Query 005488
Match_columns 694
No_of_seqs 329 out of 3442
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:39:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005488.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1994-1998//hhsearch_pdb/005488hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 441.1 4.7 356 8-385 261-641 (1321)
2 4f4c_A Multidrug resistance pr 1.0 1 1 437.2 24.0 355 10-385 923-1304(1321)
3 3g5u_A MCG1178, multidrug resi 1.0 1 1 413.5 15.2 356 8-385 233-613 (1284)
4 3qf4_A ABC transporter, ATP-bi 1.0 1 1 407.6 6.4 353 9-385 189-566 (587)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 403.6 10.4 356 9-385 203-578 (598)
6 4a82_A Cystic fibrosis transme 1.0 1 1 403.3 9.3 353 9-385 187-564 (578)
7 3b60_A Lipid A export ATP-bind 1.0 1 1 397.3 8.9 350 9-385 191-567 (582)
8 3b5x_A Lipid A export ATP-bind 1.0 1 1 396.4 14.0 350 9-385 191-567 (582)
9 2yl4_A ATP-binding cassette SU 1.0 1 1 395.6 9.0 355 9-385 188-570 (595)
10 3g5u_A MCG1178, multidrug resi 1.0 1 1 391.8 11.4 355 10-385 878-1258(1284)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=441.05 Aligned_cols=356 Identities=22% Similarity=0.279 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCH
Q ss_conf 47678879999999999730988545424457887310012445543148986777776610422133322100100010
Q 005488 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (694)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (694)
.+..++.++..++..+.++|..++.+++|+++.+..+.+++.+........+.+.....+...........-..+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1321)
T 4f4c_A 261 STFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYI 340 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998399999821429999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC----CHH------------HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 13777633443422100136778----810------------00148998889983000026678998889999870099
Q 005488 88 GAALSRASSASLGLSFSFTGFTM----PPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (694)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (694)
|+.++..+..+.|.++++..+.. |.. ..+..+.+...+.++.++....... ........|+
T Consensus 341 g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~---~~~~~~g~I~ 417 (1321)
T 4f4c_A 341 GVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGR---KDMKIKGDIT 417 (1321)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCC---CCCCCCCCEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCCEE
T ss_conf 9999995998699999999999999999998999999999999999999999717853456665565---6778887679
Q ss_pred EEEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999522566644464012127999488199998799874999999997299999964089998870792----10
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~ 227 (694)
|+||+|+|+ .++++++|+|+|+++++|+.+||+||||||||||+++|.| +++| .+|+|.+||.|+.+ .+
T Consensus 418 ~~nvsF~Y~-----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~-~~~~-~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 418 VENVHFTYP-----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR-YYDV-LKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp EEEEEECCS-----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT-SSCC-SEEEEEETTEETTTSCHHHH
T ss_pred EEEEEEECC-----CCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCC-CCCC-CCCCCCCCCCCCHHCCHHHH
T ss_conf 998554079-----9998743333188622882789980589857788887545-6516-44861579965011259998
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 273899913886799999999999987506999877999999-----999999992998432332358667777978989
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (694)
|++++||+|++.+|+. ||+|||.|+.. ..++++..+ .+++.++. |+++.||.+|+.+. .|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~~v~~a~~~a~l~~~i~~--lp~G~~T~vGe~G~-~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE-----GITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRGT-QLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHHHHHHHHHHTTCHHHHHH--STTTTSSEESSSSC-CCCHHHHH
T ss_pred HHCCCCCCCCCEEECC-CHHHHHHHHCC-----CCHHHHHHHHHHHCCCHHHHHC--CCCCCCCEECCCCC-CCCHHHHH
T ss_conf 5046665875332078-61678864155-----2209999999987565468870--88888607558988-77777879
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999639978999399999999999999999999997897799993678907885067799980985999509778
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 RvaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~e 382 (694)
|++||||++++|+|++||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. ...+|+|++|++|++++.|+|+|
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCHHH--HHHCCEEEEEECCEEECCCCHHH
T ss_conf 99999987259998998455446887899999999999847-9889997363878--98689899963996513689999
Q ss_pred HHH
Q ss_conf 999
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 639 L~~ 641 (1321)
T 4f4c_A 639 LMA 641 (1321)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 998
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=437.23 Aligned_cols=355 Identities=23% Similarity=0.312 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
Q ss_conf 67887999999999973098854542445788731001244554314898677777661042213332210010001013
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
...+.++..+.....+.|+....+|+|+++.+....+++.+.+........+.....+...........-+....++.|.
