Query 005489
Match_columns 694
No_of_seqs 175 out of 284
Neff 5.5
Searched_HMMs 13730
Date Tue Mar 26 18:59:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005489.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1994-1998//hhsearch_scop/005489hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ho8a_ a.118.1.9 (A:) Regulat 75.7 1.8 0.00013 18.6 10.4 157 269-436 75-255 (477)
2 d1uw4b_ a.118.1.14 (B:) Regula 14.6 23 0.0017 11.4 7.8 63 263-331 1-63 (248)
3 d2vgla_ a.118.1.10 (A:) Adapti 13.9 24 0.0018 11.3 18.3 15 470-484 337-351 (584)
4 d1lsha1 a.118.4.1 (A:285-620) 13.6 24 0.0018 11.2 6.7 13 325-337 226-238 (336)
5 d1nd7a_ d.148.1.1 (A:) WW doma 8.2 37 0.0027 10.0 4.3 39 162-200 203-241 (374)
6 d1i1ip_ d.92.1.5 (P:) Neurolys 7.3 44 0.0032 9.6 5.8 112 347-463 223-362 (665)
7 d1u6gc_ a.118.1.2 (C:) Cullin- 6.7 48 0.0035 9.3 14.5 13 325-337 582-594 (1207)
8 d1fkma2 a.69.2.1 (A:443-630) Y 6.7 48 0.0035 9.3 0.6 19 109-127 15-33 (188)
9 d1kl1a_ c.67.1.4 (A:) Serine h 6.6 40 0.0029 9.8 -0.5 37 512-549 349-385 (405)
10 d1c4za_ d.148.1.1 (A:) Ubiquit 5.9 45 0.0032 9.5 -0.6 12 110-121 132-143 (350)
No 1
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.73 E-value=1.8 Score=18.62 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=85.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHCCHHHH---HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHCCC
Q ss_conf 999999996118907899999998651214---543264889---9999999986227874-158989999999881069
Q 005489 269 YLRSTLFMLNQATDSEILAFSLNRLRTSIV---FFAAFPLLI---RRLIKIAVHLWATGEE-TVSFHSFLILQDVASGFS 341 (694)
Q Consensus 269 yl~sll~LL~~ltd~~~l~~vL~~l~~lip---y~~~f~kl~---k~llK~lv~lWs~~~e-~vrv~AFl~Lr~la~~~~ 341 (694)
|..+++++|..++.++++.++|.-+..++. +...+-++. +..+......--.+++ -+-..+|-.+..++...+
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~ 154 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 154 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999860671789999999999987237323678988763732136788873157605899998999999984565
Q ss_pred CCH--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHH--
Q ss_conf 504--779999999999841154795603565989888999933793105699999-----99999999997530012--
Q 005489 342 SDC--FDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKV-----SINNLSRILQLGLQTKK-- 412 (694)
Q Consensus 342 ~~~--le~~LK~~Y~ayv~n~k~ts~~tlp~InfMkNs~vEL~~lD~~~sYq~AF~-----YIRQLAIhLRna~~~k~-- 412 (694)
... .+. +.. +..|.+. +++....+..-.--+|+.+|... -.|+..|. +|-.|--.||+++.++.
T Consensus 155 ~~~~~~e~-l~~-~~~~l~~--l~~~~~~~~~~i~v~~lq~llr~---~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~ 227 (477)
T d1ho8a_ 155 HNVKLVEK-LLK-NNNLINI--LQNIEQMDTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 227 (477)
T ss_dssp CCHHHHHH-HHH-CHHHHHH--HHCTTCHHHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCHHHH-HHH-HHHHHHH--HHCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 35434788-877-5699998--51213232489999999988267---50789998813221788999999874256542
Q ss_pred --------HHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf --------352632133034868999999971
Q 005489 413 --------KEAVKKICSWQYANCIDLWVTYIS 436 (694)
Q Consensus 413 --------Ke~~k~VYNWQfi~sL~lWs~VLs 436 (694)
+-++|. ||--++=+|..-..
T Consensus 228 ~~~~~~~~~~~~Ql----~Y~~ll~lWlLSF~ 255 (477)
T d1ho8a_ 228 RIVATNSNHLGIQL----QYHSLLLIWLLTFN 255 (477)
T ss_dssp --------CCHHHH----HHHHHHHHHHHTTS
T ss_pred HHHCCCCCCCCHHH----HHHHHHHHHHHHCC
T ss_conf 00003688853799----99999999999758
No 2
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.64 E-value=23 Score=11.42 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 798999999999996118907899999998651214543264889999999998622787415898999
Q 005489 263 RPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFL 331 (694)
Q Consensus 263 ~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~lipy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl 331 (694)
+|.+..|+.-++ ++.++...+- .+++.+.++ +| ..+.....+++.++..|.+..+.+...|=+
T Consensus 1 r~p~~~flr~li--~n~Ls~~n~~-~i~~~i~kl-~~--~n~e~~~~li~~i~~~~~~~~~~i~~yA~l 63 (248)
T d1uw4b_ 1 RPPLQEYVRKLL--YKDLSKVTTE-KVLRQMRKL-PW--QDQEVKDYVICCMINIWNVKYNSIHCVANL 63 (248)
T ss_dssp CCHHHHHHHHHH--HTTCSTTSHH-HHHHHHHTS-CT--TSHHHHHHHHHHHHCGGGSCGGGHHHHHHH
T ss_pred CCCHHHHHHHHH--HHHCCHHHHH-HHHHHHHHC-CC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 980899999999--8647885799-999999977-99--987999899999862502864679999999
No 3
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.85 E-value=24 Score=11.28 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 277999999998841
Q 005489 470 LRCKCIEWLNHLSSS 484 (694)
Q Consensus 470 LRlhlir~L~~Ls~~ 484 (694)
.|+-.++.|..|+..
