Query 005493
Match_columns 694
No_of_seqs 468 out of 3326
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 00:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 3.3E-42 7.2E-47 386.3 40.8 336 40-388 119-469 (470)
2 PLN02153 epithiospecifier prot 100.0 1.6E-40 3.4E-45 358.9 37.3 305 72-387 5-339 (341)
3 KOG4693 Uncharacterized conser 100.0 1.7E-40 3.7E-45 324.1 24.4 337 75-475 3-358 (392)
4 KOG4441 Proteins containing BT 100.0 1E-39 2.2E-44 371.2 32.4 289 22-341 263-554 (571)
5 KOG4441 Proteins containing BT 100.0 4E-38 8.6E-43 358.1 29.4 279 85-394 272-553 (571)
6 PLN02153 epithiospecifier prot 100.0 1.6E-36 3.6E-41 327.6 33.0 285 36-333 27-339 (341)
7 PLN02193 nitrile-specifier pro 100.0 6.8E-36 1.5E-40 335.3 37.9 287 90-393 112-416 (470)
8 KOG4693 Uncharacterized conser 100.0 1.2E-36 2.7E-41 297.1 20.6 275 33-320 15-313 (392)
9 PHA02713 hypothetical protein; 100.0 5.1E-36 1.1E-40 342.0 28.4 264 42-341 258-541 (557)
10 KOG0379 Kelch repeat-containin 100.0 1.6E-35 3.5E-40 331.8 31.5 311 81-400 53-370 (482)
11 PHA02713 hypothetical protein; 100.0 9.2E-36 2E-40 339.9 30.1 262 100-394 259-540 (557)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 7.9E-34 1.7E-38 307.4 31.2 274 84-385 3-344 (346)
13 PHA03098 kelch-like protein; P 100.0 1.7E-33 3.7E-38 322.1 30.2 245 72-342 272-520 (534)
14 TIGR03548 mutarot_permut cycli 100.0 5.3E-33 1.1E-37 298.1 30.7 264 87-375 2-314 (323)
15 PRK14131 N-acetylneuraminic ac 100.0 5.9E-33 1.3E-37 303.6 30.9 285 73-391 16-372 (376)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 1.6E-32 3.4E-37 297.2 29.3 264 36-331 12-344 (346)
17 PHA03098 kelch-like protein; P 100.0 2.2E-32 4.9E-37 312.9 30.0 262 100-394 252-518 (534)
18 PRK14131 N-acetylneuraminic ac 100.0 6.8E-32 1.5E-36 295.2 28.9 272 36-339 33-374 (376)
19 TIGR03548 mutarot_permut cycli 100.0 1.2E-31 2.5E-36 287.7 28.7 259 39-321 11-315 (323)
20 KOG4152 Host cell transcriptio 100.0 1.5E-32 3.3E-37 287.9 20.6 304 72-389 15-365 (830)
21 KOG0379 Kelch repeat-containin 100.0 6.6E-31 1.4E-35 294.6 27.7 246 142-393 56-307 (482)
22 KOG1230 Protein containing rep 100.0 3.7E-31 8E-36 272.7 21.0 248 83-341 61-348 (521)
23 PHA02790 Kelch-like protein; P 100.0 2.4E-30 5.2E-35 291.2 28.4 211 94-340 267-477 (480)
24 KOG1230 Protein containing rep 100.0 4E-30 8.7E-35 265.0 21.8 247 32-292 64-349 (521)
25 PHA02790 Kelch-like protein; P 100.0 4.7E-29 1E-33 280.8 28.2 209 152-393 267-476 (480)
26 KOG4152 Host cell transcriptio 100.0 4.3E-29 9.4E-34 262.0 20.7 283 36-333 37-363 (830)
27 PF03089 RAG2: Recombination a 99.9 1.5E-23 3.2E-28 207.8 12.8 237 194-443 19-294 (337)
28 COG3055 Uncharacterized protei 99.7 1.3E-15 2.8E-20 156.7 22.7 264 36-333 41-374 (381)
29 COG3055 Uncharacterized protei 99.7 8.5E-15 1.8E-19 150.7 23.3 275 84-388 32-375 (381)
30 KOG2437 Muskelin [Signal trans 99.6 2.1E-15 4.5E-20 159.6 7.3 269 122-392 237-539 (723)
31 KOG2437 Muskelin [Signal trans 99.5 7.1E-15 1.5E-19 155.6 5.5 263 71-341 236-542 (723)
32 PF13964 Kelch_6: Kelch motif 98.9 1.8E-09 4E-14 82.5 6.3 50 197-249 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 98.9 4.2E-09 9.1E-14 80.5 6.2 50 146-198 1-50 (50)
34 PLN02772 guanylate kinase 98.8 2E-08 4.3E-13 108.0 11.4 90 194-285 21-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.7 1.9E-08 4E-13 76.6 5.9 48 207-257 1-49 (49)
36 PF03089 RAG2: Recombination a 98.7 2.8E-06 6.1E-11 85.8 19.8 159 158-321 40-231 (337)
37 PF01344 Kelch_1: Kelch motif; 98.6 4.1E-08 8.9E-13 73.8 4.8 44 197-240 1-44 (47)
38 PF13415 Kelch_3: Galactose ox 98.6 6.3E-08 1.4E-12 73.7 5.6 48 156-206 1-49 (49)
39 PLN02772 guanylate kinase 98.6 2.2E-07 4.7E-12 100.1 11.5 89 244-335 20-110 (398)
40 PF13418 Kelch_4: Galactose ox 98.6 5.4E-08 1.2E-12 73.9 4.5 47 197-246 1-48 (49)
41 PF01344 Kelch_1: Kelch motif; 98.6 1E-07 2.2E-12 71.6 5.6 45 146-190 1-45 (47)
42 PF07646 Kelch_2: Kelch motif; 98.5 2E-07 4.2E-12 70.9 6.3 45 88-132 1-48 (49)
43 PF07646 Kelch_2: Kelch motif; 98.5 1.8E-07 3.9E-12 71.1 6.0 44 197-240 1-46 (49)
44 PF13418 Kelch_4: Galactose ox 98.5 1.1E-07 2.5E-12 72.1 3.7 46 248-293 1-47 (49)
45 PF13854 Kelch_5: Kelch motif 98.4 4.4E-07 9.6E-12 66.6 5.5 40 85-124 1-42 (42)
46 PF07250 Glyoxal_oxid_N: Glyox 98.4 2.3E-05 4.9E-10 79.9 18.9 178 174-372 47-243 (243)
47 PF13854 Kelch_5: Kelch motif 98.3 9E-07 1.9E-11 64.9 5.3 41 194-234 1-42 (42)
48 smart00612 Kelch Kelch domain. 98.3 1.5E-06 3.3E-11 64.7 4.9 47 209-259 1-47 (47)
49 smart00612 Kelch Kelch domain. 98.1 6.3E-06 1.4E-10 61.3 4.9 46 262-310 2-47 (47)
50 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00034 7.3E-09 71.4 17.4 149 116-293 48-208 (243)
51 TIGR01640 F_box_assoc_1 F-box 98.0 0.0029 6.3E-08 64.4 23.8 208 173-389 14-230 (230)
52 TIGR01640 F_box_assoc_1 F-box 97.9 0.0017 3.6E-08 66.2 21.9 202 114-335 14-230 (230)
53 PRK11138 outer membrane biogen 97.6 0.082 1.8E-06 58.4 29.6 255 72-390 44-315 (394)
54 PRK11138 outer membrane biogen 97.4 0.11 2.4E-06 57.4 27.0 191 91-339 113-320 (394)
55 TIGR03300 assembly_YfgL outer 97.2 0.29 6.3E-06 53.6 27.9 227 92-390 59-300 (377)
56 PF13360 PQQ_2: PQQ-like domai 97.0 0.52 1.1E-05 47.5 27.5 189 94-336 32-233 (238)
57 TIGR03300 assembly_YfgL outer 96.9 0.82 1.8E-05 50.0 28.0 187 94-339 101-305 (377)
58 PF08450 SGL: SMP-30/Gluconola 96.5 1.1 2.5E-05 45.7 25.4 222 98-370 11-243 (246)
59 cd00216 PQQ_DH Dehydrogenases 96.4 2.7 5.8E-05 48.0 28.8 144 72-239 39-192 (488)
60 PF12768 Rax2: Cortical protei 96.4 0.055 1.2E-06 56.7 13.2 124 161-292 2-130 (281)
61 TIGR03866 PQQ_ABC_repeats PQQ- 96.3 1.7 3.7E-05 44.8 27.6 186 100-337 2-191 (300)
62 PF13360 PQQ_2: PQQ-like domai 95.9 2.1 4.6E-05 43.0 28.1 210 114-390 3-233 (238)
63 PF12768 Rax2: Cortical protei 95.8 0.59 1.3E-05 49.1 17.7 120 104-240 3-129 (281)
64 PRK04792 tolB translocation pr 95.8 4.6 0.0001 45.5 26.3 147 173-341 242-390 (448)
65 PF07893 DUF1668: Protein of u 95.8 0.39 8.4E-06 52.1 16.8 120 155-292 75-216 (342)
66 KOG2055 WD40 repeat protein [G 95.7 0.17 3.8E-06 54.9 13.4 151 208-390 225-377 (514)
67 PRK13684 Ycf48-like protein; P 95.7 3.9 8.5E-05 44.2 25.8 242 72-374 74-323 (334)
68 KOG2055 WD40 repeat protein [G 95.6 0.69 1.5E-05 50.4 17.3 192 99-334 225-418 (514)
69 PRK05137 tolB translocation pr 95.6 5.2 0.00011 44.8 26.7 187 173-390 226-415 (435)
70 PF07893 DUF1668: Protein of u 95.4 0.44 9.6E-06 51.6 15.9 117 206-341 75-215 (342)
71 TIGR02800 propeller_TolB tol-p 95.2 6.5 0.00014 43.4 25.4 146 173-341 214-362 (417)
72 PRK04922 tolB translocation pr 94.6 9.5 0.00021 42.7 25.1 146 172-341 227-376 (433)
73 PF14870 PSII_BNR: Photosynthe 94.6 7.6 0.00016 41.3 26.8 242 72-374 4-253 (302)
74 KOG0310 Conserved WD40 repeat- 94.3 2.9 6.3E-05 46.0 17.9 215 98-376 79-302 (487)
75 PF02191 OLF: Olfactomedin-lik 94.3 4.1 8.9E-05 42.1 18.6 194 156-371 30-237 (250)
76 PRK11028 6-phosphogluconolacto 94.2 9.2 0.0002 40.8 26.0 240 100-389 3-260 (330)
77 PRK00178 tolB translocation pr 94.2 11 0.00025 41.8 25.9 145 173-341 223-371 (430)
78 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.1 12 0.00026 43.1 24.0 221 92-336 63-336 (527)
79 PF14870 PSII_BNR: Photosynthe 94.1 9.6 0.00021 40.5 25.2 245 72-373 45-295 (302)
80 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 16 0.00035 42.1 25.1 216 153-390 66-336 (527)
81 PF10282 Lactonase: Lactonase, 93.8 12 0.00026 40.5 23.1 272 72-389 23-324 (345)
82 PF02897 Peptidase_S9_N: Proly 93.8 9.8 0.00021 42.1 21.9 255 98-391 134-408 (414)
83 TIGR02800 propeller_TolB tol-p 93.6 12 0.00026 41.3 22.2 148 114-292 214-363 (417)
84 PF08614 ATG16: Autophagy prot 93.2 0.11 2.4E-06 51.6 4.7 110 568-684 76-185 (194)
85 PRK05137 tolB translocation pr 92.9 19 0.0004 40.3 22.9 188 172-390 181-369 (435)
86 PRK04043 tolB translocation pr 92.9 19 0.0004 40.3 22.5 186 173-390 213-403 (419)
87 cd00094 HX Hemopexin-like repe 92.5 8.8 0.00019 37.9 17.2 152 151-336 11-178 (194)
88 PRK03629 tolB translocation pr 92.5 21 0.00045 39.9 26.3 146 173-341 223-371 (429)
89 PRK10884 SH3 domain-containing 92.5 0.88 1.9E-05 45.5 9.7 77 581-674 94-170 (206)
90 cd00094 HX Hemopexin-like repe 92.3 12 0.00027 36.8 18.1 153 93-286 11-178 (194)
91 cd00200 WD40 WD40 domain, foun 92.3 13 0.00028 36.9 26.1 188 156-389 62-251 (289)
92 PF10186 Atg14: UV radiation r 92.2 0.87 1.9E-05 48.1 10.2 117 569-685 23-154 (302)
93 PF13094 CENP-Q: CENP-Q, a CEN 92.2 1 2.2E-05 43.2 9.7 106 572-681 19-143 (160)
94 PRK13684 Ycf48-like protein; P 92.2 19 0.00042 38.8 26.2 241 71-374 32-280 (334)
95 PRK00178 tolB translocation pr 92.2 22 0.00048 39.5 23.1 141 224-390 223-366 (430)
96 PRK04922 tolB translocation pr 92.2 21 0.00046 39.8 21.8 186 172-390 183-371 (433)
97 PLN00033 photosystem II stabil 92.0 23 0.0005 39.3 26.2 218 72-341 118-364 (398)
98 PF15188 CCDC-167: Coiled-coil 92.0 0.21 4.6E-06 42.2 4.0 63 605-678 2-64 (85)
99 TIGR03866 PQQ_ABC_repeats PQQ- 91.8 17 0.00036 37.3 30.8 234 98-390 42-282 (300)
100 PF02191 OLF: Olfactomedin-lik 91.7 17 0.00038 37.5 18.6 149 148-317 70-238 (250)
101 PF07888 CALCOCO1: Calcium bin 91.7 1.4 3.1E-05 49.8 11.3 111 572-691 198-315 (546)
102 PRK04043 tolB translocation pr 91.6 26 0.00057 39.1 24.2 189 114-341 213-408 (419)
103 PRK11637 AmiB activator; Provi 91.4 1.1 2.4E-05 50.1 10.3 45 587-631 68-112 (428)
104 PRK02889 tolB translocation pr 91.1 29 0.00063 38.7 24.4 145 173-341 220-368 (427)
105 PF14197 Cep57_CLD_2: Centroso 90.8 1.6 3.4E-05 35.7 7.8 60 578-637 3-62 (69)
106 KOG0161 Myosin class II heavy 90.8 1.1 2.4E-05 58.0 10.3 20 529-548 690-709 (1930)
107 PRK04792 tolB translocation pr 90.8 33 0.00071 38.6 23.9 148 114-292 242-391 (448)
108 PF04111 APG6: Autophagy prote 90.7 0.68 1.5E-05 49.5 7.3 93 586-678 42-134 (314)
109 KOG4403 Cell surface glycoprot 90.5 2 4.4E-05 46.4 10.4 119 571-692 243-380 (575)
110 PF00261 Tropomyosin: Tropomyo 90.0 1.5 3.3E-05 44.9 8.9 34 570-603 110-143 (237)
111 PF08450 SGL: SMP-30/Gluconola 89.8 25 0.00054 35.7 19.4 181 98-315 51-243 (246)
112 KOG0999 Microtubule-associated 89.8 2.6 5.7E-05 47.0 10.7 50 569-618 197-247 (772)
113 PF13851 GAS: Growth-arrest sp 89.6 2.3 5E-05 42.4 9.6 110 569-678 44-171 (201)
114 PRK11637 AmiB activator; Provi 89.2 4.5 9.7E-05 45.3 12.7 84 570-653 65-151 (428)
115 PF13088 BNR_2: BNR repeat-lik 89.2 29 0.00064 35.7 19.3 232 72-314 28-275 (275)
116 KOG0980 Actin-binding protein 89.1 2.6 5.7E-05 49.6 10.7 26 656-681 437-462 (980)
117 KOG0993 Rab5 GTPase effector R 89.1 2 4.4E-05 46.1 9.0 73 565-637 99-177 (542)
118 PF05096 Glu_cyclase_2: Glutam 89.0 8.4 0.00018 39.9 13.4 159 150-340 48-210 (264)
119 PLN00181 protein SPA1-RELATED; 89.0 63 0.0014 39.3 25.3 144 156-334 587-739 (793)
120 PF12718 Tropomyosin_1: Tropom 88.9 3 6.5E-05 39.3 9.3 93 570-676 32-134 (143)
121 PF08268 FBA_3: F-box associat 88.8 13 0.00029 33.8 13.6 70 273-342 18-89 (129)
122 cd00200 WD40 WD40 domain, foun 88.5 27 0.00058 34.5 22.3 189 156-390 20-210 (289)
123 PLN00181 protein SPA1-RELATED; 88.5 67 0.0015 39.0 23.4 141 157-334 545-691 (793)
124 KOG0310 Conserved WD40 repeat- 88.4 8.2 0.00018 42.6 13.2 114 205-339 77-191 (487)
125 KOG3478 Prefoldin subunit 6, K 88.3 2.6 5.7E-05 37.0 7.7 84 593-682 11-108 (120)
126 KOG3215 Uncharacterized conser 88.2 7.3 0.00016 38.2 11.4 80 607-686 95-179 (222)
127 PF10282 Lactonase: Lactonase, 88.2 42 0.0009 36.3 25.3 250 103-388 3-276 (345)
128 PF07888 CALCOCO1: Calcium bin 87.9 4.2 9.1E-05 46.2 11.1 63 571-633 148-210 (546)
129 COG1520 FOG: WD40-like repeat 87.5 48 0.001 36.1 26.4 201 95-340 65-277 (370)
130 cd00216 PQQ_DH Dehydrogenases 87.3 59 0.0013 37.0 28.0 147 171-339 254-432 (488)
131 smart00284 OLF Olfactomedin-li 87.2 40 0.00086 34.9 19.5 191 156-370 34-241 (255)
132 KOG1899 LAR transmembrane tyro 87.2 2 4.3E-05 48.6 7.9 48 594-641 153-200 (861)
133 PLN00033 photosystem II stabil 87.0 54 0.0012 36.3 29.3 247 72-374 73-348 (398)
134 PF08581 Tup_N: Tup N-terminal 87.0 7 0.00015 32.8 9.3 70 589-668 6-75 (79)
135 PRK03629 tolB translocation pr 86.7 59 0.0013 36.3 22.1 189 114-340 223-413 (429)
136 PF05010 TACC: Transforming ac 86.7 5.7 0.00012 39.7 10.2 122 566-690 44-195 (207)
137 KOG0977 Nuclear envelope prote 86.5 4 8.7E-05 46.3 10.0 62 574-635 107-168 (546)
138 PF11932 DUF3450: Protein of u 86.3 4.5 9.7E-05 41.8 9.7 96 571-673 40-147 (251)
139 PF09730 BicD: Microtubule-ass 86.2 4.7 0.0001 47.5 10.7 62 565-626 119-181 (717)