T Consensus 923 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 1002 (1321)
T 4f4c_A 923 KNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGL 1002 (1321)
T ss_dssp CSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888988999999627988861414889999999999999999999999999999999999999999998757
Q ss_pred HHHHHHHHHHHHH------HCCCCCCCCHHHH------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 7776334434221------0013677881000------------148998889983000026678998889999870099
Q 005488 90 ALSRASSASLGLS------FSFTGFTMPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (694)
Q Consensus 90 ~~~~~~~~~~g~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (694)
.++..+..+.+.. ..+.....+...+ +..+.+...+.+++++.... . ...+.....|+
T Consensus 1003 ~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~-~~~~~~~g~I~ 1078 (1321)
T 4f4c_A 1003 ALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL---A-GEKKKLYGKVI 1078 (1321)
T ss_dssp HTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC---C-SBCCCCCCCEE
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---C-CCCCCCCCEEE
T ss_conf 8875376542147899999999877889999999999999999999989998607665777667---7-87888888189
Q ss_pred EEEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999522566644464012127999488199998799874999999997299999964089998870792----10
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~ 227 (694)
|+||+|+|+ .+++.++|+|+|++|+|||.+||+||||||||||+++|. |+++|. +|+|.+||.|+.+ .+
T Consensus 1079 f~nVsf~Y~-----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl~~p~-~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1079 FKNVRFAYP-----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE-RFYDTL-GGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp EEEEEECCT-----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT-TSSCCS-SSEEEETTEETTTBCHHHH
T ss_pred EEEEEEECC-----CCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCC-CCEEEECCEEHHHCCHHHH
T ss_conf 998798579-----999882124516998898999998999981999999995-686389-9789999998654999999
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 273899913886799999999999987506999877999999-----999999992998432332358667777978989
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (694)
|++++||+||+.+|+. |++|||.|+.. |.+.++++..+ .+++++. .|+++.||.+|+.+ ..|||||||
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~ei~~Al~~a~l~~~I~--~Lp~GldT~vge~G-~~LSgGQrQ 1224 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIA--ELPEGFETRVGDRG-TQLSGGQKQ 1224 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHHHHHHHHHTTCHHHHH--TSTTTTCSEETTTS-CSSCHHHHH
T ss_pred HHHEEEECCCCEEECC-CHHHHHHCCCC---CCCCCHHHHHHHHHHHCCHHHHH--CCCCCCCCEECCCC-CCCCHHHHH
T ss_conf 8545998789973272-39999745499---99999999999999829849997--17678999823889-156999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999639978999399999999999999999999997897799993678907885067799980985999509778
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 RvaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~e 382 (694)
|++|||||+++|+||+||||||+||+.++..|.+.|++.. +++|+|+++||+++ ...+|+|++|++|+++++|+|+|
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999999971799899968111578999999999999973-99989996068999--99699999998989999888899
Q ss_pred HHH
Q ss_conf 999
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 1302 Ll~ 1304 (1321)
T 4f4c_A 1302 LMS 1304 (1321)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 984
No 3
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=413.52 Aligned_cols=356 Identities=24% Similarity=0.309 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCH
Q ss_conf 47678879999999999730988545424457887310012445543148986777776610422133322100100010
Q 005488 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (694)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (694)
.+..++.++..++..+.++|+....+|+|+|+.+..+.+++.+........+.+.....+..............+..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1284)
T 3g5u_A 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999997879999846539999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC----CCH------------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 1377763344342210013677----881------------000148998889983000026678998889999870099
Q 005488 88 GAALSRASSASLGLSFSFTGFT----MPP------------DEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (694)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (694)
|+.++..+..+.|.+..+..+. .+. ...+..+.+...+.++.++....... ..+.....|+
T Consensus 313 g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~---~~~~~~g~i~ 389 (1284)
T 3g5u_A 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH---KPDNIQGNLE 389 (1284)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCC---CCTTCCCCEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCEEE
T ss_conf 9999992998899999999999999999999999999999999999999999728986776665677---7777777189
Q ss_pred EEEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999522566644464012127999488199998799874999999997299999964089998870792----10
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~ 227 (694)
++||+|+|. .+.++++|+|+|+++++||++||+||||||||||+++|.| +++| .+|+|.+||.++.. .+
T Consensus 390 ~~~v~~~y~-----~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g-~~~~-~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 390 FKNIHFSYP-----SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR-LYDP-LDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp EEEEEECCS-----STTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT-SSCC-SEEEEEETTEEGGGSCHHHH
