Query 005492
Match_columns 694
No_of_seqs 471 out of 3301
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 18:19:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005492.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1999-2003//hhsearch_pdb/005492hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 402.8 18.7 261 360-639 41-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 401.9 15.0 262 360-640 13-292 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 397.2 16.6 258 360-636 26-305 (308)
4 4b9d_A Serine/threonine-protei 1.0 1 1 393.7 14.5 251 360-631 24-277 (350)
5 4ase_A Vascular endothelial gr 1.0 1 1 392.4 17.3 272 350-639 54-349 (353)
6 4fie_A Serine/threonine-protei 1.0 1 1 389.1 17.9 251 359-631 150-401 (423)
7 3omv_A RAF proto-oncogene seri 1.0 1 1 388.4 17.6 267 355-640 31-303 (307)
8 4fih_A Serine/threonine-protei 1.0 1 1 387.7 16.5 250 360-631 74-324 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 377.1 20.3 257 359-640 57-319 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 377.0 13.8 249 360-631 32-285 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.83 Aligned_cols=261 Identities=28% Similarity=0.474 Sum_probs=220.0
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEE
Q ss_conf 49886612432074799999982------993999998235680209999999999963268761017759963792189
Q 005492 360 DNYNANRILGQGGQGTVYKGMLT------DGRIVAVKKSKLVDETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPLL 433 (694)
Q Consensus 360 ~~f~~~~~Lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~l 433 (694)
++|.+.++||+|+||+||+|.+. ++..||||+++..+....++|.+|+.++++++|||||+++|++.+.+..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 9982799996788740367------------7788999999999999999999874499984404666460887799937
Q 005492 434 VYEFIPNGTLYQYIHNQIE------------EFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRA 501 (694)
Q Consensus 434 v~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~~~ 501 (694)
||||+++|+|.++++.... ..+++|.+++.|+.|+|.||+|||+.+ |+||||||+||||++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9931278522344776-11112331789889721136998820027742688999884-999876678756761799999
Q 005492 502 KVSDFGTSRSVMVDQT-HLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILT-GQKPIRAINTDEDKSLVGYFL 579 (694)
Q Consensus 502 kl~DfGl~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~ellt-g~~p~~~~~~~~~~~~~~~~~ 579 (694)
||+|||+++....... .......||+.|||||++.+..++.++||||||++||||+| |+.||......+ +.
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~-------~~ 270 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE-------AI 270 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH-------HH
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH-------HH
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989999-------99
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 986304035662044431342999999999999811349999999888999994150146
Q 005492 580 QAINENRLFEILDARVLKEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFELGGIRTST 639 (694)
Q Consensus 580 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~L~~~~~~~ 639 (694)
..+..+... ..+...++.+.+|+.+||+.+|++||||.||+++|+.+....
T Consensus 271 ~~i~~g~~~---------~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 271 DCITQGREL---------ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HHHHHTCCC---------CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HHHHCCCCC---------CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 999808989---------986446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=401.94 Aligned_cols=262 Identities=28% Similarity=0.475 Sum_probs=220.8
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEE
Q ss_conf 49886612432074799999982------993999998235680209999999999963268761017759963792189
Q 005492 360 DNYNANRILGQGGQGTVYKGMLT------DGRIVAVKKSKLVDETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPLL 433 (694)
Q Consensus 360 ~~f~~~~~Lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~l 433 (694)
++|.+.+.||+|+||+||+|.+. ++..||||+++.......++|.+|+.++++++|||||+++|++.+.+..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 998279999678874036----------7778899999999999999999987449998440466646088779993799
Q 005492 434 VYEFIPNGTLYQYIHNQI----------EEFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKV 503 (694)
Q Consensus 434 v~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl 503 (694)
||||+++|+|.++|+... ....++|..++.|+.|+|.||+|||+.+ |+||||||+||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 312785223447761-1112331789889721136998820027742688999884-99987667875676179999998
Q 005492 504 SDFGTSRSVMVDQTH-LTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILT-GQKPIRAINTDEDKSLVGYFLQA 581 (694)
Q Consensus 504 ~DfGl~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 581 (694)
+|||+++........ ......||+.|||||++.+..++.++||||||++||||+| |+.||...+..+ +...