140 PF12217 End_beta_propel: Cata 86.2 32 0.00068 35.4 15.0 130 72-216 113-258 (367)
141 PRK13169 DNA replication intia 86.1 2 4.4E-05 38.3 6.0 53 603-669 3-55 (110)
142 PF02897 Peptidase_S9_N: Proly 85.7 50 0.0011 36.5 18.5 206 156-387 134-357 (414)
143 PF08268 FBA_3: F-box associat 85.6 8.4 0.00018 35.2 10.3 85 154-240 3-88 (129)
144 PF04880 NUDE_C: NUDE protein, 85.6 0.85 1.8E-05 43.8 3.6 21 569-589 3-23 (166)
145 PF13851 GAS: Growth-arrest sp 85.6 9.5 0.00021 38.1 11.2 84 565-648 12-95 (201)
146 KOG0649 WD40 repeat protein [G 85.4 47 0.001 34.0 17.9 159 124-316 99-263 (325)
147 PRK01742 tolB translocation pr 85.3 68 0.0015 35.8 22.1 140 173-341 228-369 (429)
148 PF05096 Glu_cyclase_2: Glutam 85.2 14 0.0003 38.4 12.4 113 202-338 49-162 (264)
149 PF00261 Tropomyosin: Tropomyo 85.2 2.2 4.7E-05 43.8 6.7 112 569-680 32-157 (237)
150 COG1196 Smc Chromosome segrega 84.9 4.7 0.0001 51.1 10.8 94 541-636 637-730 (1163)
151 KOG0646 WD40 repeat protein [G 84.5 71 0.0015 35.4 21.3 144 149-321 84-240 (476)
152 PF06156 DUF972: Protein of un 84.3 2.6 5.6E-05 37.5 5.9 54 604-671 4-57 (107)
153 PF09726 Macoilin: Transmembra 84.3 6.3 0.00014 46.7 10.8 67 569-635 442-515 (697)
154 KOG0977 Nuclear envelope prote 84.3 5.3 0.00011 45.4 9.6 96 570-665 110-219 (546)
155 KOG4673 Transcription factor T 84.1 5.7 0.00012 45.5 9.6 54 571-624 475-528 (961)
156 PRK11281 hypothetical protein; 83.9 6.7 0.00014 48.9 11.1 106 573-678 73-220 (1113)
157 PF05529 Bap31: B-cell recepto 83.7 5.8 0.00013 39.2 8.8 56 578-633 116-172 (192)
158 PF03178 CPSF_A: CPSF A subuni 83.7 65 0.0014 34.3 17.8 139 157-317 42-191 (321)
159 PRK09039 hypothetical protein; 83.6 4.1 8.9E-05 44.2 8.3 35 570-604 71-105 (343)
160 PF09726 Macoilin: Transmembra 83.2 5.1 0.00011 47.5 9.4 53 583-635 491-551 (697)
161 TIGR03074 PQQ_membr_DH membran 83.1 1.2E+02 0.0025 36.8 25.5 80 42-131 136-223 (764)
162 PF15619 Lebercilin: Ciliary p 82.6 7.7 0.00017 38.5 9.0 36 607-642 117-152 (194)
163 PF12718 Tropomyosin_1: Tropom 82.6 10 0.00023 35.6 9.5 93 578-674 12-104 (143)
164 KOG0971 Microtubule-associated 82.6 3 6.4E-05 49.2 6.8 92 570-667 959-1050(1243)
165 TIGR01843 type_I_hlyD type I s 82.5 5.2 0.00011 44.3 8.9 26 572-597 143-168 (423)
166 COG1579 Zn-ribbon protein, pos 82.4 9.4 0.0002 39.0 9.7 69 570-638 14-82 (239)
167 PF05911 DUF869: Plant protein 82.3 3.3 7.2E-05 49.3 7.4 97 581-677 25-154 (769)
168 COG4257 Vgb Streptogramin lyas 81.9 59 0.0013 33.9 15.0 113 155-292 198-314 (353)
169 PTZ00421 coronin; Provisional 81.6 1E+02 0.0023 35.2 21.9 108 208-335 138-247 (493)
170 PRK02889 tolB translocation pr 81.6 94 0.002 34.6 21.9 187 172-390 175-363 (427)
171 PHA02562 46 endonuclease subun 81.3 15 0.00032 42.6 12.3 97 572-675 298-397 (562)
172 TIGR03185 DNA_S_dndD DNA sulfu 81.2 6.5 0.00014 46.6 9.5 106 569-676 212-335 (650)
173 PF04156 IncA: IncA protein; 81.2 9.8 0.00021 37.4 9.4 66 570-635 85-150 (191)
174 PF12325 TMF_TATA_bd: TATA ele 81.0 27 0.00059 31.8 11.2 54 564-617 14-67 (120)
175 PF12777 MT: Microtubule-bindi 81.0 3.3 7.2E-05 45.0 6.4 94 574-667 215-308 (344)
176 smart00787 Spc7 Spc7 kinetocho 81.0 12 0.00025 40.1 10.3 17 656-672 270-286 (312)
177 PF10146 zf-C4H2: Zinc finger- 80.9 8.8 0.00019 39.1 8.9 73 565-637 31-103 (230)
178 TIGR02169 SMC_prok_A chromosom 80.8 7.5 0.00016 49.2 10.5 7 585-591 313-319 (1164)
179 PTZ00421 coronin; Provisional 80.7 1.1E+02 0.0024 34.9 36.1 154 157-340 138-297 (493)
180 KOG2321 WD40 repeat protein [G 80.6 43 0.00094 38.1 14.6 126 247-390 132-261 (703)
181 TIGR03185 DNA_S_dndD DNA sulfu 80.5 6.9 0.00015 46.4 9.3 72 572-643 390-463 (650)
182 smart00787 Spc7 Spc7 kinetocho 80.4 9.9 0.00022 40.6 9.6 58 564-622 108-172 (312)
183 PF05529 Bap31: B-cell recepto 80.2 7.2 0.00016 38.5 8.0 64 573-636 118-189 (192)
184 KOG0288 WD40 repeat protein Ti 79.8 6.7 0.00015 42.5 7.9 35 575-609 1-35 (459)
185 PF14915 CCDC144C: CCDC144C pr 79.3 11 0.00023 39.4 8.9 73 568-640 216-303 (305)
186 KOG0933 Structural maintenance 79.1 11 0.00024 45.2 10.0 50 569-618 783-832 (1174)
187 KOG0933 Structural maintenance 79.0 13 0.00029 44.7 10.6 21 633-653 372-392 (1174)
188 PTZ00420 coronin; Provisional 79.0 1.4E+02 0.003 34.9 22.5 152 157-340 138-300 (568)
189 PF12329 TMF_DNA_bd: TATA elem 78.9 13 0.00029 30.7 7.9 61 571-634 10-73 (74)
190 KOG0996 Structural maintenance 78.8 8.7 0.00019 46.9 9.2 66 572-637 390-455 (1293)
191 COG1196 Smc Chromosome segrega 78.1 9.1 0.0002 48.6 9.8 28 652-679 462-489 (1163)
192 PF10212 TTKRSYEDQ: Predicted 77.5 19 0.00041 40.7 10.8 29 569-597 312-342 (518)
193 PF08826 DMPK_coil: DMPK coile 77.2 21 0.00046 28.3 8.1 42 576-617 7-48 (61)
194 PRK08475 F0F1 ATP synthase sub 77.0 16 0.00034 35.4 9.0 95 582-691 55-153 (167)
195 cd00632 Prefoldin_beta Prefold 76.9 19 0.00042 31.7 9.0 32 568-599 8-39 (105)
196 PRK10884 SH3 domain-containing 76.9 5.1 0.00011 40.1 5.7 24 655-678 137-160 (206)
197 KOG0995 Centromere-associated 76.9 4.3 9.3E-05 45.8 5.7 113 570-682 232-364 (581)
198 KOG4657 Uncharacterized conser 76.8 32 0.00069 34.5 10.9 107 567-688 35-144 (246)
199 PF05546 She9_MDM33: She9 / Md 76.8 16 0.00034 36.3 8.9 70 573-642 32-126 (207)
200 PF11559 ADIP: Afadin- and alp 76.7 12 0.00026 35.4 8.1 29 660-688 111-139 (151)
201 TIGR03752 conj_TIGR03752 integ 76.5 14 0.00031 41.2 9.5 67 569-635 69-136 (472)
202 PF08826 DMPK_coil: DMPK coile 76.2 23 0.0005 28.2 8.0 55 587-641 4-58 (61)
203 PF00769 ERM: Ezrin/radixin/mo 76.1 23 0.00051 36.5 10.6 53 584-636 37-89 (246)
204 COG1579 Zn-ribbon protein, pos 75.4 16 0.00034 37.4 8.8 17 666-682 154-170 (239)
205 PF10211 Ax_dynein_light: Axon 75.4 16 0.00034 36.1 8.7 72 588-665 107-178 (189)
206 PF04156 IncA: IncA protein; 75.4 17 0.00036 35.8 9.0 44 578-621 107-150 (191)
207 PRK03918 chromosome segregatio 75.1 14 0.0003 45.4 10.2 57 588-644 187-243 (880)
208 KOG4593 Mitotic checkpoint pro 74.8 14 0.00031 42.7 9.2 114 567-686 504-629 (716)
209 TIGR01554 major_cap_HK97 phage 74.7 14 0.00031 40.5 9.2 47 597-643 23-69 (378)
210 PLN02939 transferase, transfer 74.5 10 0.00023 46.1 8.5 24 646-669 229-252 (977)
211 PF07889 DUF1664: Protein of u 74.0 18 0.0004 33.1 8.1 59 578-636 66-124 (126)
212 PRK10929 putative mechanosensi 73.9 17 0.00038 45.3 10.3 106 573-678 58-201 (1109)
213 PF09755 DUF2046: Uncharacteri 73.7 82 0.0018 33.4 13.7 23 569-591 23-45 (310)
214 PRK05431 seryl-tRNA synthetase 73.7 13 0.00028 41.7 8.5 71 580-650 35-109 (425)
215 PF10473 CENP-F_leu_zip: Leuci 73.5 19 0.00041 33.7 8.2 49 585-640 57-105 (140)
216 PRK01742 tolB translocation pr 73.5 1.6E+02 0.0034 32.9 21.5 119 173-319 272-392 (429)
217 PF10473 CENP-F_leu_zip: Leuci 73.3 29 0.00064 32.4 9.4 64 575-638 19-82 (140)
218 COG4257 Vgb Streptogramin lyas 73.2 1.3E+02 0.0027 31.6 17.6 61 275-342 254-314 (353)
219 PF08317 Spc7: Spc7 kinetochor 73.1 22 0.00047 38.3 9.9 20 659-678 225-244 (325)
220 KOG0315 G-protein beta subunit 73.1 1.2E+02 0.0026 31.3 18.0 180 156-373 51-235 (311)
221 PF00038 Filament: Intermediat 73.0 11 0.00024 40.1 7.7 81 574-668 62-142 (312)
222 KOG0161 Myosin class II heavy 72.9 15 0.00033 48.0 9.8 70 571-640 864-933 (1930)
223 PF00769 ERM: Ezrin/radixin/mo 72.6 11 0.00024 38.8 7.2 40 601-640 26-65 (246)
224 PLN02919 haloacid dehalogenase 72.5 2.7E+02 0.0059 35.2 26.7 212 98-336 635-891 (1057)
225 PF06005 DUF904: Protein of un 72.3 8.5 0.00018 31.7 5.0 51 608-665 4-54 (72)
226 KOG0646 WD40 repeat protein [G 72.1 82 0.0018 34.9 13.6 26 308-338 287-312 (476)
227 PRK09039 hypothetical protein; 72.0 17 0.00036 39.5 8.7 26 581-606 75-100 (343)
228 PRK14472 F0F1 ATP synthase sub 71.9 27 0.00058 33.9 9.4 27 580-606 49-75 (175)
229 KOG2321 WD40 repeat protein [G 71.8 79 0.0017 36.1 13.7 75 194-285 130-207 (703)
230 PRK14474 F0F1 ATP synthase sub 71.6 24 0.00052 36.5 9.4 69 581-649 37-107 (250)
231 PF10168 Nup88: Nuclear pore c 71.6 31 0.00068 41.2 11.5 54 581-634 566-619 (717)
232 COG4026 Uncharacterized protei 71.4 19 0.00041 35.9 7.9 28 655-682 189-216 (290)
233 PF03178 CPSF_A: CPSF A subuni 70.9 1.5E+02 0.0032 31.5 18.2 117 208-342 42-168 (321)
234 PF05266 DUF724: Protein of un 70.9 28 0.00062 34.3 9.2 60 610-676 126-185 (190)
235 TIGR01843 type_I_hlyD type I s 70.8 24 0.00052 39.0 10.0 30 577-606 141-170 (423)
236 COG1566 EmrA Multidrug resista 70.7 18 0.0004 39.2 8.6 108 569-676 94-209 (352)
237 PF04111 APG6: Autophagy prote 70.6 26 0.00057 37.5 9.7 63 569-631 46-108 (314)
238 PRK13455 F0F1 ATP synthase sub 70.4 36 0.00078 33.3 10.0 39 578-616 56-94 (184)
239 PF09730 BicD: Microtubule-ass 70.3 23 0.0005 41.9 9.8 37 569-605 268-304 (717)
240 smart00030 CLb CLUSTERIN Beta 70.3 19 0.00042 35.3 7.6 60 570-636 19-78 (206)
241 KOG2048 WD40 repeat protein [G 70.3 2.2E+02 0.0048 33.2 21.2 151 207-388 393-549 (691)
242 KOG4403 Cell surface glycoprot 70.3 9 0.0002 41.6 5.9 28 607-634 353-380 (575)
243 COG1382 GimC Prefoldin, chaper 69.9 25 0.00053 31.9 7.7 67 569-638 16-93 (119)
244 PF02050 FliJ: Flagellar FliJ 69.8 14 0.00031 32.6 6.5 27 655-681 57-83 (123)
245 COG2433 Uncharacterized conser 69.8 21 0.00045 40.9 8.8 66 570-635 426-508 (652)
246 PF05667 DUF812: Protein of un 69.6 36 0.00078 39.7 11.1 50 583-632 331-380 (594)
247 PRK09174 F0F1 ATP synthase sub 69.6 43 0.00093 33.5 10.3 26 581-606 85-110 (204)
248 PF04012 PspA_IM30: PspA/IM30 69.3 18 0.0004 36.4 7.9 47 584-630 27-73 (221)
249 PF09304 Cortex-I_coil: Cortex 69.3 34 0.00073 30.3 8.2 58 570-636 27-84 (107)
250 KOG0266 WD40 repeat-containing 69.3 2E+02 0.0044 32.4 21.3 151 156-334 257-410 (456)
251 TIGR03007 pepcterm_ChnLen poly 69.0 26 0.00057 39.9 10.0 110 572-681 203-348 (498)
252 KOG0649 WD40 repeat protein [G 69.0 1.4E+02 0.0031 30.6 15.7 135 184-340 100-242 (325)
253 PF09789 DUF2353: Uncharacteri 68.9 22 0.00049 37.8 8.5 87 602-688 17-117 (319)
254 KOG2391 Vacuolar sorting prote 68.9 31 0.00068 36.7 9.3 57 594-654 239-295 (365)
255 PRK13460 F0F1 ATP synthase sub 68.7 34 0.00074 33.1 9.3 27 580-606 47-73 (173)
256 PF10498 IFT57: Intra-flagella 68.6 34 0.00074 37.3 10.1 103 569-675 216-319 (359)
257 COG4942 Membrane-bound metallo 68.6 45 0.00097 36.9 10.9 111 573-683 52-183 (420)
258 PRK06231 F0F1 ATP synthase sub 68.3 32 0.00069 34.4 9.2 62 581-644 80-145 (205)
259 TIGR02658 TTQ_MADH_Hv methylam 67.9 1.9E+02 0.0041 31.6 29.0 261 99-390 13-333 (352)
260 PF09789 DUF2353: Uncharacteri 67.8 22 0.00047 37.9 8.1 89 580-681 126-220 (319)
261 KOG4571 Activating transcripti 67.3 23 0.00049 36.9 7.9 18 655-672 274-291 (294)
262 PF15070 GOLGA2L5: Putative go 67.2 47 0.001 39.0 11.4 112 565-680 79-218 (617)
263 PHA02562 46 endonuclease subun 67.1 45 0.00097 38.6 11.5 71 608-681 248-323 (562)
264 PRK13729 conjugal transfer pil 66.9 14 0.00031 41.2 6.8 39 596-634 78-116 (475)
265 PF05615 THOC7: Tho complex su 66.9 41 0.00089 31.3 9.1 83 570-652 43-128 (139)
266 COG4026 Uncharacterized protei 66.9 55 0.0012 32.7 10.0 64 573-636 142-205 (290)
267 TIGR03007 pepcterm_ChnLen poly 66.8 25 0.00054 40.1 9.2 68 610-677 312-382 (498)
268 PF06637 PV-1: PV-1 protein (P 66.8 36 0.00079 36.7 9.4 90 570-681 289-380 (442)
269 KOG2856 Adaptor protein PACSIN 66.5 31 0.00067 37.0 8.8 72 592-683 179-257 (472)
270 PRK13461 F0F1 ATP synthase sub 66.3 39 0.00084 32.2 9.1 27 580-606 36-62 (159)
271 PF05278 PEARLI-4: Arabidopsis 66.3 31 0.00066 35.8 8.6 62 593-668 199-260 (269)
272 PF09910 DUF2139: Uncharacteri 65.9 1.9E+02 0.004 30.7 19.6 139 112-283 76-230 (339)
273 KOG0250 DNA repair protein RAD 65.9 28 0.00061 42.5 9.4 106 568-677 663-768 (1074)
274 PF12217 End_beta_propel: Cata 65.6 1.7E+02 0.0038 30.3 25.7 267 95-374 22-334 (367)
275 KOG0243 Kinesin-like protein [ 65.4 32 0.0007 42.0 9.8 93 585-678 453-553 (1041)
276 KOG0999 Microtubule-associated 65.4 52 0.0011 37.2 10.5 99 576-679 11-136 (772)
277 PRK05759 F0F1 ATP synthase sub 65.3 61 0.0013 30.6 10.2 41 579-619 34-74 (156)
278 PF05701 WEMBL: Weak chloropla 65.3 60 0.0013 37.4 11.8 53 571-623 32-84 (522)
279 TIGR00414 serS seryl-tRNA synt 65.0 31 0.00066 38.6 9.2 40 612-651 73-113 (418)
280 PF14992 TMCO5: TMCO5 family 64.6 24 0.00053 36.7 7.6 67 569-635 66-136 (280)
281 smart00284 OLF Olfactomedin-li 64.2 1.8E+02 0.004 30.1 18.9 150 147-316 74-242 (255)
282 PF15525 DUF4652: Domain of un 64.1 1.2E+02 0.0027 29.8 11.7 74 217-293 81-158 (200)