T ss_pred EEEEEEECC-----CCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCEEEEECCEEHHHCCHHHH
T ss_conf 999899769-----9998710125458975998899989999979999999807-8899-97389999998775799999
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 273899913886799999999999987506999877999999-----999999992998432332358667777978989
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (694)
+++++||+|++.+|+. ||+||+.++... .+.++..+ .+++.++. ++++.||.+|+.. ..|||||||
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~g-~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGERG-AQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSSSS-CSSCHHHHH
T ss_pred HHHEEEECCCCCCCCC-CHHHHHHCCCCC-----CCHHHHHHHHHHHCCHHHHHH--CCCCCCCCCCCCC-CCCCHHHHH
T ss_conf 8654898688753776-699997457989-----999999999998296999974--6563345014787-865999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999639978999399999999999999999999997897799993678907885067799980985999509778
Q 005488 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (694)
Q Consensus 303 RvaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~e 382 (694)
|++|||||+.+|+||+||||||+||+.++..+.+.++++. +|+|+|+++|+++. ...+|+|++|++|++++.|+|++
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--i~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST--VRNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH--HTTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCHHH
T ss_conf 9999999952999899979877779999999999999973-99989999407789--97499899998999999788999
Q ss_pred HHH
Q ss_conf 999
Q 005488 383 AMA 385 (694)
Q Consensus 383 ~~~ 385 (694)
+++
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 986
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=407.63 Aligned_cols=353 Identities=22% Similarity=0.287 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333221001000101
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+..++.+++..+..+...|.....+++|+++.+..+.+++.+..........+.....+...........-..+.-++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g 268 (587)
T 3qf4_A 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999855999998621499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC----CHHH------------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 3777633443422100136778----8100------------01489988899830000266789988899998700999
Q 005488 89 AALSRASSASLGLSFSFTGFTM----PPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..+..+.|.++++..+.. |... .+..+.....+.++..+... .....+.....+++
T Consensus 269 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~~i~~ 344 (587)
T 3qf4_A 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD----NALALPNVEGSVSF 344 (587)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT----TCBCCSCCCCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCEEE
T ss_conf 99998499389999999999999999999999999999999999999999976897657887----76566888880799
Q ss_pred EEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999522566644464012127999488199998799874999999997299999964089998870792----102
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+|++|+|. ..++++|+|+|+++++||+++|+||||||||||+++|+| +++| .+|+|.+||.++.+ .++
T Consensus 345 ~~v~~~y~------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g-~~~~-~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 345 ENVEFRYF------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR-LIDP-ERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp EEEEECSS------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT-SSCC-SEEEEEESSSBGGGBCHHHHH
T ss_pred EEEEEECC------CCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCCEEEECCEECCCCCHHHHH
T ss_conf 78899848------999764211179986998899989999979999999927-8669-986798999983407899998
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 73899913886799999999999987506999877999999-----9999999929984323323586677779789899
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (694)
++++||+|++.+|+. ||+||+.++... .++++..+ .+++.++ .++++.++.+++. ...||||||||
T Consensus 417 ~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~~-~~~LSgGqrQr 487 (587)
T 3qf4_A 417 GHISAVPQETVLFSG-TIKENLKWGRED-----ATDDEIVEAAKIAQIHDFII--SLPEGYDSRVERG-GRNFSGGQKQR 487 (587)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHTTTCSS-----CCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECSS-SCSSCHHHHHH
T ss_pred HHEEEECCCCCCCCC-CHHHHHHCCCCC-----CCHHHHHHHHHHHCCHHHHH--HCCCCHHHHHCCC-CCCCCHHHHHH
T ss_conf 413897789867675-599998524889-----99999999999968499997--5653121275189-89929999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999996399789993999999999999999999999978977999936789078850677999809859995097789
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 vaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~e~ 383 (694)
++|||||+.+|++++|||||++||+.++..+.+.++++. +|+|+|+++|+++. ...+|+|++|++|++++.|+++|+
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHHHH
T ss_conf 999999972999999979754479999999999999867-99989998227688--981998999989989997889999
Q ss_pred HH
Q ss_conf 99
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
++
T Consensus 565 ~~ 566 (587)
T 3qf4_A 565 LE 566 (587)
T ss_dssp HH
T ss_pred HH
T ss_conf 86
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=403.64 Aligned_cols=356 Identities=23% Similarity=0.273 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333221001000101
