Query 005489
Match_columns 694
No_of_seqs 175 out of 284
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 18:55:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005489.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1994-1998//hhsearch_pdb/005489hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x19_B Importin-13; nuclear tr 1.0 1 1 22.7 22.1 18 421-438 462-479 (963)
2 3u0r_A Apoptosis inhibitor 5; 1.0 1 1 21.9 6.5 194 270-500 102-318 (507)
3 2x1g_F Cadmus; transport prote 1.0 1 1 21.7 20.6 218 268-500 501-740 (971)
4 3gjx_A Exportin-1; transport, 1.0 1 1 20.8 16.0 283 266-553 515-908 (1073)
5 3m1i_C Exportin-1; heat repeat 1.0 1 1 20.8 19.7 65 289-353 520-595 (1049)
6 3a6p_A Exportin-5; exportin-5, 1.0 1 1 19.3 19.8 133 271-410 532-682 (1204)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 17.8 21.5 12 113-124 131-142 (861)
8 3faj_A ORF131, putative unchar 1.0 1 1 16.3 5.3 64 528-595 23-86 (151)
9 1no1_A G39P, replisome organiz 1.0 1 1 15.2 -0.3 64 416-493 13-81 (126)
10 1wa5_C Importin alpha RE-expor 1.0 1 1 15.0 17.2 221 265-499 452-686 (960)
No 1
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=22.74 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 303486899999997133
Q 005489 421 SWQYANCIDLWVTYISHC 438 (694)
Q Consensus 421 NWQfi~sL~lWs~VLs~~ 438 (694)
+|+...+.-++...++..
T Consensus 462 ~w~~~eaal~al~~i~~~ 479 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAET 479 (963)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 667998999999999704
No 2
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=1.00 E-value=1 Score=21.94 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHH--
Q ss_conf 999999961189078999999986512145432648899999999986227874158989999999881069504779--
Q 005489 270 LRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDL-- 347 (694)
Q Consensus 270 l~sll~LL~~ltd~~~l~~vL~~l~~lipy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~la~~~~~~~le~-- 347 (694)
.--|.|||. .-++.-+..|=..|.. .+-..| +.-|..+...-.++++.+|--++-+|+.-....+...+..
T Consensus 102 aDvL~QlLq-tdd~~E~~~V~~sL~s---llk~Dp---k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~ 174 (507)
T 3u0r_A 102 ADILTQLLQ-TDDSAEFNLVNNALLS---IFKMDA---KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEV 174 (507)
T ss_dssp HHHHHHHTT-CCCHHHHHHHHHHHHH---HHHHCH---HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHH---HHHCCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCHHH
T ss_conf 999999984-2445999999999999---993084---878999999870453688999999999997413432212889
Q ss_pred -------HHH----------HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------999----------999999841154795603565989888999933793105699999999999999975300
Q 005489 348 -------CLI----------KMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQT 410 (694)
Q Consensus 348 -------~LK----------~~Y~ayv~n~k~ts~~tlp~InfMkNs~vEL~~lD~~~sYq~AF~YIRQLAIhLRna~~~ 410 (694)
|.| .+.+.+++..|.- .|.++..-|-.-+.|.-.+|....- .-=.+|.++...+|.|+--
T Consensus 175 E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~--~t~~g~qeLv~ii~eQa~L~~~f~~-sD~e~vdRlI~C~~~ALP~ 251 (507)
T 3u0r_A 175 EELILTESKKVLEDVTGEEFVLFMKILSGLKSL--QTVSGRQQLVELVAEQADLEQTFNP-SDPDCVDRLLQCTRQAVPL 251 (507)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG--SSHHHHHHHHHHHHHHHTTTSCCCS-SCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 999999999872024299999999999863244--6741899999999998730578887-6889999999999998898
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHCCC-CC
Q ss_conf 12352632133034868999999971337888862046899999864210367875453-27799999999884169-52
Q 005489 411 KKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLP-LRCKCIEWLNHLSSSSG-IF 488 (694)
Q Consensus 411 k~Ke~~k~VYNWQfi~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~ikL~Pt~ry~P-LRlhlir~L~~Ls~~t~-~f 488 (694)
-.+ .|-+=+|++ |-..| ++-+...+|++--=+ .++.+++.|-.++..|| .=
T Consensus 252 FS~----~v~StkFv~----------------------y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e 304 (507)