283 PLN02678 seryl-tRNA synthetase 63.9 33 0.00072 38.6 9.1 69 583-651 43-115 (448)
284 PRK04863 mukB cell division pr 63.7 49 0.0011 42.9 11.6 7 640-646 425-431 (1486)
285 PF10234 Cluap1: Clusterin-ass 63.6 48 0.001 34.5 9.5 37 570-606 180-216 (267)
286 PRK07352 F0F1 ATP synthase sub 63.5 50 0.0011 32.0 9.4 39 580-618 50-88 (174)
287 COG4942 Membrane-bound metallo 63.4 30 0.00064 38.2 8.3 51 584-634 49-99 (420)
288 PLN03215 ascorbic acid mannose 63.4 1.6E+02 0.0035 32.3 14.0 137 182-339 189-352 (373)
289 cd00089 HR1 Protein kinase C-r 63.1 31 0.00067 28.2 6.6 54 582-635 11-69 (72)
290 PF00038 Filament: Intermediat 63.0 20 0.00044 38.1 7.1 25 571-595 16-40 (312)
291 KOG0239 Kinesin (KAR3 subfamil 62.8 36 0.00077 40.4 9.5 106 569-681 171-293 (670)
292 PF15030 DUF4527: Protein of u 62.7 36 0.00078 34.4 8.0 71 572-642 15-92 (277)
293 PRK07353 F0F1 ATP synthase sub 62.5 53 0.0012 30.4 9.0 27 580-606 36-62 (140)
294 KOG0980 Actin-binding protein 62.5 85 0.0018 37.7 12.1 28 573-600 431-458 (980)
295 PRK13453 F0F1 ATP synthase sub 62.4 54 0.0012 31.8 9.3 27 580-606 49-75 (173)
296 PF13747 DUF4164: Domain of un 62.2 22 0.00048 30.5 5.8 47 589-635 6-59 (89)
297 PRK10476 multidrug resistance 62.2 31 0.00067 37.3 8.5 45 574-618 139-183 (346)
298 CHL00019 atpF ATP synthase CF0 62.2 54 0.0012 32.1 9.4 26 581-606 56-81 (184)
299 PF02239 Cytochrom_D1: Cytochr 62.1 2.4E+02 0.0053 30.8 20.2 253 92-390 39-305 (369)
300 PF09910 DUF2139: Uncharacteri 62.1 2.2E+02 0.0047 30.2 20.9 126 150-287 39-185 (339)
301 TIGR01010 BexC_CtrB_KpsE polys 62.0 33 0.00073 37.3 8.7 24 583-606 173-196 (362)
302 PRK11281 hypothetical protein; 62.0 25 0.00054 44.0 8.4 91 587-682 63-153 (1113)
303 PF12128 DUF3584: Protein of u 61.9 30 0.00065 44.1 9.4 27 580-606 607-633 (1201)
304 PRK11028 6-phosphogluconolacto 61.9 2.2E+02 0.0047 30.1 28.2 240 98-387 46-304 (330)
305 PF07464 ApoLp-III: Apolipopho 61.8 64 0.0014 30.8 9.3 95 569-680 44-148 (155)
306 PF01920 Prefoldin_2: Prefoldi 61.7 63 0.0014 28.0 9.0 25 611-635 65-89 (106)
307 PLN02320 seryl-tRNA synthetase 61.6 37 0.0008 38.7 9.0 42 611-652 133-175 (502)
308 PF12795 MscS_porin: Mechanose 61.6 29 0.00062 35.6 7.6 64 584-647 103-182 (240)
309 PF11932 DUF3450: Protein of u 61.5 41 0.00089 34.7 8.8 107 569-678 45-167 (251)
310 PF14073 Cep57_CLD: Centrosome 61.2 36 0.00078 33.1 7.5 64 607-670 56-123 (178)
311 PF15070 GOLGA2L5: Putative go 61.1 25 0.00055 41.2 7.8 27 654-680 269-295 (617)
312 COG3823 Glutamine cyclotransfe 60.8 1.8E+02 0.0039 29.3 12.3 59 150-215 49-108 (262)
313 PF03962 Mnd1: Mnd1 family; I 60.8 37 0.00081 33.5 7.9 18 473-490 4-21 (188)
314 TIGR03321 alt_F1F0_F0_B altern 60.8 67 0.0015 33.0 10.2 24 582-605 38-61 (246)
315 PF14362 DUF4407: Domain of un 60.5 86 0.0019 33.2 11.3 112 569-689 131-254 (301)
316 PRK09343 prefoldin subunit bet 60.5 74 0.0016 29.0 9.2 17 658-674 93-109 (121)
317 PF09304 Cortex-I_coil: Cortex 60.4 18 0.00038 32.0 4.8 22 654-675 55-76 (107)
318 KOG0994 Extracellular matrix g 60.2 70 0.0015 39.4 11.0 11 682-692 1726-1736(1758)
319 KOG2048 WD40 repeat protein [G 60.1 3.4E+02 0.0073 31.8 22.5 82 296-390 424-508 (691)
320 TIGR00998 8a0101 efflux pump m 60.0 31 0.00068 36.9 8.0 19 656-674 185-203 (334)
321 PF11134 Phage_stabilise: Phag 60.0 2.9E+02 0.0062 30.9 17.8 24 379-402 307-330 (469)
322 PF12325 TMF_TATA_bd: TATA ele 59.9 44 0.00096 30.4 7.6 38 569-606 33-70 (120)
323 PF14073 Cep57_CLD: Centrosome 59.9 43 0.00094 32.5 7.8 49 568-616 59-107 (178)
324 PRK13729 conjugal transfer pil 59.7 28 0.00061 39.0 7.5 54 572-632 68-121 (475)
325 PF11365 DUF3166: Protein of u 59.6 11 0.00024 32.8 3.4 42 611-666 4-45 (96)
326 KOG2148 Exocyst protein Sec3 [ 59.6 15 0.00032 42.3 5.2 31 639-669 259-289 (867)
327 KOG0018 Structural maintenance 59.6 51 0.0011 40.3 9.9 102 570-675 649-750 (1141)
328 KOG3313 Molecular chaperone Pr 59.4 11 0.00023 36.2 3.6 73 585-671 56-163 (187)
329 PF04849 HAP1_N: HAP1 N-termin 59.4 74 0.0016 33.7 10.1 38 603-640 236-273 (306)
330 COG0172 SerS Seryl-tRNA synthe 59.0 25 0.00055 39.1 6.9 31 621-651 74-112 (429)
331 CHL00118 atpG ATP synthase CF0 59.0 94 0.002 29.5 10.2 27 580-606 53-79 (156)
332 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.8 1.1E+02 0.0023 28.3 10.2 21 653-673 101-121 (132)
333 KOG1962 B-cell receptor-associ 58.6 33 0.00071 34.4 7.0 21 606-626 177-197 (216)
334 PF10046 BLOC1_2: Biogenesis o 58.5 52 0.0011 28.8 7.6 54 584-637 11-64 (99)
335 PF06637 PV-1: PV-1 protein (P 58.4 48 0.001 35.8 8.5 28 576-603 302-329 (442)
336 PF00846 Hanta_nucleocap: Hant 58.3 49 0.0011 35.8 8.6 61 574-637 3-71 (428)
337 KOG0976 Rho/Rac1-interacting s 58.3 42 0.00091 39.6 8.6 114 573-686 379-526 (1265)
338 PRK15422 septal ring assembly 58.2 36 0.00077 28.4 5.9 64 610-673 6-69 (79)
339 KOG0994 Extracellular matrix g 58.1 42 0.00092 41.2 8.8 30 575-604 1227-1256(1758)
340 KOG3433 Protein involved in me 58.0 67 0.0014 31.2 8.6 58 568-632 83-140 (203)
341 PF15188 CCDC-167: Coiled-coil 57.8 38 0.00082 28.8 6.2 57 580-636 5-64 (85)
342 PRK13182 racA polar chromosome 57.7 32 0.00069 33.6 6.7 51 581-635 86-145 (175)
343 PRK13454 F0F1 ATP synthase sub 57.5 82 0.0018 30.8 9.7 20 664-683 127-146 (181)
344 KOG0963 Transcription factor/C 57.4 60 0.0013 37.4 9.6 115 573-690 145-275 (629)
345 PRK10636 putative ABC transpor 57.2 18 0.00039 42.8 5.9 33 603-635 600-632 (638)
346 COG3923 PriC Primosomal replic 57.2 57 0.0012 31.1 7.9 61 567-635 113-174 (175)
347 KOG0249 LAR-interacting protei 57.1 51 0.0011 38.5 9.0 42 599-640 200-241 (916)
348 PF15186 TEX13: Testis-express 57.1 38 0.00083 31.6 6.6 24 612-635 128-151 (152)
349 KOG0281 Beta-TrCP (transducin 57.0 1E+02 0.0022 33.1 10.5 90 276-389 341-430 (499)
350 PF03962 Mnd1: Mnd1 family; I 56.7 82 0.0018 31.1 9.5 22 584-605 73-94 (188)
351 KOG1664 Vacuolar H+-ATPase V1 56.5 39 0.00084 33.4 6.9 97 565-679 49-159 (220)
352 KOG4673 Transcription factor T 56.5 54 0.0012 38.0 9.0 79 569-647 412-510 (961)
353 PF15619 Lebercilin: Ciliary p 56.4 1.3E+02 0.0027 29.9 10.8 107 569-675 22-143 (194)
354 KOG4378 Nuclear protein COP1 [ 56.4 2.1E+02 0.0046 32.3 13.1 91 277-390 189-283 (673)
355 PF06156 DUF972: Protein of un 56.2 41 0.00089 30.0 6.6 53 577-636 5-57 (107)
356 PF06818 Fez1: Fez1; InterPro 56.1 98 0.0021 30.8 9.8 65 571-635 22-93 (202)
357 PF01486 K-box: K-box region; 55.9 65 0.0014 28.1 7.9 70 565-636 11-89 (100)
358 KOG3088 Secretory carrier memb 55.9 18 0.00038 37.6 4.7 35 619-653 68-102 (313)
359 PF05567 Neisseria_PilC: Neiss 55.8 3E+02 0.0064 29.8 14.8 79 253-339 152-248 (335)
360 KOG0772 Uncharacterized conser 55.6 3.2E+02 0.0069 31.1 14.4 197 156-389 226-447 (641)
361 TIGR02680 conserved hypothetic 55.5 51 0.0011 42.6 9.9 24 657-680 368-391 (1353)
362 TIGR02338 gimC_beta prefoldin, 55.1 1.2E+02 0.0025 27.0 9.5 34 568-601 12-45 (110)
363 PRK10929 putative mechanosensi 55.1 51 0.0011 41.3 9.4 77 569-645 176-257 (1109)
364 PF08614 ATG16: Autophagy prot 55.0 13 0.00028 36.9 3.6 55 581-635 75-129 (194)
365 COG1842 PspA Phage shock prote 54.9 41 0.00088 34.2 7.2 48 584-631 28-75 (225)
366 PF07106 TBPIP: Tat binding pr 54.5 1.3E+02 0.0029 28.8 10.5 87 569-673 75-161 (169)
367 PF02403 Seryl_tRNA_N: Seryl-t 54.3 84 0.0018 27.6 8.5 54 582-635 38-94 (108)
368 PRK03918 chromosome segregatio 54.1 86 0.0019 38.5 11.4 38 607-644 679-716 (880)
369 KOG1036 Mitotic spindle checkp 53.9 3E+02 0.0064 29.2 16.2 154 143-336 9-166 (323)
370 KOG0978 E3 ubiquitin ligase in 53.8 81 0.0018 37.2 10.2 101 583-683 527-636 (698)
371 PF05262 Borrelia_P83: Borreli 53.8 68 0.0015 36.4 9.3 21 659-679 327-347 (489)
372 COG1520 FOG: WD40-like repeat 53.5 3.2E+02 0.007 29.6 22.2 196 98-332 111-319 (370)
373 PF10168 Nup88: Nuclear pore c 53.5 65 0.0014 38.6 9.6 74 607-680 578-662 (717)
374 PF06428 Sec2p: GDP/GTP exchan 53.4 55 0.0012 28.8 6.8 70 594-670 15-85 (100)
375 TIGR02977 phageshock_pspA phag 52.9 1E+02 0.0022 31.1 9.8 37 586-622 44-80 (219)
376 PF13805 Pil1: Eisosome compon 52.8 1.7E+02 0.0037 30.6 11.3 65 573-637 57-160 (271)
377 PRK09174 F0F1 ATP synthase sub 52.8 89 0.0019 31.2 9.2 22 567-588 81-102 (204)
378 PF01093 Clusterin: Clusterin; 52.7 41 0.00089 37.5 7.3 62 568-636 11-72 (436)
379 cd07675 F-BAR_FNBP1L The F-BAR 52.3 1.3E+02 0.0027 31.2 10.4 115 568-685 101-226 (252)
380 TIGR00606 rad50 rad50. This fa 52.3 49 0.0011 42.7 9.1 44 621-669 798-841 (1311)
381 KOG3647 Predicted coiled-coil 52.2 62 0.0014 33.3 7.8 45 646-690 129-178 (338)
382 PRK06569 F0F1 ATP synthase sub 52.1 1.6E+02 0.0034 28.2 10.1 24 583-606 44-67 (155)
383 PF05557 MAD: Mitotic checkpoi 52.1 1E+02 0.0022 37.1 11.2 108 572-681 502-630 (722)
384 PF07058 Myosin_HC-like: Myosi 52.1 67 0.0014 33.7 8.1 30 565-594 58-87 (351)
385 KOG1760 Molecular chaperone Pr 51.8 36 0.00078 30.8 5.4 28 571-598 31-58 (131)
386 PRK12472 hypothetical protein; 51.8 61 0.0013 36.3 8.3 76 567-642 212-300 (508)
387 PF10280 Med11: Mediator compl 51.8 97 0.0021 28.0 8.5 87 569-658 9-103 (117)
388 PF10211 Ax_dynein_light: Axon 51.6 77 0.0017 31.3 8.4 34 570-603 124-157 (189)
389 PRK14471 F0F1 ATP synthase sub 51.5 1.1E+02 0.0023 29.3 9.3 26 581-606 40-65 (164)
390 PRK04778 septation ring format 51.4 61 0.0013 37.8 9.0 25 610-634 385-409 (569)
391 KOG0289 mRNA splicing factor [ 51.4 3.9E+02 0.0084 29.8 14.2 57 174-241 412-471 (506)
392 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.3 78 0.0017 29.2 8.0 68 568-635 44-118 (132)
393 PRK02224 chromosome segregatio 51.3 58 0.0013 40.0 9.3 34 569-602 471-504 (880)
394 KOG1962 B-cell receptor-associ 51.1 46 0.00099 33.4 6.7 16 578-593 112-127 (216)
395 TIGR02971 heterocyst_DevB ABC 51.1 86 0.0019 33.4 9.5 19 656-674 185-203 (327)
396 PF15525 DUF4652: Domain of un 51.1 2.1E+02 0.0046 28.2 10.9 70 112-190 86-157 (200)
397 COG4913 Uncharacterized protei 50.9 1.1E+02 0.0025 35.9 10.4 118 569-693 633-803 (1104)
398 TIGR00998 8a0101 efflux pump m 50.8 89 0.0019 33.4 9.6 16 589-604 110-125 (334)
399 COG3386 Gluconolactonase [Carb 50.7 3.4E+02 0.0074 29.0 22.0 175 174-373 86-276 (307)
400 PRK09841 cryptic autophosphory 50.7 57 0.0012 39.2 8.8 39 568-606 255-293 (726)
401 PRK15136 multidrug efflux syst 50.7 1.2E+02 0.0025 33.6 10.7 99 572-677 112-217 (390)
402 PRK10115 protease 2; Provision 50.3 5.2E+02 0.011 30.9 26.9 210 98-340 137-353 (686)
403 PRK10698 phage shock protein P 50.2 1E+02 0.0023 31.2 9.3 15 577-591 49-63 (222)
404 PF06428 Sec2p: GDP/GTP exchan 50.1 29 0.00063 30.5 4.5 74 574-650 9-83 (100)
405 PF15290 Syntaphilin: Golgi-lo 50.1 65 0.0014 33.4 7.6 67 567-638 83-172 (305)
406 PLN03188 kinesin-12 family pro 50.0 50 0.0011 41.3 7.9 38 569-606 1169-1216(1320)
407 TIGR03074 PQQ_membr_DH membran 49.9 5.5E+02 0.012 31.2 22.1 33 150-189 188-222 (764)
408 KOG0245 Kinesin-like protein [ 49.8 30 0.00064 42.1 5.9 82 584-672 619-715 (1221)
409 COG4946 Uncharacterized protei 49.7 4.3E+02 0.0093 29.8 26.0 140 174-341 288-439 (668)
410 KOG1853 LIS1-interacting prote 49.7 1.2E+02 0.0027 30.9 9.4 82 578-671 25-112 (333)
411 KOG3433 Protein involved in me 49.6 1.1E+02 0.0024 29.8 8.6 7 601-607 123-129 (203)
412 COG4946 Uncharacterized protei 49.6 4.3E+02 0.0093 29.8 21.7 152 113-291 286-439 (668)
413 PRK10115 protease 2; Provision 49.5 5.3E+02 0.012 30.9 20.4 126 151-293 274-404 (686)
414 PF10212 TTKRSYEDQ: Predicted 49.5 97 0.0021 35.2 9.6 69 567-635 414-482 (518)
415 KOG0996 Structural maintenance 49.3 72 0.0016 39.5 9.0 45 570-614 402-446 (1293)
416 KOG0946 ER-Golgi vesicle-tethe 49.1 45 0.00097 39.5 7.0 21 653-673 740-760 (970)
417 KOG0804 Cytoplasmic Zn-finger 49.0 1.1E+02 0.0023 34.0 9.5 52 570-621 336-388 (493)
418 cd07666 BAR_SNX7 The Bin/Amphi 48.7 1.5E+02 0.0032 30.5 10.2 17 625-641 180-196 (243)
419 PF04012 PspA_IM30: PspA/IM30 48.7 1.3E+02 0.0027 30.3 9.8 38 592-629 103-140 (221)
420 PF05837 CENP-H: Centromere pr 48.6 98 0.0021 27.5 7.8 93 574-667 4-104 (106)
421 PF01166 TSC22: TSC-22/dip/bun 48.5 7.3 0.00016 30.3 0.5 33 621-667 13-45 (59)
422 PF10393 Matrilin_ccoil: Trime 48.5 37 0.0008 25.5 4.2 31 570-603 16-46 (47)
423 PF13870 DUF4201: Domain of un 48.5 1.4E+02 0.003 28.9 9.7 24 654-677 142-165 (177)
424 TIGR01144 ATP_synt_b ATP synth 48.4 1.2E+02 0.0027 28.2 9.0 23 584-606 30-52 (147)
425 PF02841 GBP_C: Guanylate-bind 48.3 1.3E+02 0.0029 31.7 10.3 22 584-605 187-208 (297)
