100 011233456788999999997655543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999976 467889999999876 66654
No 163
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-42 Score=350.73 Aligned_cols=206 Identities=30% Similarity=0.537 Sum_probs=173.1
Q ss_pred EEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 005488 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (694)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~ 226 (694)
+++||+++|. +.++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHH
Confidence 3688999882 112579999999999999999999999999999999999653 468999999998742 3
Q ss_pred ccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 227 ~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
.++.++|++|++. .++.+||+||+.+..... ........+++.++++.+||.+..++ .+..||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDR-----SPFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHH
Confidence 4678999999974 355789999998865432 12334445678889999999766554 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 4667899999999985
No 164
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-42 Score=354.36 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHH
Confidence 4789999998 24579999999999999999999999999999999999653 458999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++.+|++||+.++..... .. ..+.++++++.++ +.+..++ .++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 235679999999999999999999998754321 11 1233466677665 4444443 456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 899999999975 4667899999999999999999887
Q ss_pred H
Q 005488 383 A 383 (694)
Q Consensus 383 ~ 383 (694)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 165
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-42 Score=362.11 Aligned_cols=222 Identities=23% Similarity=0.415 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|.... +..++++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccc
Confidence 699999999983210 0113579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.+||++|++. ++ ..||.||+.|+.... .....+.+++++++++.+||.+..++. +..||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~ 150 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQK 150 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 34678999999974 45 469999999875432 234455567789999999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. .||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999764 9999999999874 44 4999999999999999999
Q ss_pred HHHHH
Q 005488 381 SEAMA 385 (694)
Q Consensus 381 ~~~~~ 385 (694)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 98754
No 166
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.1e-44 Score=448.25 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..|+|+||+|+|. .+.+++|+|||++|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|++
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 4699999999993 123579999999999999999999999999999999996 5655 5899999999986
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
+.+|++|+|||||+.+|+. ||||||.++. ..++++.. ..+++.++. ++++.||.+|+.+ ..|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~~--lp~GLdt~Vge~G-~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIRR--NSLGLDAEVSEAG-ENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHHh--CccccCccccCCC-CCCCH
Confidence 3689999999999999975 9999998642 12222221 122334433 4678899998653 56999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+|+|++++ ...||||++|++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 4669999999999999999
Q ss_pred CHHHHHH
Q 005488 379 KASEAMA 385 (694)
Q Consensus 379 ~~~~~~~ 385 (694)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999975
No 167
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.8e-44 Score=442.64 Aligned_cols=347 Identities=21% Similarity=0.271 Sum_probs=234.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..+..++..++..+.++|++++.+||++|+++..+.++|.+........+.+.....+.+.........-..+..++.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688999999999999999999999999999987666555443332222222211111111122334456777
Q ss_pred HHHhhhh--------hhhh--------hhhccccC--------CCChhhhccCCCCCCCCCccccccccCCCCCCCCCCC
Q 005488 90 ALSRASS--------ASLG--------LSFSFTGF--------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPT 145 (694)
Q Consensus 90 ~~~~~~~--------~~~g--------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (694)
.++..+. .+.| .+.++..+ ....+..+..+.+...+.++.++.... .. ..+.
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~--~~--~~~~ 379 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD--GK--KLKD 379 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--Cc--cCCC
Confidence 7666541 1222 22111110 011112222222222222221111000 00 0111
Q ss_pred CCeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE-CCEeCC
Q 005488 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS 224 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~-~G~~~~ 224 (694)
. ..|+++||+|+|+. ++++++|+|+||+|++||++||+||||||||||+++|+| +++| .+|+|++ ||.++.
T Consensus 380 ~-~~I~~~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g-l~~p-~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 380 I-KKIQFKNVRFHYDT-----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER-LYDP-TEGDIIINDSHNLK 451 (1466)
T ss_pred C-CcEEEEEEEEEcCC-----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH-hccC-CCCeEEEeCCcchh
Confidence 1 26999999999831 123579999999999999999999999999999999998 4544 5899999 467764
Q ss_pred ----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccC----------CC-----------------------------C
Q 005488 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------T 261 (694)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~----------~~-----------------------------~ 261 (694)
+.+|++||||+|++.+|+ .||+|||.++..... +. .
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 246888999999999997 499999999742100 00 0
Q ss_pred C---------CHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005488 262 L---------TKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (694)
Q Consensus 262 ~---------~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (694)
. .....++++.++++.+ .|++.+||.+|.. ...||||||||++|||||+++|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 0001123455555544 4567789999865 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
||+.++..+.+.|+++.+ .|+|+|+++|+++. .+.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999999975 58999999999864 4789999999986
No 168
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=361.29 Aligned_cols=220 Identities=25% Similarity=0.418 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~-~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 11 TFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-P-PSEGEILLDAQPLESWSS 80 (265)
T ss_pred eEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-C-CCCCEEEECCEehhhCCH
Confidence 69999999998 2357999999999999999999999999999999999954 3 458999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
.+++.++|++|++.+++.+||.||+.++....... ........+++.++++.++|.+..++. +..||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHH
Confidence 34667999999988888899999998763211000 011123456688899999997665654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 899999999976 4678899999999999999999877
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 53
No 169
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-42 Score=357.89 Aligned_cols=222 Identities=24% Similarity=0.421 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~~~G~~~~~ 225 (694)
.|+++||++.| +++++|+|+|++|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996531 22 48999999998741
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++|++|++.+++. ||+||+.+...... ...+.+..++++++++.+++.+...... +..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHH
Confidence 346789999999999875 99999998753321 1123444566788899998854211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. .+.+.||++++|++|+++..|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999965 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-42 Score=359.00 Aligned_cols=224 Identities=24% Similarity=0.383 Sum_probs=187.7
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeC
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~~~G~~~ 223 (694)
...|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 4479999999998 346799999999999999999999999999999999996542 14689999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
.. ..++.++|++|++.+++ .||+||+.++.... ....+++.++++.++++.++|.+..+... +..++.||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 34678999999998887 59999999875421 11233445567888999999864322222 34567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999976 46788999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998864
No 171
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=357.82 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~- 224 (694)
.|+++||+++| +++++|+|+|++|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 235699999999999999999999999999999999996542 1 25899999999863
Q ss_pred -----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..+++.++|++|++.+++.+||+||+.++...+. ....++.++++.++++.+||.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346789999999999998999999998754321 1123445567888999998842111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCe
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~ 373 (694)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 789999999975 4678899999997 799
Q ss_pred EEEecCHHHHH
Q 005488 374 LLYFGKASEAM 384 (694)
Q Consensus 374 iv~~G~~~~~~ 384 (694)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
No 172
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.8e-42 Score=358.97 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHH
Confidence 6899999998 34579999999999999999999999999999999999543 458999999998743
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++. +..||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3456799999998777789999999885321000 0011123345788899999997666653 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+|||||+.+|+++||||||+|||+.+...+.+.|++++++|.|||+++|++. .+.+.||+|++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999986 467889999999999999999988763
No 173
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=355.80 Aligned_cols=222 Identities=28% Similarity=0.443 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCC--cccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~-~~~--~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++++|+|+|++|++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 58999999998 24579999999999999999999999999999999999642 232 48999999998731
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++||+|++.+|+ +||+||+.++...+ . .......++++.++++.+++.+..... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 34678999999999987 79999999875432 1 112233456678889998875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 689999999975 4778899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 174
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.2e-42 Score=351.15 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=181.8
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccc
Confidence 4789999988 24579999999999999999999999999999999999653 4689999999987543345
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
.++|++|++.+++.+|++||+.+....+. .. .+++.++++.+||.+..+.. +..||||||||++|||+
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999988654321 11 24577889999998766643 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877999999999976 4678899999999999999998753
No 175
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-44 Score=380.23 Aligned_cols=225 Identities=33% Similarity=0.510 Sum_probs=194.8
Q ss_pred CCeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-
Q 005488 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 224 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~- 224 (694)
.+..+.|+||+|.|. +.+++|+++||++++|+.+||+||||+||||++++|- |++++. +|.|.+||+++.
T Consensus 259 ~~g~v~F~~V~F~y~-------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~~-sG~I~id~qdir~ 329 (497)
T COG5265 259 RLGAVAFINVSFAYD-------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRD 329 (497)
T ss_pred ccceEEEEEEEeecc-------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCCc-CceEEEcchhHHH
Confidence 345799999999983 5678999999999999999999999999999999999 688765 899999999985
Q ss_pred ---hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 225 ---~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
+.+|+-||.||||..||++ |+..|+.|+......+.+..+.+.++++++++.+ +++++|.||+++.+ ||||||
T Consensus 330 vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~Vgerglk-lSggek 405 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLK-LSGGEK 405 (497)
T ss_pred hHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheee-ccCchH
Confidence 3689999999999999965 9999999984322111122223344556666654 99999999988765 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|||+|||+++++|+||+|||.||+||..++++|...|+++. .|+|.+++.|++++ .-.+|.|+||++|+|++.|+|+
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~~g~i~erg~h~ 482 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLDNGRIVERGTHE 482 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEeeCCEEEecCcHH
Confidence 99999999999999999999999999999999999999987 49999999999986 4569999999999999999999
Q ss_pred HHHHH
Q 005488 382 EAMAY 386 (694)
Q Consensus 382 ~~~~~ 386 (694)
++++.
T Consensus 483 ~ll~~ 487 (497)
T COG5265 483 ELLAA 487 (497)
T ss_pred HHHHc
Confidence 99863
No 176
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=360.92 Aligned_cols=221 Identities=23% Similarity=0.392 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 6 ~~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 6 ARLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYA 75 (265)
T ss_pred cEEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCC
Confidence 369999999998 24579999999999999999999999999999999999653 458999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++.+++.+||+||+.++.....+. ....+...+++.++++.+||.+..++ .+..|||||||
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~q 150 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQ 150 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHH
Confidence 34567999999999998899999998753111000 00112344568889999999765554 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 899999999976 477899999999999999999988
Q ss_pred HHH
Q 005488 382 EAM 384 (694)
Q Consensus 382 ~~~ 384 (694)
++.
T Consensus 230 ~~~ 232 (265)
T PRK10253 230 EIV 232 (265)
T ss_pred HHh
Confidence 865
No 177
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4e-42 Score=353.89 Aligned_cols=216 Identities=27% Similarity=0.501 Sum_probs=187.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++|++++| +++++|+|+|+++.+||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4789999998 24579999999999999999999999999999999999643 458999999998753 34
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+|+.+|++||+.+....+ ........+.++++++.+++.+..++. +..|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 122334456778999999997666653 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999875 899999999975 467889999999999999999988874
No 178
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=359.40 Aligned_cols=226 Identities=26% Similarity=0.453 Sum_probs=193.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC--
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~-- 224 (694)
|+++||+..|... .+...+++||||++++||++||+|.|||||||+.+.|+|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999988432 23567999999999999999999999999999999999877533 26799999999763
Q ss_pred -h----hc-cCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 005488 225 -K----SL-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (694)
Q Consensus 225 -~----~~-~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (694)
+ .+ .+.|++||||+ .|.|.+||.+.+.-...... .. .+++..+++.+.++.+||++-.. +.+.++.+
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 2 22 35799999997 58899999998887665422 12 35667788999999999986432 34578999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|+||||+.- +.++||||+||..|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 59999999999864 7899999999999999
Q ss_pred EEecCHHHHH
Q 005488 375 LYFGKASEAM 384 (694)
Q Consensus 375 v~~G~~~~~~ 384 (694)
|+.|+.+++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
No 179
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.6e-44 Score=410.04 Aligned_cols=334 Identities=23% Similarity=0.269 Sum_probs=223.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhh
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.+++.++..+...|.....+++|+++.+..+.+++.+...+......+.................-..+.-+..|+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888889999999999999999998888876554433322110000000000000001111111122344
Q ss_pred HHHhhhhhhhhhhhccccCC----CChhhh------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 005488 90 ALSRASSASLGLSFSFTGFT----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (694)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (694)
.....|..+.|.++.+..+. .|...+ +..+.....+.++. .. +.....+.....|+++
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~-----~~-~~~~~~~~~~~~i~~~ 324 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRP-----LA-GKAPVTAAPAPSLEFS 324 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-----cC-CCcCCCCCCCCeEEEE
Confidence 44445556666655554322 121111 11111111111100 00 0000001111369999
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccC
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKS 229 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~----~~~~~ 229 (694)
||+|+|+ ..++++|+|+|++|+|||.++|+||||||||||+|+|+|. ++ +.+|+|.+||.++. +.+|+
T Consensus 325 ~v~f~y~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 325 GLSVAYP------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred EEEEECC------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHh
Confidence 9999983 2235799999999999999999999999999999999984 44 45899999999985 35788
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
+++||+|++.+|+ .|++|||.++.. ..++++..+ .++++++. ++++.||.+|+. ...||||||||+
T Consensus 397 ~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~~i~~a~~~~~l~~~i~~--lp~Gldt~v~e~-g~~LSgGq~qri 467 (529)
T TIGR02857 397 QIAWVPQHPFLFA-GTIAENIRLARP-----DASDAEIRRALERAGLDEFVAA--LPQGLDTLIGEG-GAGLSGGQAQRL 467 (529)
T ss_pred heEEEcCCCcccC-cCHHHHHhccCC-----CCCHHHHHHHHHHcCcHHHHHh--Ccccccchhccc-cccCCHHHHHHH
Confidence 9999999999997 599999998632 122222111 22333333 366789999864 456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (694)
+|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 99999999999999999999999999999999999985 58999999999853 5789999975
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-42 Score=354.27 Aligned_cols=222 Identities=24% Similarity=0.433 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~~ 225 (694)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFY--------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEE--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 58999999998 235799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++|++|++.+++ +|++||+.++..... ....+..++++.++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34678999999999887 899999998754321 1123344567788888888753211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.+|++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 899999999975 4778899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88764
No 181
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-43 Score=357.27 Aligned_cols=226 Identities=27% Similarity=0.436 Sum_probs=197.3
Q ss_pred eeEEEEeEEEEEeecc----------c------ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 005488 148 IYLKFTDVTYKVILKG----------M------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT 211 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~----------~------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~ 211 (694)
..|+++||++-+..+. . ...+-..-++|+|++|+.||+..|||-||||||||+++|.+ +.+|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-
Confidence 3588999987663221 0 00112346899999999999999999999999999999995 6655
Q ss_pred cccEEEECCEeCCh-------h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005488 212 VGGSITYNDHPYSK-------S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283 (694)
Q Consensus 212 ~~G~I~~~G~~~~~-------~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 283 (694)
+.|+|+++|.++.+ . .|++++.|||+..|+|+.||.||..|+...+ .++++++++++.++|+.+||...
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 58999999998742 2 3567999999999999999999999998775 57899999999999999999988
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhc
Q 005488 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK 362 (694)
Q Consensus 284 ~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~ 362 (694)
.+. ++++|||||||||.|||||..+|+||++|||+|+|||--+.++.+.|.+|.++ ++|||++|||+. +.+++
T Consensus 158 ~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 158 ADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 775 57899999999999999999999999999999999999999999999999654 899999999986 57899
Q ss_pred cCEEEEEeCCeEEEecCHHHHH
Q 005488 363 FDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 363 ~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
.|||.+|++|+|+..|+|+|++
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999987
No 182
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-43 Score=445.04 Aligned_cols=215 Identities=22% Similarity=0.346 Sum_probs=182.9
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..|+|+||+|+|. .+.+++|+|+|++|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|++
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999993 133579999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCC
Q 005488 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~L 296 (694)
+.+|++|+|||||+.+|+. |++|||.++. ..++++ +.++++.. .++++.||.+|+.+ ..|
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G-~~L 1372 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSEGG-ENF 1372 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecCCC-CCC
Confidence 3679999999999999975 9999998642 123322 33333333 24667899998653 569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
|||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+|+|+++. ...||+|++|++|++++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999864 46699999999999999
Q ss_pred ecCHHHHHH
Q 005488 377 FGKASEAMA 385 (694)
Q Consensus 377 ~G~~~~~~~ 385 (694)
.|+|+|+++
T Consensus 1450 ~Gt~~eLl~ 1458 (1495)
T PLN03232 1450 YDSPQELLS 1458 (1495)
T ss_pred ECCHHHHHh
Confidence 999999874
No 183
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-42 Score=354.26 Aligned_cols=212 Identities=31% Similarity=0.484 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCh
Confidence 58999999998 24569999999999999999999999999999999999643 458999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.+||+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34678999999999887 69999998754321 1 1234677889999996 33443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999874 899999999976 4677899999999999999999988
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
No 184
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-42 Score=350.61 Aligned_cols=216 Identities=28% Similarity=0.475 Sum_probs=187.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 34579999999999999999999999999999999999653 458999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+|++||+.+....+ ........++++++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 567999999999998899999999875432 123344456788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999865 899999999975 467889999999999999999987764
No 185
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7e-42 Score=349.69 Aligned_cols=213 Identities=31% Similarity=0.479 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh--
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 226 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~-- 226 (694)
.|+++||+++|..+ ...+++|+|+|++|++||+++|+||||||||||+++|+|.. + +.+|+|.++|+++...
T Consensus 6 ~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~-p~~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 6 IVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-D-GSSGEVSLVGQPLHQMDE 79 (228)
T ss_pred eEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-C-CCCeeEEECCEEcccCCH
Confidence 69999999998310 01135999999999999999999999999999999999954 3 4589999999987421
Q ss_pred -----c-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 227 -----L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 227 -----~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
. ++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.++|.+..+.. +..|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge 151 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGGE 151 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHH
Confidence 2 357999999999999899999999865332 123344567788999999998766543 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. + +.+|++++|++|++++.
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999764 8999999999763 4 56999999999999753
No 186
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.1e-43 Score=346.02 Aligned_cols=220 Identities=29% Similarity=0.545 Sum_probs=204.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|++++|+++| +++.+++|+||+++||++.+++|||||||||.+++|.|.+. +++|+|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 48999999988 68899999999999999999999999999999999999653 458999999999998889
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
.+|||+|.+.-|++.+||.|.|.|-+.++ .+++++.++++..+++++++....... +.+||.|++|++.+-.
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 578889999999999999998766544 5789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (694)
+++++|+++|||||+|||||.+.+.+-+.+.++++.|.|||+++|+.. .+.++||++++|++|+.|.+|+.+++.+-|
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999999999999999975 589999999999999999999999998754
No 187
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-42 Score=366.79 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=188.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~~~G~~~~ 224 (694)
..|+++|++++|. .+.+++|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4799999999983 1345799999999999999999999999999999999986431 135899999999985
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
..+++.++||||++.+|+ .|++|||.|+.... ... .+..++.+.+.++.++|.+..++.++ +.+..||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245788999999999995 79999999875321 122 22334557788888888655555554 3467899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 799999999976 46677999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
No 188
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=358.32 Aligned_cols=219 Identities=24% Similarity=0.419 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|.. ...+++|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCH
Confidence 6899999999831 123469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++. .++..||.||+.++.... ....++..++++++++.+||.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHH
Confidence 35678999999974 566789999999865421 22344455678899999999876654 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..+|++++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 9999999999865 4 4699999999999999999988
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 75
No 189
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-42 Score=347.05 Aligned_cols=208 Identities=25% Similarity=0.443 Sum_probs=175.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++|++++|. ++. .|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHh
Confidence 47899999882 222 39999999999999999999999999999999643 458999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+||+||+.++..... .. .++.++++.++++.+||.+..++. +..||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999999999999988643211 11 223456788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999764 899999999975 466789999999999998764
No 190
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-42 Score=361.76 Aligned_cols=221 Identities=24% Similarity=0.409 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++||+++|..+ ....+++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKK---TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCC---CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccc
Confidence 58999999998311 0001359999999999999999999999999999999999653 45899999998863
Q ss_pred -----hhccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCC
Q 005488 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (694)
Q Consensus 225 -----~~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (694)
..+++.|+|++|++. +++ .||+||+.++.... ....++..+++.++++.++|+ +..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134677999999973 454 59999999875321 123444456678899999995 44443 45689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999976 467889999999999999
Q ss_pred EecCHHHHH
Q 005488 376 YFGKASEAM 384 (694)
Q Consensus 376 ~~G~~~~~~ 384 (694)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988764
No 191
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-42 Score=354.35 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~~ 225 (694)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 45789999988 245799999999999999999999999999999999996431 2 358999999998642
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+++. ||+||+.+....+. ........++.+.++++.+||.+...+.+ +..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 346789999999999985 99999998743321 11122334456788999999965322222 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999976 4677899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
No 192
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=353.17 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~---~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+...+ .+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 68999999998 24579999999999999999999999999999999999653211 37999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+++.+|+.||+.++..... ...+++..+.+.+.++.+++.+..... .+..++.||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 346679999999999998999999987654221 112333445667777777664211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 799999999976 4667899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 193
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=353.15 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~~ 225 (694)
.|+++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.... | +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996532 1 258999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++|++|++.+++ +||+||+.++..... ....+..++.+.+.++.+|+.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34678999999999987 899999998754321 112333455678888988885422111 23456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|+++..|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999975 789999999976 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98875
No 194
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=350.44 Aligned_cols=214 Identities=26% Similarity=0.455 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++||+++|. ++. .|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 2 LKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred eEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChh
Confidence 78999999982 222 38999999999999999999999999999999543 458999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+||++..++. +..||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 141 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALA 141 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHH
Confidence 4679999999999998999999987632111 11 223456788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999764 899999999976 467789999999999999999988764
No 195
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.7e-42 Score=373.10 Aligned_cols=206 Identities=24% Similarity=0.406 Sum_probs=180.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE----eCCh----h---c-cCcEEEEc
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK----S---L-KSKIGFVT 235 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~----~~~~----~---~-~~~i~yV~ 235 (694)
+...+|+|+||+|++||+++|+||||||||||+++|+|.+ . +.+|+|.++|+ ++.. . . ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-P-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 3457999999999999999999999999999999999954 3 45899999996 3321 1 2 25799999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 005488 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (694)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~ 315 (694)
|++.+|+.+||+||+.|+...+ ..++++.++++.++++.+||.+..+. ++.+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~-----~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADK-----KPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986432 23456667788999999999877665 456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
||||||||+|||+.++.++.+.|+++.++ |+|||++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999875 899999999976 477899999999999999999999875
No 196
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=352.33 Aligned_cols=223 Identities=24% Similarity=0.387 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~ 224 (694)
+.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 368999999998 245699999999999999999999999999999999996532 1 25899999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
. ..++.++|++|++.+++ +|++||+.+...... .....+..+++.++++.++|.+..... -+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCH
Confidence 2 34677999999999997 899999998754321 112334456678889999885321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999976 689999999975 467889999999999999999
Q ss_pred CHHHHH
Q 005488 379 KASEAM 384 (694)
Q Consensus 379 ~~~~~~ 384 (694)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 998864
No 197
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=371.35 Aligned_cols=207 Identities=28% Similarity=0.491 Sum_probs=180.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|++ ||+++| +++. + |+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~--------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQL--------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEe--------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 677 899988 2222 3 8999999999999999999999999999999653 458999999998642
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.++||+|++.+|+++||+||+.|+.. ....+++.++++.+||.+..+. .+..||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDR-----YPGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhC-----CcccCCHHHH
Confidence 246789999999999999999999998642 1234568899999999876665 4578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++..+||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 899999999975 57889999999999999999999
Q ss_pred HHHH
Q 005488 381 SEAM 384 (694)
Q Consensus 381 ~~~~ 384 (694)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9875
No 198
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=357.40 Aligned_cols=222 Identities=23% Similarity=0.390 Sum_probs=183.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 479999999998 345699999999999999999999999999999999996431 036899999999863
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
..+++.++|++|++.+++ .||+||+.+.+..+ .... ..++++.++++.+++....+.. -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 234677999999999997 49999999876432 1122 2345677788888774321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-------
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~------- 371 (694)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999964 789999999975 57789999999996
Q ss_pred ----CeEEEecCHHHHHH
Q 005488 372 ----GSLLYFGKASEAMA 385 (694)
Q Consensus 372 ----G~iv~~G~~~~~~~ 385 (694)
|++++.|+++++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67999999988753
No 199
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-43 Score=442.93 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+|+||+|+|+. +.+++|+|||++|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||.|+++
T Consensus 1283 g~I~f~nVsf~Y~~------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeCC------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 46999999999931 23479999999999999999999999999999999996 5655 48999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCC
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (694)
.+|++|+|||||+.+|+. |+||||.... ..++++ +.++++..+ ++++.||.+|+.+ ..|
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G-~~L 1422 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEGG-ENL 1422 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCCC-CcC
Confidence 679999999999999975 9999997321 123322 333333333 3577899998643 569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
|||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+|+|+++. ...+|||++|++|+|++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999865 56799999999999999
Q ss_pred ecCHHHHHH
Q 005488 377 FGKASEAMA 385 (694)
Q Consensus 377 ~G~~~~~~~ 385 (694)
.|+|+++++
T Consensus 1500 ~G~~~eLl~ 1508 (1522)
T TIGR00957 1500 FGAPSNLLQ 1508 (1522)
T ss_pred ECCHHHHHh
Confidence 999999975
No 200
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=349.09 Aligned_cols=215 Identities=30% Similarity=0.541 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
|+++|++++| ++ ++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDW--------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEe--------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChh
Confidence 4689999988 22 38999999999999999999999999999999999543 458999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+|+.||+.++.... .....+..+++.++++.+||.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 568999999999998899999999875332 123444556778899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999765 899999999975 467789999999999999999988764
No 201
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-41 Score=356.57 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccc-ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
+|+++||+++|..+.. ...+++++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 5999999999831100 00123579999999999999999999999999999999999643 458999999998752
Q ss_pred --hccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 005488 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGe 300 (694)
..++.++|++|++. +++.+||.+++.+...... .....+..+++.++++.+||. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344556788999999994 44443 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|||++|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999864 899999999975 4677899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
No 202
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-42 Score=389.69 Aligned_cols=221 Identities=22% Similarity=0.332 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+...+.+|+|.++|+++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH
Confidence 59999999998 3457999999999999999999999999999999999965321368999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.+|||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..+.. +.+||||||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqr 151 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQL 151 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHHH
Confidence 13567999999999999999999999875322101123344556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999999877999999999976 46788999999999999999998764
No 203
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.7e-42 Score=370.88 Aligned_cols=209 Identities=29% Similarity=0.467 Sum_probs=180.5
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-------- 225 (694)
||+++| +++. + |+||++++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccc
Confidence 788887 2333 4 9999999999999999999999999999999643 458999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..++.++||+|++.+|+.+||+||+.|+.... ...+.+++++++++.+||.+..++. +.+|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24677999999999999999999999875421 1233456788999999998766653 5689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..++|++++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999976 477889999999999999999998875
Q ss_pred H
Q 005488 385 A 385 (694)
Q Consensus 385 ~ 385 (694)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
No 204
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=355.42 Aligned_cols=222 Identities=24% Similarity=0.380 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+..+ +.+|+|.++|.++..
T Consensus 25 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 69999999998 2357999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+|+. ||+||+.+...... ...++..++++.++++.+++.+...+.. +..+..||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 172 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGG 172 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHH
Confidence 346789999999999986 99999998754321 1122334456788888888864211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999976 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 251 ~~~~~ 255 (272)
T PRK14236 251 TDTLF 255 (272)
T ss_pred HHHHh
Confidence 88764
No 205
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.4e-41 Score=344.17 Aligned_cols=209 Identities=26% Similarity=0.472 Sum_probs=177.9
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~ 227 (694)
++++||+++|. .+++|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChh
Confidence 47899999881 14689999999999999999999999999999999653 458999999998753 35
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++||+|++.+|+.+|++||+.+...... ......++++.++++.+||.+..++ .++.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHH
Confidence 6779999999999998999999987643211 1122235567889999999766654 3568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 4667899999999999998875
No 206
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=339.52 Aligned_cols=189 Identities=48% Similarity=0.839 Sum_probs=165.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|+++|+++.|... ..++++|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....+
T Consensus 3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 58999999998311 11357999999999999999999999999999999999964333568999999998865567
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
+.++|++|++.+++.+||+||+.++... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999989999999875310 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEEec
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (694)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999986446788999999999 9999876
No 207
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=353.78 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~~~G~~~~~ 225 (694)
.|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 69999999998 34579999999999999999999999999999999999542 11 468999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++|++|++.+++. ||+||+.+...... .......++.+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 346789999999999975 99999998653221 112223345677788888885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
No 208
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-41 Score=341.54 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~~-- 225 (694)
.+.|+||+|.|+.+ ++++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 58999999999532 24678999999999999999999999999999999999965311 468999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 45678999999999999999999998763210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999765 6787777776555678899999999999998765
No 209
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=350.83 Aligned_cols=221 Identities=24% Similarity=0.386 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~- 224 (694)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 3457999999999999999999999999999999999964321 25899999998873
Q ss_pred ----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
...++.++|++|++.+++ .||.||+.++.... ........++++.+.++.+++.+...... +..+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 134678999999999997 79999999875321 11123334566778888888754221111 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 57788999999999999999998
Q ss_pred HHH
Q 005488 381 SEA 383 (694)
Q Consensus 381 ~~~ 383 (694)
+++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 776
No 210
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=350.98 Aligned_cols=222 Identities=27% Similarity=0.415 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999996431 21 47999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++|++|++.+|+. ||+||+.+....+. .......++.+.++++.+++.+...+.. +..+..||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHH
Confidence 345679999999999975 99999998754321 1122334556778888888754221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|+++..|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999976 689999999975 4667899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14261 232 TTQIF 236 (253)
T ss_pred HHHHH
Confidence 98764
No 211
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=350.27 Aligned_cols=222 Identities=24% Similarity=0.412 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +.+++|+|+|++|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 235799999999999999999999999999999999996532 2 358999999998731
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++|++|++.+++ .||+||+.++..... ....+...+++.++++.+++....... -+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHH
Confidence 34677999999999886 799999988653221 112233445678888998884211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 789999999976 4677899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98764
No 212
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=356.91 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=182.9
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-------cccEEEECCEe
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDHP 222 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~-------~~G~I~~~G~~ 222 (694)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. |. .+|+|.++|++
T Consensus 2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEE
Confidence 7899999988 34579999999999999999999999999999999999653 32 17999999998
Q ss_pred CCh----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 223 ~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
+.. .+++.++|++|++.++..+||+||+.++...... ......+..+++.++++.+||.+..++ .+..||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLS 147 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 742 3456789999998765568999999886321100 011112344568889999999765554 456899
Q ss_pred HHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEE
Q 005488 298 GGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 298 GGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
|||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||+++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 99999999999999 599999999999999999999999999999876 899999999976 4667899999
Q ss_pred EEeCCeEEEecCHHHHH
Q 005488 368 LLGKGSLLYFGKASEAM 384 (694)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (694)
+|++|++++.|+++++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 227 MLADGAIVAHGAPADVL 243 (272)
T ss_pred EEECCeEEEecCHHHHc
Confidence 99999999999988763
No 213
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=349.71 Aligned_cols=221 Identities=22% Similarity=0.393 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cccEEEECCEeCC
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~----~~G~I~~~G~~~~ 224 (694)
.|+++||+++| +++.+|+|+|++|++|++++|+||||||||||+++|+|... |. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 24569999999999999999999999999999999999653 32 2699999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
. .+++.++||+|++.+++. ||+||+.+....+. ....+...+.+++.++.+++.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999975 99999998754321 111223345677778888875422211 2345678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++. .+.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999976 467889999999999999999
Q ss_pred CHHHHH
Q 005488 379 KASEAM 384 (694)
Q Consensus 379 ~~~~~~ 384 (694)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 988864
No 214
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.5e-42 Score=351.93 Aligned_cols=214 Identities=31% Similarity=0.554 Sum_probs=172.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
++++||+++|. ...+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHH
Confidence 47899999882 123579999999999999999999999999999999999653 458999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCCCCCH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (694)
.+++.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++.... +..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIV-----GEQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchh-----hcCCCcCCH
Confidence 34678999999998885 6999999875321 1111111 1223444444 333222 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999864 4 569999999999999999
Q ss_pred CHHHHHH
Q 005488 379 KASEAMA 385 (694)
Q Consensus 379 ~~~~~~~ 385 (694)
+++++..