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~-------~~~~ 242 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE-------VIEC 242 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-------HHHH
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH-------HHHH
T ss_conf 873001006788741664751347010388987079997036677889999999808999999989999-------9999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 63040356620444313429999999999998113499999998889999941501469
Q 005492 582 INENRLFEILDARVLKEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFELGGIRTSTG 640 (694)
Q Consensus 582 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~L~~~~~~~~ 640 (694)
+..+...+ .+...+..+.+|+.+||+.+|++||++.++++.|+++.+..+
T Consensus 243 i~~~~~~~---------~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 243 ITQGRVLQ---------RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp HHHTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred HHCCCCCC---------CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 98089889---------974143999999999768796689299999999987776397
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=397.20 Aligned_cols=258 Identities=24% Similarity=0.395 Sum_probs=214.6
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC------CCCEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCE
Q ss_conf 49886612432074799999982------9939999982356-8020999999999996326876101775996379218
Q 005492 360 DNYNANRILGQGGQGTVYKGMLT------DGRIVAVKKSKLV-DETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPL 432 (694)
Q Consensus 360 ~~f~~~~~Lg~G~fg~Vy~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~ 432 (694)
..+++.++||+|+||+||+|.+. +++.||||+++.. .....++|.+|+.++++++|||||+++|++.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHHHHCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC
Q ss_conf 99982799996788740367-------------77889999999999999999998744999844046664608877999
Q 005492 433 LVYEFIPNGTLYQYIHNQIE-------------EFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKY 499 (694)
Q Consensus 433 lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~ 499 (694)
|||||+++|+|.++|+.... ...++|..++.|+.|+|.||+|||+.+ |+||||||+||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CEEEEECCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHH
Q ss_conf 379931278522344776-11112331789889721136998820027742688999884-9998766787567617999
Q 005492 500 RAKVSDFGTSRSVMVDQT-HLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILT-GQKPIRAINTDEDKSLVGY 577 (694)
Q Consensus 500 ~~kl~DfGl~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~ellt-g~~p~~~~~~~~~~~~~~~ 577 (694)
.+||+|||+++....... .......||+.|||||++.+..++.++||||||++||||+| |+.||.+.+..+
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~------- 255 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD------- 255 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH-------
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH-------
T ss_conf 7898876020233677740473451257765698998279999630001579999999968999999989999-------
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99986304035662044431342999999999999811349999999888999994150
Q 005492 578 FLQAINENRLFEILDARVLKEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFELGGIR 636 (694)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~L~~~~ 636 (694)
+...+..+...+ .+...+..+.+|+.+||+.+|.+||+|.+|+++|+.+.
T Consensus 256 ~~~~i~~~~~~~---------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 256 VVEMIRNRQVLP---------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp HHHHHHTTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred HHHHHHCCCCCC---------CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 999998199899---------96203699999999975879657929999999998531
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=393.66 Aligned_cols=251 Identities=25% Similarity=0.363 Sum_probs=210.4
Q ss_pred CCCCCCCEEEEECCEEEEEEEECC-CCEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEE
Q ss_conf 498866124320747999999829-939999982356--80209999999999963268761017759963792189998
Q 005492 360 DNYNANRILGQGGQGTVYKGMLTD-GRIVAVKKSKLV--DETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPLLVYE 436 (694)
Q Consensus 360 ~~f~~~~~Lg~G~fg~Vy~~~~~~-~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lv~e 436 (694)
++|++.+.||+|+||+||++.... ++.||||.+... .....+.+.+|+.++++++|||||++++++.+.+..+||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 27999967887403677788999999999999999999874499984404666460887799937993127852234477
Q 005492 437 FIPNGTLYQYIHNQIEEFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQ 516 (694)
Q Consensus 437 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGl~~~~~~~~ 516 (694)
|+++|+|.++|.... ...+++..++.|+.||+.||+|||+.+ |+||||||+||||+.++.+||+|||+++......
T Consensus 104 y~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 889983999999738-999978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 61111233178988972113699882002774268899988499987667875676179999998630403566204443
Q 005492 517 THLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLFEILDARVL 596 (694)
Q Consensus 517 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 596 (694)
.......||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..+ .+.... .+....