426 PF05816 TelA: Toxic anion res 48.3 1.5E+02 0.0033 32.0 10.8 103 572-678 83-190 (333)
427 PF04899 MbeD_MobD: MbeD/MobD 48.2 1.3E+02 0.0027 24.7 7.6 52 585-636 4-56 (70)
428 KOG1103 Predicted coiled-coil 48.2 37 0.00081 36.0 5.7 40 611-650 241-284 (561)
429 KOG3856 Uncharacterized conser 48.2 30 0.00066 31.2 4.4 30 607-636 9-38 (135)
430 PRK06800 fliH flagellar assemb 48.2 90 0.0019 30.4 7.8 59 569-627 34-92 (228)
431 KOG0266 WD40 repeat-containing 48.2 4.5E+02 0.0097 29.6 20.1 135 174-335 226-366 (456)
432 PF12777 MT: Microtubule-bindi 48.1 73 0.0016 34.6 8.4 28 656-683 81-108 (344)
433 PF13256 DUF4047: Domain of un 48.1 49 0.0011 29.8 5.6 27 593-619 30-56 (125)
434 PF05911 DUF869: Plant protein 47.9 78 0.0017 38.1 9.1 64 574-637 625-688 (769)
435 PF02185 HR1: Hr1 repeat; Int 47.7 1E+02 0.0022 24.9 7.2 54 583-636 4-61 (70)
436 PF07439 DUF1515: Protein of u 47.7 55 0.0012 29.0 5.8 15 656-670 60-74 (112)
437 PF03148 Tektin: Tektin family 47.6 1.4E+02 0.0029 33.1 10.5 72 607-678 257-345 (384)
438 KOG4001 Axonemal dynein light 47.6 58 0.0013 32.0 6.5 39 597-635 181-219 (259)
439 KOG1760 Molecular chaperone Pr 47.5 1.1E+02 0.0025 27.7 7.8 31 570-600 20-50 (131)
440 PF04380 BMFP: Membrane fusoge 47.4 63 0.0014 27.1 6.0 42 595-636 25-78 (79)
441 PF08172 CASP_C: CASP C termin 47.4 72 0.0016 32.9 7.7 30 578-607 4-33 (248)
442 PRK11519 tyrosine kinase; Prov 47.3 82 0.0018 37.9 9.4 55 612-677 343-397 (719)
443 PF02239 Cytochrom_D1: Cytochr 47.3 4.2E+02 0.009 29.0 16.5 215 113-374 15-239 (369)
444 PF05278 PEARLI-4: Arabidopsis 47.2 69 0.0015 33.3 7.4 33 604-636 189-221 (269)
445 PF09403 FadA: Adhesion protei 46.9 1.9E+02 0.0041 26.6 9.5 46 570-618 31-76 (126)
446 PF05130 FlgN: FlgN protein; 46.9 1E+02 0.0023 27.8 8.3 96 584-680 9-111 (143)
447 PF05701 WEMBL: Weak chloropla 46.9 1.3E+02 0.0029 34.6 10.7 70 569-638 123-195 (522)
448 TIGR02894 DNA_bind_RsfA transc 46.8 64 0.0014 30.8 6.6 47 575-628 99-145 (161)
449 cd07655 F-BAR_PACSIN The F-BAR 46.8 1.3E+02 0.0027 31.2 9.6 60 622-685 168-231 (258)
450 PF13870 DUF4201: Domain of un 46.8 2.2E+02 0.0047 27.6 10.7 106 573-685 6-119 (177)
451 PRK00409 recombination and DNA 46.6 1.6E+02 0.0035 35.8 11.7 104 572-689 505-609 (782)
452 PRK13169 DNA replication intia 46.5 79 0.0017 28.4 6.8 51 577-634 5-55 (110)
453 TIGR01069 mutS2 MutS2 family p 46.4 92 0.002 37.8 9.6 52 570-621 512-563 (771)
454 PLN02919 haloacid dehalogenase 46.3 7.2E+02 0.016 31.5 33.3 260 98-390 579-891 (1057)
455 TIGR02680 conserved hypothetic 46.3 1.2E+02 0.0026 39.3 11.1 55 580-634 269-323 (1353)
456 PF02050 FliJ: Flagellar FliJ 46.2 2E+02 0.0043 25.0 10.2 23 668-690 97-119 (123)
457 PRK12704 phosphodiesterase; Pr 46.1 1.9E+02 0.004 33.4 11.6 21 658-678 118-138 (520)
458 PF08606 Prp19: Prp19/Pso4-lik 45.8 1.5E+02 0.0032 24.3 7.5 58 569-633 11-68 (70)
459 KOG0289 mRNA splicing factor [ 45.7 1.1E+02 0.0023 33.9 8.8 103 568-680 73-188 (506)
460 PF12761 End3: Actin cytoskele 45.6 65 0.0014 31.8 6.6 21 657-677 174-194 (195)
461 PF14988 DUF4515: Domain of un 45.6 3.2E+02 0.0069 27.4 11.8 32 658-690 109-140 (206)
462 KOG0316 Conserved WD40 repeat- 45.5 3.6E+02 0.0077 27.7 12.2 96 225-338 82-178 (307)
463 PRK08476 F0F1 ATP synthase sub 45.4 1.7E+02 0.0036 27.3 9.3 19 569-587 37-55 (141)
464 COG3883 Uncharacterized protei 45.4 2E+02 0.0044 29.9 10.5 51 625-675 158-208 (265)
465 TIGR02338 gimC_beta prefoldin, 45.4 1.7E+02 0.0038 25.9 9.0 32 574-605 4-35 (110)
466 KOG0316 Conserved WD40 repeat- 45.0 3.6E+02 0.0079 27.7 13.6 144 154-337 68-217 (307)
467 PRK03947 prefoldin subunit alp 44.9 2.5E+02 0.0053 26.0 10.4 32 587-618 6-37 (140)
468 PF02370 M: M protein repeat; 44.9 41 0.0009 20.7 3.2 19 610-628 3-21 (21)
469 PF08606 Prp19: Prp19/Pso4-lik 44.7 74 0.0016 26.0 5.7 46 574-619 23-68 (70)
470 KOG0291 WD40-repeat-containing 44.7 6.2E+02 0.013 30.3 17.7 156 151-336 311-469 (893)
471 KOG4643 Uncharacterized coiled 44.6 1.9E+02 0.0041 35.4 11.3 57 618-688 274-330 (1195)
472 KOG2264 Exostosin EXT1L [Signa 44.6 94 0.002 35.4 8.3 61 603-677 88-148 (907)
473 PF14988 DUF4515: Domain of un 44.4 1.6E+02 0.0035 29.5 9.5 77 607-683 113-199 (206)
474 PF11471 Sugarporin_N: Maltopo 44.4 26 0.00056 27.8 3.0 24 580-603 32-55 (60)
475 COG4447 Uncharacterized protei 44.4 3.2E+02 0.007 28.7 11.6 143 148-317 46-189 (339)
476 PRK01156 chromosome segregatio 44.3 1.1E+02 0.0025 37.6 10.3 69 578-646 216-287 (895)
477 PF14131 DUF4298: Domain of un 44.3 29 0.00062 29.9 3.6 49 610-658 2-50 (90)
478 COG0497 RecN ATPase involved i 44.3 1E+02 0.0023 35.5 9.0 100 584-684 266-376 (557)
479 PF10146 zf-C4H2: Zinc finger- 44.3 1.3E+02 0.0029 30.6 9.0 72 594-672 32-103 (230)
480 PF07798 DUF1640: Protein of u 44.3 1.5E+02 0.0033 28.8 9.2 53 607-665 43-95 (177)
481 PF08687 ASD2: Apx/Shroom doma 44.2 1.2E+02 0.0026 31.6 8.7 63 573-635 180-254 (264)
482 PRK11519 tyrosine kinase; Prov 44.1 90 0.0019 37.5 9.1 40 567-606 254-293 (719)
483 PF06548 Kinesin-related: Kine 44.1 89 0.0019 34.7 8.0 23 569-591 399-421 (488)
484 PF14197 Cep57_CLD_2: Centroso 43.9 1.5E+02 0.0032 24.2 7.5 57 571-627 10-66 (69)
485 PF14583 Pectate_lyase22: Olig 43.8 4.9E+02 0.011 28.8 23.0 109 225-341 217-336 (386)
486 PRK11578 macrolide transporter 43.5 1.2E+02 0.0027 32.9 9.5 23 583-605 109-131 (370)
487 PRK03947 prefoldin subunit alp 43.4 1.7E+02 0.0037 27.1 9.0 17 657-673 115-131 (140)
488 TIGR00606 rad50 rad50. This fa 43.3 1.5E+02 0.0032 38.4 11.4 32 658-689 472-503 (1311)
489 TIGR01000 bacteriocin_acc bact 43.3 51 0.0011 37.3 6.5 33 570-602 169-201 (457)
490 PRK14473 F0F1 ATP synthase sub 43.3 1.6E+02 0.0034 28.1 9.0 24 582-605 41-64 (164)
491 PRK15136 multidrug efflux syst 43.2 1.3E+02 0.0027 33.3 9.5 89 581-680 93-181 (390)
492 PF12128 DUF3584: Protein of u 43.1 1.2E+02 0.0026 38.9 10.3 119 569-687 610-729 (1201)
493 PF06210 DUF1003: Protein of u 43.0 1.4E+02 0.003 26.7 7.8 65 575-639 44-108 (108)
494 cd07676 F-BAR_FBP17 The F-BAR 42.7 2.2E+02 0.0047 29.5 10.5 119 566-687 100-229 (253)
495 cd07653 F-BAR_CIP4-like The F- 42.7 1.4E+02 0.003 30.6 9.2 78 566-643 98-182 (251)
496 PRK00409 recombination and DNA 42.6 1.2E+02 0.0025 37.0 9.6 73 569-641 516-589 (782)
497 cd00632 Prefoldin_beta Prefold 42.5 1.3E+02 0.0029 26.4 7.7 74 603-680 1-93 (105)
498 PF00435 Spectrin: Spectrin re 42.4 1E+02 0.0022 25.8 7.0 94 584-680 5-103 (105)
499 COG0823 TolB Periplasmic compo 42.4 3.3E+02 0.0072 30.5 12.6 157 173-349 218-375 (425)
500 PF04568 IATP: Mitochondrial A 42.2 1.2E+02 0.0025 26.8 7.0 49 591-639 52-100 (100)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.3e-42 Score=386.26 Aligned_cols=336 Identities=19% Similarity=0.286 Sum_probs=267.7
Q ss_pred CCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCC-C-CcCcEE
Q 005493 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-G-LLDDVQ 117 (694)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~-~-~~~~v~ 117 (694)
.+..|+.|+|+..+.........+++ .......+|..++..+.+|.||.+|++++++++||||||.... . ..+++|
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~y~~~~--~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGAYISLP--STPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEEEEecC--CChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEE
Confidence 36669999998765532222222232 0001248999998766789999999999999999999997532 2 447899
Q ss_pred EEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCc
Q 005493 118 VLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197 (694)
Q Consensus 118 ~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 197 (694)
+||+.+++|..++++.. .|.+++.+|++++++++||||||... ....+++|+||+.+++|+.+++.+..|.+
T Consensus 197 ~yD~~~~~W~~~~~~g~-------~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 197 VFDLETRTWSISPATGD-------VPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred EEECCCCEEEeCCCCCC-------CCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 99999999998765311 12224568999999999999999864 34578999999999999999865555899
Q ss_pred ceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeE
Q 005493 198 RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (694)
Q Consensus 198 R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv 277 (694)
|+.|+++.++++||||||.+.. ..++++++||+.+++|+.++..+.+|.+|.+|++++++++ +||+||.+.. .++++
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk-iyviGG~~g~-~~~dv 345 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK-VWVVYGFNGC-EVDDV 345 (470)
T ss_pred ccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc-EEEEECCCCC-ccCce
Confidence 9999999999999999999765 3578999999999999999876778899999999999988 9999998653 46899
Q ss_pred EEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCC---------CCCcCeEEEEECCCCcEEEeecCCC--C
Q 005493 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSPS--S 346 (694)
Q Consensus 278 ~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~---------~~~~~~v~~yd~~t~~W~~l~~~~~--~ 346 (694)
++||+.+++|+.++..+..|.+|..|++++++++|||+||... ....+++|+||+.+++|+.+...+. .
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~ 425 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEE 425 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCC
Confidence 9999999999999887778899999999999999999999753 1245789999999999999875432 3
Q ss_pred CCCCCcCcEEEEEeecCCcEEEEEcCCCC--CCCCcEEEEECcc
Q 005493 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 388 (694)
Q Consensus 347 ~p~~r~~~s~~~v~~~~~~~i~v~GG~~~--~~~~~v~~~di~~ 388 (694)
.|.+|..++++.....+++.||+|||+.. +..+++|+|++++
T Consensus 426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 46677666654443344557999999964 4489999998764
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.6e-40 Score=358.92 Aligned_cols=305 Identities=21% Similarity=0.367 Sum_probs=244.2
Q ss_pred CCCceEEeecc-CCCCCCccceEEEEECCEEEEEcCCCCC--CCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCcc
Q 005493 72 NSENWMVLSIA-GDKPIPRFNHAAAVIGNKMIVVGGESGN--GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR 148 (694)
Q Consensus 72 ~t~~W~~l~~~-~~~P~~R~~hs~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~ 148 (694)
....|..+... +.+|.||.+|++++++++|||+||.... ...+++++||+.+++|..++++.. .+.+.+.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-------~p~~~~~ 77 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-------VPRISCL 77 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-------CCCCccC
Confidence 56779999763 4579999999999999999999998532 345899999999999999887410 1112345
Q ss_pred ceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeec--CCCCCcceeeEEEEECCeEEEEccccCCC-----c
Q 005493 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR-----R 221 (694)
Q Consensus 149 ~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~R~~~~~~~~~~~lyv~GG~~~~~-----~ 221 (694)
+|++++++++||+|||.... ...+++++||+.+++|+.+++. ...|.+|..|++++++++||||||.+... .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence 78999999999999998643 3567999999999999988742 12388999999999999999999986432 2
Q ss_pred cccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC--------CCCCeEEEEEcCCCcEEEeecc
Q 005493 222 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS--------KTLNDLYSLDFETMIWTRIKIR 293 (694)
Q Consensus 222 ~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~--------~~~~dv~~yd~~t~~W~~l~~~ 293 (694)
.++++++||+.+++|+.++..+..|.+|.+|++++++++ |||+||.... ...+++++||+.+++|+.+...
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 357899999999999999866666789999999999998 9999986421 2367899999999999999877
Q ss_pred CCCCCCCcceEEEEECCEEEEEcCCCC---------CCCcCeEEEEECCCCcEEEeecCC-CCCCCCCcCcEEEEEeecC
Q 005493 294 GFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSP-SSSVTSNKGFTLVLVQHKE 363 (694)
Q Consensus 294 ~~~p~~R~~~sav~~~~~iyV~GG~~~---------~~~~~~v~~yd~~t~~W~~l~~~~-~~~p~~r~~~s~~~v~~~~ 363 (694)
+..|.+|..|++++++++|||+||... ....+++|+||+.+++|+.+.... ...|..+..++++.+. +
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~--~ 313 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY--G 313 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccC--C
Confidence 777999999999999999999999742 233579999999999999886422 1334455556666555 4
Q ss_pred CcEEEEEcCCCC--CCCCcEEEEECc
Q 005493 364 KDFLVAFGGIKK--EPSNQVEVLSIE 387 (694)
Q Consensus 364 ~~~i~v~GG~~~--~~~~~v~~~di~ 387 (694)
++.||||||+.. +..+++|+|++.