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9888653
No 215
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.3e-41 Score=351.31 Aligned_cols=218 Identities=26% Similarity=0.404 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-----C
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~-----~ 223 (694)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|++ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccccccc
Confidence 59999999998 23579999999999999999999999999999999999543 458999999987 5
Q ss_pred Ch----h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 005488 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (694)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (694)
.. . .++.++|++|++. +++.+|+.||+.+...... .....+..+++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 2457999999973 6777899999986532211 1122334567889999999963 4443 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.+|++++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999998765 899999999975 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 005488 372 GSLLYFGKASEAM 384 (694)
Q Consensus 372 G~iv~~G~~~~~~ 384 (694)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
No 216
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=354.40 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcccEEEECCEeCC
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYS 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~~~G~~~~ 224 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. | +.+|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEcc
Confidence 69999999998 34579999999999999999999999999999999999653 3 35899999999874
Q ss_pred h-----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 225 ~-----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
. .+++.++|++|++.+|+ +||+||+.++.... ...+..+..+++.+.++.++|.+..++.. +..+..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 2 34678999999999997 79999999875321 11233444456778889999875332222 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 98874
No 217
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-41 Score=352.76 Aligned_cols=222 Identities=23% Similarity=0.411 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++.+|+|+|++|++||+++|+|+||||||||+++|+|.+.. + +.+|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 24 VFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred EEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 69999999998 245699999999999999999999999999999999996531 2 368999999998731
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+|+ .||+||+.++..... .......++.+.+.++.+++.+...... +..+..||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgG 171 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGG 171 (271)
T ss_pred ccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHH
Confidence 34678999999999887 599999998754321 1122223445677777775532111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 799999999976 4677899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 250 ~~~~~ 254 (271)
T PRK14238 250 TDKIF 254 (271)
T ss_pred HHHHH
Confidence 88763
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=347.36 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCC--cccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~-~~~--~~G~I~~~G~~~~~ 225 (694)
+|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 69999999998 24579999999999999999999999999999999999643 121 48999999998731
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+++ .||+||+.+....+.. ...+..++++.+.++.+++....... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34678999999999998 6999999987543211 12222344567778888764221111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.||+|++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
+.+..
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
No 219
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=349.97 Aligned_cols=222 Identities=22% Similarity=0.404 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cccEEEECCEeCC
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~----~~G~I~~~G~~~~ 224 (694)
.|+++||+++| +++.+|+|+||++++||+++|+|+||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYY--------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEe--------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 69999999998 23469999999999999999999999999999999999653 32 3799999998863
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
..+++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+.. .+..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCH
Confidence 134677999999999998 899999998653221 112333456678899999885432211 1345578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeC-----C
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-----G 372 (694)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999875 4899999999975 57789999999999 9
Q ss_pred eEEEecCHHHHH
Q 005488 373 SLLYFGKASEAM 384 (694)
Q Consensus 373 ~iv~~G~~~~~~ 384 (694)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999874
No 220
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=350.23 Aligned_cols=222 Identities=22% Similarity=0.423 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-C--cccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~--~~G~I~~~G~~~~~ 225 (694)
.|+++||+++| +++++|+|+|++|++||+++|+|+||||||||+|+|+|.+... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 69999999998 2356999999999999999999999999999999999965321 2 47999999998732
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
.+++.++|++|++.+|+ +||+||+.++...+. ...+....+++.++++.+++.+..... .+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHH
Confidence 34668999999999997 899999988754321 122334455677888988884321111 12456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-----CCeE
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-----~G~i 374 (694)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 699999999976 5778999999998 5999
Q ss_pred EEecCHHHHH
Q 005488 375 LYFGKASEAM 384 (694)
Q Consensus 375 v~~G~~~~~~ 384 (694)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-41 Score=354.72 Aligned_cols=223 Identities=22% Similarity=0.366 Sum_probs=183.2
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... .| +.+|+|.++|+++.
T Consensus 38 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 469999999998 23469999999999999999999999999999999999642 13 36899999999864
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
. .+++.++||+|++.+++. ||+||+.++...+. .......++++.++++.+|+.+..... -+..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 185 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSG 185 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCH
Confidence 2 246789999999998875 99999998754321 112233445677888888874211111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 689999999976 467789999999999999999
Q ss_pred CHHHHH
Q 005488 379 KASEAM 384 (694)
Q Consensus 379 ~~~~~~ 384 (694)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 998864
No 222
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-41 Score=341.62 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=173.2
Q ss_pred EEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----
Q 005488 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (694)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----- 225 (694)
++ ||+++| +++.+ |+|++|++ |+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchh
Confidence 44 889888 23444 99999999 9999999999999999999999653 458999999988641
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+++..+. .+..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHH
Confidence 24567999999999998899999998865321 233445678899999999765554 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999875 899999999975 466789999999999998765
No 223
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.2e-43 Score=437.92 Aligned_cols=215 Identities=23% Similarity=0.386 Sum_probs=182.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..|+|+||+|+|. .+.+++|+||||+|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||+|+.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 4699999999993 233569999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCC
Q 005488 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (694)
+.+|++|+|||||+.+|+. ||+|||.... ..++ +++.++++..| ++++.||.+|+.+ ..|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G-~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEGG-SNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCc-CcC
Confidence 3689999999999999975 9999996421 2233 23444444444 3567899998643 569
Q ss_pred CHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
|||||||++|||||+++ |+|||||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 48999999999864 5789999999999999
Q ss_pred EecCHHHHHH
Q 005488 376 YFGKASEAMA 385 (694)
Q Consensus 376 ~~G~~~~~~~ 385 (694)
+.|+|+++++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
No 224
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=384.65 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 59999999998 34579999999999999999999999999999999999653 458999999998742
Q ss_pred -h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
. .++.++||+|++.+++.+||+||+.++...... ......+.++++.++++.+||.+..+.. +..|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 346799999999999999999999986432110 1122334456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+.+.||+|++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877999999999975 4778999999999999999998765
Q ss_pred H
Q 005488 383 A 383 (694)
Q Consensus 383 ~ 383 (694)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 225
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=9.7e-41 Score=346.32 Aligned_cols=221 Identities=25% Similarity=0.345 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||++.| +++.+|+|||+++++||+++|+|+||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 69999999998 2356999999999999999999999999999999999963223468999999998753
Q ss_pred -hccC-cEEEEccCCcCCCCCCHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCC-CCC
Q 005488 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GVS 297 (694)
Q Consensus 226 -~~~~-~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~-~LS 297 (694)
..++ .++|++|++.+++.+|+.+|+.+....... ......+..+++.++++.+|+. +..++. +. +||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VNEGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cccCCC
Confidence 1222 488999999999999999999876432110 0111223345678899999996 344433 33 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEE
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLY 376 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~ 376 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... +|++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999998779999999999754 4444 89999999999999
Q ss_pred ecCHHHH
Q 005488 377 FGKASEA 383 (694)
Q Consensus 377 ~G~~~~~ 383 (694)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999843
No 226
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=384.40 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999653 458999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhcc--C-C-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR--L-P-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++||+|++.+++.+||+||+.++.... . . ......+..+++.++++.+||.+..++. +.+||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 12457999999999999999999998764210 0 0 0012334456788999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+...||++++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999975 4678899999999999999999
Q ss_pred HHHH
Q 005488 380 ASEA 383 (694)
Q Consensus 380 ~~~~ 383 (694)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
No 227
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.7e-41 Score=346.57 Aligned_cols=200 Identities=34% Similarity=0.490 Sum_probs=171.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEc-cCCcCCCC
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPH 243 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~ 243 (694)
+++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++. ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999653 45899999998753 23567899998 55778888
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005488 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (694)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPT 323 (694)
+||+||+.+..... ....++..+++.++++.+||++..++. +..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 123344456678899999998777765 4589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999765 899999999975 467889999999999998765
No 228
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=331.26 Aligned_cols=218 Identities=28% Similarity=0.514 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+.+|++|+. ..+.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.+++.
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 47899999987 56789999999999999999999999999999999999764 458999999999863
Q ss_pred -hccCcEEEEccCCcC-CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l-~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
++.+.-+.+||+..+ || .||+|-+.++...... .-...+..+.+.+.+...++.+.+.. ....||||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R-----~y~~LSGGEqQR 143 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGR-----DYRTLSGGEQQR 143 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhcc-----chhhcCchHHHH
Confidence 455667999999766 55 6999999998632211 11223455567888888888776654 346899999999
Q ss_pred HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 304 VCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 304 v~IA~aL~~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|.+||.|.. ++++||||||||+||...+..++++.++++++|..|+++.||++- ...+||||++|++||++..
T Consensus 144 VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 144 VQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred HHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeec
Confidence 999999976 456999999999999999999999999999999999999999986 5689999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|++++++
T Consensus 223 g~p~~vl 229 (259)
T COG4559 223 GSPQDVL 229 (259)
T ss_pred CCHHHhc
Confidence 9999876
No 229
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-41 Score=346.55 Aligned_cols=222 Identities=22% Similarity=0.393 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~~ 225 (694)
.|+++||++.| +++++|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.+||+++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 58899999988 245799999999999999999999999999999999995431 2 258999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..++.++|++|++.+|+. |++||+.++.... .....+..++++.+.++.+|+.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999975 9999999865322 11123344567888999998854322222 3456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999965 899999999976 4778899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98864
No 230
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.1e-41 Score=382.23 Aligned_cols=214 Identities=23% Similarity=0.417 Sum_probs=186.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 458999999998742
Q ss_pred --h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 --S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
. .++.+|||+|++.+++.+||+||+.+.... ..+.++++.++++.+||.+..+.. +..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 1 235699999999999999999999886321 123456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++|++|++++.|++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 999999999999999999999999999999999999999888999999999975 4678899999999999999999876
Q ss_pred HH
Q 005488 383 AM 384 (694)
Q Consensus 383 ~~ 384 (694)
+.
T Consensus 227 ~~ 228 (510)
T PRK15439 227 LS 228 (510)
T ss_pred cC
Confidence 53
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=349.79 Aligned_cols=221 Identities=22% Similarity=0.356 Sum_probs=181.6
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 19 ~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 479999999998 245799999999999999999999999999999999996532 1 24899999999873
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
. .+++.++|++|++.+++. ||.||+.++...+. .. ...++.+.+.++.+++.+..... -+..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 346789999999998875 99999998653321 11 12234466777887774221111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe--------
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-------- 370 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-------- 370 (694)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 789999999976 4778999999998
Q ss_pred -CCeEEEecCHHHHH
Q 005488 371 -KGSLLYFGKASEAM 384 (694)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (694)
+|++++.|+++++.
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999999874
No 232
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.5e-41 Score=371.78 Aligned_cols=228 Identities=27% Similarity=0.443 Sum_probs=197.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~~~G~~~~~- 225 (694)
.|+++|++..|... ++..++++||||++.+||++||+|.|||||||+.++|.|.+..+. .+|+|.++|+++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999998542 233579999999999999999999999999999999999765432 47999999997631
Q ss_pred ------h-ccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 226 ------S-LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 ------~-~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
. ..+.|+||||++ .+.|-+||.+-|.-....+.. ...++.++++.++++.+||++.... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 346799999997 467778999998877665432 3477888899999999999876554 5789999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 5999999999986 478899999999999999
Q ss_pred EecCHHHHHHH
Q 005488 376 YFGKASEAMAY 386 (694)
Q Consensus 376 ~~G~~~~~~~~ 386 (694)
+.|+++++++.
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999764
No 233
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=9.2e-41 Score=347.31 Aligned_cols=219 Identities=20% Similarity=0.336 Sum_probs=180.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| ++++|+|+|+++++||+++|+||||||||||+++|+|... | +.+|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 3 QQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred cEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeecc
Confidence 369999999987 2369999999999999999999999999999999999653 3 16899999999875
Q ss_pred h-h-ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 225 K-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 225 ~-~-~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
. . .++.++||+|++. +.+.+|+.+|+.+.+.... ... .++++.++++.++|.+.. + +-+..+..|||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~-~-~~~~~~~~LS~Gq 145 (254)
T PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAA-R-VLKLYPFEMSGGM 145 (254)
T ss_pred ccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChh-h-hhhcCCcccCHHH
Confidence 3 2 2357999999974 4556799999877543211 111 235688899999997521 0 1123457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 899999999976 4667899999999999999999
Q ss_pred HHHHH
Q 005488 380 ASEAM 384 (694)
Q Consensus 380 ~~~~~ 384 (694)
++++.
T Consensus 225 ~~~~~ 229 (254)
T PRK10418 225 VETLF 229 (254)
T ss_pred HHHHh
Confidence 98864
No 234
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=350.89 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=182.5
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|+++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 469999999998 235699999999999999999999999999999999996532 145899999999863
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
. .+++.++|++|++.+|+. ||+||+.+....+. ... ...+++.++++.+||.+...... +..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCH
Confidence 1 346789999999988875 99999998754321 122 34556888999998853211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE-EEeCCeEEEe
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~-vL~~G~iv~~ 377 (694)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+++|+++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 4677899975 6799999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
No 235
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.1e-41 Score=334.11 Aligned_cols=191 Identities=52% Similarity=0.897 Sum_probs=164.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-~~ 227 (694)
.|+++||+++|... +...++++|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~--~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSS--PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecC--CCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 58999999998321 0011367999999999999999999999999999999999965112458999999998864 45
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999989999999864210 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865577889999999999998764
No 236
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.4e-41 Score=340.14 Aligned_cols=210 Identities=30% Similarity=0.510 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||++.|..+ .+++.+|+|+||++++|++++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 7899999988311 12367999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++|++|++.+++.+|+.||+.++.... .....++..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 24578999999999998899999999875432 1133445566789999999997766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. +.+.||++++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 4899999999975 4589999999999986
No 237
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.7e-41 Score=350.28 Aligned_cols=226 Identities=24% Similarity=0.449 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecccc-cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
.|+++||+++|...... ...++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 58999999998310000 0014679999999999999999999999999999999999543 468999999998742
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 005488 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (694)
.+++.++|++|++ .+++..|+.||+.+..... ......+..++++++++.+|+. +..++ .+..||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 4667789999998754211 1123444556789999999996 34443 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999765 899999999975 4667899999999999999
Q ss_pred ecCHHHHH
Q 005488 377 FGKASEAM 384 (694)
Q Consensus 377 ~G~~~~~~ 384 (694)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998864
No 238
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=347.29 Aligned_cols=222 Identities=20% Similarity=0.322 Sum_probs=185.3
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeC
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~ 223 (694)
++.+.+++++++| +++++|+|+||++++||+++|+|+||||||||+++|+|.+... +.+|+|.++|+++
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 3468999999987 3467999999999999999999999999999999999965320 2589999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 005488 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (694)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (694)
.. .+++.++|++|++.++ .+|++||+.++...+. . ..+..+++.++++.++|.+..+... +..++.||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 151 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLS 151 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCC
Confidence 42 3467799999999988 5899999998764321 1 2233467888999999864332222 23467899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-------
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------- 370 (694)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++.+.||++++|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999964 799999999976 4678899999996
Q ss_pred -CCeEEEecCHHHHH
Q 005488 371 -KGSLLYFGKASEAM 384 (694)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (694)
+|++++.|+++++.
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999999998864
No 239
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.3e-41 Score=337.62 Aligned_cols=198 Identities=28% Similarity=0.504 Sum_probs=169.5
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h---
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---~--- 225 (694)
++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhH
Confidence 36888887 24579999999999999999999999999999999999653 45899999999853 1
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 24568999999999999899999999875432 223445566788999999997766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (694)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ..+.||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877999999999985 34689999875
No 240
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=348.12 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~- 224 (694)
.|+++||+++| +++++|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 69999999998 235799999999999999999999999999999999995431 1 25899999998873
Q ss_pred -----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 005488 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (694)
..+++.++|++|++.+++ .||+||+.+....+ ... ....+++.++++.+++.+..+.. -+..+..||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 234678999999999887 49999999875432 111 22345566777887774321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe---------
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~--------- 370 (694)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999975 5788999999998
Q ss_pred CCeEEEecCHHHHH
Q 005488 371 KGSLLYFGKASEAM 384 (694)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (694)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
No 241
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-41 Score=346.36 Aligned_cols=215 Identities=32% Similarity=0.518 Sum_probs=174.2
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++|. ..++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHH
Confidence 47899999982 122369999999999999999999999999999999999653 468999999988642
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCCCCCH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (694)
..++.++|++|++.+++ .||+||+.+.... ....... ..+.+.++.+ ++.+..+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34677999999999886 6999999875321 1111111 1234555555 4443333 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-I-ENADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-H-hhCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999964 8999999999864 5 459999999999999999
Q ss_pred CHHHHHHH
Q 005488 379 KASEAMAY 386 (694)
Q Consensus 379 ~~~~~~~~ 386 (694)
+++++...
T Consensus 219 ~~~~~~~~ 226 (234)
T cd03251 219 THEELLAQ 226 (234)
T ss_pred CHHHHHHc
Confidence 98887543
No 242
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.9e-40 Score=343.21 Aligned_cols=229 Identities=27% Similarity=0.343 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++++|+|+|++|++|++++|+||||||||||+++|+|....++.+|+|.++|+++..
T Consensus 2 i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 7899999998 2456999999999999999999999999999999999964213468999999988742
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhc-cC--C-CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHH
Q 005488 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALL-RL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGG 299 (694)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGG 299 (694)
. .++.++|++|++.+++.+|+.+++.+.... +. . .........+.+++.++.+++++ ..++.+ .+.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHH
Confidence 1 235699999999998888887776543211 10 0 01112233456778899999963 333322 1379999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEec
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFG 378 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~G 378 (694)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++.. +... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEECCeEEEeC
Confidence 9999999999999999999999999999999999999999998778999999999763 4454 8999999999999999
Q ss_pred CHHHHHHHHHhcCC
Q 005488 379 KASEAMAYFSSIGC 392 (694)
Q Consensus 379 ~~~~~~~~f~~~G~ 392 (694)
+++.+ ..+...++
T Consensus 229 ~~~~~-~~~~~~~~ 241 (248)
T PRK09580 229 DFTLV-KQLEEQGY 241 (248)
T ss_pred CHHHH-HHHHhcCC
Confidence 98854 44444433
No 243
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.9e-41 Score=370.97 Aligned_cols=228 Identities=26% Similarity=0.436 Sum_probs=194.5
Q ss_pred eeEEEEeEEEEEeeccc---ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~ 224 (694)
+.++++||++.|..++. ...+...+++||||++++||++||||+||||||||.++|+|.. .| .+|+|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P-~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PP-SSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CC-CCceEEEeCcccc
Confidence 46899999999965321 1123467999999999999999999999999999999999854 34 6899999998731
Q ss_pred ------hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 225 ------~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
...++++-+||||| .|.|.+||+++|.-....... ...++.++++.++++.+||+.. +.++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 23567788899986 589999999999987654322 2356677889999999999842 445789999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
|||||||++|||||+.+|++|++|||||+||+..+.++++.|+++.++ |.|.|+||||+. .+...||||++|++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999865 999999999976 477899999999999999
Q ss_pred EecCHHHHH
Q 005488 376 YFGKASEAM 384 (694)
Q Consensus 376 ~~G~~~~~~ 384 (694)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888874
No 244
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.9e-41 Score=343.79 Aligned_cols=201 Identities=31% Similarity=0.468 Sum_probs=170.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHH
Q 005488 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (694)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (694)
|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++... ....+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999653 4689999999987532 2235899999999998999999998
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005488 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (694)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 332 (694)
......+ ...+.+..+++.++++.+||.+..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233444556788999999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 333 ~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
.+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999765 899999999976 46788999999999999998876543
No 245
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-41 Score=323.22 Aligned_cols=217 Identities=29% Similarity=0.488 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.+..++++.+|.. ..+.+|+|+|++|.+||.++++||||||||||||+++|... +..|+|.+||+++... -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4677888888832 23569999999999999999999999999999999999543 4589999999998531 2
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
..-|.|||++.|+|.+||.||+.|+..++ .+.++++.+++.+.+..+||.+..+. ++.+||||||||+.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHH
Confidence 23589999999999999999999999886 57889999999999999999876654 45799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC--CeEEEecCHHHH
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEA 383 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~ 383 (694)
||..+|++|+||||+++||.-+++++.++|-++++. |+.+++|||+..+ ..-++++++||+. |||+..-+++=.
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~ 222 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFA 222 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHH
Confidence 999999999999999999999999999999999864 9999999999765 5567999999985 799988777633
No 246
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-40 Score=344.21 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-----C
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~-----~ 223 (694)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|++ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccccccc
Confidence 58999999998 23569999999999999999999999999999999999643 458999999976 4
Q ss_pred Ch----h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 005488 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (694)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (694)
.. . .++.++|++|++. +++.+|+.||+.+..... . ........+++.++++.+|+.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 31 1 2356999999974 455679999997643211 1 0111234567889999999963 4443 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+...+|++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999998764 899999999975 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 005488 372 GSLLYFGKASEAM 384 (694)
Q Consensus 372 G~iv~~G~~~~~~ 384 (694)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7e-41 Score=351.67 Aligned_cols=213 Identities=22% Similarity=0.383 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++|. .+.+.+|+|+||+|++||+++|+||||||||||+++|+|.+. .+|+|.+||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCH
Confidence 489999999983 234569999999999999999999999999999999998653 47999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCC
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (694)
.+++.|+||+|++.+|+. ||+||+.... ... .+++.+.++.+||.+.. ++.+++ ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 467889999999999975 9999996421 112 23456677777876443 334433 345699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++. .+ ..||||++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 4899999999985 34 45999999999999999
Q ss_pred cCHHHHHH
Q 005488 378 GKASEAMA 385 (694)
Q Consensus 378 G~~~~~~~ 385 (694)
|++++++.
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999864
No 248
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.2e-41 Score=346.13 Aligned_cols=218 Identities=30% Similarity=0.503 Sum_probs=172.2
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
++++|++++|.. ..++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~-----~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPS-----RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCC-----CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHH
Confidence 468999998821 123579999999999999999999999999999999999643 468999999988742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
..++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.++++.+ +...++.. +..+..|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 144 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSL--PDGYDTLV-GERGSQLSGGQ 144 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhh--ccccceee-ccCCccCCHHH
Confidence 24567999999998886 69999998753211 1111111 122233333 11222222 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 79999999999764 4 47999999999999999998
Q ss_pred HHHHHH
Q 005488 381 SEAMAY 386 (694)
Q Consensus 381 ~~~~~~ 386 (694)
+++..+
T Consensus 222 ~~~~~~ 227 (238)
T cd03249 222 DELMAQ 227 (238)
T ss_pred HHHhhc
Confidence 887654
No 249
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-41 Score=343.47 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++|. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCH
Confidence 489999999882 13469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCC
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVS 297 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~LS 297 (694)
.+++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+. .++.+ +..+..||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 356779999999998875 999999875321 111 122333333333221 12222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999864 4 56999999999999999
Q ss_pred cCHHHHHH
Q 005488 378 GKASEAMA 385 (694)
Q Consensus 378 G~~~~~~~ 385 (694)
|+.+++.+
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877654
No 250
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1e-40 Score=340.91 Aligned_cols=210 Identities=24% Similarity=0.408 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCH
Confidence 69999999988 3457999999999999999999999999999999999954 2468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqR 303 (694)
.+++.++|++|++.+++ .||+||+.+....+. .. ...+++.++++.+|+. ...++ .+..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHH
Confidence 34678999999999887 499999988643321 11 1234577899999995 34443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe-CCeEEEecCHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKAS 381 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~-~G~iv~~G~~~ 381 (694)
++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++.. + +.||++++|+ ++..+..|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999999764 8999999999764 4 5799999995 56667777764
No 251
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.6e-40 Score=377.53 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=185.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh---
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~~--- 225 (694)
|+++||+++| +++++|+||||++++||+++|+||||||||||+++|+|... | +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCH
Confidence 7899999998 24579999999999999999999999999999999999653 3 258999999998753
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.+||.+..+. ..+..|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999865322110 12233445678899999999764421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999888999999999975 4678899999999999999998754
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=351.81 Aligned_cols=225 Identities=24% Similarity=0.431 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. ++.+|+|.++|.++.
T Consensus 44 ~~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 369999999998 345799999999999999999999999999999999996532 146899999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC--C-------CCC-HHHHHHHHHHHHHHcCCCccccccc
Q 005488 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N-------TLT-KQQKEKRAIDVINELGLERCQDTMI 288 (694)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~--~-------~~~-~~~~~~~v~~~l~~lgL~~~~~t~v 288 (694)
. .+++.++|++|++.+++ .||+||+.++...... . ... .....+++.++++.+++.+..+...
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 2 34678999999998887 5999999987532100 0 011 1223566888899998854332222
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEE-E
Q 005488 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-I 367 (694)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i-~ 367 (694)
+..++.||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++ +
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~ 271 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAV 271 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEE
Confidence 345678999999999999999999999999999999999999999999999976 589999999976 467889997 5
Q ss_pred EEeCCeEEEecCHHHHH
Q 005488 368 LLGKGSLLYFGKASEAM 384 (694)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (694)
+|++|++++.|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988764
No 253
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=347.56 Aligned_cols=219 Identities=23% Similarity=0.388 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|+++||+++|. +++++|+|+|++|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhc
Confidence 589999999982 23579999999999999999999999999999999999643 458999999998754333
Q ss_pred -CcEEEEccCCcCC--CCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 229 -~~i~yV~Q~~~l~--~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
+.++|++|++.+. ...+++||+.++...... ........++++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011223345678889999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|++++.|+++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999877999999999975 467889999877 8999999998876
No 254
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=375.80 Aligned_cols=216 Identities=25% Similarity=0.396 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCH
Confidence 69999999998 24569999999999999999999999999999999999543 458999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
.+++.++||+|++.+++.+||+||+.++............+..+++.++++.+||.+..+. .+.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-----PLKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-----chhhCCHHHHHH
Confidence 2467899999999999999999999986421111112334455678899999999765554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999878999999999976 46788999999999999877653
No 255
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=342.98 Aligned_cols=221 Identities=25% Similarity=0.441 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE------ECCEe
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT------YNDHP 222 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~------~~G~~ 222 (694)
.|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|... | .+|+|. ++|++
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~-~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-I-YDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-C-CcCceeEcCEEEECCcc
Confidence 69999999998 45679999999999999999999999999999999999543 3 355554 44555
Q ss_pred CC----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 223 ~~----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
+. ...++.++|++|++.+++.+||+||+.++..... ...+++..+++.++++.+++.+...... +..+..|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 43 1356789999999999998999999998754321 1123445567888999999863211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||+|+.+|+++||||||+|||..++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|+++..|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999965 699999999975 466889999999999999999
Q ss_pred CHHHHH
Q 005488 379 KASEAM 384 (694)
Q Consensus 379 ~~~~~~ 384 (694)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998865
No 256
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-40 Score=342.70 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~~~G~~~~ 224 (694)
..|+++||+++| +++++|+|+|++|++||+++|+|+||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 369999999998 245799999999999999999999999999999999996542 2 15899999997652
Q ss_pred --------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 005488 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (694)
Q Consensus 225 --------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (694)
..+++.++|++|++.+++. ||+||+.++.... ... ....++++.+.++.+++.+...... +..+..
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 161 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFN 161 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCccc
Confidence 1346789999999999985 9999999875322 111 2223456778888887743211111 234568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 689999999975 467889999999999999
Q ss_pred EecCHHHHH
Q 005488 376 YFGKASEAM 384 (694)
Q Consensus 376 ~~G~~~~~~ 384 (694)
+.|+++++.