T Consensus 180 -~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~-~~~~~~------- 244 (350)
T 4b9d_A 180 -ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN------LVLKII-SGSFPP------- 244 (350)
T ss_dssp -HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHH-HTCCCC-------
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHH-CCCCCC-------
T ss_conf -41014578836039999879998959999999999999997879989969999------999998-089999-------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 13429999999999998113499999998889999
Q 005492 597 KEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFE 631 (694)
Q Consensus 597 ~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~ 631 (694)
.....+..+.+||.+||+.||.+||++.|++++
T Consensus 245 --~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 245 --VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp --CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf --975579999999999855896679089999639
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=392.40 Aligned_cols=272 Identities=28% Similarity=0.424 Sum_probs=223.3
Q ss_pred CCHHHHHHHHCCCCCCCEEEEECCEEEEEEEECC------CCEEEEEECCCC-CHHHHHHHHHHHHHHHHCCC-CCCEEE
Q ss_conf 6856688870498866124320747999999829------939999982356-80209999999999963268-761017
Q 005492 350 FTSKDLEKATDNYNANRILGQGGQGTVYKGMLTD------GRIVAVKKSKLV-DETNVEQFINEVVILSQINH-RNIVKL 421 (694)
Q Consensus 350 ~~~~~l~~~~~~f~~~~~Lg~G~fg~Vy~~~~~~------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h-~niv~l 421 (694)
++.++++...++|++.+.||+|+||+||+|.+.. ++.||||++... .....+.|.+|+.++.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CCCEEEEEECCCCCHHHHHHCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 7599637-921899982799996788740367-------------77889999999999999999998744999844046
Q 005492 422 LGCCLET-EVPLLVYEFIPNGTLYQYIHNQIE-------------EFPITWELLLRIAVEVSGALFYLHSAASIPIYHRD 487 (694)
Q Consensus 422 ~g~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~D 487 (694)
+|+|.+. +..+|||||+++|+|.++|+.... ...+++..++.++.|+|.||+|||+.+ |+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCEEEEECCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCC
Q ss_conf 6646088779993799312785223447761-1112331789889721136998820027742688999884-9998766
Q 005492 488 IKSANILLDDKYRAKVSDFGTSRSVMVDQTH-LTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILT-GQKPIRA 565 (694)
Q Consensus 488 ikp~NIll~~~~~~kl~DfGl~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~ellt-g~~p~~~ 565 (694)
|||+|||+++++.+||+|||+|+....+... ......||+.|||||++.+..|+.++|||||||+||||+| |+.||.+
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 78756761799999986304035662044431342999999999999811349999999888999994150146
Q 005492 566 INTDEDKSLVGYFLQAINENRLFEILDARVLKEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFELGGIRTST 639 (694)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~L~~~~~~~ 639 (694)
....+ .+...+..+... ..+...+..+.+|+.+||+.+|.+|||+.+++++|+.+....
T Consensus 291 ~~~~~------~~~~~i~~g~~~---------~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 291 VKIDE------EFCRRLKEGTRM---------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp CCCSH------HHHHHHHHTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCHHH------HHHHHHHCCCCC---------CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89899------999999738988---------888657899999999976869667939999999999999875
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=389.11 Aligned_cols=251 Identities=26% Similarity=0.385 Sum_probs=211.3
Q ss_pred HCCCCCCCEEEEECCEEEEEEEECC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEE
Q ss_conf 0498866124320747999999829-939999982356802099999999999632687610177599637921899982
Q 005492 359 TDNYNANRILGQGGQGTVYKGMLTD-GRIVAVKKSKLVDETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPLLVYEF 437 (694)
Q Consensus 359 ~~~f~~~~~Lg~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~ 437 (694)
.+.|+..++||+|+||.||+|.... ++.||||++........+.+.+|+.+|++++|||||++++++.+.+..+|||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 79999678874036777889999999999999999998744999844046664608877999379931278522344776
Q 005492 438 IPNGTLYQYIHNQIEEFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQT 517 (694)
Q Consensus 438 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGl~~~~~~~~~ 517 (694)
+++|+|.+++... .+++..+..++.||+.||+|||+++ |+||||||+||||+.++.+||+|||+++.+....
T Consensus 230 ~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 230 LEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp CTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred CCCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 8998289887616----9899999999999999999999889---0446578777898589998980372654777887-
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 11112331789889721136998820027742688999884999876678756761799999986304035662044431
Q 005492 518 HLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLFEILDARVLK 597 (694)
Q Consensus 518 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 597 (694)
.......||+.|||||++.+..|+.++|||||||++|||++|+.||.+....+ ....+..+.....