T Consensus 337 iry~aL~~L~~L~~~ 351 (584)
T d2vgla_ 337 LRYLALESMCTLASS 351 (584)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 499999999999814
No 4
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=13.62 E-value=24 Score=11.23 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5898999999988
Q 005489 325 VSFHSFLILQDVA 337 (694)
Q Consensus 325 vrv~AFl~Lr~la 337 (694)
+|++|...+|+++
T Consensus 226 vR~aAi~Alr~~~ 238 (336)
T d1lsha1 226 VQAEAIMALRNIA 238 (336)
T ss_dssp HHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999998765
No 5
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=37 Score=10.04 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 766499999999998715992889999999999963055
Q 005489 162 KLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGA 200 (694)
Q Consensus 162 k~lT~~~v~~W~~~l~~~~s~~alr~lv~AFraA~~~~~ 200 (694)
..||.+-++++.+.+.+..-.+.++..+.|||..-+..-
T Consensus 203 ~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vi 241 (374)
T d1nd7a_ 203 ILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVV 241 (374)
T ss_dssp CBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 520687899999999999972117899999998698767
No 6
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.27 E-value=44 Score=9.59 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH----------HHHHHHHHHHHHHHHHHHHH------
Q ss_conf 99999999998411547956035659898889999337931056----------99999999999999975300------
Q 005489 347 LCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSS----------NKAKVSINNLSRILQLGLQT------ 410 (694)
Q Consensus 347 ~~LK~~Y~ayv~n~k~ts~~tlp~InfMkNs~vEL~~lD~~~sY----------q~AF~YIRQLAIhLRna~~~------ 410 (694)
.+=|.+|.+|...|..-|...+..|--.++..+.|.|-..-+.| .-+..++..|+-.+|.....
T Consensus 223 ~lR~~~~~a~~~r~~~~N~~~l~~il~lR~e~A~LLGf~s~A~~~L~~kMA~spe~V~~FL~~L~~~~~p~a~~E~~~L~ 302 (665)
T d1i1ip_ 223 ETRRKMEMAFHTRCKQENTAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFIL 302 (665)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999873224202679999999999989986388979999887650376788999999999971444699999999
Q ss_pred --HHHHH-------HHHCCCCHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf --12352-------63213303486899999997133---7888862046899999864210367
Q 005489 411 --KKKEA-------VKKICSWQYANCIDLWVTYISHC---IHDYDLQPLLYIIIQIINGMATLFP 463 (694)
Q Consensus 411 --k~Ke~-------~k~VYNWQfi~sL~lWs~VLs~~---~~~s~L~pLiYPLvQIi~G~ikL~P 463 (694)
++++. -..+.-|-. .+|++-+... ..++.|+|- +||-+|+.|+..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~l~pWD~----~Yy~~k~r~~~~~~d~~~l~~Y-Fpl~~vl~gl~~l~~ 362 (665)
T d1i1ip_ 303 SLKKKECEERGFEYDGKINAWDL----HYYMTQTEELKYSVDQESLKEY-FPIEVVTEGLLSIYQ 362 (665)
T ss_dssp HHHHHHHHTTTCCCCSSCCHHHH----HHHHHHHHHHHSCCCHHHHGGG-CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCH----HHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHH
T ss_conf 99877655337776566673317----8888887764212331012455-637889999999999
No 7
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.74 E-value=48 Score=9.31 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5898999999988
Q 005489 325 VSFHSFLILQDVA 337 (694)
Q Consensus 325 vrv~AFl~Lr~la 337 (694)
+|..|..++..++
T Consensus 582 ~~~~al~~l~~l~ 594 (1207)
T d1u6gc_ 582 VKERAISCMGQII 594 (1207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8898999999898
No 8
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.71 E-value=48 Score=9.30 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=14.3
Q ss_pred HHHCCCHHHHHHHHHCCCC
Q ss_conf 6512992575754430832
Q 005489 109 RLKAKDPGFSKFLESHDKG 127 (694)
Q Consensus 109 ~LkekDPEFykyLqenD~~ 127 (694)
-|+..||+.|++|++.+=+
T Consensus 15 ll~~~dp~L~~hl~~~~i~ 33 (188)
T d1fkma2 15 LVKRIDADLYNHFQNEHVE 33 (188)
T ss_dssp HHHHHCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 9999889999999984999
No 9
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.63 E-value=40 Score=9.84 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77773013335612102043189999999999999999
Q 005489 512 KDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFA 549 (694)
Q Consensus 512 k~~df~~~Lk~~k~~l~s~~yqd~liee~~eLL~e~la 549 (694)
.|++- .-||+....+-+|++.+.=+.++.+++.+.+.
T Consensus 349 ~~~~~-SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 349 SPFVT-SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp CTTTC-SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCC-CCEEECCHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99988-72265688998589988999999999999996
No 10
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.89 E-value=45 Score=9.53 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=4.3
Q ss_pred HHCCCHHHHHHH
Q ss_conf 512992575754
Q 005489 110 LKAKDPGFSKFL 121 (694)
Q Consensus 110 LkekDPEFykyL 121 (694)
|.+-||++|+-|
T Consensus 132 l~~~D~~~~~sl 143 (350)
T d1c4za_ 132 LGDSHPVLYQSL 143 (350)
T ss_dssp HHHHSHHHHHHH
T ss_pred HHHHCHHHHHHH
T ss_conf 566298999999
Done!