T Consensus 240 ~~g~~~~~~ 248 (265)
T PRK14252 240 EFGATDTIF 248 (265)
T ss_pred EeCCHHHHH
Confidence 999988764
No 257
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-40 Score=338.64 Aligned_cols=209 Identities=30% Similarity=0.545 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++|. ..++.+|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCH
Confidence 478999999882 123569999999999999999999999999999999999643 468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCCCCCH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg------~~~~~~LSG 298 (694)
..++.++|++|++.+++ .||+||+.+.... .. .+++.+.++.+++.+..+.... ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 34567999999998887 6999999874211 11 2345567777787665544221 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. + +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL-L-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999876 4899999999863 4 799999999999998764
No 258
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=376.07 Aligned_cols=216 Identities=20% Similarity=0.312 Sum_probs=183.0
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----h
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S 226 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-----~ 226 (694)
++||+++| +++++|+|+||++++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHH
Confidence 36888888 34579999999999999999999999999999999999643 458999999998742 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.++||+|++.+++.+||+||+.++............+..++++++++.+|+.+..++. +.+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 3567999999998999999999998764211010112334456788999999998666654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999999888999999999975 46788999999999999999997664
No 259
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.9e-40 Score=338.47 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=171.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCChh-c-cCcEEEEccCCc--CCCCC
Q 005488 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSKS-L-KSKIGFVTQDDV--LFPHL 244 (694)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~~~-~-~~~i~yV~Q~~~--l~~~l 244 (694)
+|+|+|+++++||+++|+||||||||||+|+|+|... | +.+|+|.++|+++... . ++.++|++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999653 3 1589999999987532 2 357999999984 56678
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005488 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (694)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTs 324 (694)
|++||+.+...... ....+..+++.++++.++|++.. ...+..+..|||||||||+|||+|+.+|+||||||||+
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987653221 12233456788999999997320 01123456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++|+++..|+++++.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999864 899999999976 477889999999999999999998874
No 260
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=382.73 Aligned_cols=227 Identities=24% Similarity=0.380 Sum_probs=189.2
Q ss_pred eeEEEEeEEEEEeeccc--c-cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGM--T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~ 224 (694)
..|+++||++.|..+.. . ....+.+|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 36999999999832100 0 0012469999999999999999999999999999999999653 45899999999874
Q ss_pred h-------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 005488 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (694)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (694)
. .+++.|+||+|++ .+++.+||.||+.+...... .....+..+++.++++.+||+ +..++ +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2456899999997 58889999999998654321 112344557788999999995 44443 467
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |.|||++|||+. .+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999875 899999999976 4778899999999999
Q ss_pred EEEecCHHHHH
Q 005488 374 LLYFGKASEAM 384 (694)
Q Consensus 374 iv~~G~~~~~~ 384 (694)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999874
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.1e-40 Score=375.83 Aligned_cols=221 Identities=29% Similarity=0.447 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC----------
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~---------- 219 (694)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|.+..++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 3457999999999999999999999999999999999964212458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEccC-CcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHH
Q 005488 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (694)
Q Consensus 220 -------------G~~~----------~----~~~~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v 271 (694)
|.++ . ...++.++||+|+ +.+++.+||+||+.++.... .....+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3222 0 1235679999997 67888899999999875432 13344556788
Q ss_pred HHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Q 005488 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (694)
Q Consensus 272 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~ 350 (694)
.++++.+||++..+. .+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 999999999876654 4568999999999999999999999999999999999999999999999975 4899999
Q ss_pred EecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 005488 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (694)
Q Consensus 351 ~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (694)
++|++.. +.+.||+|++|++|++++.|+++++...+
T Consensus 225 vtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999764 66789999999999999999998877654
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.3e-40 Score=331.25 Aligned_cols=190 Identities=31% Similarity=0.437 Sum_probs=162.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEe--------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 4789999988 2356999999999999999999999999999999999964223468999999998753
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
. .++.++|++|++.+++.+|+++++. .....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~---------------------------------------~~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR---------------------------------------YVNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh---------------------------------------hccccCCHHHHHHH
Confidence 1 2446999999999998888887760 01136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh-ccCEEEEEeCCeEEEecCHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ .+|++++|++|++++.|+. ++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-EL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HH
Confidence 9999999999999999999999999999999999999877899999999986 3555 7999999999999999954 46
Q ss_pred HHHHH
Q 005488 384 MAYFS 388 (694)
Q Consensus 384 ~~~f~ 388 (694)
..+|.
T Consensus 192 ~~~~~ 196 (200)
T cd03217 192 ALEIE 196 (200)
T ss_pred Hhhhc
Confidence 55553
No 263
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-41 Score=320.84 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=192.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++|+.++| ++..+|++||++.+.|+++.|+|.|||||||+|++|. .+.. +..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58899999888 5678999999999999999999999999999999998 4554 45899999998762
Q ss_pred -------------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 005488 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (694)
Q Consensus 225 -------------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (694)
+.+|.+.|+|||+.+|+++|||.||+.-+-..-+ ..++.+..++++.+|+.+|+.+..|.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1356789999999999999999999976532111 35677888899999999999877763
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... .-+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 677899999999999999999999999999999999999999999999999999999999999764 4567899999999
Q ss_pred CeEEEecCHHHHH
Q 005488 372 GSLLYFGKASEAM 384 (694)
Q Consensus 372 G~iv~~G~~~~~~ 384 (694)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999874
No 264
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.3e-40 Score=342.07 Aligned_cols=200 Identities=29% Similarity=0.466 Sum_probs=172.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCcCCCCCCHH
Q 005488 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (694)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~ 247 (694)
+|+|+||++++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 8999999998742 3456799999998888789999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 005488 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (694)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~-------~P~iLlLD 320 (694)
||+.+.... ....++..++++++++.+||.+..++ .++.||||||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGR-----SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999986321 12233445678899999999766554 346899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
|||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877999999999975 477899999999999999999988763
No 265
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.3e-40 Score=330.01 Aligned_cols=199 Identities=24% Similarity=0.420 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---~ 225 (694)
+|+++|++++| +.+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++. .
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchH
Confidence 37899999998 23569999999999999999999999999999999999653 46899999999874 2
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..++.++|++|++.+++.+||+||+.+....+. . ...++++++++.+||.+..++ .+..||||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~ 139 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDV-----PVRQLSAGQQRRVA 139 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHH
Confidence 356789999999999999999999998754321 1 234567889999999766554 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (694)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. +-+..+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999999999999999999998778999999999764 54555677766
No 266
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-40 Score=323.48 Aligned_cols=170 Identities=31% Similarity=0.607 Sum_probs=153.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
++++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRY--------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHh
Confidence 4689999988 23469999999999999999999999999999999999543 458999999998752 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.++|++|++.+++.+||+||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999998899999973 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.+|++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999975 46678999999999974
No 267
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-40 Score=339.89 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=171.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++|. +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHH
Confidence 47899999872 1356999999999999999999999999999999999954 3568999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
.+++.++|++|++.+++ .||+||+.+.... .......+ .+.+.++.+ +...++.+. ..++.|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhh-cCCCcCCHHH
Confidence 34677999999999886 6999999875321 11111111 122233322 222233332 3357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
|||++|||+|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 9999999999764 4 45999999999999999998
Q ss_pred HHHH
Q 005488 381 SEAM 384 (694)
Q Consensus 381 ~~~~ 384 (694)
+++.
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 7764
No 268
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=381.96 Aligned_cols=225 Identities=22% Similarity=0.360 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC-----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~----- 223 (694)
.|+++||+++|.. ..++.++|+||||++++||++||+||||||||||+|+|+|.+. +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~----~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQ----EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecC----CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 6999999999831 1123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005488 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (694)
Q Consensus 224 --------~~----~~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (694)
.. .++ +.||||+|++ .+++.+||+||+.++..... .....+.++++.++++.+||++..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~ 161 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--I 161 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--H
Confidence 11 122 4799999998 68888999999999865321 2345555678899999999964210 1
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEE
Q 005488 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
-+.++.+|||||||||+|||||+.+|+||||||||++||+.++.++.+.|++++++ |+|||++||++. .+.+.||+|+
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~ 240 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVL 240 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 12456789999999999999999999999999999999999999999999999865 899999999975 4678999999
Q ss_pred EEeCCeEEEecCHHHHH
Q 005488 368 LLGKGSLLYFGKASEAM 384 (694)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (694)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988764
No 269
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-40 Score=314.71 Aligned_cols=212 Identities=32% Similarity=0.504 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++++++.+.. ..+...||++|++.|++||.+||||||||||||||-+|+|. .. +++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~-~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DD-PSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CC-CCCceEEEcCcchhhcCH
Confidence 5888999887632 23556899999999999999999999999999999999994 33 468999999999852
Q ss_pred ----hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
.+ .+++|+|||...|.|+||..||+...+.++.. ...+....+.++++.+||.+..+ .++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLT-----HYPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccc-----cCccccCchH
Confidence 23 46799999999999999999999998877642 23344566888999999987554 3578999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
+|||+||||+...|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +...|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999975 4999999999985 567899999999999975
No 270
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.3e-41 Score=420.67 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=183.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..|+|+||+|+|. .+.+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|.+||.++.
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346799999999999999999999999999999999974 43 4899999999986
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCC
Q 005488 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~L 296 (694)
+.+|++|+|||||+.+|+. ||||||.... ..+ ++++.++++..+| +++.||.+|+. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 3588999999999999975 9999996421 122 2345556665554 56789999864 3569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
|||||||++|||||+++|+|||||||||+||..+...|.+.|++.. +++|||+++|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999864 56799999999999999
Q ss_pred ecCHHHHHH
Q 005488 377 FGKASEAMA 385 (694)
Q Consensus 377 ~G~~~~~~~ 385 (694)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999874
No 271
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.9e-40 Score=375.87 Aligned_cols=227 Identities=27% Similarity=0.451 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEEeeccc---ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 005488 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~ 224 (694)
..|+++||++.|..+.. ...+++.+|+||||+|++||+++|+||||||||||+|+|+|.+ + .+|+|.++|+++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEcc
Confidence 36999999999831100 0001357999999999999999999999999999999999964 3 5899999998874
Q ss_pred h-------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 005488 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (694)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (694)
. .+++.++||+|++ .+++.+||+||+.++...+. ......+.++++.++++.+||. +..+. .+.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHR-----YPA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhc-----CCc
Confidence 2 1356799999997 48888999999998753221 1123344556788999999996 34554 457
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999875 899999999975 4678899999999999
Q ss_pred EEEecCHHHHH
Q 005488 374 LLYFGKASEAM 384 (694)
Q Consensus 374 iv~~G~~~~~~ 384 (694)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999998874
No 272
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-39 Score=330.65 Aligned_cols=202 Identities=23% Similarity=0.335 Sum_probs=173.6
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-h
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-S 226 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-~ 226 (694)
..|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~-~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-H-VESGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-C-CCCeeEEECCEEccchh
Confidence 369999999987 3456999999999999999999999999999999999954 3 458999999998753 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.++|++|++.+++.+|++||+.+....+. . ..++.+.++++.++|++..++. +..||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 148 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLAL 148 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHH
Confidence 34569999999999998999999988754321 1 1234567888999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|+.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999888999999999976 47889999999863
No 273
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1e-39 Score=327.89 Aligned_cols=195 Identities=26% Similarity=0.427 Sum_probs=169.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hh
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---~~ 226 (694)
|+++||++.| +++.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHH
Confidence 4789999988 34579999999999999999999999999999999999543 45899999998864 34
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.++|++|++.+++.+||+||+.+.... . .+++++++++.+|+++..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999885311 1 235678899999998766543 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (694)
||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++.. +...+|+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999988779999999999764 66789999887
No 274
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1e-39 Score=407.64 Aligned_cols=224 Identities=26% Similarity=0.393 Sum_probs=197.9
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+++|. ++++.+|+|||+.|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3699999999982 123679999999999999999999999999999999999653 458999999999852
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.|||+||++.+++.+||+|||.+.+..+ ..+.++.+++++++++.+||.+..|+.+ +.|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHH
Confidence 34678999999999999999999999877654 2344455667889999999988777654 68999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+||+||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||||++|++|+++..|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 578899999999999999999999998
Q ss_pred HHHH
Q 005488 385 AYFS 388 (694)
Q Consensus 385 ~~f~ 388 (694)
+.|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
No 275
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.5e-39 Score=371.80 Aligned_cols=224 Identities=23% Similarity=0.413 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~~~G~~~~~ 225 (694)
.|+++||+++|..+ +..+++|+|+||+|++||+++|+||||||||||+|+|+|.+..+ +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 69999999998310 12357999999999999999999999999999999999966421 258999999998742
Q ss_pred -------hcc-CcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 005488 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (694)
Q Consensus 226 -------~~~-~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~ 292 (694)
..+ +.+|||+|++. +++.+||+||+.+..... ...+..+..++++++++.+||.+. .+. .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999974 667789999998654321 123345566788999999999752 243 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999875 899999999976 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 005488 372 GSLLYFGKASEAM 384 (694)
Q Consensus 372 G~iv~~G~~~~~~ 384 (694)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
No 276
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-40 Score=373.29 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||++.|.. ++++++|+|+||+|++||+++|+||||||||||+|+|+|.+ .|+.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 6999999998721 12356999999999999999999999999999999999964 33358999999998742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 005488 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (694)
..++.++||+|++ .+++.+||.||+.++....... ....++..++++++++.++|. +..+.. +..||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998764211110 012334456788999999996 455543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999999
Q ss_pred cCHHHH
Q 005488 378 GKASEA 383 (694)
Q Consensus 378 G~~~~~ 383 (694)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987654
No 277
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7e-40 Score=333.21 Aligned_cols=208 Identities=27% Similarity=0.455 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++|. ..++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCH
Confidence 478999999982 12357999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCC
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (694)
.+++.++|++|++.+++ .||+||+.+.. ... .+++.+.++.+++.+.. ++.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 59999997531 111 12344555555554332 2222 23567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 7899999999864 4 45999999999999988
Q ss_pred cC
Q 005488 378 GK 379 (694)
Q Consensus 378 G~ 379 (694)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
No 278
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.9e-39 Score=370.40 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC-CEe---C
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~-G~~---~ 223 (694)
..|+++||+++|... ..+++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccc
Confidence 369999999998310 0123579999999999999999999999999999999999653 458999996 532 2
Q ss_pred C-------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 005488 224 S-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (694)
Q Consensus 224 ~-------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~t~vg~~ 291 (694)
. ...++.++||+|++.+++.+||+||+.+..... ...+..++++.++++.+||.+ ..+ .
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILD-----K 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhh-----C
Confidence 1 123567999999999999999999998764321 223334567889999999964 233 3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 005488 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
.+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999765 899999999976 4778999999999
Q ss_pred CCeEEEecCHHHHHH
Q 005488 371 KGSLLYFGKASEAMA 385 (694)
Q Consensus 371 ~G~iv~~G~~~~~~~ 385 (694)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988653
No 279
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-39 Score=321.75 Aligned_cols=171 Identities=36% Similarity=0.631 Sum_probs=153.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchh
Confidence 4789999988 23579999999999999999999999999999999999543 458999999988642
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3467899999999999889999998642 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.+|++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999887 899999999975 4666899999999985
No 280
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.9e-39 Score=403.55 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=196.5
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||++.|. ++++.+|+|+|+++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4699999999982 124679999999999999999999999999999999999653 458999999999853
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..|+.+||++|++.+++.+||+|||.|.++.+. .+.++.+++++++++.+||.+..+.. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 356789999999999999999999999876542 33445567789999999998877654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+||+||+.+|+||||||||+|||+.++..+.+.|++++ +|+|||++||++. ++..++|||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999975 577889999999999999999999998
Q ss_pred HHHH
Q 005488 385 AYFS 388 (694)
Q Consensus 385 ~~f~ 388 (694)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7764
No 281
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-39 Score=357.25 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=192.6
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|- +. +++|+|.+||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-~~-p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-YP-PDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-cc-CCCceEEECCEEccCCC
Confidence 369999999998 567899999999999999999999999999999999994 43 56899999999875
Q ss_pred --hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 005488 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (694)
+....-|+.|+||..|+|+|||.|||.++...+. ..-+.+....+++.++|+.+|+....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 2345679999999999999999999998865433 123567778888999999999964466655 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|.|.|||||..+++|||||||||+|+......+.+.+++|+++|.+||+|||++. ++++.||||.||.||+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999975 6999999999999999998887
No 282
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-39 Score=336.65 Aligned_cols=202 Identities=25% Similarity=0.459 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------c
Confidence 69999999998 24579999999999999999999999999999999999653 4589999987 2
Q ss_pred CcEEEEccCCcCCCC--CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~--lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
..++|++|++.+++. .|+.+++.+. + ... .+++.++++.+||.+..++. +..||||||||++|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999887765 3788877542 1 111 24567889999998766653 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|+ |++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999999999999999999999775 899999999976 4678899999996 4799999988763
No 283
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.7e-39 Score=323.82 Aligned_cols=194 Identities=25% Similarity=0.395 Sum_probs=164.8
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~-~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-R-PDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCccEEEECCEEcccchHH
Confidence 4789999988 3457999999999999999999999999999999999954 3 458999999998642 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
.++.++|++|++.+++.+||+||+.+....+. . .++++.++++.+||.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45789999999999988999999988654321 1 134577889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEE
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~v 368 (694)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++.. -.+|+++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998789999999999864 34577654
No 284
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-41 Score=322.36 Aligned_cols=220 Identities=25% Similarity=0.454 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
+++++||+++| +++.||+|+|++|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 47899999998 5778999999999999999999999999999999999 5553 46899999999985
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
+.+.++++.+-|+..+...+||+|-+.|+...... ....++.+..+.+.++.++|++..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq-GRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ-GRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC-CCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 35778899999999998899999999998533222 233456677899999999999887754 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
-||+.|+.+.+.++||||.++||-..+.++++.|++++++ |+||+++.||.+. .-.++|+|+-|++|+++..|+++|+
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999976 9999999999875 5568999999999999999999998
Q ss_pred HH
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
++
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 63
No 285
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.6e-39 Score=331.84 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=168.5
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
+.++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh----
Confidence 5677777766 45679999999999999999999999999999999999543 468999999987531
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
..+...+++.+||+||+.+..... .....+.++++.++++.++|++..++. +.+||||||||++|||+
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 112234556789999999875432 123344556778889999998777654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998765
No 286
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-39 Score=324.77 Aligned_cols=193 Identities=26% Similarity=0.391 Sum_probs=165.2
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 2 LDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHH
Confidence 7899999998 34579999999999999999999999999999999999543 468999999998752 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
++++++|++|++.+++.+||+||+.+..... . .+.++.++++.+++++..+.. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~l 138 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVAL 138 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHH
Confidence 5678999999999988899999999864211 1 124678899999997655543 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++.. ...+|..+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999997779999999999754 46677644
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.7e-39 Score=319.97 Aligned_cols=175 Identities=33% Similarity=0.603 Sum_probs=154.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
|+++|++++|. ..++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .
T Consensus 1 i~~~~~~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYP------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeC------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHHHHHH
Confidence 47899999982 122469999999999999999999999999999999999543 468999999998742 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 5678999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++.. + ..+|++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 48999999999864 4 579999999999998765
No 288
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=8.2e-40 Score=333.97 Aligned_cols=211 Identities=32% Similarity=0.521 Sum_probs=169.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++|++++|.. +..+++|+|+|++|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcC
Confidence 46999999999831 11246999999999999999999999999999999999964 3468999999988642
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGer 301 (694)
..++.++|++|++.+++ .||+||+.++.................++++++.+ |+.+..+. .+..||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34577999999998886 59999998754211000000111122356778887 66544443 3578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++.. + ..||+|++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 6899999999864 4 45999999999974
No 289
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=332.11 Aligned_cols=218 Identities=22% Similarity=0.306 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeecc------------cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccE
Q 005488 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~ 215 (694)
..++++||++.|.... ......+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4689999998876421 001234579999999999999999999999999999999999653 45899
Q ss_pred EEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 005488 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (694)
Q Consensus 216 I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (694)
|.++|. +++++|++.+++.+|+.||+.+..... ....++..+.+.++++.++|.+..+. .++.
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQ-----PVKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----Cccc
Confidence 999985 467788887888899999998765432 12344445567788888898776654 3468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|.++++.|+|||+++|++. .+.+.+|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999975 467789999999999999
Q ss_pred EecCHHHHHH
Q 005488 376 YFGKASEAMA 385 (694)
Q Consensus 376 ~~G~~~~~~~ 385 (694)
+.|+++++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999988765
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2e-39 Score=318.19 Aligned_cols=169 Identities=34% Similarity=0.622 Sum_probs=150.7
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++|. ..++++++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.+||+++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHH
Confidence 47899999872 123569999999999999999999999999999999999643 458999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
.+++.++|++|++.+++. ||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHH
Confidence 356789999999988874 999987 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 68999999999974
No 291
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.4e-39 Score=337.31 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=172.8
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++|++++|. ..++.+|+|+|++|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCC
Confidence 3699999999982 123579999999999999999999999999999999999643 468999999998753
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
.+++.++|++|++.+++ .|++||+.... ....... ...+.+.++.+ +...++.++ .....|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 45678999999998887 59999986421 1111111 11123333333 112233332 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++.. +. .||+|++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999874 44 59999999999999999
Q ss_pred CHHHHHH
Q 005488 379 KASEAMA 385 (694)
Q Consensus 379 ~~~~~~~ 385 (694)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.4e-39 Score=319.10 Aligned_cols=171 Identities=27% Similarity=0.518 Sum_probs=153.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++| +|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCH
Confidence 58999999864 8999999999999999999999999999999999643 458999999998752
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2467899999994 57888999999987420 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999877899999999975 57788999999999974
No 293
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.6e-40 Score=380.03 Aligned_cols=210 Identities=21% Similarity=0.272 Sum_probs=170.0
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+|+|+.+ ...++++|+|+|+++++||+++|+||||||||||+++|+|. ++| .+|+|.+||.++.+
T Consensus 336 ~~i~~~~v~f~y~~~---~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~p-~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAP---EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YIP-QEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCC---CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCC-CCcEEEECCEECCCCC
Confidence 469999999999321 00124699999999999999999999999999999999984 444 58999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCccCCCCCHHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI-GGSFVRGVSGGERK 302 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v-g~~~~~~LSGGerq 302 (694)
.+++.++||+||+.+|+. |+++|+. + ...++++.++++.+++.+..+..- |-+....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999965 8998841 1 123445677888888765433221 11113579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~-~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|++|||||+++|+||+|||||++||+.++..+.+.+. .+...|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 45556899999999985 4678999999999999854
No 294
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.5e-39 Score=326.92 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=169.2
Q ss_pred EEEEeEEEEEeeccccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC--CE--eCC
Q 005488 150 LKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYS 224 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~--G~--~~~ 224 (694)
|+++||+++|..+. +.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~--~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ--QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEeeccc--CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchh
Confidence 78999999983210 011 2479999999999999999999999999999999999543 458999998 43 432
Q ss_pred h-------hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCC
Q 005488 225 K-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRG 295 (694)
Q Consensus 225 ~-------~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~ 295 (694)
. .. ++.++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+. .+. .+.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 1 12 357999999999999999999998865322 12333445678889999999753 233 3578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999877999999999954 4557899998763
No 295
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.5e-39 Score=336.45 Aligned_cols=230 Identities=27% Similarity=0.493 Sum_probs=200.2
Q ss_pred CCeeEEEEeEEEEEeecccc-c--ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 005488 146 LPIYLKFTDVTYKVILKGMT-S--SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~-~--~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~ 222 (694)
.++.++.+||...|..++.. + .....++++||+++++||.++|||.||||||||-.+|.+ +.. .+|+|.++|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr-L~~--s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR-LIP--SQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh-hcC--cCceEEECCcc
Confidence 45679999999998765421 1 123569999999999999999999999999999999996 442 36999999999
Q ss_pred CCh-------hccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 005488 223 YSK-------SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (694)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (694)
+.. .+|+++-.|||||. |-|.+||.+-|.-+.....| ..+.+++++++.+.++++||+... -++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 852 36889999999984 88999999999988776543 578899999999999999996522 24689
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++|+||+. .+-.+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999965 4899999999986 467799999999999
Q ss_pred eEEEecCHHHHH
Q 005488 373 SLLYFGKASEAM 384 (694)
Q Consensus 373 ~iv~~G~~~~~~ 384 (694)
+||+.|+.+++.
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999885
No 296
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-39 Score=367.87 Aligned_cols=215 Identities=23% Similarity=0.423 Sum_probs=179.8
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++|+++.| . .+|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 264 ~~l~~~~l~~~~--------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 264 TVFEVRNVTSRD--------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRS 331 (510)
T ss_pred cEEEEeCccccC--------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCC
Confidence 369999999754 1 38999999999999999999999999999999999653 458999999988742
Q ss_pred ---hccCcEEEEccC---CcCCCCCCHHHHHHHHHhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 005488 226 ---SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (694)
Q Consensus 226 ---~~~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (694)
..++.+|||+|+ +.+++.+||+||+.++...+ ... . ......+++++++++.+||. +..++.
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 406 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN----- 406 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----
Confidence 245679999998 46888999999998753211 000 0 12223345678999999996 556654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.+.||++++|++|
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G 485 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG 485 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999888999999999975 577899999999999
Q ss_pred eEEEecCH
Q 005488 373 SLLYFGKA 380 (694)
Q Consensus 373 ~iv~~G~~ 380 (694)
++++.++.