T Consensus 302 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-------~~~~i~~~~~~~~------- 367 (423)
T 4fie_A 302 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK-------AMKMIRDNLPPRL------- 367 (423)
T ss_dssp CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-------HHHHHHHSCCCCC-------
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-------HHHHHHCCCCCCC-------
T ss_conf 64346664747279999779999968999999999999997879989869999-------9999972799887-------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 3429999999999998113499999998889999
Q 005492 598 EAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFE 631 (694)
Q Consensus 598 ~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~ 631 (694)
.........+.+|+.+||..||.+|||+.|++++
T Consensus 368 ~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 368 KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 6501299999999999867895689099999609
No 7
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=388.37 Aligned_cols=267 Identities=27% Similarity=0.408 Sum_probs=214.1
Q ss_pred HHHHHCCCCCCCEEEEECCEEEEEEEECCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCE
Q ss_conf 88870498866124320747999999829939999982356--8020999999999996326876101775996379218
Q 005492 355 LEKATDNYNANRILGQGGQGTVYKGMLTDGRIVAVKKSKLV--DETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPL 432 (694)
Q Consensus 355 l~~~~~~f~~~~~Lg~G~fg~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~ 432 (694)
++...+++.+.++||+|+||+||+|.+.+ .||||.++.. .....+.|.+|+.++++++|||||+++|++.+ +..+
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~ 107 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLA 107 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred CEECHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEE
T ss_conf 08747994984498208886899999899--68999997268999999999999999985899887469999978-9589
Q ss_pred EEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCC
Q ss_conf 99982799996788740367778899999999999999999987449998440466646088779993799312785223
Q 005492 433 LVYEFIPNGTLYQYIHNQIEEFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSV 512 (694)
Q Consensus 433 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGl~~~~ 512 (694)
|||||+++|+|.++|+.... .+++..++.|+.|+|.||+|||+.+ |+||||||+||||++++.+||+|||+|+..
T Consensus 108 iVmEy~~gGsL~~~l~~~~~--~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 182 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVK 182 (307)
T ss_dssp EEEECCSSCBHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred EEEECCCCCCHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEEC
T ss_conf 99974899878898752489--9999999999999999999997799---527855789978889990899441575424
Q ss_pred CCCC-CCEEEEEECCCCCCCCCCCCC---CCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHH
Q ss_conf 4477-611112331789889721136---998820027742688999884999876678756761799999986304035
Q 005492 513 MVDQ-THLTTKVQGTFGYVDPEYFQS---SQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLF 588 (694)
Q Consensus 513 ~~~~-~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (694)
.... ........||+.|||||++.+ ..|+.++||||||++||||+||+.||...+... .....+..+...
T Consensus 183 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~------~~~~~~~~~~~~ 256 (307)
T 3omv_A 183 SRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD------QIIFMVGRGYAS 256 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH------HHHHHHHTTCCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHHCCCCC
T ss_conf 66776403156446877249878614689987868775728999999997889989999699------999999658888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 6620444313429999999999998113499999998889999941501469
Q 005492 589 EILDARVLKEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFELGGIRTSTG 640 (694)
Q Consensus 589 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~L~~~~~~~~ 640 (694)
+.+ .......+..+.+|+.+||+.+|++||||.+|+++|+.++....
T Consensus 257 p~~-----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 257 PDL-----SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp CCS-----TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred CCC-----CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 872-----00354456999999999757797689098999999999745078
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=387.72 Aligned_cols=250 Identities=26% Similarity=0.387 Sum_probs=210.4
Q ss_pred CCCCCCCEEEEECCEEEEEEEECC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEC
Q ss_conf 498866124320747999999829-9399999823568020999999999996326876101775996379218999827
Q 005492 360 DNYNANRILGQGGQGTVYKGMLTD-GRIVAVKKSKLVDETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPLLVYEFI 438 (694)
Q Consensus 360 ~~f~~~~~Lg~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~~ 438 (694)
+.|+..++||+|+||+||+|.... ++.||||++........+.+.+|+.+|++++|||||++++++.+.+..+|||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99996788740367778899999999999999999987449998440466646088779993799312785223447761
Q 005492 439 PNGTLYQYIHNQIEEFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTH 518 (694)
Q Consensus 439 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGl~~~~~~~~~~ 518 (694)
++|+|.+++... .+++..+..++.||+.||+|||+++ |+||||||+||||+.++.+||+|||+++.+.... .
T Consensus 154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-~ 225 (346)
T 4fih_A 154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-P 225 (346)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-C
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-C
T ss_conf 998089998718----9899999999999999999999888---3556278899788799988990275753667887-7
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 11123317898897211369988200277426889998849998766787567617999999863040356620444313
Q 005492 519 LTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLFEILDARVLKE 598 (694)
Q Consensus 519 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (694)
......||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+ ....+..+..... .