T Consensus 314 ~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 314 KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cceEEEEcCcCCCCccccceEEEecc
Confidence 468999999954 458999999864
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=324.15 Aligned_cols=337 Identities=26% Similarity=0.426 Sum_probs=277.4
Q ss_pred ceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCC-----cCcEEEEECCCCcEEEcccc--cccCCCCCCCCCCCc
Q 005493 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGL-----LDDVQVLNFDRFSWTAASSK--LYLSPSSLPLKIPAC 147 (694)
Q Consensus 75 ~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~-----~~~v~~yd~~t~~W~~~~~~--~~~~p~~~~~~~p~r 147 (694)
.|+.-- .--+.|..|+++.+|..||-|||+..... .-++.++|..+.+|+.+++. ....+...|.-+-.|
T Consensus 3 ~WTVHL---eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHL---EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEe---cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 465533 23446999999999999999999865432 34899999999999999983 222233333445578
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCC-Cccccce
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-RRKLNDL 226 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~~v 226 (694)
++|+.+.+++++|+.||.++....++.+++||+++++|......|-+|.+|.+|++|++++.+|||||+... ...++++
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence 999999999999999999988888999999999999999999999999999999999999999999999543 4678999
Q ss_pred EEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC---------CCCCeEEEEEcCCCcEEEeeccCCCC
Q 005493 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS---------KTLNDLYSLDFETMIWTRIKIRGFHP 297 (694)
Q Consensus 227 ~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~---------~~~~dv~~yd~~t~~W~~l~~~~~~p 297 (694)
+.+|+.|.+|+.+.+.|+.|.-|..|+++++++. +|||||++.. .+.+.+..+|+.++.|...+..+..|
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~-MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P 238 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGM-MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP 238 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccce-EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC
Confidence 9999999999999999999999999999999977 9999998532 45778999999999999998888889
Q ss_pred CCCcceEEEEECCEEEEEcCCCCC--CCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC
Q 005493 298 SPRAGCCGVLCGTKWYIAGGGSRK--KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 375 (694)
Q Consensus 298 ~~R~~~sav~~~~~iyV~GG~~~~--~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~ 375 (694)
.+|..|++.++++++|+|||+.+. .-.+++|+|||++..|+.+.. .+..|.+|..+++++.+ +++|+|||...
T Consensus 239 ~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~g----~kv~LFGGTsP 313 (392)
T KOG4693|consen 239 GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVSG----GKVYLFGGTSP 313 (392)
T ss_pred CcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec-cCCCCCcccceeEEEEC----CEEEEecCCCC
Confidence 999999999999999999999864 557899999999999999865 56778899999988887 78999999853
Q ss_pred CCCCcEEEEECccCCcCCCccccCCCCCCCcceecccCCCCccccccCCCCCCCCCChHHHHHHHHHHhhhcCCCccccc
Q 005493 376 EPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSE 455 (694)
Q Consensus 376 ~~~~~v~~~di~~~~w~~~w~~~~~~~~~~~~~fggs~~~~~l~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~l~~ 455 (694)
.+ .+..+. .-++| .+ .++.+.++||
T Consensus 314 ~~-----------------~~~~Sp--------------------t~~~G-----~~-------------~~~~LiD~SD 338 (392)
T KOG4693|consen 314 LP-----------------CHPLSP--------------------TNYNG-----MI-------------SPSGLIDLSD 338 (392)
T ss_pred CC-----------------CCCCCc--------------------cccCC-----CC-------------Cccccccccc
Confidence 22 111111 00011 00 3456778999
Q ss_pred cccCCCCCCCCCcccccccc
Q 005493 456 FALVDPNPISGNVSLGKQFQ 475 (694)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~ 475 (694)
.++||++|+|+++++..-++
T Consensus 339 LHvLDF~PsLKTLa~~~Vl~ 358 (392)
T KOG4693|consen 339 LHVLDFAPSLKTLAMQSVLM 358 (392)
T ss_pred ceeeecChhHHHHHHHHHHH
Confidence 99999999999888766553
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-39 Score=371.18 Aligned_cols=289 Identities=24% Similarity=0.357 Sum_probs=260.7
Q ss_pred ccccCCCCCCCCCCccccC--CCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECC
Q 005493 22 SAQAIRSPIRPPKRNSNPN--SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGN 99 (694)
Q Consensus 22 ~~~~s~~p~~~~~r~~~~~--~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~ 99 (694)
+..+..+|..+.+|+..+. .+.|+++||..+..........||+ .++.|..++ ++|.+|..++++++++
T Consensus 263 ~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~------~~~~w~~~a---~m~~~r~~~~~~~~~~ 333 (571)
T KOG4441|consen 263 HLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDP------KTNEWSSLA---PMPSPRCRVGVAVLNG 333 (571)
T ss_pred hhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecC------CcCcEeecC---CCCcccccccEEEECC
Confidence 3344555556677777773 4669999998876667777778998 899999998 8999999999999999
Q ss_pred EEEEEcCCC-CCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEE
Q 005493 100 KMIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (694)
Q Consensus 100 ~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~y 178 (694)
+||++||++ +...++++++||+.+++|..+++| ..+|.+++++++++.||++||.+ .....+++++|
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-----------~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~Y 401 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-----------NTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECY 401 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceeccCCc-----------cCccccceeEEECCEEEEEeccc-cccccccEEEe
Confidence 999999999 677899999999999999999985 44678899999999999999997 45578899999
Q ss_pred ECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEEC
Q 005493 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (694)
Q Consensus 179 d~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~ 258 (694)
|+.+++|..++ +|+.+|++|++++++++||++||.+.....++++++|||.+++|+.++ +|+.+|.++++++++
T Consensus 402 Dp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~ 475 (571)
T KOG4441|consen 402 DPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLN 475 (571)
T ss_pred cCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEEC
Confidence 99999999998 599999999999999999999999887668999999999999999998 999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEE
Q 005493 259 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (694)
Q Consensus 259 ~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~ 338 (694)
+. ||++||++....+..+++||+.+++|+.+.++ +.+|..++++++++++|++||+++....+.+.+||+.+++|+
T Consensus 476 ~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 476 GK-IYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CE-EEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 99 99999998877778899999999999999665 889999999999999999999999999999999999999999
Q ss_pred Eee
Q 005493 339 VAI 341 (694)
Q Consensus 339 ~l~ 341 (694)
...
T Consensus 552 ~~~ 554 (571)
T KOG4441|consen 552 EVT 554 (571)
T ss_pred eCC
Confidence 976
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4e-38 Score=358.13 Aligned_cols=279 Identities=24% Similarity=0.350 Sum_probs=245.7
Q ss_pred CCCCccceEEEEECCEEEEEcCCCC-CCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEc
Q 005493 85 KPIPRFNHAAAVIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVG 163 (694)
Q Consensus 85 ~P~~R~~hs~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~G 163 (694)
++.+|..... ...+.||++||... ....+.++.||+.++.|..++++ + .+|..++++++++.||++|
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m----------~-~~r~~~~~~~~~~~lYv~G 339 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM----------P-SPRCRVGVAVLNGKLYVVG 339 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC----------C-cccccccEEEECCEEEEEc
Confidence 3444443332 45578999999986 66789999999999999999984 3 4556899999999999999
Q ss_pred cccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCC
Q 005493 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG 243 (694)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g 243 (694)
|.+......+++|+||+.+++|..++ +|+.+|..+++++++|.||++||+++. ..++++++||+.+++|+.+.
T Consensus 340 G~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va--- 412 (571)
T KOG4441|consen 340 GYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVA--- 412 (571)
T ss_pred cccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccC---
Confidence 99754557789999999999999988 699999999999999999999999976 57899999999999999997
Q ss_pred CCCCCcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC
Q 005493 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (694)
Q Consensus 244 ~~P~~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~ 322 (694)
+|+.+|++|+++++++. ||++||.+... +++.+++|||.+++|+.++++ +.+|.++++++++++||++||+++..
T Consensus 413 ~m~~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 413 PMLTRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred CCCcceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCCCceeecCCc---ccccccceEEEECCEEEEECCccCCC
Confidence 89999999999999999 99999998776 999999999999999999876 89999999999999999999999866
Q ss_pred CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCCcCCC
Q 005493 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (694)
Q Consensus 323 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~w~~~ 394 (694)
....+.+||+.+++|+.+. .+..+|..++++++. +.||++||+++.. .+.+++|||.+++|...
T Consensus 489 ~~~~VE~ydp~~~~W~~v~----~m~~~rs~~g~~~~~----~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVA----PMTSPRSAVGVVVLG----GKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred ccceEEEEcCCCCceeEcc----cCccccccccEEEEC----CEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 6677999999999999985 344577788888887 7999999998765 99999999999998664
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.6e-36 Score=327.61 Aligned_cols=285 Identities=19% Similarity=0.275 Sum_probs=222.7
Q ss_pred ccccCCCeEEEecCCCCC-CCccccccCccccCCCCCCCCceEEeeccCCCCCC-ccceEEEEECCEEEEEcCCCCCCCc
Q 005493 36 NSNPNSECVAPSSNHADD-RDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIP-RFNHAAAVIGNKMIVVGGESGNGLL 113 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~-~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~-R~~hs~~~~~~~lyv~GG~~~~~~~ 113 (694)
+.+..++.||++||.... .........||+ .++.|+.+++.+..|.. +.+|++++++++||||||......+
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~------~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 100 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDF------NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREF 100 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEEC------CCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCcc
Confidence 444557889999997432 222344556777 88999998754444433 4589999999999999998877778
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC-----CCccEEEEEECCCCcEEEe
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-----SDRVSVWTFDTETECWSVV 188 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~ 188 (694)
+++++||+.+++|+.++++... ..+.+|.+|++++.+++||||||..... ...+++++||+.+++|..+
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~------~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEE------GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCC------CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC
Confidence 9999999999999998763110 1244678999999999999999986432 1346899999999999999
Q ss_pred eecCCCCCcceeeEEEEECCeEEEEccccCC-------CccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcE
Q 005493 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGK-------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN 261 (694)
Q Consensus 189 ~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~-------~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~ 261 (694)
+..+..|.+|.+|++++++++|||+||.... ....+++++||+.+++|+++...|.+|.+|..|++++++++
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~- 253 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKY- 253 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCE-
Confidence 8655567899999999999999999997521 12368899999999999999877889999999999999988
Q ss_pred EEEEcCCC---------CCCCCCeEEEEEcCCCcEEEeeccCCCCCC--CcceEEEEE--CCEEEEEcCCCCC-CCcCeE
Q 005493 262 LLIFGGSS---------KSKTLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLC--GTKWYIAGGGSRK-KRHAET 327 (694)
Q Consensus 262 lyv~GG~~---------~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~--R~~~sav~~--~~~iyV~GG~~~~-~~~~~v 327 (694)
||||||.. .....+++|+||+.+++|+.+...+.+|.| |..++++.+ +++|||+||.... ....++
T Consensus 254 iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~ 333 (341)
T PLN02153 254 IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDL 333 (341)
T ss_pred EEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccce
Confidence 99999973 123567999999999999999754444444 444444443 4589999998764 577899
Q ss_pred EEEECC
Q 005493 328 LIFDIL 333 (694)
Q Consensus 328 ~~yd~~ 333 (694)
|+|++.
T Consensus 334 ~~~~~~ 339 (341)
T PLN02153 334 YFYAVN 339 (341)
T ss_pred EEEecc
Confidence 999864
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.8e-36 Score=335.29 Aligned_cols=287 Identities=24% Similarity=0.338 Sum_probs=234.9
Q ss_pred cceEEEEECCEEEEEcCCCCCCCcCcE--EEEECCC----CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEc
Q 005493 90 FNHAAAVIGNKMIVVGGESGNGLLDDV--QVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVG 163 (694)
Q Consensus 90 ~~hs~~~~~~~lyv~GG~~~~~~~~~v--~~yd~~t----~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~G 163 (694)
.+...+..+++|+.|+|.... .++.+ +.+++.+ ++|..+.++. ..+.+|.+|++++++++||+||
T Consensus 112 ~g~~f~~~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~--------~~P~pR~~h~~~~~~~~iyv~G 182 (470)
T PLN02193 112 PGVKFVLQGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKG--------EGPGLRCSHGIAQVGNKIYSFG 182 (470)
T ss_pred CCCEEEEcCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCC--------CCCCCccccEEEEECCEEEEEC
Confidence 344445568999999998755 35554 4446645 7999988642 1244778999999999999999
Q ss_pred cccCCCC-CccEEEEEECCCCcEEEeeecCCCCC-cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEccc
Q 005493 164 GKTDSGS-DRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (694)
Q Consensus 164 G~~~~~~-~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~ 241 (694)
|...... ..+++|+||+.+++|..+++.+++|. +|.+|++++++++||||||.+.. ..++++|+||+.+++|+.+.+
T Consensus 183 G~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~ 261 (470)
T PLN02193 183 GEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTP 261 (470)
T ss_pred CcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCc
Confidence 9854333 34689999999999998876666665 46788999999999999998765 468999999999999999986
Q ss_pred CCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC
Q 005493 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (694)
Q Consensus 242 ~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~ 321 (694)
.+..|.+|+.|++++++++ ||||||.+....++++++||+.+++|+.++..+.+|.+|..|++++++++|||+||..+.
T Consensus 262 ~~~~P~~R~~h~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 262 VEEGPTPRSFHSMAADEEN-VYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred CCCCCCCccceEEEEECCE-EEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC
Confidence 5556999999999999888 999999987778899999999999999998766678899999999999999999998654
Q ss_pred CCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC----------CCCCcEEEEECccCCc
Q 005493 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNES 391 (694)
Q Consensus 322 ~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~----------~~~~~v~~~di~~~~w 391 (694)
..+++++||+.+++|+.++.. ...|.+|..|+++++. +.||||||... ...+++|+||+.+++|
T Consensus 341 -~~~dv~~yD~~t~~W~~~~~~-g~~P~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 341 -EVDDVHYYDPVQDKWTQVETF-GVRPSERSVFASAAVG----KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred -ccCceEEEECCCCEEEEeccC-CCCCCCcceeEEEEEC----CEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 368899999999999998642 2457789999998886 68999999853 1357899999999998
Q ss_pred CC
Q 005493 392 SM 393 (694)
Q Consensus 392 ~~ 393 (694)
..
T Consensus 415 ~~ 416 (470)
T PLN02193 415 ER 416 (470)
T ss_pred EE
Confidence 64
No 8
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=297.14 Aligned_cols=275 Identities=24% Similarity=0.420 Sum_probs=233.5
Q ss_pred CCCccccCCCeEEEecCCCCCCC--ccccccCccccCCCCCCCCceEEeecc----------CCCCCCccceEEEEECCE
Q 005493 33 PKRNSNPNSECVAPSSNHADDRD--CECTIAGPEVSNGTSGNSENWMVLSIA----------GDKPIPRFNHAAAVIGNK 100 (694)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~--~~~~~~~~d~~~~~~~~t~~W~~l~~~----------~~~P~~R~~hs~~~~~~~ 100 (694)
--|+++++|..||.|||.-.+-+ .....++--++ ..+.+|+.+++. +-.|..|+||+++.++++
T Consensus 15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lN----a~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLN----AENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred ccceeeeecceEEecCCcccccccccCCcceeEEee----ccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 33588999999999999544333 33333322222 288999999751 124567999999999999
Q ss_pred EEEEcCCCC-CCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCC-CccEEEEE
Q 005493 101 MIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS-DRVSVWTF 178 (694)
Q Consensus 101 lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~-~~~~v~~y 178 (694)
+||+||.++ .+..|.++.|||+++.|......+ .-+++|.+|++|++++.+|+|||+..... ..++++.+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G--------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG--------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceee--------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 999999976 567899999999999999877643 33568899999999999999999976433 46789999
Q ss_pred ECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCC--------CccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 179 d~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~--------~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
|+.|-+|+.+.+.|+.|.-|..|+++++++.+|||||+... ..+.+.+..+|+.|..|...+..+-.|.+|.
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999999999999999999999999999999998643 2467889999999999999988888999999
Q ss_pred eeEEEEECCcEEEEEcCCCC--CCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCC
Q 005493 251 NHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~--~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~ 320 (694)
.|++.+++++ +|||||+.+ ..-+|++|.||+.+..|..+...|.-|.+|..+++++.++++|+|||.+-
T Consensus 243 SHS~fvYng~-~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 243 SHSTFVYNGK-MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccceEEEcce-EEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999 999999976 45689999999999999999999999999999999999999999999653
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=341.96 Aligned_cols=264 Identities=17% Similarity=0.235 Sum_probs=222.6
Q ss_pred CeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCC-CCCCcCcEEEEE
Q 005493 42 ECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES-GNGLLDDVQVLN 120 (694)
Q Consensus 42 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~-~~~~~~~v~~yd 120 (694)
..+++.||... . .......|++ .++.|..++ ++|.+|.+|++++++++|||+||.. .....+++++||
T Consensus 258 ~~l~~~~g~~~-~-~~~~v~~yd~------~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd 326 (557)
T PHA02713 258 LCLVCHDTKYN-V-CNPCILVYNI------NTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326 (557)
T ss_pred eEEEEecCccc-c-CCCCEEEEeC------CCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEE
Confidence 34666666321 1 1123345777 899999998 7899999999999999999999975 344678999999
Q ss_pred CCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCccee
Q 005493 121 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (694)
Q Consensus 121 ~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~ 200 (694)
+.++.|..++++ +.+|..+++++++++||++||... ....+++++||+.+++|..++ +||.+|.+
T Consensus 327 ~~~n~W~~~~~m-----------~~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~ 391 (557)
T PHA02713 327 IENKIHVELPPM-----------IKNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLP---DMPIALSS 391 (557)
T ss_pred CCCCeEeeCCCC-----------cchhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCeEEECC---CCCccccc
Confidence 999999999874 346678999999999999999854 335678999999999999988 59999999
Q ss_pred eEEEEECCeEEEEccccCCC-----------------ccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEE
Q 005493 201 HTVVRASSVLILFGGEDGKR-----------------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLL 263 (694)
Q Consensus 201 ~~~~~~~~~lyv~GG~~~~~-----------------~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~ly 263 (694)
+++++++++||++||.+... ..++++++|||.+++|+.++ +||.+|..+++++++++ ||
T Consensus 392 ~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~-IY 467 (557)
T PHA02713 392 YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDD-IY 467 (557)
T ss_pred ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCE-EE
Confidence 99999999999999986431 13678999999999999997 89999999999999999 99
Q ss_pred EEcCCCCCC-CCCeEEEEEcCC-CcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 264 IFGGSSKSK-TLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 264 v~GG~~~~~-~~~dv~~yd~~t-~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
|+||.+... ..+.+++||+.+ ++|+.++++ |.+|..+++++++++||++||+++. ..+.+||+.+++|+.+.