T Consensus 486 ~i~~~~~~ 493 (510)
T PRK09700 486 RLTQILTN 493 (510)
T ss_pred EEEEEecC
Confidence 99988865
No 297
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8e-39 Score=322.80 Aligned_cols=198 Identities=26% Similarity=0.415 Sum_probs=167.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-~~ 227 (694)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhh
Confidence 58999999998 24569999999999999999999999999999999999543 458999999988642 25
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++|++.+++.+||+||+.+...... . ..+++.++++.+||.+..+. .++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHH
Confidence 6789999999988888999999988653321 1 12347889999999765554 3468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
|+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||+++|++.. + .. |+++.++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~-~~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-L-PG-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-h-cc-CcEEeecC
Confidence 99999999999999999999999999999999998789999999999763 4 33 88887743
No 298
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.4e-39 Score=366.63 Aligned_cols=221 Identities=21% Similarity=0.373 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++|.. ++++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. |+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCeEEEECCEECCCCCH
Confidence 6999999987621 123469999999999999999999999999999999999653 3358999999998742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 005488 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (694)
..++.+|||+|++ .+++.+||+||+.++...... ........++++.++++.++|.+ ..++. +..||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 3467799999995 588899999999886421110 01223344567889999999963 44543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999987
Q ss_pred cCHH
Q 005488 378 GKAS 381 (694)
Q Consensus 378 G~~~ 381 (694)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
No 299
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=303.42 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.|+++|+++.| +..++|.||+++.+.||.+.++||||+|||||++.|. .+.- +.+|+..+.|...+
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle~-p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLEM-PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHhC-CCCCeEEecccccccccC
Confidence 47899999988 5667999999999999999999999999999999998 4443 45899999876542
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
..+|+.+|.|+|+..|+|++||-|||.-+. ++. ..+++++...++.++++.+.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 157899999999999999999999997643 222 246778888899999999999988874 5678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-++++|.... ..+.+.+|+.|++|+|++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeecCeeEeec
Confidence 99999999999999999999999999999999999999999999999999999999653 56679999999999999999
Q ss_pred CHHH
Q 005488 379 KASE 382 (694)
Q Consensus 379 ~~~~ 382 (694)
+++-
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 9753
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.1e-39 Score=366.03 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
+|+++||+++| +++++|+|+|++|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCH
Confidence 58999999998 23469999999999999999999999999999999999653 458999999977532
Q ss_pred -hccCcEEEEccCCcC--C-C-----CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l--~-~-----~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
..++.++|++|++.+ + + .+||+|++.+. ....++++++++.+||++..+.. +.+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 235669999998643 1 1 46888887542 12345688899999998766654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999975 4778899999999999999
Q ss_pred ecCHHHHH
Q 005488 377 FGKASEAM 384 (694)
Q Consensus 377 ~G~~~~~~ 384 (694)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988754
No 301
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.1e-39 Score=322.89 Aligned_cols=198 Identities=21% Similarity=0.399 Sum_probs=164.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|++++|. ..++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYA------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeC------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCH
Confidence 599999999982 122469999999999999999999999999999999999543 458999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.++|++|++.+++ .||+||+.+.. .... +.+.+.++ + + ..+..|||||+||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 59999997531 1121 12333333 2 1 24578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .+|++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999864 44 4999999999999988863
No 302
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.6e-38 Score=316.16 Aligned_cols=177 Identities=32% Similarity=0.572 Sum_probs=151.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh------hccCcEEEEccCC--cC
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~------~~~~~i~yV~Q~~--~l 240 (694)
++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .+++.++|++|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999643 458999999998741 3456799999997 35
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005488 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (694)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 320 (694)
+ ..||+||+.+..... ....++..+++.++++.+||.+..++. +..||||||||++|||||+.+|++||||
T Consensus 82 ~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred c-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5 479999999875422 123444556788999999998766653 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 005488 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
|||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999974
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-38 Score=349.27 Aligned_cols=214 Identities=25% Similarity=0.349 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
+++++||++.|.. +..+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~-----~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD-----GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecCC-----CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee-----
Confidence 5889999888721 123579999999999999999999999999999999999653 4589999999752
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
++.+.+.+++.+||+||+.+..... ..+.++..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2223445667789999998854322 123444556678899999998766654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (694)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++++...|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 477889999999999999999998887544
No 304
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-38 Score=365.13 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=170.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++||+|+|+ +++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||+++.+
T Consensus 321 ~~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~ 391 (547)
T PRK10522 321 QTLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQ 391 (547)
T ss_pred ceEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCC
Confidence 3699999999983 234699999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--cCCCCCHHHH
Q 005488 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGER 301 (694)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~LSGGer 301 (694)
.++++++||+||+.+|+. |++|| + + . ..++.++++++.+++.+..+ .++. ....||||||
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-~----~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-P----ANPALVEKWLERLKMAHKLE--LEDGRISNLKLSKGQK 455 (547)
T ss_pred HHHHhhheEEEecChhHHHH-hhccc---c-----C-c----hHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCHHHH
Confidence 578899999999999974 88887 1 0 1 23345778888898875433 2221 1257999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987654 5899999999985 4678999999999999876
No 305
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=360.42 Aligned_cols=214 Identities=23% Similarity=0.414 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 588888863 26999999999999999999999999999999999653 458999999988742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCC
Q 005488 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (694)
..++.+|||+|++ .+++.+||+||+.+....... .....++.++++.++++.+||. +..++ .+..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ-----AIGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC-----chhhC
Confidence 2456799999996 578889999999875321110 0122334456788999999995 45554 35689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5778999999999999999
Q ss_pred ecCHHHH
Q 005488 377 FGKASEA 383 (694)
Q Consensus 377 ~G~~~~~ 383 (694)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987664
No 306
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.8e-38 Score=322.56 Aligned_cols=197 Identities=28% Similarity=0.432 Sum_probs=163.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCC--CCCHHHHHHHHHh
Q 005488 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (694)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~--~lTV~Enl~~~~~ 255 (694)
|+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .++.++|++|++.+++ .+|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4689999999999999999999999999543 458999999998643 4567999999987632 4799999987632
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005488 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (694)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 334 (694)
.... ........++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688899999998666553 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 335 ~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
.+.|++++++|+|+|+++|++. ++.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999976 477889999999 89999999988764
No 307
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.4e-38 Score=314.18 Aligned_cols=175 Identities=33% Similarity=0.584 Sum_probs=150.1
Q ss_pred EEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 005488 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (694)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~ 226 (694)
+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 1 ~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGY--------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEE--------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHH
Confidence 478999988 23569999999999999999999999999999999999543 468999999998742 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
+++.++|++| +++.+||.+..++ .+..||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456888888 4555666654443 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999776 899999999976 466889999999999998754
No 308
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=360.84 Aligned_cols=215 Identities=20% Similarity=0.371 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++++|++++ .+++|+|++|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCH
Confidence 5888888731 48999999999999999999999999999999999653 458999999998742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCC
Q 005488 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (694)
..++.++|++|++ .+++.+||.||+.++..... +.. ......++.+.++++.+++. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2356799999996 48888999999987542110 001 12233345688999999994 556654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++.|.|||++|||+. .+.++||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999975 5778999999999999999
Q ss_pred ecCHHHH
Q 005488 377 FGKASEA 383 (694)
Q Consensus 377 ~G~~~~~ 383 (694)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9987653
No 309
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.4e-40 Score=409.94 Aligned_cols=336 Identities=19% Similarity=0.181 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccccccccchhhHH
Q 005488 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (694)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (694)
++.++.-.+.++...|...+.+++|.++.+....+++.+...+......+.....+......... ..-+.-++.|+.+
T Consensus 469 ~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fg~~~ 546 (1495)
T PLN03232 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI--PVVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33445556677788889999999999999887776665433222222111110000000000000 0011113455555
Q ss_pred HhhhhhhhhhhhccccC----CCChhhh------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeE
Q 005488 92 SRASSASLGLSFSFTGF----TMPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDV 155 (694)
Q Consensus 92 ~~~~~~~~g~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nv 155 (694)
...+..+.|..+++..+ ..|...+ +..|.....+.+++... +.. ........++++|+
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-----~~~-~~~~~~~~I~~~~v 620 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-----QNP-PLQPGAPAISIKNG 620 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-----ccC-CcCCCCCcEEEEee
Confidence 55555566666655321 1121111 11111111111111000 000 00011235999999
Q ss_pred EEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEc
Q 005488 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235 (694)
Q Consensus 156 s~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~ 235 (694)
+|+|+. ..++++|+|+|++|++||.++|+||||||||||+++|.|.. ++ .+|.+. .+++.|+||+
T Consensus 621 sF~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~-~~G~i~--------~~~~~Iayv~ 685 (1495)
T PLN03232 621 YFSWDS-----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SH-AETSSV--------VIRGSVAYVP 685 (1495)
T ss_pred EEEcCC-----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cc-cCCCEE--------EecCcEEEEc
Confidence 999831 13467999999999999999999999999999999999854 33 466552 3567899999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
|++.+|+ .||+|||.|+.. .++++ .+++++.. .|+++.+|.||+++. .||||||||++|||
T Consensus 686 Q~p~Lf~-gTIreNI~fg~~------~~~e~----~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~LSGGQkQRIaLAR 753 (1495)
T PLN03232 686 QVSWIFN-ATVRENILFGSD------FESER----YWRAIDVTALQHDLDLLPGRDLTEIGERGV-NISGGQKQRVSMAR 753 (1495)
T ss_pred Ccccccc-ccHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhCCCCCCceecCCCc-ccCHHHHHHHHHHH
Confidence 9999996 599999999742 22222 22233222 457888999998754 69999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|++++|+|+|||||||+||+.++.++++. ++.+. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~--l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHF--LPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhh--HHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999999999988765 55443 58999999999863 67899999999999999999999874
No 310
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.5e-38 Score=317.09 Aligned_cols=194 Identities=28% Similarity=0.455 Sum_probs=152.8
Q ss_pred EEEEeEEEEEeeccccccc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
|+++||+++|.. +. .+++|+|+|++|++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~-~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-E-KLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCCCeEEEcC-------
Confidence 478999999821 11 136999999999999999999999999999999999954 3 4689999998
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGe 300 (694)
+|+|++|++.+++ .|++||+.+... ...+ ...+.++.+++. ...++.+. ..+..|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999985 699999987532 1111 112222222221 12233332 3457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
|||++|||+|+.+|++++|||||+|||+.++..+.+ .++++.++|+|||+++|++.. +.. +|++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 466676668999999999764 444 99999999985
No 311
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-39 Score=324.22 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=172.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hccCcEEEEccCCcCCCCCC
Q 005488 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--------~~~~~i~yV~Q~~~l~~~lT 245 (694)
=++++..+.-.++||-|+||||||||+|+|+|... +++|.|.+||+-+.+ ..+|+|||||||..|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 36788887767999999999999999999999654 458999999987632 24788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005488 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (694)
|+.||.|+.... .....+++++.+|++|..+. ++..|||||||||+|+|||+++|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986321 33456788899999988875 5678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||-.-..+++-.|.+|.++ +..|+.+||-+. |+.+++|+|++|++|++..+|+.+++.+
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 789999999965 6899999999999999999999999863
No 312
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-37 Score=306.44 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=199.9
Q ss_pred eEEEEeEEEEEeecccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
.|+++||+.++ .+ +.||++||++|++||+.+||||||||||||.++|+|+-....++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 68999999987 34 58999999999999999999999999999999999964333468999999999852
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGer 301 (694)
..|.-|...+|.|.=+|..|+.+.|..+...+....-...+..+++++.++.+++++ ..+..+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 456778999999999999999999998876533221113456778889999999976 5555443 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc--CEEEEEeCCeEEEecC
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~--D~i~vL~~G~iv~~G~ 379 (694)
||..|+..++.+|++.|||||-||||..+-+.|-+.++.+...|.++++|||.. ++.++. |++.+|.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999985 466665 9999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 005488 380 ASEAMAYFSSIGCSP 394 (694)
Q Consensus 380 ~~~~~~~f~~~G~~~ 394 (694)
+ ++..+++.-||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999999864
No 313
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=306.36 Aligned_cols=204 Identities=28% Similarity=0.494 Sum_probs=174.6
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~----~ 225 (694)
++++++.|.- .+.++|+|+||.+.+||..+|.||||||||||+|+++. +. ++++|++++.|++++ +
T Consensus 4 le~kq~~y~a--------~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 4 LELKQVGYLA--------GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred hHHHHHHhhc--------CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChH
Confidence 4555555532 56789999999999999999999999999999999996 44 356899999999986 3
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
.+|.+|+|+.|.+.||+. ||++|+.|....+..+ -..++..++++++++++..- +..+.+||||||||++
T Consensus 74 a~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriA 143 (223)
T COG4619 74 AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSIL----TKNITELSGGEKQRIA 143 (223)
T ss_pred HHHHHHHHHHcCcccccc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHH
Confidence 689999999999999986 9999999987765322 13456788999999976432 3456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|+|.|..-|+||+||||||+||+.+++.|-+.|.++. .+.+.++.+||++.. ..+.|||++-+..|++
T Consensus 144 liR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 144 LIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999999999999999999999986 568999999999764 5689999999999876
No 314
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=7e-38 Score=338.57 Aligned_cols=215 Identities=27% Similarity=0.404 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---- 224 (694)
.++++|+++.| +...+++|||++|++||+.||+|+||||||||+|+|.|. +.| ++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~P-~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQP-DSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-ccC-CcceEEECCEEeccCCH
Confidence 58999999998 467899999999999999999999999999999999994 444 5899999999874
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
+..+..||.|+|++.|++++||.|||..+...........++..++++++.+++||+-..|..| .+||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2467789999999999999999999999875322223567778889999999999987666655 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||+|||.+. ++.+.|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999986 6889999999999999876655
No 315
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-37 Score=311.51 Aligned_cols=192 Identities=21% Similarity=0.325 Sum_probs=160.2
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
|+++|++++| +++.+++ +|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~--------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNI--------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEE--------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhh
Confidence 7899999998 2344555 999999999999999999999999999999543 4689999999987543345
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++|||+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999987777899999998865321 0 234567788999997665543 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
|+.+|++|+|||||+|||+.++..+.+.|++..++|+|+|+++|++.. .+.+|-|.
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 999999999999999999999999999998777779999999999864 45567553
No 316
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1e-37 Score=316.94 Aligned_cols=200 Identities=26% Similarity=0.432 Sum_probs=158.6
Q ss_pred EEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----
Q 005488 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (694)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----- 225 (694)
.+.|+.|.|. +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccc
Confidence 4678888872 23579999999999999999999999999999999999653 458999999987632
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCC
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRG 295 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~ 295 (694)
..++.++|++|++.++ ..|++||+.+... ... ++..++++.++|.+. .++.. +..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCc
Confidence 2346799999999888 4799999987531 111 122344455555332 22222 234678
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~--~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
||||||||++|||+|+.+|++|||||||+|||+.++..+++ .++.+.+.|+|+|+++|++.. + ..+|++++|++|+
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 666666668999999999864 4 5799999999884
No 317
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-38 Score=306.77 Aligned_cols=167 Identities=37% Similarity=0.638 Sum_probs=147.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++|++++|.. .++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHH
Confidence 478999998821 12369999999999999999999999999999999999643 458999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..++.++|++|++.+++ .|++||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34677999999998886 5999887 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|++.. +.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 7999999999764 545 99999999985
No 318
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7e-38 Score=356.51 Aligned_cols=215 Identities=22% Similarity=0.304 Sum_probs=177.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++|++. .+|+|||++|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 267 ~~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~ 331 (510)
T PRK15439 267 PVLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALS 331 (510)
T ss_pred ceEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCC
Confidence 3688988872 15999999999999999999999999999999999643 458999999998742
Q ss_pred ---hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 005488 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (694)
..++.|+||+|++ .+++.+|+.||+.................+++++++++.+||+ +..++. ++.|||
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSg 406 (510)
T PRK15439 332 TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSG 406 (510)
T ss_pred HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCc
Confidence 1346799999984 4888899999996431111110011222345688999999996 556654 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++||+. .+.++||++++|++|++++.|
T Consensus 407 G~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~ 485 (510)
T PRK15439 407 GNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGAL 485 (510)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999999999888999999999975 577899999999999999999
Q ss_pred CHHHH
Q 005488 379 KASEA 383 (694)
Q Consensus 379 ~~~~~ 383 (694)
+++++
T Consensus 486 ~~~~~ 490 (510)
T PRK15439 486 TGAAI 490 (510)
T ss_pred ccccC
Confidence 87653
No 319
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-37 Score=302.63 Aligned_cols=157 Identities=31% Similarity=0.487 Sum_probs=141.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---- 225 (694)
|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRF--------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH
Confidence 4789999998 23479999999999999999999999999999999999643 468999999998752
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567899888 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999975 4667899999999999875
No 320
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4e-39 Score=404.86 Aligned_cols=206 Identities=24% Similarity=0.385 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc-cEEEECCEeCChhc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~-G~I~~~G~~~~~~~ 227 (694)
.++++|++|+|.. ..++++|+|+|++|++||+++|+||||||||||+++|.|.. + +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~-~~~GG~I~l--------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-P-PRSDASVVI--------- 677 (1622)
T ss_pred ceEEEeeEEEccC-----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-c-cCCCceEEE---------
Confidence 5999999999832 12467999999999999999999999999999999999954 3 457 89975
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGe 300 (694)
++.|+||+|++.+|+ .||+|||.|+.. .++ ++.+++++.. .|+++.+|.||+++ ..|||||
T Consensus 678 ~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQ 745 (1622)
T PLN03130 678 RGTVAYVPQVSWIFN-ATVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQ 745 (1622)
T ss_pred cCeEEEEcCccccCC-CCHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHH
Confidence 457999999999996 599999999742 122 2233333322 35778899999875 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||+||||++++|+|+|||||||+||+.++.++.+ .++.+. +|+|+|++||+++ ....||+|++|++|++++.|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999998865 566554 5899999999985 467899999999999999999
Q ss_pred HHHHHH
Q 005488 380 ASEAMA 385 (694)
Q Consensus 380 ~~~~~~ 385 (694)
++++++
T Consensus 823 ~~eL~~ 828 (1622)
T PLN03130 823 YEELSN 828 (1622)
T ss_pred HHHHHh
Confidence 999864
No 321
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.1e-37 Score=335.33 Aligned_cols=187 Identities=31% Similarity=0.521 Sum_probs=162.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHH
Q 005488 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (694)
Q Consensus 188 IvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~ 265 (694)
|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+|+++||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999643 458999999998753 24678999999999999999999999986432 23344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 005488 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (694)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~- 344 (694)
+.+++++++++.+||.+..++ .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 556678899999999876665 45689999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 345 g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|+|+|++||++. ++.++||+|++|++|+++..|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 5778999999999999999999998753
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.3e-37 Score=324.08 Aligned_cols=204 Identities=29% Similarity=0.439 Sum_probs=163.3
Q ss_pred CCeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 005488 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~ 225 (694)
.+..|+++|+++. .+++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-----
Confidence 3456999999974 2469999999999999999999999999999999999653 4589999998
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSG 298 (694)
.++|++|++.+++. ||+||+.++... .. .++.+.++.+++. ...++.++ ..+..|||
T Consensus 99 ----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (282)
T cd03291 99 ----RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSG 162 (282)
T ss_pred ----EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCH
Confidence 39999999998875 999999875311 11 1112223333332 22233332 23568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||+++|++.. + ..||++++|++|++++.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999865 5554 48999999999864 4 67999999999999999
Q ss_pred cCHHHHHH
Q 005488 378 GKASEAMA 385 (694)
Q Consensus 378 G~~~~~~~ 385 (694)
|+++++..
T Consensus 240 g~~~~~~~ 247 (282)
T cd03291 240 GTFSELQS 247 (282)
T ss_pred CCHHHHHh
Confidence 99988753
No 323
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=359.73 Aligned_cols=220 Identities=27% Similarity=0.470 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++|+++.|... .+.+++|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCH
Confidence 69999999998311 123579999999999999999999999999999999999653 468999999998752
Q ss_pred -h----ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 005488 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 -~----~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (694)
. .++.++|++|++.+|+.+|+.||+.+..... ....++.++++.++++.+||.+..|+. +..|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 1 1467999999999999999999999865322 223455667889999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
+||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999877999999999975 3467999999999999999999
Q ss_pred HHHH
Q 005488 381 SEAM 384 (694)
Q Consensus 381 ~~~~ 384 (694)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8765
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.9e-37 Score=301.07 Aligned_cols=163 Identities=29% Similarity=0.526 Sum_probs=143.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
|+++|++++|. .++++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------c
Confidence 47899999882 13569999999999999999999999999999999999643 45899999874 5
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
.++|++|++.++ .+||+||+.+. .+..||||||||++|||+
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 57999999752 125799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
|+.+|++|+|||||+|||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999999999999999999999999886 689999999975 35789999999875
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=353.12 Aligned_cols=211 Identities=26% Similarity=0.435 Sum_probs=174.0
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|. .
T Consensus 2 l~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-------~ 64 (530)
T PRK15064 2 LSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN-------E 64 (530)
T ss_pred EEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------C
Confidence 7899999998 34579999999999999999999999999999999999653 45899999873 3
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhc------------cCCCC-----------------CCHHHHHHHHHHHHHHcCC
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALL------------RLPNT-----------------LTKQQKEKRAIDVINELGL 280 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~------------~~~~~-----------------~~~~~~~~~v~~~l~~lgL 280 (694)
.|||++|++.+++.+||+||+.++... ..+.. ....+.++++.++++.+||
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 599999999999999999999875310 00000 0001224568889999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 005488 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (694)
Q Consensus 281 ~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (694)
++..+. ..+..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|++ .|.|||+++|++. .+.
T Consensus 145 ~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~ 216 (530)
T PRK15064 145 PEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLN 216 (530)
T ss_pred ChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHH
Confidence 753321 23468999999999999999999999999999999999999999999864 5899999999976 477
Q ss_pred hccCEEEEEeCCeE-EEecCHHHHHH
Q 005488 361 HKFDKLILLGKGSL-LYFGKASEAMA 385 (694)
Q Consensus 361 ~~~D~i~vL~~G~i-v~~G~~~~~~~ 385 (694)
+.||+|++|++|++ ++.|++++..+
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 88999999999999 58999887653
No 326
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-38 Score=372.36 Aligned_cols=338 Identities=15% Similarity=0.151 Sum_probs=219.9
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccc--ccccccc
Q 005488 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL--KLELDEV 85 (694)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 85 (694)
.++.++.+++.++..+..+|...+.++|++|+++..+.+++.++.........+..........-...... -..+.-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999887776655433221111111000000000 0001111
Q ss_pred chhhHHHh-h----hhhhhhhhhc-cccC-------CCC------------hhhhccCCCCCCCCCcccccccc----CC
Q 005488 86 SSGAALSR-A----SSASLGLSFS-FTGF-------TMP------------PDEIADSKPFSDDDIPEDIEAGT----RE 136 (694)
Q Consensus 86 ~~g~~~~~-~----~~~~~g~~~~-~~~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~----~~ 136 (694)
..|..... . |..+.|.+.. |..+ ..| .......|.++..+..+++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 12221111 1 2222232222 1110 111 11111122222222211111000 00
Q ss_pred CC-----------C----CCCCCCCCeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 005488 137 RP-----------K----FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (694)
Q Consensus 137 ~~-----------~----~~~~~~~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~ 201 (694)
.+ . ..........|+++||++.|+ +++++|+|+|+++++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 00 0 000011223699999999872 2347999999999999999999999999999999
Q ss_pred HHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 005488 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (694)
Q Consensus 202 ~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (694)
+|+|.. + +.+|+|.+++ +++++||+|++.+++. |++||+.++...... ......++++.++++.+++.
T Consensus 497 lL~Gl~-~-~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGELW-P-VYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCCC-C-CCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCH
Confidence 999954 3 4589998864 4679999999999976 999999986421100 00001234567888888887
Q ss_pred cccc------ccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 005488 282 RCQD------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (694)
Q Consensus 282 ~~~~------t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (694)
+..+ +..+ ....||||||||++|||||+++|+++||||||++||+.++..+.+.+++ .|+|+|+++|++
T Consensus 565 ~~~~~~~g~~~~~~--~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~ 639 (659)
T TIGR00954 565 HILEREGGWSAVQD--WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRK 639 (659)
T ss_pred HHHhhcCCcccccc--cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCch
Confidence 6443 3322 3468999999999999999999999999999999999999999998876 389999999998
Q ss_pred ChHHHhccCEEEEEeC
Q 005488 356 SSRLFHKFDKLILLGK 371 (694)
Q Consensus 356 ~~~i~~~~D~i~vL~~ 371 (694)
+. .+.||++++|+.
T Consensus 640 ~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SL--WKYHEYLLYMDG 653 (659)
T ss_pred HH--HHhCCEEEEEeC
Confidence 64 588999999963
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.3e-37 Score=350.68 Aligned_cols=211 Identities=27% Similarity=0.383 Sum_probs=173.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
.+|+++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC------
Confidence 3799999999981 14679999999999999999999999999999999999653 45899999752
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhc---------------cCCC-CCCH-----------------HHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPN-TLTK-----------------QQKEKRAIDV 274 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~---------------~~~~-~~~~-----------------~~~~~~v~~~ 274 (694)
..+|||+|++.+++.+||.||+.++... ..+. .... .+..+++.++
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 4699999999999999999999875320 0000 0000 0123567788
Q ss_pred HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 005488 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (694)
Q Consensus 275 l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~ 354 (694)
++.+||+. .+. .+.+|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 99999953 444 45689999999999999999999999999999999999999999999986 3499999999
Q ss_pred CChHHHhccCEEEEEeCCeEE-EecCHHHHH
Q 005488 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (694)
Q Consensus 355 ~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (694)
+. .+.+.||+|++|++|+++ +.|+.++..
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 75 467889999999999986 889887643
No 328
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.3e-37 Score=346.70 Aligned_cols=215 Identities=21% Similarity=0.373 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|.. .+..+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 469999999998 2456999999999999999999999999999999999953 22258999999987531
Q ss_pred ---hccCcEEEEccCCcCCC--CCCHHHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 005488 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~--~lTV~Enl~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (694)
..++.++|++|++.++. ..|+++++.++... ....... ...+++++++++.+||.+ ..++ .+..||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADA-----PFHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccC-----chhhCC
Confidence 24567999999976543 24777776544211 0101111 233457889999999976 5554 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHHHh-ccCEEEEEeCCeEE
Q 005488 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (694)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvi~~~H~~~~~i~~-~~D~i~vL~~G~iv 375 (694)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|. |||++||++.. +.+ .+|++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecCCceE
Confidence 9999999999999999999999999999999999999999999987764 69999999764 555 58999999999987
Q ss_pred Eec
Q 005488 376 YFG 378 (694)
Q Consensus 376 ~~G 378 (694)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-37 Score=346.92 Aligned_cols=215 Identities=20% Similarity=0.368 Sum_probs=175.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|+++|+++.+ +.+|+|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCC
Confidence 469999998752 359999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCC---cCCCCCCHHHHHHHHHh--c-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCC
Q 005488 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--L-RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (694)
..++.++|++|++ .+|+.+|+.+|..+... . ...........++.+.++++.+++. +..++ .+.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 47888888877433210 0 0000012233456778899999985 33444 4578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 577899999999999999
Q ss_pred EecCH
Q 005488 376 YFGKA 380 (694)
Q Consensus 376 ~~G~~ 380 (694)
..++.
T Consensus 471 ~~~~~ 475 (491)
T PRK10982 471 GIVDT 475 (491)
T ss_pred EEEcc
Confidence 87755
No 330
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=310.11 Aligned_cols=194 Identities=26% Similarity=0.448 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEeeccccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
.++++|+++.|..+....+. ...+++||||+|++||+++|||+||||||||-|+|.|. .+ +++|+|.++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EE-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cC-CCCceEEEcCcchhhcc
Confidence 58999999998654311111 24799999999999999999999999999999999974 44 45899999999864211
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
+++..+++.++++.+||+.. ..++++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHH
Confidence 34566789999999998642 22467899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
|||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.++++||++. +...+|||.+|..|+|++.|+.+++..
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999865 9999999999864 777899999999999999999999853
No 331
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-37 Score=306.51 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=182.9
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..|+++||+.+| .+|+||+|+|++|+|||-.+|+|||||||||||++++|.. ++.+|.+.+.|+...
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCc
Confidence 469999999988 5788999999999999999999999999999999999943 345899999999874
Q ss_pred --hhccCcEEEEccC--CcCCCCCCHHHHHHHHHh--ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 005488 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 225 --~~~~~~i~yV~Q~--~~l~~~lTV~Enl~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (694)
.++|++||||.-+ ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|... ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3679999999853 344556788888754332 111111234566778899999999998887654 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
||||||-|||||+.+|++||||||++|||...+..+++.|.+++.. +.++|+|||+.. ++-..++++++|++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999975 6888999999999999999
Q ss_pred ecC
Q 005488 377 FGK 379 (694)
Q Consensus 377 ~G~ 379 (694)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 884
No 332
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=347.04 Aligned_cols=204 Identities=23% Similarity=0.366 Sum_probs=172.0
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.
T Consensus 318 ~~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 369999999998 34569999999999999999999999999999999999543 45899999873
Q ss_pred cCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHH
Q 005488 228 KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 228 ~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqRv 304 (694)
+.+||++|++. +++.+||+||+.+.. .. . ..++++.++++.+|+. +..+. .+..||||||||+
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 447 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRM 447 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHH
Confidence 46999999964 566789999987521 11 1 1235678899999994 44454 4568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (694)
+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+.+.||++++|++|+++ +.|+++++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999999999999999999999999999999999886 359999999975 477789999999999998 88998876
Q ss_pred HH
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
++
T Consensus 524 ~~ 525 (530)
T PRK15064 524 LR 525 (530)
T ss_pred HH
Confidence 43
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.9e-36 Score=347.82 Aligned_cols=211 Identities=27% Similarity=0.378 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|+++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------C
Confidence 699999999982 14579999999999999999999999999999999999653 4589999975 2
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhc-c-----C------CCCCCHH---------------------HHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-R-----L------PNTLTKQ---------------------QKEKRAIDVI 275 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~-----~------~~~~~~~---------------------~~~~~v~~~l 275 (694)
..||||+|++.+++.+||+||+.++... + . ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 0 0 0000010 0123566677
Q ss_pred HHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 005488 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (694)
Q Consensus 276 ~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (694)
+.+|++. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 7788853 343 45689999999999999999999999999999999999999999999876 35999999997
Q ss_pred ChHHHhccCEEEEEeCCeEE-EecCHHHHHH
Q 005488 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (694)
Q Consensus 356 ~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (694)
. .+...||++++|++|+++ +.|+.++..+
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 5 467789999999999975 7898887554
No 334
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.8e-36 Score=305.74 Aligned_cols=196 Identities=20% Similarity=0.216 Sum_probs=159.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-ECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 005488 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (694)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (694)
.+|+||||+|++||+++|+||||||||||+|+|+|... +.+|+|. ++|..+ .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999543 4689997 777543 13356778899999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005488 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (694)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (694)
+.+...... ...++.. +.+.+.++|++..++. ++.||||||||++|||+|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222222 2333556777666654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhc
Q 005488 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 390 (694)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~ 390 (694)
++..+.+.|.+..+ ++|+|+++|++. .+.+.||++++|++|++++.|+.+++.++++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998866544 578999999986 466789999999999999999999998887653
No 335
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=317.77 Aligned_cols=227 Identities=26% Similarity=0.458 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cccEEEECCEeCC-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~---~~G~I~~~G~~~~- 224 (694)
.|+++|++..+... .+...++++|||+|++||.+||||+||||||-..+.+.|.+..+. .+|+|.|+|+++-
T Consensus 6 lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 58999999988532 356789999999999999999999999999999999998776532 4799999999873
Q ss_pred ---hhc---c-CcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 005488 225 ---KSL---K-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (694)
Q Consensus 225 ---~~~---~-~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (694)
+.+ | .+|+.+||+|. |.|-.|+..-|.-..++. ..+++++.++++.++++.+|+++-.... +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 122 2 47999999984 677778888777665543 4577888899999999999998755432 578999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
|||||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..+++||||++ -+-+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999754 999999999986 46778999999999999
Q ss_pred EEecCHHHHH
Q 005488 375 LYFGKASEAM 384 (694)
Q Consensus 375 v~~G~~~~~~ 384 (694)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999988875
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.6e-36 Score=310.01 Aligned_cols=190 Identities=25% Similarity=0.305 Sum_probs=154.7
Q ss_pred ceeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCC
Q 005488 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lT 245 (694)
..|+|+++++. +||+++|+||||||||||+++|+|.+. +.+|+|.++|. .|+|++|+...+..+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 36777777776 799999999999999999999999543 45899999985 5899999987767789
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005488 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (694)
|+||+.+...... . ....+.++++.++|.+..++. +..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 1 122356788899998766543 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE--EecCHHHH
Q 005488 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASEA 383 (694)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv--~~G~~~~~ 383 (694)
||+.++..+.+.|++++++ |+|||+++|++. .+..+||++++|+++..+ ..+++.++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999999764 899999999975 466789999999764333 44555443
No 337
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.6e-37 Score=367.39 Aligned_cols=336 Identities=23% Similarity=0.307 Sum_probs=231.5
Q ss_pred HHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccc-cccccccccc--hhhHHH---hhh--
Q 005488 24 AAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSA-QLKLELDEVS--SGAALS---RAS-- 95 (694)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~g~~~~---~~~-- 95 (694)
--.|+.....|||||+.+..-.+++..++..-.+.-+ +...++-| ..++|++... ...++. ..+
T Consensus 999 h~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f--------~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 999 HFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFF--------LSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred hHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4456677779999999999999999888864444422 11222233 3466665421 111111 111
Q ss_pred --hhhhhhhhcccc--------CCCChhhhccC-----CCCCCCCCccccccccCCCC-CCCCCCCCCeeEEEEeEEEEE
Q 005488 96 --SASLGLSFSFTG--------FTMPPDEIADS-----KPFSDDDIPEDIEAGTRERP-KFQTEPTLPIYLKFTDVTYKV 159 (694)
Q Consensus 96 --~~~~g~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~nvs~~~ 159 (694)
....|+..+++. ......++.+. |..++.+++++ .....+.. .+..-| ..+.|+|+|++.+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP-~~G~I~f~~~~~RY 1148 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWP-SKGEIEFEDLSLRY 1148 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCC-CCCeEEEEEeEEEe
Confidence 123444444432 11111222211 33333343333 10000000 111222 23579999999999
Q ss_pred eecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEc
Q 005488 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (694)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~~i~yV~ 235 (694)
. .+-..||||||++|+|||.++|||..|||||||+++|- |+.++ .+|+|.+||.++.+ ++|++++.+|
T Consensus 1149 r------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIP 1220 (1381)
T KOG0054|consen 1149 R------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIP 1220 (1381)
T ss_pred C------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccccHHHHHhcCeeeC
Confidence 3 23457999999999999999999999999999999999 56655 58999999999974 7899999999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 005488 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (694)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~ 315 (694)
|||.+|.+ |||.||.=.... .++.+.++..+...++.++ .++...|+.|.+. ..++|-||||.+++||||+++.+
T Consensus 1221 QdPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~eg-G~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1221 QDPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLDSEVSEG-GENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CCCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCCceecCC-CccCChHHHHHHHHHHHHhccCC
Confidence 99999975 999999622110 0111122222233344444 3455677777643 35799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
||+|||+|++.|+++-..|.+.||+-= +++|||.|.|++++ + -.+|||+||++|+++++|+|.++++
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999999999853 48999999999986 4 4589999999999999999999974
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-35 Score=340.13 Aligned_cols=205 Identities=22% Similarity=0.372 Sum_probs=168.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++||++.| +++.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 469999999998 34579999999999999999999999999999999999653 45899999542
Q ss_pred cCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 005488 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..|||++|++ .+++.+||+||+.+...... ... ....+.++++.+|+.+ ..+. .+.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 78888999999998643211 111 1223456899999963 3444 35689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEE-EecCHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~~ 383 (694)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||+|++|++ |++. +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999872 4 8999999975 47788999999986 7876 56665543
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-36 Score=288.02 Aligned_cols=220 Identities=27% Similarity=0.441 Sum_probs=189.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-EeCCh-
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G-~~~~~- 225 (694)
..|+++||+.++ +...+|+|+||++.|||+-+|+|||||||||++++|+|.. ++..|+|+++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999988 4667999999999999999999999999999999999954 35589999999 77753
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
..|..||--||.|..|+.+||+|||..+.....+- .-...+.+.+++++|...||.+.++..- ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 23667999999999999999999999876432110 0112345668999999999998887653 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
|-||||++.|++-|+.+|++|+||||++|+-.+...+.-++|+.++. +++|+++-||.. -+-+++|+|-+|++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999999999999999999986 789999999976 4778999999999999999
Q ss_pred ecCHHHHH
Q 005488 377 FGKASEAM 384 (694)
Q Consensus 377 ~G~~~~~~ 384 (694)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
No 340
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-36 Score=301.68 Aligned_cols=208 Identities=27% Similarity=0.419 Sum_probs=180.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEc-cCCcCCCCCC
Q 005488 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPHLT 245 (694)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~lT 245 (694)
..+.+||||+|++|++++++|||||||||+||+|+|.+. +.+|.|.++|.+.- +++-+.+++|+ |.-.+...+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999765 45899999998653 24456687776 4456666777
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005488 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (694)
+.|.+....... +++.++..++.+.+.+.++|+...+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888887654433 467788889999999999998766654 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHH
Q 005488 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (694)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (694)
||..++..|.+.|++..+ .+.||+.+||+.+ ++.++||||++|+.|+++|.|+.+++...|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999975 4899999999987 5889999999999999999999999987764
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.3e-35 Score=336.68 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=167.6
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc------
Confidence 469999999998 34579999999999999999999999999999999999653 45899999542
Q ss_pred cCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 005488 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..|||++|++ .+++.+||.||+.++.... ..... +.++.++++.+|+.+ ..+. .+..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 4788899999999864321 11111 223557899999963 3444 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEE-EecCHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 382 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~ 382 (694)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++. .+.+.||++++|++ |+++ +.|+.++
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999872 4 8999999975 46788999999986 5876 5566544
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.7e-35 Score=336.27 Aligned_cols=197 Identities=29% Similarity=0.370 Sum_probs=168.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..++++|++++| ++ ..|+++|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++
T Consensus 339 ~~l~~~~ls~~~--------~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKL--------GD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEE--------CC-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe--------
Confidence 469999999988 22 25999999999999999999999999999999999653 458999986
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
..++|++|+..+++.+||+||+.+.... ... ...+.++++.++|.+..++ .+..|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~-----~~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDK-----NVKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhC-----CcccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 2246789999999876665 4568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++||+. .+..+||++++|+ |++...|+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999864 899999999975 4677899999996 58877776
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.7e-35 Score=306.33 Aligned_cols=199 Identities=26% Similarity=0.368 Sum_probs=162.7
Q ss_pred eEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-----------ECCEe
Q 005488 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (694)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-----------~~G~~ 222 (694)
||+++|. ..+.+|+|+| .+++||+++|+||||||||||+|+|+|.. . +.+|+|. ++|++
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~-p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL-K-PNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-C-CCCceEeeccccchhhhhccCch
Confidence 5777772 2236999999 59999999999999999999999999964 3 4589996 88887
Q ss_pred CChh---cc---CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 005488 223 YSKS---LK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (694)
Q Consensus 223 ~~~~---~~---~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (694)
+.+. .+ ..++|++|+..+++. ++.+|+.+.. .....++.+.++++.+||.+..+. .+..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDR-----NIDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcC-----ChhhC
Confidence 7431 11 247999999888874 8888887642 122334667899999999876554 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 005488 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (694)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (694)
|||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++| +|++.+
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l-~~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL-YGEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-CCCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 466689999999 466665
Q ss_pred ec
Q 005488 377 FG 378 (694)
Q Consensus 377 ~G 378 (694)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 44
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-35 Score=338.31 Aligned_cols=203 Identities=29% Similarity=0.441 Sum_probs=169.5
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++||++.| +++.+|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC------
Confidence 369999999998 34679999999999999999999999999999999999653 45899999742
Q ss_pred cCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHH
Q 005488 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 228 ~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv 304 (694)
..+||++|+. .+.+..|+.+++... . .....+++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~-----~----~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL-----A----PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh-----C----chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 355667888876421 0 1123456788999999963 45543 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (694)
+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+.+.||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999975 477889999999999997 88998876
Q ss_pred HH
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
..