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-------~~~~i~~~~~~~~-------~ 291 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK-------AMKMIRDNLPPRL-------K 291 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-------HHHHHHHSSCCCC-------S
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-------HHHHHHCCCCCCC-------C
T ss_conf 5346562758279999779999968999999999999997879989859999-------9999971799988-------7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 429999999999998113499999998889999
Q 005492 599 AKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFE 631 (694)
Q Consensus 599 ~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~ 631 (694)
.....+..+.+|+.+||+.||.+|||+.|++++
T Consensus 292 ~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 292 NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 502299999999999867995689099999609
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=377.13 Aligned_cols=257 Identities=23% Similarity=0.248 Sum_probs=211.5
Q ss_pred HCCCCCCCEEEEECCEEEEEEEECC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEE
Q ss_conf 0498866124320747999999829-939999982356802099999999999632687610177599637921899982
Q 005492 359 TDNYNANRILGQGGQGTVYKGMLTD-GRIVAVKKSKLVDETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPLLVYEF 437 (694)
Q Consensus 359 ~~~f~~~~~Lg~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lv~e~ 437 (694)
.+.|+..++||+|+||+||++.+.. ++.||||++..... ..+|+.++++++|||||++++++.+.+..+|||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCC
Q ss_conf 79999678874036777889999999999999999998744999844046664608877999-37993127852234477
Q 005492 438 IPNGTLYQYIHNQIEEFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKY-RAKVSDFGTSRSVMVDQ 516 (694)
Q Consensus 438 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~-~~kl~DfGl~~~~~~~~ 516 (694)
+++|+|.++++... .+++..+..++.|++.||+|||+++ |+||||||+||||+.++ ++||+|||+++.+..+.
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CC----EEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 61----11123317898897211369988200277426889998849998766787567617999999863040356620
Q 005492 517 TH----LTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLFEILD 592 (694)
Q Consensus 517 ~~----~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (694)
.. ......||+.|||||++.+..++.++|||||||+||||++|+.||......+. +.........
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~------~~~i~~~~~~----- 274 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL------CLKIASEPPP----- 274 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC------HHHHHHSCCG-----
T ss_pred CCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHCCCCC-----
T ss_conf 65402217854558020089998899989089999999999999978699899899999------9999808998-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 444313429999999999998113499999998889999941501469
Q 005492 593 ARVLKEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFELGGIRTSTG 640 (694)
Q Consensus 593 ~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~L~~~~~~~~ 640 (694)
..+.+...+..+.+|+.+||+.||.+|||+.|++++|........
T Consensus 275 ---~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~ 319 (336)
T 4g3f_A 275 ---IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVG 319 (336)
T ss_dssp ---GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred ---CHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf ---002586679999999999762897689599999999999975443
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=377.02 Aligned_cols=249 Identities=25% Similarity=0.357 Sum_probs=209.4
Q ss_pred CCCCCCCEEEEECCEEEEEEEECC-CCEEEEEECCCC---CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEE
Q ss_conf 498866124320747999999829-939999982356---8020999999999996326876101775996379218999
Q 005492 360 DNYNANRILGQGGQGTVYKGMLTD-GRIVAVKKSKLV---DETNVEQFINEVVILSQINHRNIVKLLGCCLETEVPLLVY 435 (694)
Q Consensus 360 ~~f~~~~~Lg~G~fg~Vy~~~~~~-~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lv~ 435 (694)
++|++.+.||+|+||+||++.... ++.||+|.+... .....+.+.+|+.++++++|||||++++++.+.+..+|||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 82799996788740367778899999999999999999987449998440466646088779993799312785223447
Q 005492 436 EFIPNGTLYQYIHNQIEEFPITWELLLRIAVEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVD 515 (694)
Q Consensus 436 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGl~~~~~~~ 515 (694)
||+++|+|.+++.+.. .+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 6489989999998749---9999999999999999999999887---826878789969858988899876875025778
Q ss_pred C-CCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 7-611112331789889721136998820027742688999884999876678756761799999986304035662044
Q 005492 516 Q-THLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLFEILDAR 594 (694)
Q Consensus 516 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (694)
. ........||+.|||||++.+..|+.++|||||||+||||++|+.||...+..+ ....+.....
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-------~~~~i~~~~~------- 251 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL-------IFAKIIKLEY------- 251 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-------HHHHHHHTCC-------
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-------HHHHHHCCCC-------
T ss_conf 77654367556803079989768999968989989999999974989989979999-------9999971999-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 4313429999999999998113499999998889999
Q 005492 595 VLKEAKKEGIMTVATLAKRCLNLNGKMRPTMKEVAFE 631 (694)
Q Consensus 595 ~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~evl~~ 631 (694)
..+......+.+|+.+||+.||.+||++.|++.+
T Consensus 252 ---~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~ 285 (311)
T 4aw0_A 252 ---DFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY 285 (311)
T ss_dssp ---CCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCH
T ss_pred ---CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCC
T ss_conf ---9996569999999999762897578096797587
Done!