BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005493
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 158 KVLLVGGK---TDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFG 214
K+ +V GK T++ D SV +D WS V+ ++P+ GH V+ + ++ G
Sbjct: 111 KIYVVAGKDLQTEASLD--SVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLG 165
Query: 215 GEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 274
G+ ++ N + +++ K W L T PRS A++ K ++I GG ++
Sbjct: 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKT---PRSMFGVAIHKGK-IVIAGGVTEDGLS 221
Query: 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS----RKKRHAETLIF 330
+ + D +T W ++ P R+ V Y GG + K A T +
Sbjct: 222 ASVEAFDLKTNKW---EVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278
Query: 331 DILKGE 336
DI K E
Sbjct: 279 DIWKYE 284
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 25/202 (12%)
Query: 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNF----DRFSWTAAXXXXXXXXXXXXXXIPACR 148
A+ + +++ V+GG G L V+ L++ D ++ A R
Sbjct: 57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR-------------R 103
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
G + + ++ V G D S+ +D + WS++ GD+ AR G +V AS
Sbjct: 104 GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---GDMQTAREGAGLVVASG 160
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 268
V+ GG DG LN + +D + W + T RS AL +D ++ + GG
Sbjct: 161 VIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMAT---KRSGAGVALLND-HIYVVGGF 215
Query: 269 SKSKTLNDLYSLDFETMIWTRI 290
+ L+ + + + T WT +
Sbjct: 216 DGTAHLSSVEAYNIRTDSWTTV 237
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 265
A+ VL++ GG ++ ++ + +D K+ W L + + +VA++ + +
Sbjct: 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI----TRKRRYVASVSLHDRIYVI 68
Query: 266 GGSSKSKTLNDLYSLDF---ETMIWTRIKIRGFHPSPRAGCCG-VLCGTKWYIAGGGSRK 321
GG L+ + LD+ E +W + R G G G Y++GG
Sbjct: 69 GGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV----RRGLAGATTLGDMIYVSGGFDGS 124
Query: 322 KRHAETLIFDILKGEWSV 339
+RH +D +WS+
Sbjct: 125 RRHTSMERYDPNIDQWSM 142
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 190 AKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247
+ ++PVAR HT S + L+L GG + L+D +FD+K+ W +
Sbjct: 432 SSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW---SMIKSLSH 488
Query: 248 PRSNHVAALYDDKNLLIFGGSSK 270
R H A D N+LI GG ++
Sbjct: 489 TRFRHSACSLPDGNVLILGGVTE 511
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 147 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206
C + IS ++LL+GG+ W FD +T WS++++ HT R
Sbjct: 442 CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS--------LSHTRFRH 493
Query: 207 SS-------VLILFGGEDG 218
S+ VLIL G +G
Sbjct: 494 SACSLPDGNVLILGGVTEG 512
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 159 VLLVGGKTDSGSDRV--SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE 216
+ +VGG+ +R SV +D + W +P GHTV+ ++ + GG+
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPYVVYGHTVLSHMDLVYVIGGK 157
Query: 217 DGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFG 266
R+ LN + ++D K W L T RS A ++D + ++ G
Sbjct: 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTA---RSLFGATVHDGRIIVAAG 204
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW 126
R NH + +K+ VGG++G G LD+V+ + W
Sbjct: 191 RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 153 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNC- 211
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 212 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MRHHRSALGITVHQG 257
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D S TW
Sbjct: 258 KIYVLGGYDGH-TFLDSVECYDPDSDTW 284
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 152 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNC- 210
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 211 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MRHHRSALGITVHQG 256
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D S TW
Sbjct: 257 KIYVLGGYDGH-TFLDSVECYDPDSDTW 283
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 160 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNC- 218
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 219 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MKHRRSALGITVHQG 264
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D + TW
Sbjct: 265 RIYVLGGYDGH-TFLDSVECYDPDTDTW 291
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 159 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNC- 217
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 218 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MKHRRSALGITVHQG 263
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D + TW
Sbjct: 264 RIYVLGGYDGH-TFLDSVECYDPDTDTW 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,811,411
Number of Sequences: 62578
Number of extensions: 811314
Number of successful extensions: 1430
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 37
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)