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.2e-35 Score=366.51 Aligned_cols=209 Identities=22% Similarity=0.400 Sum_probs=172.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.++++|++|+|. ..++++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--------
Confidence 699999999983 124579999999999999999999999999999999999543 4589999987
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH---HHHHcC-CCccccccccCccCCCCCHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
.|+||+|++.+++ .||+|||.|+.. ..++.. +++.+ +.+.++ ++++.+|.+|+. ...||||||||+
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999885 699999998632 122222 22222 123332 356678888865 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l--~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
+|||||+.+|+|++||||||+||+.++..+.+.+.+. ..+|+|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2348999999999864 46699999999999999999999
Q ss_pred HHH
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.6e-34 Score=275.22 Aligned_cols=144 Identities=33% Similarity=0.561 Sum_probs=130.3
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~ 229 (694)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+ +
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEE--------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------E
Confidence 4789999988 23469999999999999999999999999999999999543 46899999985 4
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 005488 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (694)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (694)
.++|++| ||+||+||++|||+
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6899998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+.+|++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999886 479999999975 4667899999999986
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-35 Score=285.36 Aligned_cols=218 Identities=27% Similarity=0.413 Sum_probs=173.7
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh---
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--- 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~--- 226 (694)
++++|++..+.. + ...++++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.+||.++++.
T Consensus 2 i~~~~~~~~f~~-g--~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~ 76 (263)
T COG1101 2 ISLSNATKTFFK-G--TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVA 76 (263)
T ss_pred cccccceeeecC-C--ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHH
Confidence 345555554421 1 2356789999999999999999999999999999999999764 5699999999999742
Q ss_pred -ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCCCCCH
Q 005488 227 -LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (694)
Q Consensus 227 -~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (694)
....++-|+|||. .++.|||+||+..+...-..+.+.. ..+.+...+-+..+ ||++..++.+| -|||
T Consensus 77 ~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSG 151 (263)
T COG1101 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSG 151 (263)
T ss_pred HHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccc
Confidence 2245788999984 7999999999999764321222332 22333344445544 56777777665 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
||||-++++.|-++.|+||+|||-|++|||.++..+++.-.++.++ +.|.+++||... +...+-+|.++|++|+|+..
T Consensus 152 GQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999999999999998654 779999999976 46799999999999999876
Q ss_pred c
Q 005488 378 G 378 (694)
Q Consensus 378 G 378 (694)
-
T Consensus 231 v 231 (263)
T COG1101 231 V 231 (263)
T ss_pred c
Confidence 4
No 348
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=269.71 Aligned_cols=191 Identities=31% Similarity=0.501 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC--h
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS--K 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~~~G~~~~--~ 225 (694)
++.++||+.+. ++.-.|-|+|++|.+||++-||||||||||||+..+.|.+... ..+|++++|+++++ .
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 47889999754 4567999999999999999999999999999999999976422 36899999999986 3
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
..+|++|+.+||+.+||+++|.+||.|+ +|.++.-+.++..++..+++.||....+. .+..||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 5688999999999999999999999997 45566666778889999999999877664 46789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCC
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPS 356 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~ 356 (694)
+-|+|+..|+.++||||+|.||..-+.++.+..-.-. ..|..+|.+|||..
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999999999999999999999988876544 45999999999964
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4e-34 Score=333.45 Aligned_cols=205 Identities=26% Similarity=0.453 Sum_probs=168.7
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc----
Confidence 469999999998 34579999999999999999999999999999999999653 45899998 4332
Q ss_pred cCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 005488 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
.|||++|+. .+++.+||.||+.++.... ... ....++.++++.+++. +..++. +..|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998754211 011 1234577889999985 345543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-CCeEE-EecCHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLL-YFGKASEA 383 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-~G~iv-~~G~~~~~ 383 (694)
||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++|||.. .+...||++++|+ +|++. |.|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999965 4678899999998 79975 45666554
No 350
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-33 Score=282.55 Aligned_cols=223 Identities=22% Similarity=0.311 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeecc----------------cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 005488 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~ 212 (694)
.|+++||++.|.... ........+|+||||++++||.++|+|+||||||||||+|+|.+ + |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~-Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-K-PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-C-CC
Confidence 578889988876431 11224467999999999999999999999999999999999954 3 56
Q ss_pred ccEEEECCEeCChhccCcEEEEcc-CCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 005488 213 GGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (694)
Q Consensus 213 ~G~I~~~G~~~~~~~~~~i~yV~Q-~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (694)
+|+|.++|+-. ++.. .--+-|.+|.+||+.+-..+. .+++++.+++++++++.-+|.+..|..|
T Consensus 81 ~G~v~v~G~v~---------~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVA---------PLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEe---------hhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 89999999742 2221 123456799999999877553 4678899999999999989998888754
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
+.+|.||+-|+++|.+...+|+|||+||-.+--|+.=+++-.+.++++.++++|||+++|++. .+.++||++++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 789999999999999999999999999999999999999999999999888899999999976 58899999999999
Q ss_pred CeEEEecCHHHHHHHHHhcC
Q 005488 372 GSLLYFGKASEAMAYFSSIG 391 (694)
Q Consensus 372 G~iv~~G~~~~~~~~f~~~G 391 (694)
|++.+.|++++++++|+...
T Consensus 223 G~i~~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEEDL 242 (249)
T ss_pred CEEEEcCCHHHHHHHHHHhh
Confidence 99999999999999987643
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.4e-34 Score=331.92 Aligned_cols=207 Identities=20% Similarity=0.362 Sum_probs=166.2
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+++||++.|. +.+.+|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc------
Confidence 4699999999982 23469999999999999999999999999999999999653 45899998752
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
..|||++|++ ++.+++.+|..+......+ .. .++++.++++.+|+.+ ..+. .+..|||||||||+|
T Consensus 572 -~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 572 -VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred -eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 4699999986 2345676665432211111 11 1345778999999963 3443 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHHHH
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (694)
||+|+.+|++|||||||+|||+.+...+.+.|++. .| |||++|||+. .+...||++++|++|+++ +.|+.++...
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999998888765 34 9999999975 467789999999999998 7888877554
Q ss_pred H
Q 005488 386 Y 386 (694)
Q Consensus 386 ~ 386 (694)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.9e-34 Score=280.48 Aligned_cols=158 Identities=26% Similarity=0.389 Sum_probs=132.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHH
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~ 247 (694)
..+++|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|.. ....++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~-~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFL-PKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcc-cccccccEEEEhH-----------
Confidence 45679999999999999999999999999999999963 27999998873 2223445888887
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 005488 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTS 324 (694)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~~--P~iLlLDEPTs 324 (694)
.++++.++|... .+. .++.||||||||++|||+|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 235667787642 333 4578999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
+||+.++..+.+.|+++++.|+|||+++|++.. .+.||++++|++|+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~--~~~~d~i~~l~~g~~ 166 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV--LSSADWIIDFGPGSG 166 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEECCCCC
Confidence 999999999999999998779999999999753 468999999966543
No 353
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-34 Score=331.32 Aligned_cols=208 Identities=27% Similarity=0.429 Sum_probs=162.9
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
+|+++||+++| +++.+|+||||+|++|++++|+||||||||||||+|+|.+. +++|+|.++|..
T Consensus 1 ~i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~------ 64 (638)
T PRK10636 1 MIVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW------ 64 (638)
T ss_pred CEEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC------
Confidence 37899999998 45679999999999999999999999999999999999543 458999998852
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhc-------------cCC-----------CCCCHHHHHHHHHHHHHHcCCC-cc
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-------------RLP-----------NTLTKQQKEKRAIDVINELGLE-RC 283 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-------------~~~-----------~~~~~~~~~~~v~~~l~~lgL~-~~ 283 (694)
.++|++|++..+. .|+.+++.-.... ... ......+.+.++.++++.+|+. +.
T Consensus 65 -~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~ 142 (638)
T PRK10636 65 -QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142 (638)
T ss_pred -EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchh
Confidence 3889998754432 4665554311000 000 0000012345788899999996 44
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc
Q 005488 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (694)
Q Consensus 284 ~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~ 363 (694)
.+.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||.. .+.+.|
T Consensus 143 ~~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~ 213 (638)
T PRK10636 143 LERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIV 213 (638)
T ss_pred hcCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhc
Confidence 5544 4689999999999999999999999999999999999999999998875 569999999975 467889
Q ss_pred CEEEEEeCCeEE-EecCHHHH
Q 005488 364 DKLILLGKGSLL-YFGKASEA 383 (694)
Q Consensus 364 D~i~vL~~G~iv-~~G~~~~~ 383 (694)
|+|++|++|+++ |.|+.++.
T Consensus 214 d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 214 DKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred CEEEEEeCCEEEEecCCHHHH
Confidence 999999999986 67876544
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.1e-34 Score=280.62 Aligned_cols=152 Identities=27% Similarity=0.425 Sum_probs=132.4
Q ss_pred EeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (694)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~ 232 (694)
.||+++| +++.+++++ +++++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EE
Confidence 5788887 356789985 8999999999999999999999999999653 458999999864 78
Q ss_pred EEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 005488 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (694)
Q Consensus 233 yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~ 312 (694)
|++|+.. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhccCEEEEEeCCeEEEe--cCH
Q 005488 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKA 380 (694)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~--G~~ 380 (694)
+|++++|||||++||+.++..+.+.++++++++ +|||+++|++. .+.+.||++++|+++-.++. |.|
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~ 158 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQP 158 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCC
Confidence 999999999999999999999999999997765 89999999975 46678999999998766654 544
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.4e-33 Score=353.89 Aligned_cols=197 Identities=27% Similarity=0.438 Sum_probs=159.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 005488 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (694)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (694)
+++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999653 4589999998 39999999999975 99999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005488 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (694)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (694)
|.|+.... ........+....++.++.+ ++..+|.+|+. ...|||||||||+|||||+.+|+|+||||||+|||+.
T Consensus 507 I~~g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 507 IIFGLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHhccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99874211 00000000011122333333 45567788765 5679999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 330 TALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 330 ~~~~i~~~-L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
++..+.+. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 583 ~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 583 TEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999984 66665 48999999999864 45699999999999999999998863
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.5e-34 Score=270.69 Aligned_cols=227 Identities=22% Similarity=0.450 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeecc-cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
-++++|+++++..+. ...+....+.+.|||+++.|+.+||+|.||||||||.|+|+|... +++|+|++||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccc
Confidence 378888887764321 112344568999999999999999999999999999999999653 569999999999851
Q ss_pred -hc-cCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccCCCCCHHH
Q 005488 226 -SL-KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 226 -~~-~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~vg~~~~~~LSGGe 300 (694)
.. .+.|-.+||||. +.|.+.+.+-|....+ +..++..+++.+++.+.++.+|| ++.++- ++.-||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~--l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR--LNTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhh--hcccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCchh
Confidence 23 356999999984 6777777777776544 44567788899999999999998 555543 567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
||||++||||+.+|+|+|.||...+||...+.+++++..+|.++ |..-|.++.++. .+...+|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999754 999999999876 4778899999999999999999
Q ss_pred HHHHHH
Q 005488 380 ASEAMA 385 (694)
Q Consensus 380 ~~~~~~ 385 (694)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 998753
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3e-33 Score=326.10 Aligned_cols=206 Identities=25% Similarity=0.397 Sum_probs=161.5
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|... +.+|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC------
Confidence 58999999998 34679999999999999999999999999999999999543 458999998732
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHH------------------------------hcc--CCCCCCHHHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAA------------------------------LLR--LPNTLTKQQKEKRAIDVIN 276 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~------------------------------~~~--~~~~~~~~~~~~~v~~~l~ 276 (694)
.++|++|++......+|.+++..+. ... .. .........++.++++
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 144 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLA 144 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHH
Confidence 2678887654333346666543110 000 00 0000112456788999
Q ss_pred HcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 005488 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 277 ~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
.+|+.. + ..+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||+.
T Consensus 145 ~lgl~~--~-----~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~ 214 (635)
T PRK11147 145 QLGLDP--D-----AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS 214 (635)
T ss_pred hCCCCC--C-----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH
Confidence 999962 3 345689999999999999999999999999999999999999999999987 359999999975
Q ss_pred hHHHhccCEEEEEeCCeEE-EecCHHHH
Q 005488 357 SRLFHKFDKLILLGKGSLL-YFGKASEA 383 (694)
Q Consensus 357 ~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (694)
.+.+.||+|++|++|+++ +.|+.++.
T Consensus 215 -~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 215 -FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred -HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 467889999999999997 56877654
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-33 Score=268.27 Aligned_cols=152 Identities=37% Similarity=0.729 Sum_probs=135.7
Q ss_pred EEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~ 227 (694)
++|++++| .++.+|+++|+++++|++++|+|+||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 2 ~~~~~~~~--------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEe--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 67899987 23469999999999999999999999999999999999653 458999999987643 34
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (694)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567899998 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
++|+.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|++. .+...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998876899999999975 4666789999999875
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=336.44 Aligned_cols=224 Identities=25% Similarity=0.436 Sum_probs=201.2
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..+..+|+++.|.. .++ +++++|+.|++||+.+++|+|||||||++|+|.|.. ++++|+++++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 35889999998831 122 999999999999999999999999999999999954 3568999999999853
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 005488 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (694)
..++.+||+||+|.+++.+|.+|++.+.++++ .++..+.++.++..++.+||.+..++.+ +.+|||+|+
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 26788999999999999999999999999887 4566677778999999999999998865 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
|+++|.||+.+|++++|||||+|+||.+++.+.+.++++.++|+.||.|||-. ++...+|||+.+|.+|++...|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH
Confidence 99999999999999999999999999999999999999998888999999996 46889999999999999999999999
Q ss_pred HHHHHHh
Q 005488 383 AMAYFSS 389 (694)
Q Consensus 383 ~~~~f~~ 389 (694)
+..+|.+
T Consensus 785 LKsrfG~ 791 (885)
T KOG0059|consen 785 LKSRYGS 791 (885)
T ss_pred HHhhcCC
Confidence 9987753
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.9e-33 Score=333.84 Aligned_cols=210 Identities=23% Similarity=0.403 Sum_probs=175.9
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..++++|.++++.. ....+.|+|||++|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999742 234459999999999999999999999999999999999764 56899999986
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH---HHc-CCCccccccccCccCCCCCHHHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l---~~l-gL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
++||+|++.+++ .||||||.|+... ++++.+++-+.. +++ -|+++-.|.||++++ .||||||||
T Consensus 584 ---iaYv~Q~pWI~n-gTvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQKqR 651 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQN-GTVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQKQR 651 (1381)
T ss_pred ---EEEeccccHhhC-CcHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhHHHH
Confidence 999999999996 5999999998532 223333333221 222 246677899998776 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
+++|||+.+|++|++||.|.|++|++....|.+..-...-++||+|.+|||.. ....||.|++|++|+|.+.|+.+|+
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCHHHH
Confidence 99999999999999999999999999999988766544445899999999864 5788999999999999999999999
Q ss_pred H
Q 005488 384 M 384 (694)
Q Consensus 384 ~ 384 (694)
+
T Consensus 730 ~ 730 (1381)
T KOG0054|consen 730 L 730 (1381)
T ss_pred H
Confidence 8
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.9e-33 Score=317.73 Aligned_cols=188 Identities=28% Similarity=0.400 Sum_probs=155.0
Q ss_pred EEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-----------ECCEeC
Q 005488 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHPY 223 (694)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-----------~~G~~~ 223 (694)
++++|. ++..+|++++ .+++||+++|+||||||||||+|+|+|.+. +..|+|. ++|+++
T Consensus 79 ~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 79 PVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred ceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHH
Confidence 667771 2346999999 999999999999999999999999999653 4589997 999887
Q ss_pred Chh---c---cCcEEEEccC----CcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 005488 224 SKS---L---KSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (694)
Q Consensus 224 ~~~---~---~~~i~yV~Q~----~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (694)
... + +.++++.+|. +.++. .||+|++.+. +..++++++++.+||.+..|+. +
T Consensus 149 ~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~-----~ 210 (590)
T PRK13409 149 QNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRD-----I 210 (590)
T ss_pred HHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----h
Confidence 431 1 2335665654 44443 3999998641 1235688899999998776654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+...+|+|++|+++
T Consensus 211 ~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999988 999999999976 477889999999863
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.8e-32 Score=342.65 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=155.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (694)
++++|+|+|++|++|++++|+|||||||||||++|+|.+. +.+|+|.++ +.||||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4569999999999999999999999999999999999653 458999863 46999999999885 69999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005488 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (694)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (694)
||.|+.... .+...+..+...+++.++.+ ++..++.+|.. ...|||||||||+|||||+.+|+|+||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000001111233444444 33446666654 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 005488 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 329 ~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (694)
.++..+++.+.....+|+|+|++||++.. ...+|+|++|++|++++.|+++++.+
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999887543222358999999999753 47799999999999999999998753
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.3e-32 Score=259.04 Aligned_cols=214 Identities=29% Similarity=0.454 Sum_probs=170.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe---CC-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~---~~- 224 (694)
-++++++++.| +...--+||||++.|||+++|+|+|||||||||++|++++. +..|+|.|.-.+ ..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 58999999988 34457899999999999999999999999999999999885 568999996532 21
Q ss_pred ----h-----hccCcEEEEccCCc--CCC----CCCHHHHHHH-HHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005488 225 ----K-----SLKSKIGFVTQDDV--LFP----HLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (694)
Q Consensus 225 ----~-----~~~~~i~yV~Q~~~--l~~----~lTV~Enl~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (694)
+ -+|..-|+|.|+|. +-. .-.|.|-+.- +++ .....++.+.++++++.++..+ +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c
Confidence 1 13456799999974 222 2234444331 111 1234566778999999886422 2
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEE
Q 005488 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
+..++.+|||++||+.|||.|++.|+++|+||||.|||..-+..++++++.+..+ |..++++|||+.- +--++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 3457899999999999999999999999999999999999999999999999765 8999999999763 344689999
Q ss_pred EEeCCeEEEecCHHHHH
Q 005488 368 LLGKGSLLYFGKASEAM 384 (694)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (694)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999888765
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=301.48 Aligned_cols=207 Identities=29% Similarity=0.466 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|+++|+++.| +++++|+|+|+++.+|+.++|||+||||||||||+|+|... +.+|+|...+.
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 68999999998 57889999999999999999999999999999999999653 45899987542
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCC
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR-------------LPNT--------------LTKQQKEKRAIDVINELGLE 281 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~ 281 (694)
-+++|++|++.+.+..||.+.+.-+.... ++.. ...-..+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 25999999999999899999887654210 0000 00001135667788888887
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh
Q 005488 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (694)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~ 361 (694)
+. ++. +.+||||||.||+||++|+.+|++|+|||||+.||..+..-+-+.|++. .| |+|+|||| ..-+-+
T Consensus 146 ~~-~~~-----~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRP-----VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 65 544 4589999999999999999999999999999999999999999888864 47 99999999 555778
Q ss_pred ccCEEEEEeCCeE-EEecCHHH
Q 005488 362 KFDKLILLGKGSL-LYFGKASE 382 (694)
Q Consensus 362 ~~D~i~vL~~G~i-v~~G~~~~ 382 (694)
.|++|+-++.|++ .|.|.-+.
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HhhheEEecCCceeEecCCHHH
Confidence 8999999999976 56666544
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=9.5e-32 Score=315.05 Aligned_cols=215 Identities=23% Similarity=0.302 Sum_probs=157.7
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeC--
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-- 223 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~~~G~~~-- 223 (694)
...|+++|++++| +++++|+|+||+|++|+.++|+|||||||||||++|+|+... .+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3479999999998 345699999999999999999999999999999999986421 23468887654431
Q ss_pred ---Ch-------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHH-------------------HHH
Q 005488 224 ---SK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ-------------------QKE 268 (694)
Q Consensus 224 ---~~-------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~-------------------~~~ 268 (694)
+. .+++.++|++|++.+... ++.++...... ...+.+ ..+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 10 012336677776543221 22222111000 000111 234
Q ss_pred HHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Q 005488 269 KRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347 (694)
Q Consensus 269 ~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~T 347 (694)
+++.+++..+|+. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566777888885 23343 34689999999999999999999999999999999999999999999886 679
Q ss_pred EEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHH
Q 005488 348 VVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (694)
Q Consensus 348 vi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (694)
||+++|+.. .+...||+|++|++|+++ |.|+.++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999964 467789999999999996 77876654
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=256.75 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=161.4
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~---~ 226 (694)
++.+|++.. ++++.++.++||++.+||++-|.|||||||||||++|+|.+. +.+|+|.++|.+++. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 556677653 367789999999999999999999999999999999999664 458999999998864 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (694)
+++.+-|+-.++-+=+.+||.|||.|....... ...+.+.+.++.+||....|..+ ..||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 456778888888888899999999998765321 12356788999999998888765 5899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 005488 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (694)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (694)
||-++..+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999998877788899999999875
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.7e-30 Score=262.55 Aligned_cols=191 Identities=23% Similarity=0.371 Sum_probs=135.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCcccEEEEC------------CEeCCh--hcc-CcE
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKI 231 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl-~~L~G~l~~~~~~G~I~~~------------G~~~~~--~~~-~~i 231 (694)
.+.++|+||||+|++||+++|+||||||||||+ ..+.. .|++.+. .....+ ..+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 456799999999999999999999999999996 44431 1222110 000000 111 223
Q ss_pred EEEccCCc--CCCCCCHH---HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 005488 232 GFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 232 ~yV~Q~~~--l~~~lTV~---Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
++..|++. +.+..+|. +...+...+. ......++ .+.++.++|.+ ..+ ..+..||||||||++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLS-----RSAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCccccc-----CccCcCCHHHHHHHH
Confidence 44444432 23444544 3222221111 11112223 56789999975 244 346789999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEe
Q 005488 306 IGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYF 377 (694)
Q Consensus 306 IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~ 377 (694)
|||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|+++|++.. .+.||++++| ++|+|+++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~--~~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT--IRAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH--HHhCCEEEEeCCCccccCCEEEec
Confidence 999999998 5999999999999999999999999998789999999999753 4789999999 99999998
Q ss_pred c
Q 005488 378 G 378 (694)
Q Consensus 378 G 378 (694)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=2.1e-30 Score=243.46 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=118.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCcCCCCCCHHH
Q 005488 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (694)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~E 248 (694)
|+|||++|++|++++|+|+||||||||+++|+|... +.+|+|.+||+++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999543 358999999999864 45788999999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005488 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (694)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTs 324 (694)
| ..+++++++++.+++.+..++.++.. ...||||||||++||+||+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 23456888999999988777777544 37899999999999999999999999999996
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.4e-29 Score=263.30 Aligned_cols=196 Identities=26% Similarity=0.406 Sum_probs=154.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCC----C----------CcccEEEECCEeCChhc--
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSL-- 227 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-----G~l~~----~----------~~~G~I~~~G~~~~~~~-- 227 (694)
...-|+|||.+|+.|++++|.|+||||||||++.+. ..+.. + ...--|.+|..|+....
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 345799999999999999999999999999998552 11110 0 01124777877764211
Q ss_pred ------------cC----------------cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC
Q 005488 228 ------------KS----------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279 (694)
Q Consensus 228 ------------~~----------------~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 279 (694)
|+ .+.|..++...+..+||.|++.|..... ..+++.++++.+|
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vg 157 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVG 157 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcC
Confidence 11 2556666666667899999999875431 1245678899999
Q ss_pred CCc-cccccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 005488 280 LER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (694)
Q Consensus 280 L~~-~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (694)
|.+ ..+ +.+..||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++
T Consensus 158 L~~l~l~-----~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 158 LGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred Cchhhhc-----CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 975 233 34568999999999999999996 799999999999999999999999999988899999999998
Q ss_pred ChHHHhccCEEEEE------eCCeEEEecCH
Q 005488 356 SSRLFHKFDKLILL------GKGSLLYFGKA 380 (694)
Q Consensus 356 ~~~i~~~~D~i~vL------~~G~iv~~G~~ 380 (694)
.. .+.+|+++.| ++|++++.|++
T Consensus 233 ~~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DV--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 53 4679999999 89999999974
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.4e-30 Score=240.93 Aligned_cols=213 Identities=26% Similarity=0.396 Sum_probs=171.4
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe--CC-
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~--~~- 224 (694)
..|..+||++++..+. +.+-.-++|+|+||+++.||++++=||||+||||||++|-|.. . +++|+|++.-.. ++
T Consensus 3 ~~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~-~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-L-PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-C-CCCceEEEEeCcchhhh
Confidence 3588999988875431 1223457999999999999999999999999999999999853 3 458999986532 11
Q ss_pred ------h--h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 005488 225 ------K--S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (694)
Q Consensus 225 ------~--~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (694)
+ . .++.||||.|--...|..+..|-++-.+.. ..++.+....++.+++.++++++..-.+ .+..
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1 1 346699999987778877777766654432 3467777888899999999998755433 3578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
+||||+|||.|||.++.|-+||+|||||+.||..++.-++++|++-+..|..+|=+-||- +.-...+||++-+..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999999888899999999994 334557899988753
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.8e-28 Score=276.55 Aligned_cols=205 Identities=28% Similarity=0.454 Sum_probs=166.6
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~ 226 (694)
...++++|+++.|. +++.+++++||.|.+|+.+||+||||+|||||||+|+|.+. +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 45799999999982 23689999999999999999999999999999999999653 34899887532
Q ss_pred ccCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 227 ~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
-++||..|+. .+.+..|+.|++.-.. +. ..+..+...+..++++...- ...++.||||||.|+.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 3599999986 4557789999997542 11 11566888999999964221 1345689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe-cCHHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~-G~~~~~~ 384 (694)
+|+.++.+|.+|||||||+.||..+...+.+.|.+.. | |||+||||.. -+-+.+++++.+.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--G-tvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--G-TVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--C-eEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999999999999999999998762 4 9999999964 57788999999998 65544 7776654
Q ss_pred H
Q 005488 385 A 385 (694)
Q Consensus 385 ~ 385 (694)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 4
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6e-28 Score=266.52 Aligned_cols=214 Identities=23% Similarity=0.444 Sum_probs=179.2
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~-- 224 (694)
++.++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|. .+..+|+|.+||+++.