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+..+..+++.....+...|...+.+++|+++.+....+++.+..........+.....+..............+.-++.|
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (598)
T 3qf4_B 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFG 282 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999737999997487099999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHH----HH------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 3777633443422100136778810----00------------1489988899830000266789988899998700999
Q 005488 89 AALSRASSASLGLSFSFTGFTMPPD----EI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..+..+.|.++.+..+..... .+ +..+.....+.+++.+... ....+.....|++
T Consensus 283 ~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-----~~~~~~~~~~i~~ 357 (598)
T 3qf4_B 283 GWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD-----AVELREVRGEIEF 357 (598)
T ss_dssp HHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS-----CCCCCSCCCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCCCEEEE
T ss_conf 99998599789999999999999999999999999999999999999999976887777777-----7777777771899
Q ss_pred EEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999522566644464012127999488199998799874999999997299999964089998870792----102
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+|++|+|. +++++|+|+|+++++||+++|+||||||||||+++|+| +++| .+|+|.+||.++.+ .++
T Consensus 358 ~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g-~~~p-~~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 358 KNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR-FYDV-DRGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp EEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTT-SSCC-SEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC-------CCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCEEEEECCEEHHHCCHHHHH
T ss_conf 99899779-------99860122279986998899989999969999999945-8579-980899999983018899998
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73899913886799999999999987506999877999999999999992998432332358667777978989999999
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvaIA~ 308 (694)
++++||+|++.+|+. ||+||+.++......+.+.+..+....++.++ .++++.++.+|+. ...||||||||++|||
T Consensus 429 ~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~~~~~-g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 429 SSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIK--HLPEGYETVLTDN-GEDLSQGQRQLLAITR 504 (598)
T ss_dssp HHEEEECTTCCCCSS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHH--TSTTGGGCBCHHH-HTTSCHHHHHHHHHHH
T ss_pred HCEEEEECCCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH--HCCCCCCCHHCCC-CCCCCHHHHHHHHHHH
T ss_conf 410899079823246-39999744799999999999999969788897--4645323642278-8987999999999999
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99639978999399999999999999999999997897799993678907885067799980985999509778999
Q 005488 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (694)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~e~~~ 385 (694)
|++.+|++++|||||++||+.++..+.+.++++. +|+|+|+++|+++. ...+|+|++|++|++++.|+++|+++
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9964999999989766799999999999999980-89989999427789--97199899998999998778999986
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=403.34 Aligned_cols=353 Identities=25% Similarity=0.335 Sum_probs=248.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333221001000101
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+..+..++...+..+...|.....+++|+++.+..+.+++.+..........+.....+...........-..+.-++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 266 (578)
T 4a82_A 187 KLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVG 266 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999824999998166499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCC----CCHHHHC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 377763344342210013677----8810001------------489988899830000266789988899998700999
Q 005488 89 AALSRASSASLGLSFSFTGFT----MPPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..+..+.|.++.+..+. .|...+. ..+.+...+.+++.+.... ....+.....+++
T Consensus 267 ~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~----~~~~~~~~~~i~~ 342 (578)
T 4a82_A 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG----AQPIEIKQGRIDI 342 (578)
T ss_dssp HHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTT----CCCCCCCSCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCEEEE
T ss_conf 999985995899999999999999999999999999999999999999999768976667877----6666777880799
Q ss_pred EEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999522566644464012127999488199998799874999999997299999964089998870792----102
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+|++|+|. ..++++|+|+|+++++||+++|+||||||||||+++|+| +++| .+|+|.+||.++.+ .++
T Consensus 343 ~~v~~~y~------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g-~~~p-~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 343 DHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR-FYDV-TSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp EEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT-SSCC-SEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC------CCCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC-CCCEEEECCEEHHHCCHHHHH
T ss_conf 99999758------999741343379987999999989999859999999846-7889-996799999984427899996
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 738999138867999999999999875069998779999999-----999999929984323323586677779789899
