Query 005491
Match_columns 694
No_of_seqs 330 out of 844
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 18:05:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005491.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1999-2003//hhsearch_pdb/005491hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 209.1 14.1 116 114-229 5-122 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 138.1 11.4 99 118-226 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 110.5 10.1 96 119-225 7-102 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 37.4 7.9 93 119-212 17-123 (404)
5 1vd2_A Protein kinase C, IOTA 1.0 1 1 32.9 7.3 60 581-646 5-64 (89)
6 1wmh_B Partitioning defective- 1.0 1 1 31.3 8.7 78 580-662 4-85 (86)
7 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 27.1 5.9 72 581-656 4-91 (102)
8 1q1o_A Cell division control p 1.0 1 1 25.7 7.9 76 580-655 3-85 (98)
9 2ktr_A Sequestosome-1; autopha 1.0 1 1 24.5 6.6 76 580-661 18-115 (117)
10 1oey_A P67-PHOX, neutrophil cy 1.0 1 1 22.4 8.2 72 583-662 6-80 (83)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=209.08 Aligned_cols=116 Identities=29% Similarity=0.452 Sum_probs=106.0
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCH
Q ss_conf 99999300799962625699989416711103001999999999993299998579984899999939997024324501
Q 005491 114 DSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWS 193 (694)
Q Consensus 114 ~~~~~~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs 193 (694)
...++..++|.|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHH
T ss_conf 78999862499998557718977799678999966886544457883899999589999999999978999638837748
Q ss_pred HHHCCCCCCCCCEEEEEECCC--CCEEEEEEECCCCCC
Q ss_conf 132026788898999997689--738999997222368
Q 005491 194 TFVTSKRLVAGDTFVFLRGEN--GELHVGVRCLARQQS 229 (694)
Q Consensus 194 ~FV~~K~L~aGD~VvF~r~~~--G~l~VGIRRa~~~~~ 229 (694)
.||++|+|++||.|+|++.++ +.|+|++||+.....
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~ 122 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 122 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 87787199889899999953899689999998999986
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=138.08 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=86.8
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHC
Q ss_conf 93007999626256999894167111030019999999999932999985799848999999399970243245011320
Q 005491 118 PKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVT 197 (694)
Q Consensus 118 ~~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~FV~ 197 (694)
+..++|.|+||+||+.+...|.||+++++.+||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHH
T ss_conf 999989999785661898679909999997488888-------37999979-9478989999589--0787776389888
Q ss_pred CCCCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 267888989999976897--38999997222
Q 005491 198 SKRLVAGDTFVFLRGENG--ELHVGVRCLAR 226 (694)
Q Consensus 198 ~K~L~aGD~VvF~r~~~G--~l~VGIRRa~~ 226 (694)
+++|++||.|+|....+. .+.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HCCCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 7599989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=110.47 Aligned_cols=96 Identities=19% Similarity=0.298 Sum_probs=82.6
Q ss_pred CCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 30079996262569998941671110300199999999999329999857998489999993999702432450113202
Q 005491 119 KVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTS 198 (694)
Q Consensus 119 ~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~FV~~ 198 (694)
..+.|.|+|+++|... +|.||+++++.+.+.+ ...+.++|..|+.|++++..+ .++..|+.||..||++
T Consensus 7 ~~p~F~K~l~~~~~~~--~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~--~~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHHTT--CEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCCCC--EEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEE--CCCEEECCCHHHHHHH
T ss_conf 8987899987777553--1888999998648669-------988999979999999999998--9949986294999997
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 678889899999768973899999722
Q 005491 199 KRLVAGDTFVFLRGENGELHVGVRCLA 225 (694)
Q Consensus 199 K~L~aGD~VvF~r~~~G~l~VGIRRa~ 225 (694)
++|++||.++|....+..+.|-|-|..