T 3u0r_A 252 FSK----NVHSTRFVT----------------------YFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDME 304 (507)
T ss_dssp CBT----TBCCHHHHH----------------------HHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCT
T ss_pred HCC----CCCHHHHHH----------------------HHHHH-HCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 625----887088999----------------------99986-345253256643105789999999999746788601
Q ss_pred EE--CHHHHHHHHC
Q ss_conf 40--5258899620
Q 005489 489 IP--VTSLMLDVLE 500 (694)
Q Consensus 489 IP--i~p~LleiL~ 500 (694)
.+ ..+.+++.|-
T Consensus 305 ~a~~~l~~iy~~L~ 318 (507)
T 3u0r_A 305 KLETNLRKLFDKLL 318 (507)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 39999999999999
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=21.72 Aligned_cols=218 Identities=12% Similarity=0.051 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-
Q ss_conf 99999999961189----0789999999865121454326488999999999862278741589899999998810695-
Q 005489 268 SYLRSTLFMLNQAT----DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS- 342 (694)
Q Consensus 268 syl~sll~LL~~lt----d~~~l~~vL~~l~~lipy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~la~~~~~- 342 (694)
.++..++.++.++. .+.+-..++..+..+..|+...+.....++..++.... ..|+..|...+.+++.....
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 77999999998567653678999999999998788886088989999999998748---588999999999999998886
Q ss_pred --CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_conf --04779999999999841154795603565989888999933-7931056999999999999999753001--235263
Q 005489 343 --DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCS-QDLLRSSNKAKVSINNLSRILQLGLQTK--KKEAVK 417 (694)
Q Consensus 343 --~~le~~LK~~Y~ayv~n~k~ts~~tlp~InfMkNs~vEL~~-lD~~~sYq~AF~YIRQLAIhLRna~~~k--~Ke~~k 417 (694)
++++.++..+...+- ..+... ........|+..+.. +.+.....+.-.++..+.-.+..++... ..+.
T Consensus 578 l~p~~~~ll~~l~~~l~----~~~~~~-~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~-- 650 (971)
T 2x1g_F 578 LKPYADPLLNACHASLN----TGRMKN-SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA-- 650 (971)
T ss_dssp HHHHHHHHHHHHHHHHH----STTSCH-HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHH--
T ss_pred CCCCHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--
T ss_conf 23007999999999972----789992-89999999999999729999999999999989999999998568998225--
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCC-----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC-
Q ss_conf 21330348689999999713378-----------888620468999998642103678754532779999999988416-
Q 005489 418 KICSWQYANCIDLWVTYISHCIH-----------DYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS- 485 (694)
Q Consensus 418 ~VYNWQfi~sL~lWs~VLs~~~~-----------~s~L~pLiYPLvQIi~G~ikL~Pt~ry~PLRlhlir~L~~Ls~~t- 485 (694)
.=+.+++++.-+.++..... ..++.|++-.+.+++..+....+ ...+++=.+++.+-+++..-
T Consensus 651 ---~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 651 ---RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWV--EEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH
T ss_conf ---999999999999998416777685333456788369999999999999998643--637899999999999998614
Q ss_pred CCCEECHHHHHHHHC
Q ss_conf 952405258899620
Q 005489 486 GIFIPVTSLMLDVLE 500 (694)
Q Consensus 486 ~~fIPi~p~LleiL~ 500 (694)
+-|.|..|-+++.|-
T Consensus 726 ~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 726 SSFQPMLQDLCLFIV 740 (971)
T ss_dssp C--CTHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHH
T ss_conf 404252789999999
No 4
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=20.80 Aligned_cols=283 Identities=9% Similarity=0.061 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHCCCCH------H-HHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999996118907------8-9999-9998651214543264889999999998622787415898999999988
Q 005489 266 IKSYLRSTLFMLNQATDS------E-ILAF-SLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVA 337 (694)
Q Consensus 266 iKsyl~sll~LL~~ltd~------~-~l~~-vL~~l~~lipy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~la 337 (694)
-+.|+..++..|-++.+. . +++. +.--+.++..|+..+++.++..+..+++....+...|+-+|-.++.++|