T Consensus 468 v~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 468 VVCDIKDEKNVKTCIFRYNTNTYNGWELITTT---ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred EEeCCCCCCccceeEEEecCCCCCCeeEcccc---CcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchh
Confidence 999986433 335689999999 899999765 8999999999999999999998863 36889999999999876
No 10
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=331.78 Aligned_cols=311 Identities=31% Similarity=0.503 Sum_probs=268.2
Q ss_pred ccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCc--EEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE
Q 005493 81 IAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK 158 (694)
Q Consensus 81 ~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~ 158 (694)
+.+..|.+|.+|+++.+++++|||||........+ +|+||..+..|......+ ..++++.+|++++++++
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g--------~~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG--------DEPSPRYGHSLSAVGDK 124 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC--------CCCCcccceeEEEECCe
Confidence 45678999999999999999999999876665555 999999999999887753 23468899999999999
Q ss_pred EEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEE
Q 005493 159 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (694)
Q Consensus 159 Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 238 (694)
||+|||........++++.||+.|++|..+.+.+++|++|.+|+++++++++|||||.+......+++|+||+.+.+|.+
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccccee
Confidence 99999998656678899999999999999999999999999999999999999999999887689999999999999999
Q ss_pred cccCCCCCCCcceeEEEEECCcEEEEEcCCC-CCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcC
Q 005493 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (694)
Q Consensus 239 l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~-~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG 317 (694)
+.+.|..|.||++|++++++++ ++||||.. ...+++|+|.||+.+..|..+...+..|.+|++|++++.+++++|+||
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred cccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcC
Confidence 9999999999999999999999 66666665 788999999999999999999988999999999999999999999999
Q ss_pred CCCC-C-CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC--CCCCcEEEEECccCCcCC
Q 005493 318 GSRK-K-RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKNESSM 393 (694)
Q Consensus 318 ~~~~-~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~--~~~~~v~~~di~~~~w~~ 393 (694)
.... . .+.++|.||+.+..|..+.......|.++..+....+...+...+.++||... ...+.++...+....-..
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKN 363 (482)
T ss_pred CcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCC
Confidence 8874 3 68899999999999999876543567788899988888777777888888543 346666666665555444
Q ss_pred CccccCC
Q 005493 394 GRRSTPN 400 (694)
Q Consensus 394 ~w~~~~~ 400 (694)
.|.....
T Consensus 364 ~~~~~~~ 370 (482)
T KOG0379|consen 364 EVQEPGT 370 (482)
T ss_pred ccccccc
Confidence 4554443
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-36 Score=339.88 Aligned_cols=262 Identities=11% Similarity=0.146 Sum_probs=220.5
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd 179 (694)
.+++.||... .....+++||+.++.|..++++ |. ++..+++++++++||++||........+++++||
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~m----------p~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd 326 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTI----------PN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCC----------Cc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEE
Confidence 3555665321 1335789999999999999873 33 4567889999999999999854344568999999
Q ss_pred CCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECC
Q 005493 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 180 ~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+.+++|..++ +||.+|..+++++++++||++||.++. ..++++++||+.+++|+.++ +||.+|.+++++++++
T Consensus 327 ~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 327 IENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQ 399 (557)
T ss_pred CCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECC
Confidence 9999999988 699999999999999999999998754 35788999999999999987 8999999999999998
Q ss_pred cEEEEEcCCCCC------------------CCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC
Q 005493 260 KNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (694)
Q Consensus 260 ~~lyv~GG~~~~------------------~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~ 321 (694)
+ ||++||.+.. ..++.+++||+.+++|+.++++ |.+|..+++++++++|||+||.+..
T Consensus 400 ~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~ 475 (557)
T PHA02713 400 Y-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE 475 (557)
T ss_pred E-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC
Confidence 8 9999998632 1367899999999999999765 8899999999999999999998754
Q ss_pred CCc-CeEEEEECCC-CcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCCcCCC
Q 005493 322 KRH-AETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (694)
Q Consensus 322 ~~~-~~v~~yd~~t-~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~w~~~ 394 (694)
... +.+++|||.+ ++|+.++ +.|.+|..++++++. ++||++||+++. ..+++||+.+++|+..
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~----~m~~~r~~~~~~~~~----~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELIT----TTESRLSALHTILHD----NTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CccceeEEEecCCCCCCeeEcc----ccCcccccceeEEEC----CEEEEEeeecce--eehhhcCcccccccch
Confidence 333 4579999999 8999986 346688899999997 799999999874 4799999999998764
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.9e-34 Score=307.37 Aligned_cols=274 Identities=17% Similarity=0.224 Sum_probs=211.4
Q ss_pred CCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEEC--CCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 005493 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (694)
Q Consensus 84 ~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv 161 (694)
++|.+|..+++++++++|||+||... +++++||+ .+++|..+++ ++..+|..+++++++++||+
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIAD----------FPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCC----------CCCCCcccceEEEECCEEEE
Confidence 68899999999899999999999742 67899996 5689999987 34346778999999999999
Q ss_pred EccccCCC-----CCccEEEEEECCCCcEEEeeecCCCCCcceeeEEE-EECCeEEEEccccCCC---------------
Q 005493 162 VGGKTDSG-----SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKR--------------- 220 (694)
Q Consensus 162 ~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~-~~~~~lyv~GG~~~~~--------------- 220 (694)
+||..... ..++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 99985322 136789999999999999873 467888888776 7899999999986320
Q ss_pred ------------------ccccceEEeeCCCCcEEEcccCCCCCC-CcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEE
Q 005493 221 ------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSL 280 (694)
Q Consensus 221 ------------------~~~~~v~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~y 280 (694)
..++++++||+.+++|+.+. ++|. +|.++++++++++ |||+||..... ...+++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEE
Confidence 02478999999999999997 7885 6899999999988 99999985433 23456666
Q ss_pred E--cCCCcEEEeeccCCC----CCCCcceEEEEECCEEEEEcCCCCCC-----------------CcCeEEEEECCCCcE
Q 005493 281 D--FETMIWTRIKIRGFH----PSPRAGCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEW 337 (694)
Q Consensus 281 d--~~t~~W~~l~~~~~~----p~~R~~~sav~~~~~iyV~GG~~~~~-----------------~~~~v~~yd~~t~~W 337 (694)
| +++++|+.++.++.+ +.++.+|++++++++|||+||..... ....+.+||+.+++|
T Consensus 223 ~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 223 LFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred EecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 5 467899999876321 11234666788899999999975211 123578999999999
Q ss_pred EEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC--CCCcEEEEE
Q 005493 338 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLS 385 (694)
Q Consensus 338 ~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~--~~~~v~~~d 385 (694)
+.+.. .|.++..++++++. +.|||+||.... ..++|+.+.
T Consensus 303 ~~~~~----lp~~~~~~~~~~~~----~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGK----LPQGLAYGVSVSWN----NGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCC----CCCCceeeEEEEcC----CEEEEEeccCCCCCEeeeEEEEE
Confidence 98863 34567677666665 799999998653 377887665
No 13
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=322.15 Aligned_cols=245 Identities=18% Similarity=0.291 Sum_probs=210.7
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCC-CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccce
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~ 150 (694)
....|..++ +.|. +..|++++++++|||+||..... ..+++++||+.+++|..++++ +.+|.+|
T Consensus 272 ~~~~~~~~~---~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----------~~~R~~~ 336 (534)
T PHA03098 272 PLSEINTII---DIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-----------IYPRKNP 336 (534)
T ss_pred hhhhccccc---Cccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-----------Ccccccc
Confidence 577888885 4443 45578899999999999987544 567999999999999998763 3356789
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEee
Q 005493 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 230 (694)
++++++++||++||... ....+++++||+.+++|+.++ +||.+|++|+++.++++||++||.......++++++||
T Consensus 337 ~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred eEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 99999999999999863 345678999999999999987 59999999999999999999999866555689999999
Q ss_pred CCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCC---CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE
Q 005493 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (694)
Q Consensus 231 ~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~---~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~ 307 (694)
+.+++|+.+. ++|.+|.+|+++++++. |||+||.+... .++.+++||+.+++|+.++.+ |.+|.+++++.
T Consensus 413 ~~t~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~ 485 (534)
T PHA03098 413 LNTNKWSKGS---PLPISHYGGCAIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCI 485 (534)
T ss_pred CCCCeeeecC---CCCccccCceEEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCC---CcccccceEEE
Confidence 9999999987 89999999999999988 99999986432 367799999999999999654 77899999999
Q ss_pred ECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeec
Q 005493 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (694)
Q Consensus 308 ~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~ 342 (694)
++++|||+||.......+++++||+.+++|..++.
T Consensus 486 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 486 FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 99999999998876667889999999999998864
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5.3e-33 Score=298.07 Aligned_cols=264 Identities=19% Similarity=0.344 Sum_probs=205.5
Q ss_pred CCccceEEEEECCEEEEEcCCCCCC----------CcCcEEEEE-CC-CCcEEEcccccccCCCCCCCCCCCccceEEEE
Q 005493 87 IPRFNHAAAVIGNKMIVVGGESGNG----------LLDDVQVLN-FD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLIS 154 (694)
Q Consensus 87 ~~R~~hs~~~~~~~lyv~GG~~~~~----------~~~~v~~yd-~~-t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~ 154 (694)
..+.++.++++++.|||+||.+... .++++++|+ +. +..|..+++ +|. +|..+++++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~----------lp~-~r~~~~~~~ 70 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ----------LPY-EAAYGASVS 70 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc----------CCc-cccceEEEE
Confidence 4678899999999999999986542 356888886 33 237999887 344 445567788
Q ss_pred ECCEEEEEccccCCCCCccEEEEEECCCCcEE-EeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCC
Q 005493 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (694)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 233 (694)
++++||++||... ....+++|+||+.+++|. .....++||.+|..|++++++++|||+||.... ..++++++||+.+
T Consensus 71 ~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~ 148 (323)
T TIGR03548 71 VENGIYYIGGSNS-SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLET 148 (323)
T ss_pred ECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCC
Confidence 8999999999864 345689999999999983 112223799999999999999999999998543 4579999999999
Q ss_pred CcEEEcccCCCCC-CCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCC--CCCCCcceEEEE-EC
Q 005493 234 LTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSPRAGCCGVL-CG 309 (694)
Q Consensus 234 ~~W~~l~~~g~~P-~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~--~p~~R~~~sav~-~~ 309 (694)
++|+.++ ++| .+|..|++++++++ |||+||.+.. ...++++||+++++|+.++.++. .|.++..+++++ .+
T Consensus 149 ~~W~~~~---~~p~~~r~~~~~~~~~~~-iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~ 223 (323)
T TIGR03548 149 QEWFELP---DFPGEPRVQPVCVKLQNE-LYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE 223 (323)
T ss_pred CCeeECC---CCCCCCCCcceEEEECCE-EEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECC
Confidence 9999987 666 47999999899988 9999998653 34678999999999999987532 234444555444 47
Q ss_pred CEEEEEcCCCCCC--------------------------------CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEE
Q 005493 310 TKWYIAGGGSRKK--------------------------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (694)
Q Consensus 310 ~~iyV~GG~~~~~--------------------------------~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~ 357 (694)
++|||+||.+... ..+++++||+.+++|+.++..| ..+|.+++++
T Consensus 224 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~~~~ 300 (323)
T TIGR03548 224 SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGAALL 300 (323)
T ss_pred CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCchheE
Confidence 9999999986421 1367999999999999986322 2478888888
Q ss_pred EEeecCCcEEEEEcCCCC
Q 005493 358 LVQHKEKDFLVAFGGIKK 375 (694)
Q Consensus 358 ~v~~~~~~~i~v~GG~~~ 375 (694)
.+. +.||++||...
T Consensus 301 ~~~----~~iyv~GG~~~ 314 (323)
T TIGR03548 301 LTG----NNIFSINGELK 314 (323)
T ss_pred EEC----CEEEEEecccc
Confidence 886 68999999743
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.9e-33 Score=303.61 Aligned_cols=285 Identities=18% Similarity=0.260 Sum_probs=218.6
Q ss_pred CCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCCccce
Q 005493 73 SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGH 150 (694)
Q Consensus 73 t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~r~~~ 150 (694)
.-.|+.++ ++|.+|..+++++++++|||+||... +.+++||+. ++.|..+++ ++.++|.++
T Consensus 16 ~~~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~r~~~ 78 (376)
T PRK14131 16 AANAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAA----------FPGGPREQA 78 (376)
T ss_pred ceecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCc----------CCCCCcccc
Confidence 34566676 88999998899999999999999743 458999987 478999887 444567889
Q ss_pred EEEEECCEEEEEccccC-C----CCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCC----
Q 005493 151 SLISWGKKVLLVGGKTD-S----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR---- 220 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~-~----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~---- 220 (694)
+++.++++|||+||... . ....+++|+||+.+++|+.++. .+|.++.+|+++. .+++||++||.+...
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 99999999999999864 1 1235789999999999999874 3577888888777 799999999985310
Q ss_pred -----------------------------ccccceEEeeCCCCcEEEcccCCCCCC-CcceeEEEEECCcEEEEEcCCCC
Q 005493 221 -----------------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSK 270 (694)
Q Consensus 221 -----------------------------~~~~~v~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~~lyv~GG~~~ 270 (694)
...+++++||+.+++|+.+. ++|. +|.+|+++.++++ |||+||...
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~-iYv~GG~~~ 232 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNK-LWLINGEIK 232 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCE-EEEEeeeEC
Confidence 12478999999999999986 7885 7888998888888 999999743
Q ss_pred C-CCCCeEE--EEEcCCCcEEEeeccCCCCCCCc--------ceEEEEECCEEEEEcCCCCCC-----------------
Q 005493 271 S-KTLNDLY--SLDFETMIWTRIKIRGFHPSPRA--------GCCGVLCGTKWYIAGGGSRKK----------------- 322 (694)
Q Consensus 271 ~-~~~~dv~--~yd~~t~~W~~l~~~~~~p~~R~--------~~sav~~~~~iyV~GG~~~~~----------------- 322 (694)
. ....++| .||+++++|+.++.+ |.+|. ++.+++++++|||+||.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T PRK14131 233 PGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK 309 (376)
T ss_pred CCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc
Confidence 2 2234444 557789999999876 44432 333567899999999975321
Q ss_pred CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC--CCCCcEEEEECccCCc
Q 005493 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKNES 391 (694)
Q Consensus 323 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~--~~~~~v~~~di~~~~w 391 (694)
....+.+||+.+++|+.+. ..|.+|..++++.+. +.|||+||... ...++|++|.+..+.+
T Consensus 310 ~~~~~e~yd~~~~~W~~~~----~lp~~r~~~~av~~~----~~iyv~GG~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 310 KSWSDEIYALVNGKWQKVG----ELPQGLAYGVSVSWN----NGVLLIGGETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred ceeehheEEecCCcccccC----cCCCCccceEEEEeC----CEEEEEcCCCCCCcEeeeEEEEEEcCCEE
Confidence 0123568999999999876 345677788777776 78999999854 3488999999886653
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.6e-32 Score=297.20 Aligned_cols=264 Identities=20% Similarity=0.286 Sum_probs=201.6
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCC-CCccceEEEEECCEEEEEcCCCCCC---
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGNG--- 111 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~lyv~GG~~~~~--- 111 (694)
..+..++.||++||... ....+|++. ..++.|..++ ++| .+|.+|++++++++|||+||.....
T Consensus 12 ~~~~~~~~vyv~GG~~~-----~~~~~~d~~----~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAG-----TSWYKLDLK----KPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred eEEEECCEEEEEccccC-----CeeEEEECC----CCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 33345788999999642 122334431 1567899998 788 5899999999999999999985322
Q ss_pred ---CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEccccCCC------------------
Q 005493 112 ---LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSG------------------ 169 (694)
Q Consensus 112 ---~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v-~~~~~Iyv~GG~~~~~------------------ 169 (694)
.++++++||+.+++|+.++. ..+..+.+++++ +++++||++||.....
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~----------~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDT----------RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred cceecccEEEEECCCCEEecCCC----------CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 47899999999999999874 123345667766 6899999999985310
Q ss_pred ---------------CCccEEEEEECCCCcEEEeeecCCCCC-cceeeEEEEECCeEEEEccccCCCccccceEEee--C
Q 005493 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD--L 231 (694)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd--~ 231 (694)
...+++++||+.+++|+.++ +||. +|.+++++.++++|||+||.........+++.|| +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence 01368999999999999987 5885 6899999999999999999865433345566665 4
Q ss_pred CCCcEEEcccCCCCCCCc-------ceeEEEEECCcEEEEEcCCCCCC-----------------CCCeEEEEEcCCCcE
Q 005493 232 KSLTWLPLHCTGTGPSPR-------SNHVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMIW 287 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R-------~~hs~~~~~~~~lyv~GG~~~~~-----------------~~~dv~~yd~~t~~W 287 (694)
.+++|+.+. +||.+| .+|++++++++ |||+||..... ....+++||+++++|
T Consensus 227 ~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 227 GKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGV-LLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred CCceeeecC---CCCCCCCCccccccEEeeeEECCE-EEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 677999987 676654 46667788888 99999975211 124689999999999
Q ss_pred EEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEE
Q 005493 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD 331 (694)
Q Consensus 288 ~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd 331 (694)
+.+..+ |.+|..+++++++++|||+||.+.. ..+++++.|.