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (694)
++++||+|++.+|+. ||+||+.++... .++++..+. .++.++ .++++.+|.+|+. ...||||||||
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~lp~g~~t~~~~~-g~~LSgGq~Qr 485 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRPT-----ATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGER-GVKLSGGQKQR 485 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCHHHHHHHHHHTTCHHHHH--TSTTGGGCBCCGG-GTTSCHHHHHH
T ss_pred HHEEEEECCCCCCCC-CHHHHHHCCCCC-----CCHHHHHHHHHHHCCHHHHH--HCCCHHHHHHCCC-CCCCCHHHHHH
T ss_conf 006899289834764-599998527999-----88999999998809599997--5733010253068-89679999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999996399789993999999999999999999999978977999936789078850677999809859995097789
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 vaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~e~ 383 (694)
++||||++.+|++++|||||++||+.++..+.+.++++.+ ++|+|+++|+++. ...+|+|++|++|++++.|+++|+
T Consensus 486 v~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~--~~~~d~i~~l~~G~i~~~g~~~el 562 (578)
T 4a82_A 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHREL 562 (578)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--TTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCHHHH
T ss_conf 9999999749999999786545799999999999999808-9979998317899--971998999989989998889999
Q ss_pred HH
Q ss_conf 99
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
++
T Consensus 563 ~~ 564 (578)
T 4a82_A 563 IA 564 (578)
T ss_dssp HH
T ss_pred HH
T ss_conf 85
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=397.32 Aligned_cols=350 Identities=21% Similarity=0.279 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333221001000101
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+..+..++...+..+...|...+.+++|+++.+....+++.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999961999998376899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC----CHHHH------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 3777633443422100136778----81000------------1489988899830000266789988899998700999
Q 005488 89 AALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..+..+.|.+..+..+.. |...+ +..+.....+.+++.+.. + ...+.....+++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~----~--~~~~~~~~~i~~ 344 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG----K--RVIDRATGDLEF 344 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC----C--BCCSCCCCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----C--CCCCCCCCCEEE
T ss_conf 9999849998999999999999999999999999999999999999999997599876677----7--777788884799
Q ss_pred EEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999522566644464012127999488199998799874999999997299999964089998870792----102
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+|++|+|. ..++++|+|+|+++++||+++|+||||||||||+++|+| +++| .+|+|.+||.++.+ .++
T Consensus 345 ~~v~~~y~------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g-~~~p-~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 345 RNVTFTYP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR-FYDI-DEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp EEEEECSS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT-TTCC-SEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEECC------CCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH-CCCC-CCCEEEECCEECCCCCHHHHH
T ss_conf 98899739------999744156159976999899989999989999999861-0689-897697999982306999999
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 738999138867999999999999875069998779999999999999929-------9843233235866777797898
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (694)
++++||+|++.+|+. ||+||+.++.. + ..+++ ++++.++..+ ++++.++.+|+. ...||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~~----~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~ 486 (582)
T 3b60_A 417 NQVALVSQNVHLFND-TVANNIAYART---E-EYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQR 486 (582)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHH
T ss_pred HHCEEECCCCCCCCC-CHHHHHHCCCC---C-CCCHH----HHHHHHHHCCCHHHHHHCCCCCCCCCCCC-CCCCCHHHH
T ss_conf 608088068747787-89999854599---9-98999----99999998497999984504114511479-887899999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHH
Q ss_conf 99999999963997899939999999999999999999999789779999367890788506779998098599950977
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRvaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~ 381 (694)
||++|||+++.+|++++|||||++||+.++..+.+.++++.+ |+|+|+++|+++. ...+|+|++|++|++++.|+++
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHH
T ss_conf 999999999728998999786555798999999999999967-9979999454778--9859989999788898845899
Q ss_pred HHHH
Q ss_conf 8999
Q 005488 382 EAMA 385 (694)
Q Consensus 382 e~~~ 385 (694)
++++
T Consensus 564 ~l~~ 567 (582)
T 3b60_A 564 ELLA 567 (582)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9987
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=396.40 Aligned_cols=350 Identities=21% Similarity=0.294 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333221001000101
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+..+..++...+..+...|...+.+++|+++.+....+++.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999951999997087599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC----CHHHH------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 3777633443422100136778----81000------------1489988899830000266789988899998700999