T Consensus 515 E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 515 EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 00229999999863414444341269999999999950079998677999999999999984498789999999999999
Q ss_pred HCCC-----------CCHHHHHHHHHHHHHHH---------------HCCCCCCCC--HHHHH-HHHHHHHH---HH---
Q ss_conf 1069-----------50477999999999984---------------115479560--35659-89888999---93---
Q 005489 338 SGFS-----------SDCFDLCLIKMYKAFIG---------------HCKFAEPAL--FKHLQ-FLRNSFVE---LC--- 382 (694)
Q Consensus 338 ~~~~-----------~~~le~~LK~~Y~ayv~---------------n~k~ts~~t--lp~In-fMkNs~vE---L~--- 382 (694)
...+ .++++.++...-..+-+ -....+... -..|+ +|.-.... +-
T Consensus 595 ~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~ 674 (1073)
T 3gjx_A 595 QKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQA 674 (1073)
T ss_dssp HHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989875235554535999999999999974699999999999999998599720299999999889999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH------HHHH----HHH---HHHHHCC-------------------CCHHHHHHH-
Q ss_conf 379310569999999999999997------5300----123---5263213-------------------303486899-
Q 005489 383 SQDLLRSSNKAKVSINNLSRILQL------GLQT----KKK---EAVKKIC-------------------SWQYANCID- 429 (694)
Q Consensus 383 ~lD~~~sYq~AF~YIRQLAIhLRn------a~~~----k~K---e~~k~VY-------------------NWQfi~sL~- 429 (694)
.-+++.... ...|++|+-.||- ++.. .-. .....+| ....++|++
T Consensus 675 ~~~~~~~~d--~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ 752 (1073)
T 3gjx_A 675 TKNVDILKD--PETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRT 752 (1073)
T ss_dssp HHCGGGGGC--HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHH
T ss_pred HCCCHHCCC--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHH
T ss_conf 217142058--389999999996539988456525799999999999999999999999999827841122599999899
Q ss_pred -------HHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHH-
Q ss_conf -------99999713378-888620468999998642103-67875453277999999998841695240525889962-
Q 005489 430 -------LWVTYISHCIH-DYDLQPLLYIIIQIINGMATL-FPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVL- 499 (694)
Q Consensus 430 -------lWs~VLs~~~~-~s~L~pLiYPLvQIi~G~ikL-~Pt~ry~PLRlhlir~L~~Ls~~t~~fIPi~p~LleiL- 499 (694)
+-.+.++.... +.-...++-||++.+++.-+- +|.+|. |--|.|...++.=-.. ...|-.|.+++.+
T Consensus 753 ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~-~evL~l~s~iv~k~~~--~~~~~~~~il~~vf 829 (1073)
T 3gjx_A 753 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAARE-PEVLSTMAIIVNKLGG--HITAEIPQIFDAVF 829 (1073)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCC-THHHHHHHHHHHHHGG--GTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHH--HCCHHHHHHHHHHH
T ss_conf 99999999999981479789999986789999999988538853136-9999999999999886--54044899999999
Q ss_pred CCCC-C-CCCCCC-----------CC---CCCCCCCCCCCHHHHCCH---------HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0001-1-588998-----------87---777301333561210204---------31899999999999999997606
Q 005489 500 EYKV-S-KEVGKP-----------GK---DFNFSSAVKLPKHWLKSR---------NFREDCVFSAIELLSAHFAQWSY 553 (694)
Q Consensus 500 ~s~~-~-K~~~~~-----------~k---~~df~~~Lk~~k~~l~s~---------~yqd~liee~~eLL~e~la~~S~ 553 (694)
+.+. + +..-.. ++ .-.|...+.+|..+.+.- .-...+-+..+.++.+.+.....
T Consensus 830 ~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 830 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp HHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999998677312968899999999999997769998399999999999999991899716999999999999997624
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=20.79 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-----------CHHHHHHHHHH
Q ss_conf 999865121454326488999999999862278741589899999998810695-----------04779999999
Q 005489 289 SLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS-----------DCFDLCLIKMY 353 (694)
Q Consensus 289 vL~~l~~lipy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~la~~~~~-----------~~le~~LK~~Y 353 (694)
+..-+.++..|+...+.....++..++.....+...|+..|-..+.+++...+. ++++.++..+.