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 599989899999858976999997898
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=37.39 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=67.3
Q ss_pred CCEEEEEECCCCCCCCC----CCEEEECCCHHHCCCCCCC-CCCCCCEEEEEE--ECCCCEEEEEEEEEC------CCCC
Q ss_conf 30079996262569998----9416711103001999999-999993299998--579984899999939------9970
Q 005491 119 KVHSFSKVLTASDTSTH----GGFSVLRKHATECLPPLDM-NQSTPTQELVAK--DLHGYEWRFKHIFRG------QPRR 185 (694)
Q Consensus 119 ~~~~F~K~LT~SDv~~~----grlsVPk~~Ae~~fP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~~rg------~prr 185 (694)
....|+|.|++.|++.. .++.+|+..+...||.|+. ....+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 24324501-1320267888989999976
Q 005491 186 HLLTTGWS-TFVTSKRLVAGDTFVFLRG 212 (694)
Q Consensus 186 ~lLTtGWs-~FV~~K~L~aGD~VvF~r~ 212 (694)
|.||. |. .+.-.....+||.++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=32.89 Aligned_cols=60 Identities=18% Similarity=0.372 Sum_probs=46.8
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECCCC
Q ss_conf 865359975681133452279988959999999987510144568996069985699985880577
Q 005491 581 NRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 646 (694)
Q Consensus 581 ~~~~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 646 (694)
...-+|++.+|.-+-=.++. --+|++|..++.++|.+.. ...+.+.|.|.|||+.-+-.+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~----~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN----EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS----SCCEEEEECCSSSCCEECCSH
T ss_pred CEEEEEEEECCEEEEEECCC--CCCHHHHHHHHHHHHCCCC----CCEEEEEEECCCCCCCCCCCH
T ss_conf 71899999478599998799--9899999999999968898----982799999899795033488
No 6
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=31.35 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=56.4
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECCCC-CHHHHHHCCE--
Q ss_conf 9865359975681133452279988959999999987510144568996069985699985880577-8677873130--
Q 005491 580 SNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD-PWHEFCNMVK-- 656 (694)
Q Consensus 580 ~~~~~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~-PW~~F~~~vk-- 656 (694)
+...-||..-+++--==++|-+...+|++|+..++++|.+. .-.+.+.|+|.+||+.-.-++ -..+-+.++|
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~pl 78 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPP 78 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSC
T ss_pred CCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC-----CCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 88799986338804676726887878899999999975789-----9878999988999976145889999999728874
Q ss_pred -EEEEEE
Q ss_conf -789961
Q 005491 657 -RIFICS 662 (694)
Q Consensus 657 -ri~I~~ 662 (694)
||+|-+
T Consensus 79 LRl~Iqr 85 (86)
T 1wmh_B 79 LRLLVQK 85 (86)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 7999971
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=27.05 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=46.5
Q ss_pred CCCEEEEEECCC----EEEEEECCC-----------CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECCC
Q ss_conf 865359975681----133452279-----------98895999999998751014456899606998569998588057
Q 005491 581 NRSRTKVQMQGV----AVGRALDLT-----------TLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD 645 (694)
Q Consensus 581 ~~~~vKV~m~G~----~vGR~vDL~-----------~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD 645 (694)
...-+|++..|. .--|..-|. .-.+|++|...+.++|.--. ..++.+.|.|.|||+.-+.+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----~~~f~l~Y~DedGDlItiSs 79 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----PGGFQAHYRAERGDLVAFSS 79 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----SSCEEEEEECTTCCEEEECS
T ss_pred CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC----CCCEEEEEECCCCCEEEECC
T ss_conf 46999999816777787269988336777542224466669999999999754457----98389999989999897648
Q ss_pred C-CHHHHHHCCE
Q ss_conf 7-8677873130
Q 005491 646 D-PWHEFCNMVK 656 (694)
Q Consensus 646 ~-PW~~F~~~vk 656 (694)