T Consensus 303 ~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 999765 8889999888899999999998753 5567777664
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=312.91 Aligned_cols=262 Identities=18% Similarity=0.215 Sum_probs=217.7
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd 179 (694)
.+++.||.. .....+..|++.+.+|..+++ .+.+..|+++++++.||++||........+++++||
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 317 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTIID------------IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYD 317 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhcccccC------------ccccccceEEEECCEEEEECCCcCCCCeeccEEEEe
Confidence 455556544 234456678888889988765 223445789999999999999976555667999999
Q ss_pred CCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECC
Q 005493 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 180 ~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+.+++|..++ +||.+|.+|+++.++++||++||.+.. ...+++++||+.+++|+.++ ++|.+|++|+++++++
T Consensus 318 ~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 318 TKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNN 390 (534)
T ss_pred CCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECC
Confidence 9999999887 699999999999999999999999754 46789999999999999987 8999999999999998
Q ss_pred cEEEEEcCCCC-CCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC---CcCeEEEEECCCC
Q 005493 260 KNLLIFGGSSK-SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLIFDILKG 335 (694)
Q Consensus 260 ~~lyv~GG~~~-~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~---~~~~v~~yd~~t~ 335 (694)
+ |||+||... ...++++++||+.+++|+.++++ |.+|.+|+++.++++|||+||.+... ..+.+++||+.++
T Consensus 391 ~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 391 L-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred E-EEEECCcCCCCcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 8 999999743 34578999999999999998654 88999999999999999999976543 2567999999999
Q ss_pred cEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCCcCCC
Q 005493 336 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (694)
Q Consensus 336 ~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~w~~~ 394 (694)
+|+.++. .+.+|.+++++.+. +.||++||..... .+.+++||+.++.|...
T Consensus 467 ~W~~~~~----~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 467 KWTELSS----LNFPRINASLCIFN----NKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred ceeeCCC----CCcccccceEEEEC----CEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 9999863 34567788877764 6899999997655 78999999999998654
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=6.8e-32 Score=295.22 Aligned_cols=272 Identities=20% Similarity=0.271 Sum_probs=206.8
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCC-CCccceEEEEECCEEEEEcCCCC-----
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESG----- 109 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~lyv~GG~~~----- 109 (694)
+....++.||++||.... ...+|++. ..++.|..++ ++| .+|.++++++++++|||+||...
T Consensus 33 ~~~~~~~~iyv~gG~~~~-----~~~~~d~~----~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~ 100 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGT-----SWYKLDLN----APSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEG 100 (376)
T ss_pred eEEEECCEEEEEeCCCCC-----eEEEEECC----CCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCC
Confidence 344447889999996321 12345541 1357899997 566 58999999999999999999764
Q ss_pred -CCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEccccCCC------------------
Q 005493 110 -NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG------------------ 169 (694)
Q Consensus 110 -~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~-~~~~Iyv~GG~~~~~------------------ 169 (694)
...++++++||+.+++|+.+++. .+..+.+|++++ .+++||++||.....
T Consensus 101 ~~~~~~~v~~YD~~~n~W~~~~~~----------~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~ 170 (376)
T PRK14131 101 SPQVFDDVYKYDPKTNSWQKLDTR----------SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170 (376)
T ss_pred ceeEcccEEEEeCCCCEEEeCCCC----------CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence 13468999999999999998752 233445777776 899999999975310
Q ss_pred ---------------CCccEEEEEECCCCcEEEeeecCCCCC-cceeeEEEEECCeEEEEccccCCCccccceE--EeeC
Q 005493 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLH--MFDL 231 (694)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~--~yd~ 231 (694)
...+++++||+.+++|+.++ ++|. +|.+|+++.++++|||+||....+....++| .||+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 02468999999999999887 5785 7888999999999999999865433345555 4577
Q ss_pred CCCcEEEcccCCCCCCCcc--------eeEEEEECCcEEEEEcCCCCCC-----------------CCCeEEEEEcCCCc
Q 005493 232 KSLTWLPLHCTGTGPSPRS--------NHVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMI 286 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~--------~hs~~~~~~~~lyv~GG~~~~~-----------------~~~dv~~yd~~t~~ 286 (694)
.+++|..+. ++|.+|. ++.+++++++ |||+||.+... ....+++||+++++
T Consensus 248 ~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 323 (376)
T PRK14131 248 NNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGV-LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK 323 (376)
T ss_pred CCcceeecC---CCCCCCcCCcCCccceEeceeECCE-EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc
Confidence 899999987 7777664 2335667887 99999975321 11346799999999
Q ss_pred EEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEECCCCcEEE
Q 005493 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDILKGEWSV 339 (694)
Q Consensus 287 W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd~~t~~W~~ 339 (694)
|+.+.. +|.+|..+++++++++|||+||.... ...+++++|++..+.|..
T Consensus 324 W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 324 WQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ccccCc---CCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 998865 48899999999999999999997643 567899999999887764
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-31 Score=287.72 Aligned_cols=259 Identities=16% Similarity=0.207 Sum_probs=198.3
Q ss_pred cCCCeEEEecCCCCCC-------CccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCC
Q 005493 39 PNSECVAPSSNHADDR-------DCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG 111 (694)
Q Consensus 39 ~~~~~i~~~GG~~~~~-------~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~ 111 (694)
..++.||++||..... ...+..++|.+. ....+..|..++ ++|.+|..+++++++++||++||.....
T Consensus 11 ~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~--~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~ 85 (323)
T TIGR03548 11 IIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAK--DENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSE 85 (323)
T ss_pred EECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEe--cCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCC
Confidence 3467799999954321 112223444321 001234799887 7899999888999999999999998777
Q ss_pred CcCcEEEEECCCCcE----EEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEE
Q 005493 112 LLDDVQVLNFDRFSW----TAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSV 187 (694)
Q Consensus 112 ~~~~v~~yd~~t~~W----~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 187 (694)
.++++++||+.++.| ..+++ +| .++..|++++++++||++||... ....+++++||+.+++|+.
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~----------lp-~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGN----------LP-FTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCC----------CC-cCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCCCeeE
Confidence 789999999999998 45554 33 34567899999999999999753 3457899999999999999
Q ss_pred eeecCCCC-CcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccC--CCCCCCcceeEEEEECCcEEEE
Q 005493 188 VEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPSPRSNHVAALYDDKNLLI 264 (694)
Q Consensus 188 ~~~~g~~p-~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~~~lyv 264 (694)
++ +|| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.+... +..|.++..++.+++.+..|||
T Consensus 154 ~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv 228 (323)
T TIGR03548 154 LP---DFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLC 228 (323)
T ss_pred CC---CCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEE
Confidence 87 476 479999999999999999998754 356799999999999998743 2345555556655565444999
Q ss_pred EcCCCCCC--------------------------------CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEE
Q 005493 265 FGGSSKSK--------------------------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (694)
Q Consensus 265 ~GG~~~~~--------------------------------~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~i 312 (694)
+||.+... +.+++++||+.+++|+.++.+ +..+|.+++++.++++|
T Consensus 229 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~i 306 (323)
T TIGR03548 229 IGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNI 306 (323)
T ss_pred ECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCchheEEECCEE
Confidence 99986421 246899999999999999754 23589999999999999
Q ss_pred EEEcCCCCC
Q 005493 313 YIAGGGSRK 321 (694)
Q Consensus 313 yV~GG~~~~ 321 (694)
|++||....
T Consensus 307 yv~GG~~~p 315 (323)
T TIGR03548 307 FSINGELKP 315 (323)
T ss_pred EEEeccccC
Confidence 999997653
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.5e-32 Score=287.87 Aligned_cols=304 Identities=25% Similarity=0.484 Sum_probs=251.7
Q ss_pred CCCceEEeec-cCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccce
Q 005493 72 NSENWMVLSI-AGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (694)
Q Consensus 72 ~t~~W~~l~~-~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~ 150 (694)
.--+|..+.. .|+.|.||.||.++++..-|+||||-+ .+..+.+.+||..++.|..-+.-+ .-+|++..|
T Consensus 15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrG--------DiPpgcAA~ 85 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRG--------DIPPGCAAF 85 (830)
T ss_pred cccceEEEecccCCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcC--------CCCCchhhc
Confidence 3467998865 678999999999999999999999943 568899999999999998766542 235567789
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeee----cCCCCCcceeeEEEEECCeEEEEccccCC-------
Q 005493 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA----KGDIPVARSGHTVVRASSVLILFGGEDGK------- 219 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~----~g~~p~~R~~~~~~~~~~~lyv~GG~~~~------- 219 (694)
.++..+.+||+|||+..-+.+.+++|.+....-.|+++.+ .|..|.+|-+|+...++++.|+|||..++
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 9999999999999999888899999988777788887754 46789999999999999999999998432
Q ss_pred -CccccceEEeeCCCC----cEEEcccCCCCCCCcceeEEEEEC---C--cEEEEEcCCCCCCCCCeEEEEEcCCCcEEE
Q 005493 220 -RRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYD---D--KNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (694)
Q Consensus 220 -~~~~~~v~~yd~~t~----~W~~l~~~g~~P~~R~~hs~~~~~---~--~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~ 289 (694)
.+++||+|++++.-+ .|......|.+|.+|..|+++++- + ..+|||||.++- .+.|+|.+|+++.+|.+
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeeccc
Confidence 358999999998744 499999999999999999999982 1 259999998764 47899999999999999
Q ss_pred eeccCCCCCCCcceEEEEECCEEEEEcCCCC------C--------CCcCeEEEEECCCCcEEEeecC---CCCCCCCCc
Q 005493 290 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR------K--------KRHAETLIFDILKGEWSVAITS---PSSSVTSNK 352 (694)
Q Consensus 290 l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~------~--------~~~~~v~~yd~~t~~W~~l~~~---~~~~p~~r~ 352 (694)
....|..|.||+-|+++.+++++|||||.-- . ...+.+-++++++..|..+... ....|.+|.
T Consensus 245 p~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA 324 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA 324 (830)
T ss_pred ccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccc
Confidence 9999999999999999999999999999521 0 1245677899999999877432 123689999
Q ss_pred CcEEEEEeecCCcEEEEEcCCCCCC--------CCcEEEEECccC
Q 005493 353 GFTLVLVQHKEKDFLVAFGGIKKEP--------SNQVEVLSIEKN 389 (694)
Q Consensus 353 ~~s~~~v~~~~~~~i~v~GG~~~~~--------~~~v~~~di~~~ 389 (694)
+|+++.++ ..+|+..|.++.. -.++|.+|...-
T Consensus 325 GHCAvAig----tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 325 GHCAVAIG----TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred cceeEEec----cEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 99999998 6899999987753 446666665443
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=6.6e-31 Score=294.56 Aligned_cols=246 Identities=33% Similarity=0.544 Sum_probs=221.7
Q ss_pred CCCCCccceEEEEECCEEEEEccccCCCCCcc-EEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCC
Q 005493 142 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 220 (694)
Q Consensus 142 ~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~ 220 (694)
..+.+|.+|+++.+++++|||||........+ ++|++|..+..|......+..|.+|++|+++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 34667899999999999999999976544333 69999999999999999999999999999999999999999998655
Q ss_pred ccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEEEcCCCcEEEeeccCCCCCC
Q 005493 221 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSP 299 (694)
Q Consensus 221 ~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~yd~~t~~W~~l~~~~~~p~~ 299 (694)
..+++++.||+.|++|..+.+.+.+|.+|.+|++++++++ +|||||..... ..|++|+||+++.+|.++...+..|.|
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~-l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK-LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE-EEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 5689999999999999999999999999999999999977 99999998766 899999999999999999999999999
Q ss_pred CcceEEEEECCEEEEEcCCC-CCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC--
Q 005493 300 RAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 376 (694)
Q Consensus 300 R~~~sav~~~~~iyV~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~-- 376 (694)
|.+|+++++++++||+||.. +...++|+|.||+.+..|..+. .....|.+|.+|+++... .+++++||....
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~----~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSG----DHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEEC----CEEEEEcCCccccc
Confidence 99999999999999999998 6778899999999999999554 456789999999999554 689999999763
Q ss_pred -CCCcEEEEECccCCcCC
Q 005493 377 -PSNQVEVLSIEKNESSM 393 (694)
Q Consensus 377 -~~~~v~~~di~~~~w~~ 393 (694)
...++|.|++.+..|..
T Consensus 290 ~~l~~~~~l~~~~~~w~~ 307 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSK 307 (482)
T ss_pred ccccccccccccccceee
Confidence 68999999999888765
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=272.66 Aligned_cols=248 Identities=30% Similarity=0.522 Sum_probs=211.5
Q ss_pred CCCCCCccceEEEEE--CCEEEEEcCCCCCC----CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC
Q 005493 83 GDKPIPRFNHAAAVI--GNKMIVVGGESGNG----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG 156 (694)
Q Consensus 83 ~~~P~~R~~hs~~~~--~~~lyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~ 156 (694)
-++|.||.++++++. .+.|++|||...++ .++++|.||..++.|+.+... -+||+|..|.+|++-
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp---------n~P~pRsshq~va~~ 131 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP---------NAPPPRSSHQAVAVP 131 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC---------CCcCCCccceeEEec
Confidence 367899999998876 45799999964332 589999999999999998762 456678889888885
Q ss_pred -CEEEEEccccCCCC-----CccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCC---CccccceE
Q 005493 157 -KKVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK---RRKLNDLH 227 (694)
Q Consensus 157 -~~Iyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~ 227 (694)
|.+|||||.-.... ...++|.||+.+++|..+...| -|.+|++|-+++...+|+||||+... ..+.||+|
T Consensus 132 s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy 210 (521)
T KOG1230|consen 132 SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVY 210 (521)
T ss_pred cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeE
Confidence 89999999754221 2568999999999999998766 79999999999999999999998543 35889999
Q ss_pred EeeCCCCcEEEcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCC---------CCCCCeEEEEEcCC-----CcEEEeec
Q 005493 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK---------SKTLNDLYSLDFET-----MIWTRIKI 292 (694)
Q Consensus 228 ~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~---------~~~~~dv~~yd~~t-----~~W~~l~~ 292 (694)
+||+++.+|+++.+.|..|.||.+|++.+. ++. |||+||++. ....+|+|.+++++ -.|+.+.+
T Consensus 211 ~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 211 AFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 999999999999999999999999999999 566 999999963 24678999999988 78999999
Q ss_pred cCCCCCCCcceEEEEE-CCEEEEEcCCCC---------CCCcCeEEEEECCCCcEEEee
Q 005493 293 RGFHPSPRAGCCGVLC-GTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 293 ~~~~p~~R~~~sav~~-~~~iyV~GG~~~---------~~~~~~v~~yd~~t~~W~~l~ 341 (694)
.+..|.||+++++++. +++-|.|||... +...+++|.||+..++|....
T Consensus 290 ~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred CCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 9999999999998887 569999999754 245789999999999998764
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=291.22 Aligned_cols=211 Identities=16% Similarity=0.234 Sum_probs=186.1
Q ss_pred EEEECCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCcc
Q 005493 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 173 (694)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~ 173 (694)
++.+++.||++||.......+.+++|||.+++|..++++ + .+|..+++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m----------~-~~r~~~~~v~~~~~iYviGG~~~----~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM----------N-SPRLYASGVPANNKLYVVGGLPN----PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC----------C-chhhcceEEEECCEEEEECCcCC----CC
Confidence 345899999999987766788999999999999999983 3 35566888999999999999752 25
Q ss_pred EEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeE
Q 005493 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (694)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs 253 (694)
++++||+.+++|..++ +||.+|.+|++++++++||++||.+.. .+.+++||+.+++|+.++ ++|.+|.+|+
T Consensus 332 sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~ 402 (480)
T PHA02790 332 SVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSC 402 (480)
T ss_pred ceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccce
Confidence 7999999999999988 599999999999999999999998643 367999999999999987 8999999999
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECC
Q 005493 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (694)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~ 333 (694)
+++++++ |||+||. +.+||+++++|+.++++ |.+|..+++++++++|||+||.+.....+.+++||+.
T Consensus 403 ~~~~~~~-IYv~GG~--------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 403 ALVFGRR-LFLVGRN--------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEECCE-EEEECCc--------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 9999998 9999984 67899999999999765 8899999999999999999998765556789999999
Q ss_pred CCcEEEe
Q 005493 334 KGEWSVA 340 (694)
Q Consensus 334 t~~W~~l 340 (694)
+++|+..
T Consensus 471 ~~~W~~~ 477 (480)
T PHA02790 471 TYSWNIW 477 (480)
T ss_pred CCeEEec
Confidence 9999864
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=4e-30 Score=265.04 Aligned_cols=247 Identities=23% Similarity=0.433 Sum_probs=201.2
Q ss_pred CCCCccccC-----CCeEEEecC-CCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEEC-CEEEEE
Q 005493 32 PPKRNSNPN-----SECVAPSSN-HADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVV 104 (694)
Q Consensus 32 ~~~r~~~~~-----~~~i~~~GG-~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~-~~lyv~ 104 (694)
|+||+.... -+-+++||| ..++......++.|..++ .++.|..+.. ++.|.||++|++|++. |.+|||
T Consensus 64 PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~----k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNT----KKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEec----cccceeEecc-CCCcCCCccceeEEeccCeEEEe
Confidence 477733322 244999999 333333333333333333 8999999964 4778899999999986 889999
Q ss_pred cCCCCC--C----CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC---CCccEE
Q 005493 105 GGESGN--G----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG---SDRVSV 175 (694)
Q Consensus 105 GG~~~~--~----~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~---~~~~~v 175 (694)
||...+ + .+.++|+||..+++|.++... ..|.+|.+|-++++.++|++|||..+.. .+.|+|
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~---------g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDv 209 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG---------GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDV 209 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccC---------CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeee
Confidence 996422 1 578999999999999999875 3456889999999999999999987643 357899
Q ss_pred EEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccC--------CCccccceEEeeCCC-----CcEEEccc
Q 005493 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDG--------KRRKLNDLHMFDLKS-----LTWLPLHC 241 (694)
Q Consensus 176 ~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~--------~~~~~~~v~~yd~~t-----~~W~~l~~ 241 (694)
|+||+.+-+|+.+.++|..|.+|+++++.+. .+.|||+||+.. .+...+|+|.+++.. ..|+++.+
T Consensus 210 y~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 210 YAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9999999999999998889999999999998 899999999852 245789999999998 78999999
Q ss_pred CCCCCCCcceeEEEEECCcEEEEEcCCCC---------CCCCCeEEEEEcCCCcEEEeec
Q 005493 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 242 ~g~~P~~R~~hs~~~~~~~~lyv~GG~~~---------~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
.|.-|.||.++++++..+...|.|||... ..++||+|.||++.++|.....