T Consensus 261 ~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCC
Confidence 346888887642 258999999999999999999999999999999993 3456899999999875
Q ss_pred ---hhccCcEEEEccC---CcCCCCCCHHHHHHHHHhccCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCC
Q 005488 225 ---KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRG 295 (694)
Q Consensus 225 ---~~~~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~ 295 (694)
+..+..|+|||.| .-++..++|++|+.++...+.. . -++.....+.+++.++.+++.- ..+ ..+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~-----~~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE-----QPIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc-----chhhc
Confidence 2456789999987 4688899999999988332221 1 2556666677889999998842 222 34568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (694)
||||.+|||.|||.|..+|+||||||||.|.|.-+..+|++.+++++++|++||++|.++ +|+..+||||+||++|+++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIV 480 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999999996 5789999999999999998
Q ss_pred EecCH
Q 005488 376 YFGKA 380 (694)
Q Consensus 376 ~~G~~ 380 (694)
..=+.
T Consensus 481 ~e~~~ 485 (500)
T COG1129 481 GELDR 485 (500)
T ss_pred EEecc
Confidence 74443
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.6e-29 Score=238.58 Aligned_cols=207 Identities=28% Similarity=0.464 Sum_probs=174.2
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.++++||... .-|-.+|+.+..||++-++|||||||||||-.++|.+ +-+|+|.++|.++..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 4667777643 2377899999999999999999999999999999965 348999999999863
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
++.++-+|..|+..-...|.|...|.+. . +.++....+.++.+.++|.+.... .+..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~R-----s~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGR-----STNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhh-----hhhhcCcccceee
Confidence 4666678998876544468899988764 2 235566778888899999876654 3468999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 005488 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (694)
Q Consensus 305 ~IA~aL~~-----~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (694)
-+|...+. || ++|+||||.++||...+..+...|.++++.|.+||++.||++. ..+.+|++++|+.|++...
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99987654 44 7999999999999999999999999999999999999999986 5688999999999999999
Q ss_pred cCHHHHH
Q 005488 378 GKASEAM 384 (694)
Q Consensus 378 G~~~~~~ 384 (694)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999986
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=2.6e-28 Score=244.56 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=130.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-------CCcccEEEECCEeCCh-hccCcEEEEccCCcCCCCCC
Q 005488 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-------~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lT 245 (694)
+++++++++| +++|+||||||||||+++|+|.+.. ....|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999985421 1123578888877643 3357899999998766
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 005488 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDE 321 (694)
|.. . ..+++.++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12345666655 333333 45689999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
||+|||+.....+.+.|+++++ +.|||++||++. ..+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999865 789999999975 3478999999974
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.4e-28 Score=246.39 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=134.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHH
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~ 247 (694)
+++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....++++++++|+..+++.+|++
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhhhhHHHHhcCCCCCCCCceE
Confidence 45679999987 8999999999999999999972 1 22222122235689999999889999999
Q ss_pred HHHHHHHhccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh----CCCE
Q 005488 248 ETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSL 316 (694)
Q Consensus 248 Enl~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~----~P~i 316 (694)
|++.+....... .....+.... ...++++.++|++..++. +..||+|||||++||++++. +|++
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 987765432100 0011100000 014455667777766654 35799999999999999974 5799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 317 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
++|||||+|||+.+...+.+.|+++++ +.|+|+++|++ ++.+.||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 67899999995 57789999999975
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.2e-26 Score=237.38 Aligned_cols=186 Identities=16% Similarity=0.316 Sum_probs=131.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---------------CCCCccc--------EEEECCEe--
Q 005488 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP-- 222 (694)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l---------------~~~~~~G--------~I~~~G~~-- 222 (694)
+++.++++++ |++++|+||||||||||+++|++.+ ..+ .+| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~-~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHE-GSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeC-CCCCCCceEEEEEEEEcCCCc
Confidence 4567888887 7899999999999999999998321 111 134 56665532
Q ss_pred --CC---hhccCcEEEEccCCcCCC-CCCHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccCCC
Q 005488 223 --YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (694)
Q Consensus 223 --~~---~~~~~~i~yV~Q~~~l~~-~lTV~Enl~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (694)
+. ...++.++|++|+..+++ ..|..|...+............ .....++.++ +++.+..+ ..+..
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~~~~-----~~~~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQDEQ-----QEMQQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhcccccc-----ccccc
Confidence 11 134677999999888876 4577776666544322211000 0001122222 34433333 23568
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 296 VSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
||||||||++|||+|+. +|++++|||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.||++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999865 78888888884 4678999999986
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1e-26 Score=241.57 Aligned_cols=182 Identities=18% Similarity=0.246 Sum_probs=136.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE-eCCh------hccCcEEEEccCC---------cCCCCCCH
Q 005488 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (694)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~-~~~~------~~~~~i~yV~Q~~---------~l~~~lTV 246 (694)
..+++|+||||||||||+++|++.+. +...|++.+.|. ++-. ..+.++++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 45999999999999999999998654 223567888776 3211 1234799999985 34567899
Q ss_pred HHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHcCCCccccc---------------cccCccCCCCCHHHHHHHHHHHHH
Q 005488 247 KETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEI 310 (694)
Q Consensus 247 ~Enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t---------------~vg~~~~~~LSGGerqRv~IA~aL 310 (694)
.+++.++...+. .. .+....+++.+.++.+|+...... ..-+..+..||||||||++||++|
T Consensus 104 ~r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 104 TRQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 998876532111 01 122334678889999998621000 111235678999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 311 I----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 311 ~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
+ .+|+++++||||++||+.+...+.+.|++++ +|.|+|++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 488999999994 5678899998875
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=1.1e-25 Score=228.35 Aligned_cols=192 Identities=18% Similarity=0.178 Sum_probs=131.8
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-E-eCC-
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-H-PYS- 224 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G-~-~~~- 224 (694)
.|+++|+. +| .++ ++|+|... +|++++|+||||||||||+++|++.++.+. .+....+. . .+.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47777776 44 122 56666543 589999999999999999999997554322 23333321 0 111
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
...+..|++++|++.... ++.++. ..+.++..+.+ .++..++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 233566999999874311 121111 12222221111 122223333333 34568999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 305 ~IA~aL~~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
+||++|+. +|+++||||||++||+.+...+.+.|++++++|+|||++||++. .+...+|+++++++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 67899999999999999999999999999877999999999975 4667889999999875
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=4.3e-25 Score=273.06 Aligned_cols=138 Identities=25% Similarity=0.368 Sum_probs=112.6
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHh---hCCC
Q 005488 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (694)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~---~~P~ 315 (694)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+. .+..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999987642211111233444555 57889999764 443 35689999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCeEEEecCHHHHHH
Q 005488 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (694)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (694)
+|||||||+|||+.+...+++.|++++++|.|||+++|++.. + +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998889999999999863 4 8999999996 789999999998753
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.1e-26 Score=242.07 Aligned_cols=204 Identities=25% Similarity=0.323 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--- 225 (694)
.|+++||.|.|.. ..-=+..||++|+.||++-|+|.||||||||+++|.|. +.| ++|+|.+||+|++.
T Consensus 322 ~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~P-qsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQP-QSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cCC-CCCceeECCccCCCCCH
Confidence 6999999999842 22457899999999999999999999999999999994 544 58999999999963
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
++|+.++-|+-|..+|+.+= .++.. ...+.++.+++++.|.+...-.=|+-..-.||.|||||+
T Consensus 393 edYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 57888888999988887521 11111 123456677777777654332222223457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
++-.||+-+-+|+++||=-+.-||.-+..+.+.+--+ .++||||+.+|||-. -|..+||++.+.+|++++.-
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999998877654 567999999999954 58899999999999998764
No 381
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=250.84 Aligned_cols=197 Identities=27% Similarity=0.436 Sum_probs=157.4
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~ 226 (694)
...|+++||+..- ...+..|++.++.++|||-+.|.||||||||||+|+|+|..+ --+|+|.+-
T Consensus 390 ~~~i~~~nl~l~~-------p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP--~g~G~I~~P------- 453 (604)
T COG4178 390 DHGITLENLSLRT-------PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP--WGSGRISMP------- 453 (604)
T ss_pred cceeEEeeeeEEC-------CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc--cCCCceecC-------
Confidence 3579999999864 234589999999999999999999999999999999999543 235777543
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CccCCCCCHHHHHHHH
Q 005488 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVC 305 (694)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerqRv~ 305 (694)
-...+-|+||.|.+... |.||-|.|.... .. -.++.+.++|.++||++..+..-+ ++.-+.||+||||||+
T Consensus 454 ~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRla 525 (604)
T COG4178 454 ADSALLFLPQRPYLPQG-TLREALCYPNAA---PD----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLA 525 (604)
T ss_pred CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CC----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHH
Confidence 12458899999998765 999999985321 11 234567889999999887665322 1244679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
+||.|+++|++++|||.||+||+.++..+++.+++-. .+.|||-+.|++. +..+.++.+-+.
T Consensus 526 fARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 526 FARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999998743 3889999999975 456666655554
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=234.87 Aligned_cols=222 Identities=23% Similarity=0.372 Sum_probs=186.1
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC---
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--- 223 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~--- 223 (694)
.+.|+++|++.+- ....+.+++|||+++.||+++|.|-.|-|-+.|+.+|+|.. .+ .+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~~-~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-KP-ASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-cc-CCceEEECCEecccc
Confidence 4579999999752 23357899999999999999999999999999999999954 33 369999999996
Q ss_pred -Ch--hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccC----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 005488 224 -SK--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (694)
Q Consensus 224 -~~--~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (694)
+. ..+..+||||.|. -+.+.+|+.||+.+....+. ..-+.....++.+.+++++++...... ....
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Ccch
Confidence 21 2345699999986 47778999999998754321 112556677888899999998863221 1235
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
+.||||+.||+-+||+|.++|++|+..+||-|||..+...|.+.|.++++.|+.|++++-++. +++.++|||.||.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 789999999999999999999999999999999999999999999999999999999999975 6999999999999999
Q ss_pred EEEecCHHH
Q 005488 374 LLYFGKASE 382 (694)
Q Consensus 374 iv~~G~~~~ 382 (694)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 998888765
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=1.7e-25 Score=225.52 Aligned_cols=164 Identities=17% Similarity=0.269 Sum_probs=124.7
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCcccEEEECCEeCC-hhccCcEEEEccCC-----cCCCCCC
Q 005488 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHLT 245 (694)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~----G~l~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~-----~l~~~lT 245 (694)
.++++.+| +++|+||||||||||+++|. |... +..|.+..+...+. ...+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34567778 99999999999999999995 7543 33455542222222 23456799999988 4555668
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH------HHHHHHHhhCCCEEEE
Q 005488 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLFL 319 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR------v~IA~aL~~~P~iLlL 319 (694)
+.||+.+.. .. .+.+.+ +..++.||+||+|| ++||++++.+|++++|
T Consensus 93 ~~~~~~~~~---------~~----~~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------QG----ESNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------hH----HHHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 889886531 11 122233 22356899999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 320 DEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 320 DEPTsgLD~~~~~-~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
||||++||+..+. .+.+.|++++++ |+|||+++|++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999964 4577999999964
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=3.6e-24 Score=255.29 Aligned_cols=126 Identities=29% Similarity=0.453 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 005488 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (694)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL 319 (694)
+||.|++.|..... + ..+..+.++.+||.+ ..+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998865431 1 123467889999975 2333 34689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 005488 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (694)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (694)
||||+|||+.....+++.|+++.++|.|||+++|++.. .+.+|+|+.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999753 4689999999 6899999999998753
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1e-24 Score=212.56 Aligned_cols=229 Identities=21% Similarity=0.312 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcccEEEECCEeCC---
Q 005488 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYS--- 224 (694)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~~~G~~~~--- 224 (694)
+.++|++..+.. +.+...+++++|+++.+||+-++||.||||||-..|+|+|...+. .+..+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 566777766643 335567999999999999999999999999999999999965431 12334556666542
Q ss_pred h-h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 005488 225 K-S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (694)
Q Consensus 225 ~-~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (694)
. . ..+.|+.+||+|. |-|.-+|...|.-......-+.. .-..++.++.+++..+|+.+..|- -..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--M~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--MRSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH--HHhCcc
Confidence 1 1 2345889999985 44443443333222111111110 112356678899999999987764 346788
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
+|--||-|+|.||.|++.+|++|+.||||+++|+.++.+|..+|.++.+. |.||+.++||+.. +-+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEecc
Confidence 99999999999999999999999999999999999999999999999864 8899999999764 788999999999999
Q ss_pred EEEecCHHHHHH
Q 005488 374 LLYFGKASEAMA 385 (694)
Q Consensus 374 iv~~G~~~~~~~ 385 (694)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.1e-23 Score=250.80 Aligned_cols=125 Identities=27% Similarity=0.453 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 005488 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 318 (694)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~---~P~iLl 318 (694)
.+||.|.+.|..... ...+..+.++.+||... .+ +.+..|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467788877764321 01234578888999642 33 3456899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHH
Q 005488 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (694)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~ 383 (694)
|||||+|||+.....+++.|+++.++|.|||+++|++.. .+.+|+|++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999753 4679999999 79999999999875
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=2.2e-24 Score=235.03 Aligned_cols=204 Identities=23% Similarity=0.353 Sum_probs=159.2
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~ 226 (694)
++.+.++||+|.|. ++..++++++|-|.+++.+|+|||||+|||||||++.|.+. +..|.|.-.
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~------- 450 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRH------- 450 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccc-------
Confidence 45799999999983 22279999999999999999999999999999999999764 346877532
Q ss_pred ccCcEEEEccC--CcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 005488 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (694)
Q Consensus 227 ~~~~i~yV~Q~--~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (694)
...++++..|+ +.+--+.++-|++.=.. + +....+.+..++.++||....++ ...+.||+|||+||
T Consensus 451 ~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 451 SHNKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRV 518 (614)
T ss_pred ccccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCccccc----cchhhcccccchhH
Confidence 23345565664 23333567878776332 1 12345667889999999844433 24578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE-EEecCHHH
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASE 382 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~ 382 (694)
.+|+.++..|.||+|||||+|||..+...+-+.|.+. .| +||.++||.. -+-+.+++|.+..+|.+ .+.|....
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~G-gvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PG-GVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CC-ceeeeechhh-HHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999999999999999999999988875 23 8999999976 47788999999998765 56676543
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=9.8e-24 Score=229.92 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=145.5
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..+.++|+++++ ..+.+++|+++++.+|+.++|+|+|||||||+|++|.|+..+.+..=.+..-.+.+....
T Consensus 74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 368999999987 467899999999999999999999999999999999998754332222332222221110
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHh------------------ccCCCCCCHHHHHHHHHHHHHHcCC-Cccccccc
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAAL------------------LRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMI 288 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~------------------~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~v 288 (694)
.+.+-+|.+ +.-..+.-+.+-+. .+. ..+..+..+.++.+++..+|. ++..+
T Consensus 146 ~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~--- 216 (614)
T KOG0927|consen 146 KQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQD--- 216 (614)
T ss_pred HHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHH---
Confidence 111101110 00001111111000 000 012223344556666766664 33333
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHHHhccCEEE
Q 005488 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
+.+.++|||+|.|+++||+|..+|++|+|||||++||.++..-+-+.|.+. .+ ++|+++|.-. .+-..|.+|+
T Consensus 217 --k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~vCT~Ii 290 (614)
T KOG0927|consen 217 --KKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNGVCTNII 290 (614)
T ss_pred --HHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhhHhhhhh
Confidence 345789999999999999999999999999999999999998888888765 33 8999999854 4778899999
Q ss_pred EEeCCe-EEEecCHHHHH
Q 005488 368 LLGKGS-LLYFGKASEAM 384 (694)
Q Consensus 368 vL~~G~-iv~~G~~~~~~ 384 (694)
-|++++ +.|.|+.++.+
T Consensus 291 ~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred eecccceeeecCCHHHHh
Confidence 999999 67778766543
No 389
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=3.1e-22 Score=219.70 Aligned_cols=204 Identities=21% Similarity=0.347 Sum_probs=156.8
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|+|++|+..- |..+..+.+|+|++|+.|+-+.|.||||||||+|+++|+|.. |..+|.+..-.+.-.
T Consensus 432 n~i~~e~v~l~t------Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW--p~~~G~l~k~~~~~~--- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLST------PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW--PSTGGKLTKPTDGGP--- 500 (659)
T ss_pred ceEEeeeeeecC------CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc--ccCCCeEEecccCCC---
Confidence 479999999864 223456788999999999999999999999999999999954 345888865433211
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCccCCCCCHHHH
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGER 301 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~------vg~~~~~~LSGGer 301 (694)
+.+-||||.|.+--. |.||-+.|....-.+ ..+...++++...|+.++|.|..+.. +--+....||+||+
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 458899999987654 999999986321111 11222345667777777776654422 11123456999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.+.-|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999998876 4999999999976 4566688888865
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.9e-22 Score=202.38 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=121.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE--ECCEeCCh-----hccCcEEEEccCCcCCCCCC
Q 005488 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT--YNDHPYSK-----SLKSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~--~~G~~~~~-----~~~~~i~yV~Q~~~l~~~lT 245 (694)
++++++++.+| +++|+||||||||||+.+|...+ .|+.. ..|..... .....|.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 46778888887 88999999999999999997422 12211 11221111 12345888888876654
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 005488 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDE 321 (694)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL----~~~P~iLlLDE 321 (694)
| ... ....+++.++++. .+..++ .++.||+|||||++||++| +.+|++++|||
T Consensus 83 ---~-----------~~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N-----------PLC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C-----------cCC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 011 1123456677765 343443 4578999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 005488 322 PTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (694)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~---g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (694)
||+|||..+...+.+.|++++++ ++|||+++|++.. +. .+|+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~-~~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LA-SSDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cc-cccceeEEEecC
Confidence 99999999999999999998653 3689999999864 44 459999998754
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=9.3e-22 Score=210.51 Aligned_cols=173 Identities=27% Similarity=0.383 Sum_probs=134.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHH
Q 005488 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (694)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (694)
|.-=.++|..||+++++||||-||||+.++|+|.+. +++|. .. .-+++|=||--.--...||++.|.-
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHHH
Confidence 444456677788999999999999999999999664 34665 11 2348888886333235799998876
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005488 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (694)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 332 (694)
....+.... -...++++-|.|++..+..+ .+|||||.|||+||.+|.+++++++||||++-||.+.+.
T Consensus 425 ~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 425 AIRSAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hhhhhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 543321111 12346777788888777654 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 005488 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 333 ~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
.+-+.++++... ++|.+++-||..- +--++||++|.+
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999864 7899999999753 444678988874
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=2.5e-22 Score=208.28 Aligned_cols=177 Identities=17% Similarity=0.239 Sum_probs=117.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-C-C---------hhccCcEEEEccCCcC-CCCCCHHHHH-
Q 005488 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-S---------KSLKSKIGFVTQDDVL-FPHLTVKETL- 250 (694)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~-~-~---------~~~~~~i~yV~Q~~~l-~~~lTV~Enl- 250 (694)
.+++|+||||||||||+++|++.+. + ..|++..++.. + . ....-.+.|..|++.. .-..++++..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~-~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG-E-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-C-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 3999999999999999999998654 2 24555443321 0 0 0111223444444321 0011222111
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------cCCCCCHHHHHHHHHHHHHhhC
Q 005488 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGGS--------FVRGVSGGERKRVCIGNEIIIN 313 (694)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------~vg~~--------~~~~LSGGerqRv~IA~aL~~~ 313 (694)
.|. .. .... ..+.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 101 ~~~--in-gk~~----s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 101 SYR--IN-GKVV----SLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred EEE--EC-CEEe----cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 010 00 1111 23345678888888532111 11112 2378999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 314 ----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 314 ----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
|+++||||||+|||+..+..+.+.|++++++|.|||+++|++ ++.+.+|++++|.+
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987799999999995 45789999999964
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.1e-21 Score=205.86 Aligned_cols=192 Identities=27% Similarity=0.415 Sum_probs=151.3
Q ss_pred CCeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 005488 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~ 225 (694)
.|+.|-++||+|.|+ +.++++++++|-|.-...+|||||||.||||||++|.|.+. | ..|+.. +
T Consensus 583 ~PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P-~~GE~R-------K 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-P-NDGELR-------K 646 (807)
T ss_pred CCCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-C-Ccchhh-------c
Confidence 356799999999983 56789999999999999999999999999999999999764 3 467643 3
Q ss_pred hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 005488 226 SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 226 ~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (694)
..|-+||+..|+. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-|
T Consensus 647 nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaR 712 (807)
T KOG0066|consen 647 NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKAR 712 (807)
T ss_pred cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHH
Confidence 3455699999874 45556677777764322 222 2345678889999888885 467899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
|++|.--+..|+||||||||++||.++...+-+.|++. .-.||+++||-.. +.+.--.++|+.+
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 99999999999999999999999999999998888876 3379999999653 3333335666654
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=8.3e-21 Score=185.01 Aligned_cols=209 Identities=23% Similarity=0.293 Sum_probs=157.1
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~-- 225 (694)
..|++.++.|+|+ ...+++-|+|++++.|..+.++|.||||||||||+|+|.-. ...|.|.++|++.-.
T Consensus 12 ~aievsgl~f~y~-------~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-------VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEecc-------cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 3699999999994 23489999999999999999999999999999999999532 235899999986411
Q ss_pred -------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005488 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (694)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (694)
++.+..++-- +--+-..+++.+- .|+... ... + +-+++++.+.+.-. ..
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~m-ifgV~g-----~dp-~---Rre~LI~iLDIdl~-------WR 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHM-IFGVGG-----DDP-E---RREKLIDILDIDLR-------WR 144 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHH-HhhccC-----CCh-h---Hhhhhhhheeccce-------EE
Confidence 2333333333 2222335566544 444321 112 2 33455666655321 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
.+.+|-|||+||.|++-|++.=++|+|||-|-.||.-++..+++.+++-+++ |.||+..||-... +.....+++.|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 3579999999999999999999999999999999999999999999998764 8999999998764 6678899999999
Q ss_pred CeEEEecCHHHHH
Q 005488 372 GSLLYFGKASEAM 384 (694)
Q Consensus 372 G~iv~~G~~~~~~ 384 (694)
|+++..-+.++..
T Consensus 224 Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 224 GKLVDNLKYQKIK 236 (291)
T ss_pred Ceeeeccccchhh
Confidence 9998855554443
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1e-21 Score=213.22 Aligned_cols=202 Identities=23% Similarity=0.291 Sum_probs=140.5
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~ 227 (694)
..|...|.+..| +.+.+|++-++++..|..++|+|+||+||||||++|+. |.| .+.+..++.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 368888888887 57889999999999999999999999999999999994 222 222332222
Q ss_pred cCcEEEEccC-CcCCCCCCHHHHHHHHHhccCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 228 ~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
+. -+++-. +.+-.+ +.++.+...- ..+... ..++...++|..+|..+.... ...+.||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D-~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESD-TERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhcc-HHHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 21 122222 122223 3333332210 011111 233334448888888653322 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE-EEecCHHHH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEA 383 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~~ 383 (694)
+||||..+|+||+|||||+.||..+..-+.+.|..+ +.|+|+++||- .-+-..|..|+.+++-|+ .|.|.-++.
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr-~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDR-NFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccH-HHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999998888888765 47999999994 446667778888876554 455655443
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=4e-20 Score=187.57 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred cCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEecCCChHHHhccC-
Q 005488 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~Tvi~~~H~~~~~i~~~~D- 364 (694)
.+.+||||||||+.++++| +.+|+++++||||+|||+.++..+.+.|++++++ | .|+|++||++.. ..+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4568999999998877554 5899999999999999999999999999999776 5 479999999754 446665
Q ss_pred -EEEEEeCCe
Q 005488 365 -KLILLGKGS 373 (694)
Q Consensus 365 -~i~vL~~G~ 373 (694)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.9e-20 Score=202.01 Aligned_cols=205 Identities=24% Similarity=0.314 Sum_probs=157.3
Q ss_pred CCeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 005488 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (694)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~ 225 (694)
.++.+++.+|+|.|.. +.- +++.+++..++.-+..+++|+||+||||++|++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----SEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----cch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 3567999999998832 122 79999999999999999999999999999999998654 3467766543
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 005488 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (694)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (694)
|.+|+|-.|...=+-.+.|-+--.+ ...+ | ..+ ++.+..-+..+||+.- +....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~vd~~-~~~~-p-G~~----~ee~r~hl~~~Gl~g~----la~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAVDFM-EKSF-P-GKT----EEEIRRHLGSFGLSGE----LALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHHHHH-HHhC-C-CCC----HHHHHHHHHhcCCCch----hhhccccccCCcchhHHH
Confidence 5679999998654434455443322 2222 2 223 3445667888999632 122335789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE-ecCH
Q 005488 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY-FGKA 380 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~-~G~~ 380 (694)
+|.....+|.+|+|||||+.||-.+-..+.+.|+.+ +-.||+|+|+.+ -+-..|+.+++.++|++.- .|..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeeccH
Confidence 999999999999999999999999999999988876 337999999954 4777899999999999853 4443
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=4.6e-20 Score=185.33 Aligned_cols=153 Identities=23% Similarity=0.215 Sum_probs=110.0
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCccc-EEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 005488 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGG-SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (694)
Q Consensus 172 iL~~vs~~i~~Ge-~~aIvGpsGsGKSTLl~~L~-G~l~~~~~~G-~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (694)
-..++|+++.+|+ +++|.|||||||||||++|+ +.+. ...| .+-.. -...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~~vp~~-------~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGLPIPAA-------EGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCCCcccc-------ccccCcCccEEEEec-------
Confidence 3457899999995 89999999999999999998 2110 0011 00000 001234444432111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005488 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (694)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (694)
+.++..+ .....+|+||||++.|+++ +.+|+++++|||++|||+
T Consensus 80 ------------------------------g~~~~l~-----~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIE-----QSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhh-----cCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 1111111 1124799999999999988 489999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 005488 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (694)
Q Consensus 329 ~~~~~i~-~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (694)
.....+. ..++++.+.|.|+|++||+. ++.+.+|++++|++|++.+.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 46888877799999999983 577899999999999998874
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=3.2e-19 Score=176.02 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 296 LSGGerqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|+|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999975
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=6.7e-20 Score=196.37 Aligned_cols=170 Identities=32% Similarity=0.499 Sum_probs=127.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-------------CChhcc----------CcEEEEc
Q 005488 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-------------YSKSLK----------SKIGFVT 235 (694)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~-------------~~~~~~----------~~i~yV~ 235 (694)
..+||++++|+||||-||||-+|+|+|.+. |. =|+ +++.| +...++ .++-||.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~-PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELK-PN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccc-cC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 357899999999999999999999999765 33 232 22221 111111 1122333
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 005488 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (694)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~ 315 (694)
--|..+. .||.|-|.-. ...-..+++++.++|.+..|..+ .+|||||-||++||.+++++++
T Consensus 172 ~iPk~~K-G~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVK-GKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhc-chHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 3344443 3777766532 11235778999999998877654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
++++|||||-||...+...-+.++++++.+++||++-||+.- +--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999999999889999999999863 4446788888863
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.79 E-value=2.4e-19 Score=180.04 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=103.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (694)
++.|++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 346788887765 79999999999999999999998432 1224444422 136778888999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005488 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (694)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (694)
|+.++.. ... ...+++.++++.+++ .+|+++++||||+|+|+
T Consensus 79 ~l~~~~s------~~~-~e~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFY-AELRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHH-HHHHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9987531 112 222557777776642 69999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEecCCC
Q 005488 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 329 ~~~~~i~-~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
.....+. ..++.+.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9988775 468888777899999999975
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=2.4e-18 Score=213.80 Aligned_cols=199 Identities=24% Similarity=0.377 Sum_probs=144.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCC--CCcccEEEECCEeCCh--------------hccC-
Q 005488 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLME--PTVGGSITYNDHPYSK--------------SLKS- 229 (694)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-G----~l~~--~~~~G~I~~~G~~~~~--------------~~~~- 229 (694)
=|+||+.+|+-|.+++|.|.||||||||++-.. - .+.. ....--|.+|-.|+.+ ..|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997433 1 1110 0123346777666521 0000
Q ss_pred ---------------c---------------EEEEccCCcCC--------------------------------CCCCHH
Q 005488 230 ---------------K---------------IGFVTQDDVLF--------------------------------PHLTVK 247 (694)
Q Consensus 230 ---------------~---------------i~yV~Q~~~l~--------------------------------~~lTV~ 247 (694)
. -|++.=+-.++ -.|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 0 11111111111 136777
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCC
Q 005488 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTS 324 (694)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPTs 324 (694)
|.+.|... ..+-.+..+.|.++||.... +| +....|||||.||+-||..|..+ +.+++|||||+
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77666421 11234456778889986432 23 45567999999999999999876 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCeEEEecCHHHHHH
Q 005488 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (694)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (694)
||++.....+++.|++|.+.|.|||++.|++. +.+.||.|+=|. .|+|++.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999974 678899999994 379999999999864
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=6.6e-19 Score=191.18 Aligned_cols=188 Identities=22% Similarity=0.358 Sum_probs=135.6
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.|.++||-.-. + ....+...++|.|+||--+.|.||||||||+|.++|.|.. |...|.... ...