T Consensus 520 ~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~ 595 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQ 595 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9999997799998678999999999999861898789999999999999998898611567787757999999899
No 6
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.33 Aligned_cols=133 Identities=11% Similarity=0.115 Sum_probs=74.5
Q ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HCCC---------CCHHHHHHHHHHHHH
Q ss_conf 99999961--189078999999986512145432648899999999986---2278---------741589899999998
Q 005489 271 RSTLFMLN--QATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL---WATG---------EETVSFHSFLILQDV 336 (694)
Q Consensus 271 ~sll~LL~--~ltd~~~l~~vL~~l~~lipy~~~f~kl~k~llK~lv~l---Ws~~---------~e~vrv~AFl~Lr~l 336 (694)
..++.++- +..++.+....+.-+..+.+|+...|.+....|..++.. +..+ ...+|.+|-.++.++
T Consensus 532 ~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 532 IELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998378877579999999999878788629257999999999861568843124663189999999999999999
Q ss_pred HHCCCC---CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 810695---04779999999999841154795603565989888999933-793105699999999999999975300
Q 005489 337 ASGFSS---DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCS-QDLLRSSNKAKVSINNLSRILQLGLQT 410 (694)
Q Consensus 337 a~~~~~---~~le~~LK~~Y~ayv~n~k~ts~~tlp~InfMkNs~vEL~~-lD~~~sYq~AF~YIRQLAIhLRna~~~ 410 (694)
|...+. ++++.++..+-..+ ..-+ .......+.++.--++ +-. +. .+..--.|+++|---+.+.+.+
T Consensus 612 ~~~~~~~L~p~~~~i~~~~~~~l-~~~~--~l~~~e~~~L~eal~~-ia~~~~---~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 612 CRDYPQLVLPNFDMLYNHVKQLL-SNEL--LLTQMEKCALMEALVL-ISNQFK---NYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHH-HSTT--TSCHHHHHHHHHHHHH-HHGGGC---CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCC--CCCHHHHHHHHHHHHH-HHCCCC---CHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99746878789999999999998-4765--1468889999999999-963679---7999999999999999998746
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=17.79 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHC
Q ss_conf 992575754430
Q 005489 113 KDPGFSKFLESH 124 (694)
Q Consensus 113 kDPEFykyLqen 124 (694)
.-|++..+|.+.
T Consensus 131 ~w~~ll~~L~~~ 142 (861)
T 2bpt_A 131 AWPELMKIMVDN 142 (861)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 549999999998
No 8
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=1.00 E-value=1 Score=16.27 Aligned_cols=64 Identities=13% Similarity=0.254 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20431899999999999999997606976520216799999866520250788999999999999859
Q 005489 528 KSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNI 595 (694)
Q Consensus 528 ~s~~yqd~liee~~eLL~e~la~~S~sIAFPEL~~P~i~~LKkf~K~~k~~~~~~~lK~LidkIeen~ 595 (694)
+...++..-...++.+|..|+ +.-|+|||+. .-+......++.+-.......++.++..|.+-.