Q 005488 89 AALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
+.++..+..+.|.+..+..+.. |...+ +..+.....+.+++.+.. +. ..+.....+++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~----~~--~~~~~~~~i~~ 344 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG----KY--EAERVNGEVDV 344 (582)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CC--CCCCCCCEEEE
T ss_conf 9999859988999999999999999999999999999999999999999997589767777----77--77778882899
Q ss_pred EEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999522566644464012127999488199998799874999999997299999964089998870792----102
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+|++|+|. ..++++|+|+|+++++||+++|+||||||||||+++|+| +++| .+|+|.+||.++.+ .++
T Consensus 345 ~~v~~~y~------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g-~~~p-~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 345 KDVTFTYQ------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR-FYDV-DSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred EEEEEECC------CCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCCEEEECCEEHHHCCHHHHH
T ss_conf 99899728------998654004169987999899989999979999999965-7789-998798999985638899996
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 738999138867999999999999875069998779999999999999929-------9843233235866777797898
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (694)
++++||+|++.+|+. ||+||+.++.. + ..+++ ++++.++..+ ++++.||.+|+. ...||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~~----~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~ 486 (582)
T 3b5x_A 417 RHFALVSQNVHLFND-TIANNIAYAAE---G-EYTRE----QIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQR 486 (582)
T ss_pred CCEEEECCCCCCCCC-CHHHHHHCCCC---C-CCCHH----HHHHHHHHCCCHHHHHHCCCCCCCHHCCC-CCCCCHHHH
T ss_conf 485898279905310-29999856688---9-99999----99999998798999984765334510688-884799999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHH
Q ss_conf 99999999963997899939999999999999999999999789779999367890788506779998098599950977
Q 005488 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (694)
Q Consensus 302 qRvaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~ 381 (694)
||++|||+|+.+|++++|||||++||+.++..+.+.++++.+ |+|+|+++|+++. ...+|+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHH
T ss_conf 999999999749999999785446899999999999999728-9989999368899--9819989999899899977899
Q ss_pred HHHH
Q ss_conf 8999
Q 005488 382 EAMA 385 (694)
Q Consensus 382 e~~~ 385 (694)
++++
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHH
T ss_conf 9984
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=395.57 Aligned_cols=355 Identities=24% Similarity=0.344 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333221001000101
Q 005488 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (694)
+..+..++...+..+...|...+.+++|+++.+..+.+++.+..........+.....+...........-..+.-++.|
T Consensus 188 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 267 (595)
T 2yl4_A 188 KLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKG 267 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999811999998375699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC----CHHHH------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-EE
Q ss_conf 3777633443422100136778----81000------------1489988899830000266789988899998700-99
Q 005488 89 AALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIY-LK 151 (694)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 151 (694)
+.++..+..+.|.+..+..+.. |...+ +..+.+...+.+++.+.... . ...+..... |+
T Consensus 268 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~-~~~~~~~~~~i~ 343 (595)
T 2yl4_A 268 GLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEG---V-ILNEKSFQGALE 343 (595)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCS---B-CCCTTTCCCCEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---C-CCCCCCCCCEEE
T ss_conf 999986997899999999999999999999999999999999999999999838976677778---7-777678998389
Q ss_pred EEEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999522566644464012127999488199998799874999999997299999964089998870792----10
Q 005488 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (694)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~ 227 (694)
++|++|+|.. +.++++|+|+|+++++||+++|+||||||||||+++|+| +++| .+|+|.+||.++.+ .+
T Consensus 344 ~~~v~~~y~~-----~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g-~~~p-~~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 344 FKNVHFAYPA-----RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR-LYDP-ASGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEECSS-----CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTT-SSCC-SEEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEECC-----CCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCCEEEECCEEHHHCCHHHH
T ss_conf 9988998589-----988812011279984998899989999979999999825-8578-98379999998111799999
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2738999138867999999999999875069998779999999999999929-------984323323586677779789
Q 005488 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGE 300 (694)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGq 300 (694)
+++++||+|++.+|+. ||+||+.++.... ...++ +++++.++..+ ++++.|+.+|+. ...|||||
T Consensus 417 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~~~LSgGq 488 (595)
T 2yl4_A 417 RSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGEK-GVLLSGGQ 488 (595)