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW--Pvy~g~L~~-------P~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW--PVYNGLLSI-------PRP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC--cccCCeeec-------CCC
Confidence 47788876532 2 2345889999999999999999999999999999999954 333343321 123
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccC----ccCCCCCHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~----~~~~~LSGGerq 302 (694)
.++-|+||.|..- ..|.||-+-|..... ..++.. ++....+++.+.|++......|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888877642100 001122 23344556666665544433221 122459999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (694)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~ 362 (694)
|+++||.+.++|+.-+|||.||+.....+..+.+..++ .|.+.|-++|+|+- +++
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl--wk~ 674 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL--WKY 674 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH--HHH
Confidence 99999999999999999999999999999999988765 49999999999973 554
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=4.1e-19 Score=181.33 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=116.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE-EEccCCcCCCCCCHH
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (694)
.+.+.+|+++++.+|++++|.||||+|||||++.++- . .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-I------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-H------------------HHHHHhCCCcCcccEEEe-----
Confidence 4468999999999999999999999999999999982 1 1112333 5665542221
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 005488 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (694)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL--~~~P~iLlLDEP--- 322 (694)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 012334445655322 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 005488 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (694)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (694)
|++||+...... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3344443 48899999996 46788999999999999987764
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.1e-17 Score=190.14 Aligned_cols=128 Identities=28% Similarity=0.485 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 005488 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (694)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL 319 (694)
.|||.|-..|... .+ .-.+..+.|..+||.-. .+| +....|||||.|||-+|.+|.+.. -+++|
T Consensus 783 ~MTveEA~~FF~~------~p---~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEA------IP---KIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhc------ch---HHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 3566666666532 11 22344566778888632 233 456789999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCeEEEecCHHHHHH
Q 005488 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (694)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (694)
||||+||-.....++++.|.+|.++|.|||+|-|++. +.+.||.|+=|. .|+|+..|+|+|+.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999975 689999999983 479999999999874
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=183.30 Aligned_cols=205 Identities=26% Similarity=0.410 Sum_probs=149.5
Q ss_pred eEEEEeEEEEEeec----cc--------------ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-
Q 005488 149 YLKFTDVTYKVILK----GM--------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME- 209 (694)
Q Consensus 149 ~l~~~nvs~~~~~~----~~--------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~- 209 (694)
.+.|+|++..+... +. ....+..+|+|||++++||++++|+|+|||||||||++|+|....
T Consensus 357 p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~ 436 (593)
T COG2401 357 PIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR 436 (593)
T ss_pred ccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcc
Confidence 47888888766421 00 112345799999999999999999999999999999999985321
Q ss_pred -----CCcccEEEECCEeCChhccCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005488 210 -----PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283 (694)
Q Consensus 210 -----~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 283 (694)
.+++|.|.+--.. ..+.+|-+. .-|..-|+.|.+.- .+.+ -..+.++++..||.+.
T Consensus 437 ~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f~~~tilehl~s-----~tGD------~~~AveILnraGlsDA 498 (593)
T COG2401 437 GEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEFGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDA 498 (593)
T ss_pred cccccCCCCCceeccccc-------hhhccCcccccccCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchh
Confidence 1346776553221 123445432 22335577777642 1111 1235678899999753
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhc
Q 005488 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK 362 (694)
Q Consensus 284 ~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~ 362 (694)
.- -....++||-|||.|..||.++...|.+++.||--+.||+.++..+..-|.+++++ |.|++++||+|.- +-.+
T Consensus 499 vl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL 574 (593)
T COG2401 499 VL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNAL 574 (593)
T ss_pred hh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-Hhcc
Confidence 22 12345789999999999999999999999999999999999999999999999865 9999999999853 3334
Q ss_pred -cCEEEEEeCCeEE
Q 005488 363 -FDKLILLGKGSLL 375 (694)
Q Consensus 363 -~D~i~vL~~G~iv 375 (694)
-|+++++.-|++.
T Consensus 575 ~PD~li~vgYg~v~ 588 (593)
T COG2401 575 RPDTLILVGYGKVP 588 (593)
T ss_pred CCceeEEeeccccc
Confidence 5999998777653
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.6e-18 Score=180.07 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
.|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 468999999998
Q ss_pred CCe
Q 005488 371 KGS 373 (694)
Q Consensus 371 ~G~ 373 (694)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=1e-17 Score=162.84 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998666889999999975 467799999996
Q ss_pred C
Q 005488 371 K 371 (694)
Q Consensus 371 ~ 371 (694)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=2.1e-17 Score=197.65 Aligned_cols=135 Identities=23% Similarity=0.420 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHhccCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 005488 243 HLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (694)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P- 314 (694)
.+||.|.+.|.-.+..+.. .. -.+..+++ +.++.+||.+. .|+ .+..|||||+|||.||++|..+|
T Consensus 436 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~~ 509 (943)
T PRK00349 436 ELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGLT 509 (943)
T ss_pred cCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCCC
Confidence 6899999998544322110 00 01223344 36788888754 454 45689999999999999999997
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 005488 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (694)
Q Consensus 315 -~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (694)
++++|||||+|||+.....+.+.|+++++.|.|||+++|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 510 ~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 510 GVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999763 4 569999999 8999999999998753
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=3.4e-17 Score=195.60 Aligned_cols=134 Identities=24% Similarity=0.411 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHhccCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 005488 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (694)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P- 314 (694)
.|||.|.+.|...+..+..... .+..++ .+.+..+||... .+ +.+..|||||+|||.||++|..+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999998765432210000 011112 234667787543 33 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHH
Q 005488 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (694)
Q Consensus 315 -~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (694)
+++||||||+|||+.....+.+.|+++.++|.|||+++|++.. ...||+|++| ++|++++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~--i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET--IRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH--HhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999753 4689999999 899999999998874
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.9e-16 Score=165.03 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc
Q 005488 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (694)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~ 363 (694)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++ +.+ ++++|+.. .+...+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCE-EEEeCCch-hccchh
Confidence 3458999999999999985 799999999999999999999999999865 334 55555433 344556
Q ss_pred ---CEEEEEeCCeE
Q 005488 364 ---DKLILLGKGSL 374 (694)
Q Consensus 364 ---D~i~vL~~G~i 374 (694)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.68 E-value=1.4e-16 Score=160.36 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=104.2
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHh
Q 005488 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (694)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (694)
.++++.+|++++|+|||||||||||++|++..... ..|.. . ...+..++|..|....+ ...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~-~~g~~------~-~~~~~~i~~~dqi~~~~---~~~d~i----- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA-QIGCF------V-PAESASIPLVDRIFTRI---GAEDSI----- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH-HcCCC------c-cccccccCCcCEEEEEe---cCcccc-----
Confidence 34555589999999999999999999999532111 12211 0 01122344433322111 111110
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005488 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335 (694)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 335 (694)
+ .....++++++ |+..+.+++.+|+++|+||||+|||+.....+.
T Consensus 86 -----------------------------~-----~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 -----------------------------S-----DGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred -----------------------------c-----CCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 0 01234666555 577777889999999999999999999888776
Q ss_pred H-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 336 Q-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 336 ~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...++.++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 4666766789999999985 4678899999999999998887544
No 413
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.67 E-value=4.1e-18 Score=169.62 Aligned_cols=197 Identities=28% Similarity=0.533 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 005488 491 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 568 (694)
Q Consensus 491 ~Q~~~L~~R~~~~-~R~~~~~-~~r~~~~~~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~e 568 (694)
+|++.+++|+++. +|++... ...++..++.++++|.+|.+++ ++.++. ++.|++++.+...++............|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999985 7888666 7889999999999999999886 344455 7788888887776655544555778899
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005488 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 648 (694)
Q Consensus 569 r~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~a~~~ 648 (694)
|..+.||+.++.|++.+|++|+.+.+++..++..+++.++.|++.|++.+ +|+.+++.++++.+++.++|.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 6677788888889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccccC--cc------CCcccHHHHHHHhhh
Q 005488 649 DLKKATTLASVTIMTFMLAGGYFVQV--SK------QTLHPQSLVYERIVQ 691 (694)
Q Consensus 649 ~~~~A~~~~~~~~~~~~lf~Gf~i~~--~~------~~l~p~~~~~e~~~~ 691 (694)
+.+.+..+.+++..++++++|.++|. .| .+++|+.|++|++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~ 207 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRA 207 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999983 24 268888999998753
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.2e-17 Score=175.49 Aligned_cols=214 Identities=26% Similarity=0.364 Sum_probs=148.0
Q ss_pred eeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~--- 224 (694)
..|.++|.+.+- ..+.++.|-|++|--|..+++|||||-||||||+.|+.|-..-+..=+|++..+.+-
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 358888877653 456789999999999999999999999999999999987543222334555544431
Q ss_pred -----hhc---cCcEEEEccCCcC-----CCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005488 225 -----KSL---KSKIGFVTQDDVL-----FPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (694)
Q Consensus 225 -----~~~---~~~i~yV~Q~~~l-----~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~ 290 (694)
..+ .++...+..++.| -...|+.|-+.-.+ .+|- +-....+.++..+|.-||.+.-.. +
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~ 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----E 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----c
Confidence 000 1111222111111 12346666664322 2221 111223456677888888764322 2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
+....+|||-|-||++||||...|-+|.|||||+.||-....-+-+.|..+. +|.++++||-.. +-..|..|+.|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHhhhh
Confidence 3456799999999999999999999999999999999998887888887764 599999999764 677899999999
Q ss_pred CCeEE-EecCH
Q 005488 371 KGSLL-YFGKA 380 (694)
Q Consensus 371 ~G~iv-~~G~~ 380 (694)
+-++- |.|..
T Consensus 484 ~qkLhyYrGNY 494 (807)
T KOG0066|consen 484 NQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhcchH
Confidence 87764 44553
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=5.6e-16 Score=156.23 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=99.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE-EEccCCcCCCCCCHH
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (694)
++.+.+|+++++++|++++|+||||+||||+++++++... ..++| || |..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 4579999999999999999999999999999999987321 11122 33 3334556777
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005488 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (694)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD 327 (694)
|+|... ++..+..+. ....+|+|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 776432 122111111 124689999965 56667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEecCCC
Q 005488 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9776655 4567777777999999999854
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.62 E-value=1.5e-15 Score=154.52 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=109.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (694)
++.+.+|++++.++ ++++|.||||||||||||.+++.... |+ .|..+.. .+..++++.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34589999999987 99999999999999999999863321 11 1222221 1345777765 566777777
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---C
Q 005488 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEP---T 323 (694)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEP---T 323 (694)
++..+. |. .|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 765431 11 133344444444579999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
+++|.... ....++.+.+. +.|+|++||+. ++.+++|++.-+++|++...+..+++.
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88888652 23344555555 88999999995 567889988888899998877766653
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.57 E-value=8.9e-15 Score=153.20 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=96.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccC
Q 005488 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (694)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~-----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (694)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|++. .+.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchH------
Confidence 5789999999999999999998654 45899999999874 234456788888653 344555544210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005488 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (694)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L 338 (694)
.+ |+ ..+ .+..+|+++++|||++ ...+...+
T Consensus 183 ------~~--------------------------------~~---~~~--i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 183 ------AE--------------------------------GM---MML--IRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------HH--------------------------------HH---HHH--HHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 00 122 2235999999999974 23344455
Q ss_pred HHHHHCCCEEEEEecCCChHHH------------hccCEEEEEeCCeEEEecCHHHH
Q 005488 339 QDIAEAGKTVVTTIHQPSSRLF------------HKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 339 ~~l~~~g~Tvi~~~H~~~~~i~------------~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
+.+. .|.|+|+++|++..+-. ..|||+++|++|+ ..|+++++
T Consensus 214 ~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5543 69999999998643222 5689999999887 66666554
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.54 E-value=3.4e-14 Score=151.67 Aligned_cols=178 Identities=26% Similarity=0.373 Sum_probs=133.0
Q ss_pred ccceeeceEEEEeCCe-----EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCC
Q 005488 169 EKDILNGITGSVNPGE-----VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge-----~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~ 243 (694)
.+.-+.+..+.|+.|+ ++..+|.||-||||++++++|++. |...|+|-. -.++|=||.-.-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 3456788888888885 789999999999999999999765 444555432 236777776433234
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005488 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (694)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPT 323 (694)
.|||+.+.---+. .. ....-+.++++-|.+++..|.. +.+|||||.||+++|..|=..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~----ay---~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD----AY---MHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh----hh---cCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5899877532111 00 1123456777777777666654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
+-||++.+...-..+++.- +.++|-.++-||..-.. -++||+++.+
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999988888888864 55889999999965432 3689987764
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.47 E-value=1.9e-12 Score=141.67 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc--
Q 005488 294 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-- 362 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-- 362 (694)
..+|+||+|++.||+.|+ .+|+||+||||+++||+..+..+++.+.++ +..+++++|++.. +...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999885 799999999999999999999999988754 4578899998643 3333
Q ss_pred cCEEEEEeCCeE
Q 005488 363 FDKLILLGKGSL 374 (694)
Q Consensus 363 ~D~i~vL~~G~i 374 (694)
.++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 357999999987
No 420
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.44 E-value=1.3e-13 Score=123.98 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=61.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCcCCCCCC
Q 005488 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (694)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lT 245 (694)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|. .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999986 5889999998742 345567788777 564 59
Q ss_pred HHHHHHH
Q 005488 246 VKETLTY 252 (694)
Q Consensus 246 V~Enl~~ 252 (694)
++|||.+
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999987
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.43 E-value=7e-14 Score=138.85 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEE
Q 005488 294 RGVSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILL 369 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~--~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (694)
..+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 468887776 444444 499999999999999999877765 556777764 88999999996 467777754444
Q ss_pred eCCeEEE
Q 005488 370 GKGSLLY 376 (694)
Q Consensus 370 ~~G~iv~ 376 (694)
.++++..
T Consensus 135 ~~~~~~~ 141 (185)
T smart00534 135 RNLHMSA 141 (185)
T ss_pred eEEEEEE
Confidence 4454443
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.41 E-value=1.6e-13 Score=139.47 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 295 GVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
.+|||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+ +.-+|++||++ .++..+|+.+-+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--ccccccccccccc
Confidence 69999999999997664 46799999999999999999999999999864 57899999995 4688999887764
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=2e-12 Score=131.38 Aligned_cols=132 Identities=19% Similarity=0.228 Sum_probs=87.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCC-CCCHHHH
Q 005488 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKET 249 (694)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~-~lTV~En 249 (694)
.|-+|+++.=..+.+++|.||||+|||||||.++..... ...|...... ...++|..|....+. ..++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh-
Confidence 355566554222389999999999999999999832111 1235433221 234677777532221 111111
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005488 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (694)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPTsgLD 327 (694)
++| .-|-||++++++++.+|++++||||++|+|
T Consensus 88 ---------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 88 ---------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred ---------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 112 237899999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHC---CCEEEEEecCCC
Q 005488 328 STTALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (694)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~---g~Tvi~~~H~~~ 356 (694)
+.....+ ...++++.+. +.++|++||++.
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 9764444 5688888764 248999999964
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.38 E-value=6.6e-13 Score=157.34 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=91.1
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCc-CCCCCCHHHHHHH
Q 005488 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (694)
Q Consensus 175 ~vs~~i~~G-e~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~-l~~~lTV~Enl~~ 252 (694)
.+|+.+.+| ++++|.||||+|||||||+|+|.... ...| .+||.... .+ .+.+.+..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIFA 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhheee
Confidence 378888888 99999999999999999999985211 1122 13333321 11 11111100
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005488 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (694)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 332 (694)
.+... + .+. .....+|+|++++..|++.+ .+|+++|+|||++|+|+....
T Consensus 372 --------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 0 011 11246999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHHCCCEEEEEecCCC
Q 005488 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 333 ~i-~~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
.+ ...++.+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5678888778999999999964
No 425
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.36 E-value=2.2e-12 Score=133.79 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=105.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC--CE-eCC-hhccC---cEEEEccCCcCCCCCCHHHHH
Q 005488 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH-PYS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (694)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~--G~-~~~-~~~~~---~i~yV~Q~~~l~~~lTV~Enl 250 (694)
+.+..||.++|+||+|+|||||++.|.+..........+++- +. ... .++.+ .+-++.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 478899999999999999999999999755321111222221 11 111 11111 1222222221 111111
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHH----------H-cCCCccccccccCccCCCCCHHH--------HHHHHHHHHHh
Q 005488 251 TYAALLRLPNTLTKQQKEKRAIDVIN----------E-LGLERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEII 311 (694)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~----------~-lgL~~~~~t~vg~~~~~~LSGGe--------rqRv~IA~aL~ 311 (694)
..... ..+.++...+ . -.+.+.+++..|. ..+.+|||+ +||+++||++.
T Consensus 86 ~~~~~-----------~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~ 153 (249)
T cd01128 86 QVAEM-----------VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIE 153 (249)
T ss_pred HHHHH-----------HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCC
Confidence 11000 0000111100 0 0123334444433 234589999 99999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 312 INPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~-i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
.+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++.. ...+|.|.+|+.|++
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 99999999 999999766554 54 55555457899999999875 578999999999987
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=1.8e-12 Score=131.30 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 005488 300 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (694)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPT-----sgLD~~~~~~i~~~L~~l~~ 343 (694)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=1.8e-11 Score=124.91 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=87.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (694)
++.+.+|+++.+++|++++|.||||+||||+++++++.... ...|...... . -.++|..|- |..+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-S------ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-c------eEEeccceE---EEEecCcc
Confidence 35689999999999999999999999999999999983221 2346543221 1 123333221 11111111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005488 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (694)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPTsgL 326 (694)
++. .++| ..|-+|++-...-+.+|+++|||||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 12444454444456789999999999998
Q ss_pred CHHHHHHH-HHHHHHHHHC-CCEEEEEecCCC
Q 005488 327 DSTTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (694)
Q Consensus 327 D~~~~~~i-~~~L~~l~~~-g~Tvi~~~H~~~ 356 (694)
|+.....+ ...++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 87766664 5667777765 889999999965
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.29 E-value=4e-12 Score=136.05 Aligned_cols=185 Identities=25% Similarity=0.357 Sum_probs=125.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------------------hccCc--EEEEccCC
Q 005488 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------------------SLKSK--IGFVTQDD 238 (694)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~--------------------~~~~~--i~yV~Q~~ 238 (694)
+||++.+++|.||-||||-+++|+|++.. +.++.. ++-+... .++.. .-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kp-nlg~~~--~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRYD--NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCC-CCCCCC--CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 58999999999999999999999998753 322210 1111110 00100 01222211
Q ss_pred cCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005488 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (694)
Q Consensus 239 ~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl 318 (694)
... ..+|.++|. ....++...++++.+.|.+..+..+ ..|||||-||.+||.+-+.+.++.+
T Consensus 175 r~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 175 RAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeE
Confidence 111 123444332 1122234566777777776666543 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-----CeEEEecCHHHHHHHH
Q 005488 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-----GSLLYFGKASEAMAYF 387 (694)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-----G~iv~~G~~~~~~~~f 387 (694)
+|||.+-||...+.+--..++.+....+=||++-||++- +--+.|-|.+|.. |-+.---+..+..+-|
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 999999999999999999999998888999999999874 4445788888864 3333333445555444
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.25 E-value=1.2e-11 Score=142.88 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 005488 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (694)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ ++|||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 45789999999
Q ss_pred eCCe
Q 005488 370 GKGS 373 (694)
Q Consensus 370 ~~G~ 373 (694)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.24 E-value=6.2e-11 Score=131.98 Aligned_cols=174 Identities=20% Similarity=0.274 Sum_probs=113.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC---Ch---------hccCcEEEEcc
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~---~~---------~~~~~i~yV~Q 236 (694)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 34689999 999999999999999999999999999854 3 3579999865443 21 24567889986
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH-HHHhhCCC
Q 005488 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (694)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA-~aL~~~P~ 315 (694)
.+.-. -.+....+.+ -.+.|.+..-|. |..+- ..+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH----
Confidence 54211 0111111111 012222222221 22111 01111 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 005488 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 316 iLlLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (694)
+.+.|| |+|+|+.....+.+.++++.+ .|. ||++.+||.+. ..||++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 679999999999999999873 575 99999999874 6799999999999999999765
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.22 E-value=2e-11 Score=141.08 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=69.7
Q ss_pred cCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 005488 292 FVRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~----------~~P~iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (694)
.+..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34679999999999999887 599999999998 789999999999999998 5889999999965 45
Q ss_pred hccCEEEEEeC-CeE
Q 005488 361 HKFDKLILLGK-GSL 374 (694)
Q Consensus 361 ~~~D~i~vL~~-G~i 374 (694)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999986 554
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.21 E-value=3.1e-11 Score=138.84 Aligned_cols=76 Identities=24% Similarity=0.390 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||+||+|. +...||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 489999999999999997 5899999999999999999999999999975 789999999985 458999999998
Q ss_pred CCe
Q 005488 371 KGS 373 (694)
Q Consensus 371 ~G~ 373 (694)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 753
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=3.8e-11 Score=148.21 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 005488 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (694)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (694)
..++.|||||++|++||++|+. +|++|||||||+|||+.+...+++.|+++...|++|++|||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4567899999999999999986 89999999999999999999999999999888999999999975 467
Q ss_pred hccCEEEEEeCC
Q 005488 361 HKFDKLILLGKG 372 (694)
Q Consensus 361 ~~~D~i~vL~~G 372 (694)
..+|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 789999999754
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=2.1e-11 Score=145.00 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (694)
..+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. .+..+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999998 8999999999999999998888854 677777779999999999542 22334444433 45
Q ss_pred eEEEe
Q 005488 373 SLLYF 377 (694)
Q Consensus 373 ~iv~~ 377 (694)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.16 E-value=3.4e-10 Score=129.84 Aligned_cols=138 Identities=23% Similarity=0.384 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH------HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 005488 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (694)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P 314 (694)
+..|++.|.+.|...+.+.+. .....+..+++ +|..+||.... .++....|||||.||+-+|..+=.+=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccc
Confidence 346788888888766543211 11111222222 33445665321 13445689999999999999997653
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 005488 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (694)
Q Consensus 315 --~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (694)
=+++||||+-||-+..-.++++.|++|.+.|-|+|++.||+ ++.+.||+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 46799999999999999999999999999999999999995 467899999987 4589999999999985
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=1.3e-10 Score=118.32 Aligned_cols=135 Identities=20% Similarity=0.238 Sum_probs=89.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (694)
++.+-+|+++..++|++++|.||||+||||+++.+++...- ...| -.+... ..+++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCcc-ccEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999974221 0111 111110 1112221 22222222222
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005488 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (694)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPTsgL 326 (694)
++.. ++| .-|-+|++-....+.+|++++||||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2221 111 12445554444455789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHC-CCEEEEEecCCC
Q 005488 327 DSTTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (694)
Q Consensus 327 D~~~~~~i~~~-L~~l~~~-g~Tvi~~~H~~~ 356 (694)
|+.....+... ++.+.+. +.++|++||+..
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99998888888 7777765 899999999964
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.11 E-value=6.8e-10 Score=114.19 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=91.7
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhcc
Q 005488 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (694)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTL-l~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (694)
-+++|+++.|.|+|||||||| ++++.+... .| ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 489999999999999999999 688886332 12 123455532 35555555543221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHH
Q 005488 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGL----DST 329 (694)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgL----D~~ 329 (694)
. .. ++.... +.-...+ .. ..+|+++.++-.+.+.+-. +|+++++||||+++ |+.
T Consensus 76 ~--~~---------~~~~~~-~~l~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--DI---------NKKLIS-GKLLYIP-----VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--ch---------HHHhhc-CcEEEEE-----ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 11 111110 1000001 01 2367776665555444333 69999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCh------HHHhccCEEEEEe
Q 005488 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (694)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvi~~~H~~~~------~i~~~~D~i~vL~ 370 (694)
....+.+.++.+++.|.|+++++|+... .+...+|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998778887776654321 0123457777776
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.10 E-value=1e-10 Score=118.06 Aligned_cols=63 Identities=22% Similarity=0.487 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 005488 294 RGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988776 899999999999999999999999887765789999999863
No 439
>PRK13695 putative NTPase; Provisional
Probab=99.09 E-value=5.3e-11 Score=116.85 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 005488 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (694)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (694)
..+||+++-+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 33444 445666666666799999999984 24567899999999
Q ss_pred CeEEEec
Q 005488 372 GSLLYFG 378 (694)
Q Consensus 372 G~iv~~G 378 (694)
|++.+.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997763
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.09 E-value=1e-09 Score=108.13 Aligned_cols=79 Identities=19% Similarity=0.097 Sum_probs=64.8
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCCEEEEEecCCCh-----
Q 005488 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS----- 357 (694)
Q Consensus 292 ~~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~----- 357 (694)
.+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34578999998 4445555667999999999999999 888888889999988889999999998653
Q ss_pred ---HHHhccCEEEEEe
Q 005488 358 ---RLFHKFDKLILLG 370 (694)
Q Consensus 358 ---~i~~~~D~i~vL~ 370 (694)
.+...+|.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 1457789999886
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=99.04 E-value=4.8e-10 Score=136.41 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.8
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCE
Q 005488 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (694)
Q Consensus 292 ~~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~ 365 (694)
.+..|||||++ |++||++++.+|+++|+||||++||+..+..+.+.|..+++.+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555666788999999999999999999999999999998776889999999963 6788999
Q ss_pred EEEEeC
Q 005488 366 LILLGK 371 (694)
Q Consensus 366 i~vL~~ 371 (694)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=5.6e-10 Score=140.66 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHhccCCCCCCHH---HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH------HHHHHHHHhhCC
Q 005488 244 LTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEIIINP 314 (694)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq------Rv~IA~aL~~~P 314 (694)
.|+.+||.+ . +. .+.+ ....+..+++.. +... |+.++. ...||||||| |++||++++.+|
T Consensus 1156 ~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1156 GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 599999997 2 11 1111 111223333322 2333 565543 2479999999 999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCChHHHhc
Q 005488 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHK 362 (694)
Q Consensus 315 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvi~~~H~~~~~i~~~ 362 (694)
++|+|||||+|||+.+...+.+.|..+.. .|.|||++||++.. +..+
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~~ 1276 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VELL 1276 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHHH
Confidence 99999999999999999999999988742 37899999999753 4444
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.00 E-value=1.1e-09 Score=135.10 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=69.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc
Q 005488 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (694)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~--------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~ 362 (694)
..+..|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ..-++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4568899999999999999996 89999999999999999999999999999888999999999743 23345
Q ss_pred cCEEEEEeC
Q 005488 363 FDKLILLGK 371 (694)
Q Consensus 363 ~D~i~vL~~ 371 (694)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 566666654
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.00 E-value=6.5e-09 Score=125.03 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=65.0
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCChH--------HHhccCEEEEEeCCeEEEecCHH
Q 005488 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 311 ~~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~--------i~~~~D~i~vL~~G~iv~~G~~~ 381 (694)
..+|+++++|||+.+| |+..+..+.+.++.+.+.|.++|++||++... +.+.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999988899999999998642 1367999999999998777643
Q ss_pred HHHHHHHhcCC
Q 005488 382 EAMAYFSSIGC 392 (694)
Q Consensus 382 ~~~~~f~~~G~ 392 (694)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
No 445
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=7e-09 Score=101.03 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=61.8
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEE
Q 005488 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLI 367 (694)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~ 367 (694)
|+.....-|-||-=---+.+. .++.-|.+||||-++|.+.-+.+++..|+++++.|.-+|+.||-|- +..+ --.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEE
Confidence 344445688898654444444 4567899999999999999999999999999999999999999874 2222 14566
Q ss_pred EEeCCe
Q 005488 368 LLGKGS 373 (694)
Q Consensus 368 vL~~G~ 373 (694)
-++.+-
T Consensus 200 ~~~~~g 205 (233)
T COG3910 200 EISESG 205 (233)
T ss_pred EEecCC
Confidence 666543
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.98 E-value=1.1e-09 Score=117.59 Aligned_cols=143 Identities=19% Similarity=0.237 Sum_probs=93.6
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-CChhccCcEEEEccCCcCCCCCCHHHHHHHHH
Q 005488 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (694)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~-~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~ 254 (694)
+++.+++|+.++|+||+|||||||+++|++.+. +..|.+.+.+.. +....+..+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~--------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG--------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC---------------
Confidence 567899999999999999999999999998653 345666664311 00000111222111000
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005488 255 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (694)
Q Consensus 255 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 334 (694)
+ + ...++ ..-.+..+|-.+|+++++|||.+ .++
T Consensus 200 ------------------------------~---~---~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 200 ------------------------------Q---G---LAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ------------------------------C---C---cCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 0 0 00111 11235556778999999999996 345
Q ss_pred HHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 005488 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (694)
Q Consensus 335 ~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (694)
.+.++.+...+.+++.++|..+. .+..||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~~--~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGSP--EEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCCH--HHHHHHHHHHhhccccccCCCHHHH
Confidence 66677665423467999999773 5668999999999998888877765
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.97 E-value=2.3e-09 Score=102.09 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH
Q 005488 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (694)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~ 358 (694)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45566677888899999999999999995 4555555666666555555689999999987653
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.96 E-value=3.1e-09 Score=117.74 Aligned_cols=170 Identities=18% Similarity=0.173 Sum_probs=115.7
Q ss_pred eEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 005488 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (694)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~ 228 (694)
.++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|.. . +..|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~-~~~gvI~~iGer------ 193 (432)
T PRK06793 130 AFEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-K-ADINVISLVGER------ 193 (432)
T ss_pred chheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-C-CCeEEEEeCCCC------
Confidence 355666665442 234688885 999999999999999999999999999854 2 345666555442
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (694)
..+|+|.+..... .-|+.+. ..+ ....+-|.|+|+|++.+.
T Consensus 194 --------------g~ev~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 194 --------------GREVKDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLA 234 (432)
T ss_pred --------------cccHHHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHH
Confidence 2467766543211 1122110 111 123578999999999998
Q ss_pred HHh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 005488 309 EII-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 309 aL~-------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (694)
+.+ .++-++++|+||+..|+. .+|-..+.+.-..|.+..+.+|- + .+ ++|.-..++|.|...++.