T Consensus 23 ~~epkKgdYagg~ikiL~~F~---~G~iGYPevs-LRLAGEEAnl~~sG~E~~keaIHeiIK~IreA~ 86 (151)
T 3faj_A 23 KYEPKKGDYAGGAVKILDMFE---NGQLGYPEVT-LKLAGEEANARRAGDERTKEAIHAIVKMISDAM 86 (151)
T ss_dssp ----CTTCHHHHHHHHHHHHH---TTCCEETHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHH---CCCCCCCEEE-EHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 128741037789999999997---5877886122-011123664212586889999999999999974
No 9
>1no1_A G39P, replisome organizer, gene 39; helical, bipartite, natively unfolded domain, replication; 2.40A {Bacillus phage SPP1} SCOP: a.179.1.1
Probab=1.00 E-value=1 Score=15.20 Aligned_cols=64 Identities=14% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHCC-C-CHHH---HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 63213-3-0348---68999999971337888862046899999864210367875453277999999998841695240
Q 005489 416 VKKIC-S-WQYA---NCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIP 490 (694)
Q Consensus 416 ~k~VY-N-WQfi---~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~ikL~Pt~ry~PLRlhlir~L~~Ls~~t~~fIP 490 (694)
++.+| | +.+- .-+++|-.+|+.+ |+-.+...+.+.+-+.+|-|--=++++.+..+ +...||
T Consensus 13 I~~aYP~~f~~d~~~~~ve~W~~lL~d~-----------~ye~v~~Al~~hI~~~~yPPsiadI~r~~~~i---~~~~~p 78 (126)
T 1no1_A 13 VSEFYPGRFQPDDLKGTVKAWHRVLAEY-----------ELEEIMNNLTDYAKVNKFPPTVSDLLKAQSEQ---RDRFIP 78 (126)
T ss_dssp HHHHSTTTCCCTTHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHHHHCSSCCCGGGGCC--------------
T ss_pred HHHHCHHHHCCCCCHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HCCCCC
T ss_conf 9997878706764167999999998548-----------99999999999997489998999999999986---167899
Q ss_pred CHH
Q ss_conf 525
Q 005489 491 VTS 493 (694)
Q Consensus 491 i~p 493 (694)
..+
T Consensus 79 ~~~ 81 (126)
T 1no1_A 79 SYE 81 (126)
T ss_dssp ---
T ss_pred CHH
T ss_conf 689
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=14.99 Aligned_cols=221 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-
Q ss_conf 8999999999996118--9078999999986512145432648899999999986227874158989999999881069-
Q 005489 265 LIKSYLRSTLFMLNQA--TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS- 341 (694)
Q Consensus 265 liKsyl~sll~LL~~l--td~~~l~~vL~~l~~lipy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~la~~~~- 341 (694)
+...+...++..|..- ..+-+-..++..+.++..++ .+.....++..+++.....+-.||..|..+|.+++....
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999997378744998888330398999999988658--9999999999999984899721999999999999844364
Q ss_pred ---------CCHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------5047799999999998411547--95603565989888999933793105699999999999999975300
Q 005489 342 ---------SDCFDLCLIKMYKAFIGHCKFA--EPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQT 410 (694)
Q Consensus 342 ---------~~~le~~LK~~Y~ayv~n~k~t--s~~tlp~InfMkNs~vEL~~lD~~~sYq~AF~YIRQLAIhLRna~~~ 410 (694)
...+...+..+...++.-.... ++........+-.|+..+...-......++-.-+.+|.-.+...++.
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~ 609 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKN 609 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 44665443598756469999999999997146787764322799999999999888861247999999999999999739
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 12352632133034868999999971337888862046899999864210367875453277999999998841695240
Q 005489 411 KKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIP 490 (694)
Q Consensus 411 k~Ke~~k~VYNWQfi~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~ikL~Pt~ry~PLRlhlir~L~~Ls~~t~~fIP 490 (694)
.....+. .| +++.-+.++.+ ...+...++.-.+..++..++. .....|+|--|.++..|.... ..|.|
T Consensus 610 ~~~~~~~-~~------~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~-~~~~~~~~~~~~i~~~l~~~~---~~~~~ 677 (960)
T 1wa5_C 610 PSNPRFT-HY------TFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFS-EDIQEFIPYVFQIIAFVVEQS---ATIPE 677 (960)
T ss_dssp CCCHHHH-HH------HHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHH-TTCTTTHHHHHHHHHHHHHHC---SSCCT
T ss_pred CCCCHHH-HH------HHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC---CCCCH
T ss_conf 8972788-99------99999999963-8953699999999999999998-605766999999999999735---47889
Q ss_pred CHHHHHHHH
Q ss_conf 525889962
Q 005489 491 VTSLMLDVL 499 (694)
Q Consensus 491 i~p~LleiL 499 (694)
..+-++..+
T Consensus 678 ~~~~~~~~l 686 (960)
T 1wa5_C 678 SIKPLAQPL 686 (960)
T ss_dssp TTGGGHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
Done!