T ss_dssp HHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-SCCCCHHH
T ss_pred HHCEEEECCCCCCCCC-CHHHHHHHCCCCC--CCCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCC-CCCCCHHH
T ss_conf 7322898368832687-7999984058776--65689----999999998697999974732013501688-78689999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 89999999996399789993999999999999999999999978977999936789078850677999809859995097
Q 005488 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (694)
Q Consensus 301 rqRvaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~ 380 (694)
|||++|||+|+.+|++++|||||++||+.++..+.+.++++.+ ++|+|+++|+++. ...+|+|++|++|++++.|++
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST--IKNANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH--HHHSSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCH
T ss_conf 9999999999759999999886668998999999999999965-9979999468789--975998999989989997889
Q ss_pred HHHHH
Q ss_conf 78999
Q 005488 381 SEAMA 385 (694)
Q Consensus 381 ~e~~~ 385 (694)
+++++
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHH
T ss_conf 99974
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=391.83 Aligned_cols=355 Identities=20% Similarity=0.306 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
Q ss_conf 67887999999999973098854542445788731001244554314898677777661042213332210010001013
Q 005488 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (694)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (694)
..++.++++......+.|.....+|+++++.+....+++.+.+........+.+...+.....+.....-..+..++.|+
T Consensus 878 ~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 957 (1284)
T 3g5u_A 878 QALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGA 957 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999889999984659999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-----------------HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 777633-----------------443422100136778810001489988899830000266789988899998700999
Q 005488 90 ALSRAS-----------------SASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (694)
Q Consensus 90 ~~~~~~-----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (694)
.++..+ ....+.+.++.. .......+..+.+...+.++..+..... ....+.....+++
T Consensus 958 ~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~~g~i~~ 1033 (1284)
T 3g5u_A 958 YLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP-DYAKATVSASHIIRIIEKTPEIDSYSTQ---GLKPNMLEGNVQF 1033 (1284)
T ss_dssp CCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSC-CSTHHHHHHHHHHHHHHSCCSSSSCCSS---CCCTTTTSCCEEE
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCEEE
T ss_conf 99990980699999999999999999999999999-9999999999999998388766665556---6545677785799
Q ss_pred EEEEEEEEECCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999522566644464012127999488199998799874999999997299999964089998870792----102
Q 005488 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (694)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~Grl~~~~~~G~I~~~G~~~~~----~~~ 228 (694)
+||+|+|. .+.++++|+|+|+++++||++||+||||||||||+++|.| +++| .+|+|.+||.++.. .++
T Consensus 1034 ~~v~~~y~-----~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g-~~~p-~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1034 SGVVFNYP-----TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER-FYDP-MAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp EEEEBCCS-----CGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT-SSCC-SEEEEESSSSCTTSSCHHHHT
T ss_pred EEEEEECC-----CCCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCCEEEECCEECCCCCHHHHH
T ss_conf 99899779-----9998700203059976998899988999978999999946-8678-997798999980007899997
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 738999138867999999999999875069998779999999-----999999929984323323586677779789899
Q 005488 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (694)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~f~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (694)
++++||+||+.+|+ .||+||+.++...+ ..+.++..+. +++.++ .++++.||.+|+. ...||||||||
T Consensus 1107 ~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~-G~~LSgGq~Qr 1179 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDK-GTQLSGGQKQR 1179 (1284)
T ss_dssp TSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTT-SCSSCHHHHHH
T ss_pred HCEEEECCCCCCCC-CCHHHHHHCCCCCC---CCCHHHHHHHHHHHCCHHHHH--HCCCCCCCCCCCC-CCCCCHHHHHH
T ss_conf 02689877874066-66999974668778---999999999999839599997--2704245611788-89338999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999996399789993999999999999999999999978977999936789078850677999809859995097789
Q 005488 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (694)
Q Consensus 304 vaIA~aLl~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~I~lL~~G~iv~~G~~~e~ 383 (694)
++|||+|+++|+||+|||||++||+.++..+.+.+++. ..|+|+|+++|+++. + ..+|+|++|++|++++.|+|+++
T Consensus 1180 v~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l 1256 (1284)
T 3g5u_A 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQL 1256 (1284)
T ss_dssp HHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEECCEEEEECCHHHH
T ss_conf 99999997499999986875557999999999999986-799989999558799-9-80998999989989997789999
Q ss_pred HH
Q ss_conf 99
Q 005488 384 MA 385 (694)
Q Consensus 384 ~~ 385 (694)
++
T Consensus 1257 ~~ 1258 (1284)
T 3g5u_A 1257 LA 1258 (1284)
T ss_dssp HH
T ss_pred HH
T ss_conf 84
Done!