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~-~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K-KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h-hH---HHHhccCCCcceEEEEEE
Confidence 888 789999999999999997 45555555554458888888884 2 23 444444578888777654
No 449
>PRK01156 chromosome segregation protein; Provisional
Probab=98.91 E-value=3.3e-09 Score=129.43 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=66.7
Q ss_pred cCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C-CEEEEEecCCChHHHhc
Q 005488 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-A-G-KTVVTTIHQPSSRLFHK 362 (694)
Q Consensus 292 ~~~~LSGGerqRv~I------A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~-g-~Tvi~~~H~~~~~i~~~ 362 (694)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.++...+ . | .|+|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 457899999999975 5899999999999999999999999999999986543 3 3 48999999975 4578
Q ss_pred cCEEEEEe
Q 005488 363 FDKLILLG 370 (694)
Q Consensus 363 ~D~i~vL~ 370 (694)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.90 E-value=6.3e-09 Score=104.57 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (694)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|..+. .+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778899999999999996 665533333 345579999999999764 46678887663
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.83 E-value=3.7e-09 Score=131.90 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=67.0
Q ss_pred cCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 005488 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|+|||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5789999999763 57899997
Q ss_pred EEe
Q 005488 368 LLG 370 (694)
Q Consensus 368 vL~ 370 (694)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.83 E-value=2.8e-08 Score=102.25 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=97.1
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 005488 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (694)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (694)
+-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| ..+.|+..+. +..+-
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 346654 56799999999999999999999988852111 1 11 1244555432 23332
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 005488 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (694)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEPTsg-- 325 (694)
+.-...... .. .+.+. .|.-...+.... .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~--~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI--DI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC--Ch---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 222111110 10 01100 011011111000 112356788999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH------HHhccCEEEEEe
Q 005488 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR------LFHKFDKLILLG 370 (694)
Q Consensus 326 -LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~------i~~~~D~i~vL~ 370 (694)
+|......+++.++.+++.|.|+++++|+.... +...+|-++.|+
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 455555566666777677799999999986531 345567777665
No 453
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.76 E-value=4.8e-07 Score=92.97 Aligned_cols=186 Identities=17% Similarity=0.237 Sum_probs=118.2
Q ss_pred HHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC-CCC-ChhhH----HHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhH
Q 005488 499 RGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS-DSK-SPKGL----EDQAGLLFFIAVFWSFFPIFTAIFT-FPQERA 570 (694)
Q Consensus 499 R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~-~~~-~~~~~----~~~~g~lff~~~~~~~~~~~~~i~~-~~~er~ 570 (694)
|+++. .|++.....-+++-++..+++|.++-+. +.+ ...+. .--.|.+.+.....+.. ..... .-.|+.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhC
Confidence 34443 4555433345566667777777766432 110 01121 11123333333222211 11111 113333
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 005488 571 MLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDL 650 (694)
Q Consensus 571 v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~a~~~~~ 650 (694)
++.|=+.. =.++..|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.
T Consensus 78 ~~~~~~~~-P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 78 FLKEILVA-PASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 44443332 23678999999999999999999999999998877554 3455555556667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccC--ccC------CcccHHHHHHHhh
Q 005488 651 KKATTLASVTIMTFMLAGGYFVQV--SKQ------TLHPQSLVYERIV 690 (694)
Q Consensus 651 ~~A~~~~~~~~~~~~lf~Gf~i~~--~~~------~l~p~~~~~e~~~ 690 (694)
+.+..+.+++..+++++||.+.|- .|. +++|+.|+.|++-
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r 202 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGAR 202 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHH
Confidence 999999999999999999999883 243 5778888888754
No 454
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=2.2e-08 Score=122.02 Aligned_cols=78 Identities=32% Similarity=0.456 Sum_probs=67.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHH
Q 005488 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (694)
Q Consensus 293 ~~~LSGGerq------Rv~IA~aL~~~-----P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvi~~~H~~~~~i 359 (694)
+..||||||+ |++|+++++.+ | +++|+||||++||+.....+.+.|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 99999998864 3 67999999999999999999999999976564 8999999975 3
Q ss_pred HhccCEEEEEeCC
Q 005488 360 FHKFDKLILLGKG 372 (694)
Q Consensus 360 ~~~~D~i~vL~~G 372 (694)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5779999999643
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.73 E-value=6.5e-08 Score=99.94 Aligned_cols=136 Identities=21% Similarity=0.384 Sum_probs=82.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-EeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC
Q 005488 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (694)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G-~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (694)
|++..|+||+|+|||||.--++=... .|.=++++ ... .-...+-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 67899999999999999988763221 22211111 110 0122344444322
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 005488 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 324 (694)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~----------------aL~~~P~iLlLDEPTs- 324 (694)
+..+..+++..+...+++.+..+... +.+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233445555555555433222211 2244555554443 335799999999 775
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCC
Q 005488 325 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (694)
Q Consensus 325 -----gLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~ 356 (694)
.+|+.....+++.|++++++ |.|||+++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 899999999864
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.73 E-value=3.6e-08 Score=110.80 Aligned_cols=151 Identities=22% Similarity=0.281 Sum_probs=92.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHH
Q 005488 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (694)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (694)
.++++.+..+..|++++++||||+||||++..|++++. ...|. ++|++|.+|. + ..++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt--~-RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS--Y-RIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc--c-chhHHHHH
Confidence 35667777788999999999999999999999998642 11232 2588999886 2 47899999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 005488 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 324 (694)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq-Rv~IA~aL~~~P-----~iLlLDEPTs 324 (694)
.+.+.... ++........+..+...+|.+....+|. ....+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98766532 1111111222333344566655444332 22222322 234444555555 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEec
Q 005488 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (694)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H 353 (694)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344455555444555555554
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.73 E-value=9e-09 Score=114.09 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 005488 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (694)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~ 224 (694)
+.+|++||+++++||+++|+|||||||||||+ +|.. .++.+|+|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 36899999999999999999999999999999 5544 3454558999999874
No 458
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=1.7e-08 Score=126.21 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 005488 292 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (694)
.+..||||||++++||++|+. +|+++|||||+++||+.+...+.+.|+++++ +.++|++||++. ++..||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356799999999999999985 6799999999999999999999999999865 578999999974 568999998
Q ss_pred EEeC
Q 005488 368 LLGK 371 (694)
Q Consensus 368 vL~~ 371 (694)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72 E-value=4e-07 Score=83.22 Aligned_cols=118 Identities=32% Similarity=0.399 Sum_probs=76.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC
Q 005488 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (694)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (694)
++..+.|+||+|+||||+++.|+..+.... .+-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV-----------------LDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC-----------------HHHHH------------
Confidence 367899999999999999999997654211 134444443221100 00000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 005488 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ----- 336 (694)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~----- 336 (694)
... .........+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 --------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 --------------LII----------VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --------------hhh----------hhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 000 000113577788888888888888899999999999999998877664
Q ss_pred -HHHHHHHCCCEEEEEec
Q 005488 337 -MLQDIAEAGKTVVTTIH 353 (694)
Q Consensus 337 -~L~~l~~~g~Tvi~~~H 353 (694)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22222334778888888
No 460
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.68 E-value=3.3e-06 Score=87.93 Aligned_cols=194 Identities=11% Similarity=0.135 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC-CC------CCh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 005488 491 QQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS-DS------KSP--KGLEDQAGLLFFIAVFWSFFPIFT 560 (694)
Q Consensus 491 ~Q~~~L~~R~~~~-~R~~~~~~~r~~~~~~~aliiG~lf~~~-~~------~~~--~~~~~~~g~lff~~~~~~~~~~~~ 560 (694)
+++..+++|+++. .|++......+++-+++-+++|.+|-.. +. ++. -...--.|++-+...+.++. .
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~---~ 78 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ---S 78 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---h
Confidence 5788999999986 5776655556777777778888877432 10 000 00111223333333222221 1
Q ss_pred HHH-hhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 005488 561 AIF-TFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGL 639 (694)
Q Consensus 561 ~i~-~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl 639 (694)
+.. ....|+..+.+=+...+ +...+.+++++..+-..++..+++.++.++ .|.+.....++.....+++..++..++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 11223334444444444 778899999999988777776665555543 366655444444445556667778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCc-----cCC------cccHHHHHHHh
Q 005488 640 GLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQVS-----KQT------LHPQSLVYERI 689 (694)
Q Consensus 640 g~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~-----~~~------l~p~~~~~e~~ 689 (694)
|.++|+++++.+.+..+.++++.+++..+|.+.|.. |.| ++|+.|.-|++
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELV 217 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHH
Confidence 999999999999888888888889999999887632 433 58888887765
No 461
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.56 E-value=3.4e-07 Score=99.80 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 005488 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (694)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (694)
+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 34569999999998653 4556776554
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.55 E-value=6.1e-07 Score=108.59 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh--ccCEEEEEeCCeEE
Q 005488 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLL 375 (694)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~--~~D~i~vL~~G~iv 375 (694)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++.. +.+ .++.|+-....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999998889999999999864 333 23333333444444
No 463
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.48 E-value=2e-05 Score=82.20 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=113.8
Q ss_pred HHHHHHHHHH-hhc-chhHHHHHHHHHHHHHHHHHHhcCCCCCChhh--HHHHH--HHHHHHHHHHHHHHHHHHH-HhhH
Q 005488 494 TILFRRGIKE-HRH-DYFSWLRITQVLATAVILGLLWWQSDSKSPKG--LEDQA--GLLFFIAVFWSFFPIFTAI-FTFP 566 (694)
Q Consensus 494 ~~L~~R~~~~-~R~-~~~~~~r~~~~~~~aliiG~lf~~~~~~~~~~--~~~~~--g~lff~~~~~~~~~~~~~i-~~~~ 566 (694)
..+.+|+++. +|+ +......+++-++.-+++|..+-.... +..+ ..+.. |.+-+.+++.++ +... ..+.
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~-~~~g~~y~~f~~pg~l~~~~~~~~~---~~~~~~~~~ 83 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVG-SVDGVSYAAFLAAGMVATSAMTAST---FETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3455888875 555 444444566666666777776543211 1111 11111 333222222221 1111 1111
Q ss_pred --hhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005488 567 --QERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG 644 (694)
Q Consensus 567 --~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~ 644 (694)
.|+..++|-+..-. ++..+.++|++.+.-..++..++...+.+++ |..+. ...+..+..+++..++..++|.+++
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444443433 6789999999998777777776655555443 44333 3344444555667777889999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcccccC--ccC------CcccHHHHHHHh
Q 005488 645 AILMDLKKATTLASVTIMTFMLAGGYFVQV--SKQ------TLHPQSLVYERI 689 (694)
Q Consensus 645 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--~~~------~l~p~~~~~e~~ 689 (694)
++.++.+.+..+..+++.|++.+||.+.|. .|. +++|+.|+.|++
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~ 213 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDI 213 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHH
Confidence 999999999889899999999999999883 344 477888888774
No 464
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.46 E-value=5.9e-08 Score=99.34 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005488 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (694)
Q Consensus 172 iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (694)
-|+++ .+-+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 46663 5679999999999999999999988655
No 465
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=2.5e-07 Score=101.55 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 005488 295 GVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~~---------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |.+|++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 599999999999999999 99999999999999999999999999753 679999999864
No 466
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.44 E-value=1.9e-07 Score=103.69 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=67.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ccEEEECCEeCCh----------hccCcEEEEcc
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~--~G~I~~~G~~~~~----------~~~~~i~yV~Q 236 (694)
...+|+++ +.+.+|+.++|+|+||+|||||+++|+|.. .+.. -|.|-.+|.++.+ ..|..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35699999 999999999999999999999999999854 3321 2445555555432 12456899999
Q ss_pred CCcCCCCCCHHHHHHHHHhc
Q 005488 237 DDVLFPHLTVKETLTYAALL 256 (694)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~ 256 (694)
++..+..+++.+++.+.+..
T Consensus 220 d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 220 DESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCChhhhHHHHHHHHHHHHH
Confidence 99999999999999877654
No 467
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.44 E-value=1.6e-06 Score=96.96 Aligned_cols=175 Identities=21% Similarity=0.250 Sum_probs=106.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh------------hccCcEEEEcc
Q 005488 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQ 236 (694)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~------------~~~~~i~yV~Q 236 (694)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|.. . +..|.+...|..-++ .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-E-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35689999 999999999999999999999999999854 3 335666665543321 12233444444
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH-HHHHHHHHHHHHhhCCC
Q 005488 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG-GERKRVCIGNEIIINPS 315 (694)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG-GerqRv~IA~aL~~~P~ 315 (694)
-+. +..+-..-+. .--.+.+.+...|- |..+- ..+|+- =|-+| ++.
T Consensus 227 ~d~-----~p~~r~~~~~------------~a~t~AE~frd~G~----~Vll~---~DslTr~A~A~R-----Eis---- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGAY------------VATAIAEYFRDQGK----DVLLL---MDSVTRFAMAQR-----EIG---- 273 (440)
T ss_pred CCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----CEEEE---EeChHHHHHHHH-----HHH----
Confidence 321 1211111000 00011222222232 22211 111221 01111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 005488 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 316 iLlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (694)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||... ..+|++.-+.+|+++..++..+.
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 345675 459999999999999999876667 88888999754 46899999999999999987664
No 468
>PRK14079 recF recombination protein F; Provisional
Probab=98.43 E-value=3.8e-07 Score=99.66 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCE
Q 005488 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (694)
Q Consensus 295 ~LSGGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~ 365 (694)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888653 24555555543 56999
Q ss_pred EEEEeCCeEEEe
Q 005488 366 LILLGKGSLLYF 377 (694)
Q Consensus 366 i~vL~~G~iv~~ 377 (694)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999987543
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.43 E-value=5.4e-07 Score=89.61 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=61.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhccCcEEEEccCC--cCCCCCCHHH
Q 005488 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (694)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~--~l~~~lTV~E 248 (694)
..+=+.+.+++|+.++|+||||||||||+++|+|.+. +..|.|.+.+..-. ...+..++++.|.+ ...+..++.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4455566789999999999999999999999998653 45799999775321 12234567766654 3466789999
Q ss_pred HHHHHHhcc
Q 005488 249 TLTYAALLR 257 (694)
Q Consensus 249 nl~~~~~~~ 257 (694)
.+..+.+.+
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998876543
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.42 E-value=1.3e-08 Score=115.68 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=98.1
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCcccEEEECCEeCChhcc---CcEEEEccCCcCCCCC
Q 005488 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSLK---SKIGFVTQDDVLFPHL 244 (694)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~--G~l~~~~~~G~I~~~G~~~~~~~~---~~i~yV~Q~~~l~~~l 244 (694)
+-||.+ .+=+.+|..+.|.|++|||||||..-++ |.. ... ...+++....-.++++ +..|+-.++..--.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~-~~g-e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-HFD-EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCC-CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 346665 5689999999999999999999988663 311 111 2335554433222221 23444333211000
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 005488 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (694)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA--~aL~~~P~iLlLDEP 322 (694)
++.+ .. .... .....+++.+++.+..+.. ...+|+|++|||.|+ .+|..+|+..
T Consensus 84 ----~l~~---~~----~~~~---~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LD----ASPD---PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Ee----cCch---hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 00 0000 0001122334443333322 357999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH-------H-HhccCEEEEEe
Q 005488 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (694)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~-------i-~~~~D~i~vL~ 370 (694)
...+..+.+.++.+++.|+|+|+++|+.... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986421 1 34789999987
No 471
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.1e-06 Score=107.48 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=69.0
Q ss_pred cCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc
Q 005488 292 FVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (694)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~------~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~ 363 (694)
.+..|||||+=.++||.+|+ .+ =++|||||||..||+.+...++++|.++...+++|+||||+. ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999888887764 35 599999999999999999999999999988899999999995 467889
Q ss_pred CEEEEEeC
Q 005488 364 DKLILLGK 371 (694)
Q Consensus 364 D~i~vL~~ 371 (694)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998875
No 472
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=1.3e-06 Score=97.41 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.3
Q ss_pred CeeEEEEeEEEEEeecccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC---EeC
Q 005488 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (694)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G---~~~ 223 (694)
+..++.++++..|. ....+++.++ .+.+||.++|+||||||||||+++|++.. . +..|.|.+.| +++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 44689999998873 2357899986 99999999999999999999999999743 3 3468888854 554
Q ss_pred Ch--------hccCcEEEEccCCc
Q 005488 224 SK--------SLKSKIGFVTQDDV 239 (694)
Q Consensus 224 ~~--------~~~~~i~yV~Q~~~ 239 (694)
.. ..++.|++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 31 12467999999764
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.34 E-value=5.4e-07 Score=90.20 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=65.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhc-cCCCCCC
Q 005488 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPNTLT 263 (694)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~~~~~~ 263 (694)
+++|.||||||||||.+.|++.+. +|. +.++++|+.+. .++..+........ ..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc-
Confidence 579999999999999999998541 222 34455554332 23333333221110 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005488 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (694)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (694)
..+...+.+..+...+..+. .....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12233455555544332222 234678888776555 5688999999999999886
No 474
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.32 E-value=1.1e-06 Score=106.25 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=87.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 005488 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (694)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (694)
..|-+|+++. ..+.++.|.|||++||||+||.++-...- ..-| .|||-+..-+ ++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G-----------------~~VPa~~a~i---~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG-----------------SFVPAESARI---GIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC-----------------CceeccceEe---cccCe
Confidence 4577888888 67789999999999999999998732110 0011 2344322111 11111
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CC
Q 005488 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---TS 324 (694)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEP---Ts 324 (694)
| ..++|-. | ....++|-=+.....++..|-. +++++|+||| |+
T Consensus 653 I------------------------~triga~---d-----~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 I------------------------FTRIGAS---D-----DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred e------------------------eeccCcc---c-----ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1 1111211 1 1124677777777777777655 8999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCE
Q 005488 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (694)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~ 365 (694)
.+|..+ .....++.+.+. |.++|++||.. ++.+++|+
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999544 455566666655 58999999993 46677765
No 475
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.27 E-value=1.2e-05 Score=80.99 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005488 582 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTI 661 (694)
Q Consensus 582 ~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~ 661 (694)
+.+.++++|.+..+++.+++.+++..+.||+.|++.. +++.+++++++..++..++|.++++++++...+ +..+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4567899999999999999999999999999999864 466677778888899999999999999876544 344445
Q ss_pred HHHHHHhcccccCc--c------CCcccHHHHHHHhhh
Q 005488 662 MTFMLAGGYFVQVS--K------QTLHPQSLVYERIVQ 691 (694)
Q Consensus 662 ~~~~lf~Gf~i~~~--~------~~l~p~~~~~e~~~~ 691 (694)
.+.++++|.+.|.. | .++.|..|+.|++-.
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~ 171 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQ 171 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHH
Confidence 56677788888742 3 368888999988754
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.21 E-value=8.5e-07 Score=87.57 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=47.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh--cc-CcEEEEccCCcCCCCCCHHHHHHHH
Q 005488 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LK-SKIGFVTQDDVLFPHLTVKETLTYA 253 (694)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~--~~-~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (694)
+||+++|+|+||||||||+++|+|++. -+.++|.++... .+ ...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998652 257888776421 22 2356777775555556666666554
No 477
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.21 E-value=1.7e-06 Score=109.21 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 005488 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (694)
Q Consensus 293 ~~~LSGGerqRv~----IA~a--------L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (694)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++.+.++ |.++|+++|.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5655 45799999999999999999999999999887 78999999873
No 478
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.21 E-value=0.0001 Score=75.78 Aligned_cols=119 Identities=16% Similarity=0.246 Sum_probs=82.7
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005488 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 647 (694)
Q Consensus 568 er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~i~a~~ 647 (694)
|+..+.|=+..-. ++..|+++|++..++..++..+++. +++++.|++.....+ ..++.+.+..+.+.+++.++++++
T Consensus 64 ~~G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666665555 7889999999988888776655554 556777988654333 233334445556677777777776
Q ss_pred C---CHHHHHHHHHHHHHHHHHHhcccccC--ccC------CcccHHHHHHHh
Q 005488 648 M---DLKKATTLASVTIMTFMLAGGYFVQV--SKQ------TLHPQSLVYERI 689 (694)
Q Consensus 648 ~---~~~~A~~~~~~~~~~~~lf~Gf~i~~--~~~------~l~p~~~~~e~~ 689 (694)
+ +.+.+..++++..++++++||++.|. .|. ++.|+.|+.+++
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~ 193 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEAL 193 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHH
Confidence 4 45555778888889999999999984 354 477778888765
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.19 E-value=4e-06 Score=105.08 Aligned_cols=164 Identities=16% Similarity=0.251 Sum_probs=89.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHH
Q 005488 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (694)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (694)
.=+++..+++++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... . .+-.++...+ +...
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~--~~~~~~~~~~-------~~~~- 265 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-E--IYSSANPDDY-------NMKL- 265 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-h--hccccccccc-------chhH-
Confidence 335677888999999999999999999999876643 34788988763221100 0 0000110000 0000
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005488 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (694)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~ 333 (694)
...++.+.++++..++. +..+ ++.|+|+ ..++-+|+||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~L------~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK-----------IYHL-GAMEERL------KHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHHH------hCCeEEEEEeCC----CCH---H
Confidence 01122233333333321 1112 5566663 345567788984 433 3
Q ss_pred HHHHHHHHH---HCCCEEEEEecCCChHHHh-ccCEEEEEeCCeEEEecCHHHHHHHHHhcCC
Q 005488 334 IVQMLQDIA---EAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (694)
Q Consensus 334 i~~~L~~l~---~~g~Tvi~~~H~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~ 392 (694)
.++.|.... ..|.+||+|||+... +.. .+|+++.+. .=+.+++.+.|...-+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~------~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVC------LPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEec------CCCHHHHHHHHHHHhc
Confidence 344444432 348899999999643 222 257766553 1145677777776544
No 480
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.15 E-value=5.8e-05 Score=91.44 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=41.9
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 005488 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (694)
Q Consensus 311 ~~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (694)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999888999999999975
No 481
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.13 E-value=5.8e-05 Score=79.22 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005488 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (694)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (694)
.+.|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578998889999999999999999999999888743
No 482
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.10 E-value=7.6e-05 Score=90.29 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 005488 309 EIIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (694)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (694)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 888999999999998889999999999753
No 483
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=6.6e-06 Score=90.19 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=46.3
Q ss_pred eeEEEEeEEEEEeecccccccccceee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005488 148 IYLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (694)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l 207 (694)
..++|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 129 ~ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3699999999983 2346886 999999999999999999999999999999643
No 484
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.05 E-value=1e-05 Score=90.33 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=69.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC---EeCCh----hcc---CcEEEE-----
Q 005488 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SLK---SKIGFV----- 234 (694)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G---~~~~~----~~~---~~i~yV----- 234 (694)
..+++++ +.+.+||.++|+|+||+|||||+++|+|.... ...|.|.+.| +++.+ .++ .+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4589998 99999999999999999999999999985532 3346777755 44421 121 235555
Q ss_pred ccCCc--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 005488 235 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (694)
Q Consensus 235 ~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (694)
+|++. +.+.+ +...+.-..+.+....+...+...++.+.+++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 23322 333333222222111223455677888889998884
No 485
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.01 E-value=4.2e-05 Score=70.49 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCC
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 356 (694)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvi~~~H~~~ 356 (694)
++..........++.++++||.-.. +......+.+.+..... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445555666778999999998765 56666778888877643 4678888888643
No 486
>PRK15066 inner membrane transport permease; Provisional
Probab=98.01 E-value=0.0012 Score=69.00 Aligned_cols=195 Identities=13% Similarity=0.154 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhhcch-hH-HHHHHHHHHHHHHHHHHhcCC-CC-CChhh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005488 490 IQQYTILFRRGIKEHRHDY-FS-WLRITQVLATAVILGLLWWQS-DS-KSPKG-LEDQAGLLFFIAVFWSFFPIFTAIFT 564 (694)
Q Consensus 490 ~~Q~~~L~~R~~~~~R~~~-~~-~~r~~~~~~~aliiG~lf~~~-~~-~~~~~-~~~~~g~lff~~~~~~~~~~~~~i~~ 564 (694)
|+-+..+.+|+++..+++. .. .--+++.++..+++|.++-.. +. ++..- ..--.|.+-+.....+... ....
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~---~~~~ 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSN---VASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 5567788899988643332 11 122344445556666554221 11 01000 1111233333332222211 1122
Q ss_pred hHhhh--HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 005488 565 FPQER--AMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLA 642 (694)
Q Consensus 565 ~~~er--~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~iif~~ivY~m~Gl~~~~~~f~~f~l~~~l~~~~~~slg~~ 642 (694)
+..+| ..++|=+... -+...+.+++++...-..++..++..++.+...|.+... ...++..+++..++....|.+
T Consensus 84 i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 84 FFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 22333 1122212223 377889999999887666666666555555544665432 223333333333434445888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcccccC--ccC------CcccHHHHHHHhh
Q 005488 643 IGAILMDLKKATTLASVTIMTFMLAGGYFVQV--SKQ------TLHPQSLVYERIV 690 (694)
Q Consensus 643 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~--~~~------~l~p~~~~~e~~~ 690 (694)
++.+.++.+.+..+.++++.+++..+|.+.|. .|. +++|+.|+.|++=
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R 216 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFR 216 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHH
Confidence 88888898888888898899999999988873 233 4788899887653
No 487
>PRK01889 GTPase RsgA; Reviewed
Probab=97.99 E-value=6.4e-06 Score=90.26 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=70.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhccCcEEEEccCCcCCCCCCHHHHH
Q 005488 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETL 250 (694)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (694)
-++.+.-.+++|++++|+|+||+|||||+|.|+|... ...|+|.+++.... ...++.+.+++|+..++++ ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555666678999999999999999999999998654 45799999875432 2335679999999888864 556665
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005488 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286 (694)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t 286 (694)
.+.... .. .........++.+.+...+|.+.
T Consensus 261 ~l~~~~---~~--l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 261 QLWDAE---DG--VEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred cccCch---hh--HHHhHHHHHHHHccCCCCCCCCC
Confidence 543110 00 11112234445555556666654
No 488
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.98 E-value=8.6e-06 Score=66.16 Aligned_cols=36 Identities=42% Similarity=0.734 Sum_probs=28.7
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 005488 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRLM 208 (694)
Q Consensus 173 L~~vs~~i~~-Ge~~aIvGpsGsGKSTLl~~L~G~l~ 208 (694)
+++.++++.+ |+++.|.||||||||||+++|.=.++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4456677776 56999999999999999999974443
No 489
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.95 E-value=0.00022 Score=78.67 Aligned_cols=160 Identities=19% Similarity=0.271 Sum_probs=99.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccC
Q 005488 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (694)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (694)
-|++| +++|+|.+=-||||||++|.--.++. .-| ||+..-- -......+--+|- -.
T Consensus 241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VV-T~~~avkirAEDG----R~------------- 296 (448)
T PF09818_consen 241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVV-TDPDAVKIRAEDG----RS------------- 296 (448)
T ss_pred eeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEE-ECCCceEEEecCC----ce-------------
Confidence 58888 99999999999999999997545432 123 3332100 0000001111110 00
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHHH
Q 005488 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTTALR 333 (694)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgL-----D~~~~~~ 333 (694)
+.. ..+--+++ +|+...||. .-...+=||-.-|=.+|..||=...++||+||=||+- |...+..
T Consensus 297 ---V~~----vDISpFI~--~LP~g~dT~--~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~L 365 (448)
T PF09818_consen 297 ---VEG----VDISPFIN--NLPGGKDTT--CFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQAL 365 (448)
T ss_pred ---EeC----ccchHHHh--hCCCCCCCC--cccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHh
Confidence 000 00112333 235555553 1122468999999999999999999999999999974 4444444
Q ss_pred H----------HHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 005488 334 I----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (694)
Q Consensus 334 i----------~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (694)
+ ++.++.+. +.|.+.|+++-- +.+.+..+|+|++|++=+.
T Consensus 366 v~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 366 VSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 3 55667774 358877777755 4568899999999987553
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.94 E-value=5.8e-06 Score=83.00 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=42.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccC
Q 005488 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (694)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~ 237 (694)
++|++++|+|+||||||||.+.|++++.. ...|.+.++|.++.+.+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 57899999999999999999999986642 225789999988764444445565554
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.93 E-value=1.1e-05 Score=83.02 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=48.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccE----EEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhc
Q 005488 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (694)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~----I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (694)
.+..+++|.||||||||||.+.|++.+. ..+|. |.+|+.......+...+++++.+. +...++.+.+.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHHHH
Confidence 4467999999999999999999998764 33676 555654444333445677766433 3455666666554433
No 492
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.93 E-value=9.9e-05 Score=73.01 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 005488 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (694)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~--IA~aL~~-~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (694)
.+.+.++..+++- -.+++ ....+++||+|++. +.+.+-. +++++ |+|++|.....++.+.|.++.+.
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445566555531 12222 34568999999987 5555543 34443 99999999999999999987654
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.90 E-value=3.9e-05 Score=86.64 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.5
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCCEEEEEecCCCh-------HHHhccCEEEEEeCCe
Q 005488 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (694)
Q Consensus 312 ~~P~iLlLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~-------~i~~~~D~i~vL~~G~ 373 (694)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|.... .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2234455666777754 59999999996432 1456789999998654
No 494
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.90 E-value=1.5e-05 Score=75.77 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005488 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (694)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL-----~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 341 (694)
++.+.+...+.+- ..+.+ +...++++++++....... ...|+++ |+|++|.....++.+.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 4455666655331 12222 2345789988887666553 2345555 99999999999999888764
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.90 E-value=1.2e-05 Score=79.90 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=30.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 005488 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (694)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~~G~~~~ 224 (694)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998542 25777777654
No 496
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.90 E-value=2.4e-05 Score=68.66 Aligned_cols=48 Identities=33% Similarity=0.538 Sum_probs=36.7
Q ss_pred CCCCCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005488 293 VRGVSGGERK-RVCIGNEI------II------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (694)
Q Consensus 293 ~~~LSGGerq-Rv~IA~aL------~~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 340 (694)
..++|||||| .+.++.++ -. .|++++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4679999994 44444332 22 3799999999999999999999999874
No 497
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.88 E-value=5.6e-06 Score=83.68 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005488 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (694)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~l 207 (694)
++|++++|+||||||||||++.|++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999854
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.86 E-value=7.6e-05 Score=81.81 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=31.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeC
Q 005488 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY 223 (694)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~~~G~~~ 223 (694)
++|.+++|.||+||||||+|++|++.+.. ++..+.|.....|+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 58999999999999999999999975532 22233554444443
No 499
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.85 E-value=1.4e-05 Score=85.01 Aligned_cols=72 Identities=10% Similarity=0.152 Sum_probs=47.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE---CCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhc
Q 005488 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (694)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~l~~~~~~G~I~~---~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (694)
.++||.||||||||||.++|.+.+...+.+|.|.+ ||.-.....++..++. |+..+.+.+++.+.+.+-..+
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 69999999999999999999986542233577655 4433333333345543 555566677777777765544
No 500
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.83 E-value=2.2e-05 Score=78.03 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh-HHHhccCEEEEEeCC
Q 005488 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKG 372 (694)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~-~i~~~~D~i~vL~~G 372 (694)
|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..+.|.+||+.+|.+.. .+...||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988777 7899999999999998876557899999998732 255689999887643
Done!