+ -..+-...++
T Consensus 80 DeEL~~Al~~~~ 91 (102)
T 2kkc_A 80 DEELTMAMSYVK 91 (102)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHCC
T ss_conf 899999997158
No 8
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=25.70 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=54.9
Q ss_pred CCCCEEEEEECCC------EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECC-CCCHHHHH
Q ss_conf 9865359975681------1334522799889599999999875101445689960699856999858805-77867787
Q 005491 580 SNRSRTKVQMQGV------AVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVG-DDPWHEFC 652 (694)
Q Consensus 580 ~~~~~vKV~m~G~------~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG-D~PW~~F~ 652 (694)
+....+||+-+.. .=-|.|=...--+|++|+.++.+-|.+...-.-.....+-|+|.|||+...+ |+=|++-+
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~ 82 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAK 82 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCHHHHHHHH
T ss_conf 75189999935765666668679999669998999999999997678654546504799996999988772889999999
Q ss_pred HCC
Q ss_conf 313
Q 005491 653 NMV 655 (694)
Q Consensus 653 ~~v 655 (694)
.++
T Consensus 83 e~~ 85 (98)
T 1q1o_A 83 EML 85 (98)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 997
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=24.51 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=49.2
Q ss_pred CCCCEEEEEECC-----CEEEEEECCC-----------CCCCHHHHHHHHHHHHH-HCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 986535997568-----1133452279-----------98895999999998751-014456899606998569998588
Q 005491 580 SNRSRTKVQMQG-----VAVGRALDLT-----------TLVGYDHLIDELEEMFD-IKGQLHTRTKWEIVYTDDEGDMML 642 (694)
Q Consensus 580 ~~~~~vKV~m~G-----~~vGR~vDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~ml 642 (694)
....-+|++..| ..| |..-|. .-.+|++|...+.++|. +. ...+.+.|.|.|||+.-
T Consensus 18 ~~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-----~~~f~l~YkDEdGDlIt 91 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-----PGGFQAHYRAERGDLVA 91 (117)
T ss_dssp --CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-----SSCEEEEEECTTCCEEE
T ss_pred CCCEEEEEEEECCCCCCCCE-EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-----CCCEEEEEECCCCCEEE
T ss_conf 45289999980677788727-9988426777431124567779999999999734558-----98389999989999897
Q ss_pred CCCC-CHHHHHHCCE----EEEEE
Q ss_conf 0577-8677873130----78996
Q 005491 643 VGDD-PWHEFCNMVK----RIFIC 661 (694)
Q Consensus 643 vGD~-PW~~F~~~vk----ri~I~ 661 (694)
+..+ -..+-+..++ ||+|.
T Consensus 92 ISsDeEL~~Al~~~~~~~lRlyVk 115 (117)
T 2ktr_A 92 FSSDEELTMAMSYVKDDIFRIYIK 115 (117)
T ss_dssp ECSHHHHHHHHHHCCSSEEEEEEE
T ss_pred ECCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 638899999998337881899998
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=22.43 Aligned_cols=72 Identities=13% Similarity=0.235 Sum_probs=57.3
Q ss_pred CEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-CCCCEEECCCCCHHHHHHCCE--EEE
Q ss_conf 53599756811334522799889599999999875101445689960699856-999858805778677873130--789
Q 005491 583 SRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTD-DEGDMMLVGDDPWHEFCNMVK--RIF 659 (694)
Q Consensus 583 ~~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--ri~ 659 (694)
.-+|||-+ .--+|....=-+|.+|...|.+=+.+.++- -++-|.| .+|.+++.+|+-+++-..-|+ ||+
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~-----~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~Lt 77 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH-----TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLT 77 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG-----CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEE
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHHCCCCCE-----EEEEEECCCCCCEECCCHHHHHHHHHHCCCCCEE
T ss_conf 89999999---999999779999899999999985899641-----4999607878970135757799999752388089
Q ss_pred EEE
Q ss_conf 961
Q 005491 660 ICS 662 (694)
Q Consensus 660 I~~ 662 (694)
++=
T Consensus 78 L~C 80 (83)
T 1oey_A 78 LWC 80 (83)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 998
Done!