T Consensus 290 ~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 99999999999999998866999999743 3578999999999999997654
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=4.7e-29 Score=280.75 Aligned_cols=209 Identities=16% Similarity=0.273 Sum_probs=181.9
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeC
Q 005493 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (694)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 231 (694)
.+..++.||++||... ....+++++||+.+++|..++ +||.+|..++++.++++||++||.+.. +++++||+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC----CceEEEEC
Confidence 3458999999999854 345678999999999999998 599999999999999999999998532 56999999
Q ss_pred CCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCE
Q 005493 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~ 311 (694)
.+++|..++ +||.+|.+|++++++++ ||++||.... .+.+++||+.+++|+.++++ |.+|.++++++++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNV-IYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCE-EEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999997 89999999999999999 9999998543 36799999999999998665 889999999999999
Q ss_pred EEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCC
Q 005493 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (694)
Q Consensus 312 iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~ 390 (694)
|||+||. +.+||+.+++|+.++ +++.+|.+++++++. +.||++||+++.. .+.+++||+.+++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~----~m~~~r~~~~~~v~~----~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLID----DPIYPRDNPELIIVD----NKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcC----CCCCCccccEEEEEC----CEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999983 578999999999986 235678899998886 7899999986443 6789999999999
Q ss_pred cCC
Q 005493 391 SSM 393 (694)
Q Consensus 391 w~~ 393 (694)
|+.
T Consensus 474 W~~ 476 (480)
T PHA02790 474 WNI 476 (480)
T ss_pred EEe
Confidence 865
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.3e-29 Score=262.01 Aligned_cols=283 Identities=25% Similarity=0.399 Sum_probs=232.8
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCC-CCcC
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-GLLD 114 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~-~~~~ 114 (694)
..+...+-|++|||-+.++ .+...+|+- .+++|..-++-|+.|.+-..|+++-.|.+||+|||+..- .+.|
T Consensus 37 RAVaikELiviFGGGNEGi--iDELHvYNT------atnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsN 108 (830)
T KOG4152|consen 37 RAVAIKELIVIFGGGNEGI--IDELHVYNT------ATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSN 108 (830)
T ss_pred hheeeeeeEEEecCCcccc--hhhhhhhcc------ccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccc
Confidence 4555567899999966655 234456777 899999999999999999999999999999999998654 4678
Q ss_pred cEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC--------CCccEEEEEECCCC---
Q 005493 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG--------SDRVSVWTFDTETE--- 183 (694)
Q Consensus 115 ~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~--------~~~~~v~~yd~~t~--- 183 (694)
++|-+-...-.|+++.+.. +...+++.+|.+|+...++++.|+|||..... .+++++|++++.-+
T Consensus 109 dLYELQasRWeWkrlkp~~----p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv 184 (830)
T KOG4152|consen 109 DLYELQASRWEWKRLKPKT----PKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV 184 (830)
T ss_pred hHHHhhhhhhhHhhcCCCC----CCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCce
Confidence 8877777777899887742 22235566889999999999999999986422 24778999998744
Q ss_pred -cEEEeeecCCCCCcceeeEEEEE------CCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEE
Q 005493 184 -CWSVVEAKGDIPVARSGHTVVRA------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (694)
Q Consensus 184 -~W~~~~~~g~~p~~R~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~ 256 (694)
.|...-..|.+|.+|..|+++++ ..++|||||..+- .+.|+|.+|+++..|.+....|-.|.||.-|+++.
T Consensus 185 v~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~ 262 (830)
T KOG4152|consen 185 VAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATT 262 (830)
T ss_pred EEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCccccccee
Confidence 49988888999999999999987 2489999999875 68999999999999999999999999999999999
Q ss_pred ECCcEEEEEcCCCC--------------CCCCCeEEEEEcCCCcEEEeecc----CCCCCCCcceEEEEECCEEEEEcCC
Q 005493 257 YDDKNLLIFGGSSK--------------SKTLNDLYSLDFETMIWTRIKIR----GFHPSPRAGCCGVLCGTKWYIAGGG 318 (694)
Q Consensus 257 ~~~~~lyv~GG~~~--------------~~~~~dv~~yd~~t~~W~~l~~~----~~~p~~R~~~sav~~~~~iyV~GG~ 318 (694)
++++ +|||||+-. -.|.+.+-++++.+..|..+-.. ...|.+|.+||+++++.++||..|.
T Consensus 263 IGnK-MyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGR 341 (830)
T KOG4152|consen 263 IGNK-MYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGR 341 (830)
T ss_pred ecce-eEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEecc
Confidence 9999 999999721 14678889999999999987541 2268999999999999999999998
Q ss_pred CCC-------CCcCeEEEEECC
Q 005493 319 SRK-------KRHAETLIFDIL 333 (694)
Q Consensus 319 ~~~-------~~~~~v~~yd~~ 333 (694)
++. ..+.|+|.+|..
T Consensus 342 DGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 342 DGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred chhhHhhccccchhhhhhhccc
Confidence 753 345788888764
No 27
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.90 E-value=1.5e-23 Score=207.77 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=196.5
Q ss_pred CCCcceeeEEEEEC------CeEEEEccccCCCccccceEEeeCCCCc--------EEEcccCCCCCCCcceeEEEEECC
Q 005493 194 IPVARSGHTVVRAS------SVLILFGGEDGKRRKLNDLHMFDLKSLT--------WLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 194 ~p~~R~~~~~~~~~------~~lyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+|+.|+.+.+...+ ...+|+||++++++.++++|+....+.. ++.....|++|.+||+|++.++..
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 78888775555422 2788999999999999999999887654 344455799999999999988854
Q ss_pred c---EEEEEcCCCCC--------------CCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC
Q 005493 260 K---NLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (694)
Q Consensus 260 ~---~lyv~GG~~~~--------------~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~ 322 (694)
+ .+++|||++.. .+...||.+|++.++++.... +++..+.++|.+.+.+|.+||+||++-..
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 3 78999998643 367889999999999998876 67788999999999999999999998877
Q ss_pred CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC--------cCCC
Q 005493 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE--------SSMG 394 (694)
Q Consensus 323 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~--------w~~~ 394 (694)
......+|.++.+.-...+...+.....+...+++++...+.+.++|+|||..+.+++|.|..+..++ .++.
T Consensus 178 d~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~ 257 (337)
T PF03089_consen 178 DSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPE 257 (337)
T ss_pred CCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCC
Confidence 77777777776665555555566677888899999999888899999999999999999998887665 4778
Q ss_pred ccccCCCCCCCcceecccCCCCccccccCCCCCCCCCChHHHHHHHHHH
Q 005493 395 RRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAI 443 (694)
Q Consensus 395 w~~~~~~~~~~~~~fggs~~~~~l~~~~~~~~~~~~~~s~~~~~l~~~~ 443 (694)
|+ .++.++.+||||+++ +|+.++++|++.++..+|+-
T Consensus 258 Wt---~dI~hSrtWFGgs~G---------~G~~Li~iP~e~~~~~~da~ 294 (337)
T PF03089_consen 258 WT---GDIKHSRTWFGGSMG---------KGSALIGIPSEGRQAPSDAY 294 (337)
T ss_pred CC---CCcCcCccccccccC---------CceEEEEECCCCCCCCCCce
Confidence 98 779999999999999 99999999999998886663
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.71 E-value=1.3e-15 Score=156.71 Aligned_cols=264 Identities=21% Similarity=0.308 Sum_probs=188.0
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCC-CCccceEEEEECCEEEEEcCCCCC----
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGN---- 110 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~lyv~GG~~~~---- 110 (694)
+....++.+|+.=|..-.-.+. .|+. .....|+.++ ..| .+|.+..+++++++||+|||....
T Consensus 41 ~Ga~ig~~~YVGLGs~G~afy~-----ldL~----~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 41 AGALIGDTVYVGLGSAGTAFYV-----LDLK----KPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred ccceecceEEEEeccCCcccee-----hhhh----cCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCCCCC
Confidence 5555567888877733222121 2221 1568999998 555 679999999999999999997432
Q ss_pred -CCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECC-EEEEEccccCCC-------------------
Q 005493 111 -GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSG------------------- 169 (694)
Q Consensus 111 -~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~-~Iyv~GG~~~~~------------------- 169 (694)
...+++++|||.+++|..+... .|....+++++.+++ +||++||.+..-
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~----------sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTR----------SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred ceEeeeeEEecCCCChhheeccc----------cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 3578999999999999999873 233456889999987 999999985210
Q ss_pred --------------CCccEEEEEECCCCcEEEeeecCCCC-CcceeeEEEEECCeEEEEccccCCCccccceEEeeCC--
Q 005493 170 --------------SDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-- 232 (694)
Q Consensus 170 --------------~~~~~v~~yd~~t~~W~~~~~~g~~p-~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-- 232 (694)
.....|+.|++.++.|+.+-. .| .++++++++.-++++.++-|.-..+-.+..+++++..
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~---~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~ 255 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE---NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD 255 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCc---CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccC
Confidence 012259999999999998752 44 4667766666678899999987766666777777775
Q ss_pred CCcEEEcccCCCCCCCcc-------eeEEEEECCcEEEEEcCCCC-------------------CCCCCeEEEEEcCCCc
Q 005493 233 SLTWLPLHCTGTGPSPRS-------NHVAALYDDKNLLIFGGSSK-------------------SKTLNDLYSLDFETMI 286 (694)
Q Consensus 233 t~~W~~l~~~g~~P~~R~-------~hs~~~~~~~~lyv~GG~~~-------------------~~~~~dv~~yd~~t~~ 286 (694)
.-+|..+. ++|.+.. ++-.-..++. +++.||..- ....++||.|| .+.
T Consensus 256 ~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~-~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 256 NLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGE-VLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred ceeeeecc---CCCCCCCCCccccceeccceeCCe-EEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 45799986 4444333 3323334455 788888631 13567899999 999
Q ss_pred EEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEECC
Q 005493 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDIL 333 (694)
Q Consensus 287 W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd~~ 333 (694)
|+.+ +.+|.++++-.++..++.||++||.+.. .....++.+...
T Consensus 330 Wk~~---GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 330 WKIV---GELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred eeee---cccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 9998 5568899988889999999999997654 444555554433
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=8.5e-15 Score=150.73 Aligned_cols=275 Identities=21% Similarity=0.344 Sum_probs=190.5
Q ss_pred CCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCC--CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 005493 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (694)
Q Consensus 84 ~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv 161 (694)
+.|.+--..+.+.+++.+||-=|..+ ...+.+|+.. ..|+.++. .|..+|.+..+++.+++||+
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~----------FpG~~rnqa~~a~~~~kLyv 97 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIAD----------FPGGARNQAVAAVIGGKLYV 97 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEccc----------CCCcccccchheeeCCeEEE
Confidence 77888777788889999999655322 3567777765 58999998 67788899999999999999
Q ss_pred EccccCCCC----CccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCC-----------------
Q 005493 162 VGGKTDSGS----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGK----------------- 219 (694)
Q Consensus 162 ~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~----------------- 219 (694)
|||...... ..+++|+||+.+++|..+.+ ..|....+++++.+++ +||++||.+..
T Consensus 98 FgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 98 FGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred eeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 999865333 36789999999999999986 4577788888888887 99999997421
Q ss_pred ----------------CccccceEEeeCCCCcEEEcccCCCCC-CCcceeEEEEECCcEEEEEcCCCC-CCCCCeEEEEE
Q 005493 220 ----------------RRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSK-SKTLNDLYSLD 281 (694)
Q Consensus 220 ----------------~~~~~~v~~yd~~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~~lyv~GG~~~-~~~~~dv~~yd 281 (694)
......+..|+|.+++|+.+. ..| .++++. ++++.+..+.++-|.-. .-....+++++
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGs-a~~~~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGS-AVVIKGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccCc-ceeecCCeEEEEcceecCCccccceeEEE
Confidence 013456889999999999874 444 455564 44555443666666533 33345566776
Q ss_pred cC--CCcEEEeeccCCCC----CCCcceEEEEECCEEEEEcCCCC-------------------CCCcCeEEEEECCCCc
Q 005493 282 FE--TMIWTRIKIRGFHP----SPRAGCCGVLCGTKWYIAGGGSR-------------------KKRHAETLIFDILKGE 336 (694)
Q Consensus 282 ~~--t~~W~~l~~~~~~p----~~R~~~sav~~~~~iyV~GG~~~-------------------~~~~~~v~~yd~~t~~ 336 (694)
+. .-+|..+...+.++ .+..++-+-..++.+.|.||..- ....++||.|| .+.
T Consensus 252 ~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 252 FGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred eccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 64 56899997653221 12222223334788999998642 13457889988 889
Q ss_pred EEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC--CCCcEEEEECcc
Q 005493 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEK 388 (694)
Q Consensus 337 W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~--~~~~v~~~di~~ 388 (694)
|+.+..+|. + .++++.+.. .+.+|++||.... ...+|+.+....
T Consensus 330 Wk~~GeLp~----~-l~YG~s~~~---nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 330 WKIVGELPQ----G-LAYGVSLSY---NNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred eeeecccCC----C-ccceEEEec---CCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 999864433 2 233333332 3679999998644 366666655443
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.58 E-value=2.1e-15 Score=159.56 Aligned_cols=269 Identities=22% Similarity=0.329 Sum_probs=189.2
Q ss_pred CCCcEEEcccccccCCCCCCCCCCCccceEEEEECC--EEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcce
Q 005493 122 DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK--KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS 199 (694)
Q Consensus 122 ~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~--~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~ 199 (694)
-+-.|.++++.... -.+....+..|.||.+|...+ .||++||+++ ...+.++|.|+...+.|..+...+..|-.|.
T Consensus 237 y~~~W~~i~~~~~~-~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTK-GDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred ccccccccCchhhc-ccccccCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 34679988764211 111112355778999999865 9999999965 4567899999999999999987777899999
Q ss_pred eeEEEEECC--eEEEEccccCCC-----ccccceEEeeCCCCcEEEcccC---CCCCCCcceeEEEEECCc-EEEEEcCC
Q 005493 200 GHTVVRASS--VLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDK-NLLIFGGS 268 (694)
Q Consensus 200 ~~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~l~~~---g~~P~~R~~hs~~~~~~~-~lyv~GG~ 268 (694)
+|-++..-. ++|+.|-+-+.. ..-+|+|+||..++.|..+... .-.|...+.|.|++..++ ++|||||+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 999998755 999999874321 2357899999999999988542 135889999999999876 79999998
Q ss_pred CC---CCCCCeEEEEEcCCCcEEEeeccCC-------CCCCCcceEEEEE--CCEEEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 269 SK---SKTLNDLYSLDFETMIWTRIKIRGF-------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 269 ~~---~~~~~dv~~yd~~t~~W~~l~~~~~-------~p~~R~~~sav~~--~~~iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
.- ...+.-+|.||.....|..+...-. --..|.+|++-++ +.++|++||.......+=.+.||+....
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~ 474 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEH 474 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecccc
Confidence 42 2456779999999999987654211 1235778877655 6789999998876655555677765543
Q ss_pred EEEeecC--CCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC-------CCCCcEEEEECccCCcC
Q 005493 337 WSVAITS--PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESS 392 (694)
Q Consensus 337 W~~l~~~--~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~-------~~~~~v~~~di~~~~w~ 392 (694)
=..+... ...+..+-.++..-.+.++..+.|.+.-|... ...+.+|+|++.++.|.
T Consensus 475 ~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~ 539 (723)
T KOG2437|consen 475 VDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWS 539 (723)
T ss_pred chhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchh
Confidence 2222110 11112223344444444455567777777632 23678999999999974
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.52 E-value=7.1e-15 Score=155.60 Aligned_cols=263 Identities=21% Similarity=0.297 Sum_probs=185.6
Q ss_pred CCCCceEEeeccC-------CCCCCccceEEEEECC--EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCC
Q 005493 71 GNSENWMVLSIAG-------DKPIPRFNHAAAVIGN--KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLP 141 (694)
Q Consensus 71 ~~t~~W~~l~~~~-------~~P~~R~~hs~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~ 141 (694)
+-+..|.+++... .-|..|.||.++...+ .||++||+++-+.+.++|.|+...+.|..+..-+
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-------- 307 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-------- 307 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC--------
Confidence 4677898887654 5688899999998754 8999999999999999999999999999987632
Q ss_pred CCCCCccceEEEEECC--EEEEEccccCCC-----CCccEEEEEECCCCcEEEeeec---CCCCCcceeeEEEEECCe--
Q 005493 142 LKIPACRGHSLISWGK--KVLLVGGKTDSG-----SDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRASSV-- 209 (694)
Q Consensus 142 ~~~p~r~~~s~v~~~~--~Iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~---g~~p~~R~~~~~~~~~~~-- 209 (694)
-.|..|..|-+|.... ++|+.|-+-+.. ....++|+||..++.|.-+.-. ..-|...+.|.+++.+.+
T Consensus 308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 1244677888888754 999999876422 2356899999999999987632 125888999999999876
Q ss_pred EEEEccccCC--CccccceEEeeCCCCcEEEcccC----C---CCCCCcceeEEEEECC-cEEEEEcCCCCCCCCCeEEE
Q 005493 210 LILFGGEDGK--RRKLNDLHMFDLKSLTWLPLHCT----G---TGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYS 279 (694)
Q Consensus 210 lyv~GG~~~~--~~~~~~v~~yd~~t~~W~~l~~~----g---~~P~~R~~hs~~~~~~-~~lyv~GG~~~~~~~~dv~~ 279 (694)
+|||||+.-. ......+|+||.....|..+... + .-...|.+|+|-.+.+ ..+|+|||.....-++-.+.
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~ 467 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFS 467 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhc
Confidence 9999998532 23567899999999999866421 1 1234688888876654 36999999987766666677
Q ss_pred EEcCCCcEEEeec---c-CCCCCCCcceEEEEE---CCEEEEEcCCCCC------CCcCeEEEEECCCCcEEEee
Q 005493 280 LDFETMIWTRIKI---R-GFHPSPRAGCCGVLC---GTKWYIAGGGSRK------KRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 280 yd~~t~~W~~l~~---~-~~~p~~R~~~sav~~---~~~iyV~GG~~~~------~~~~~v~~yd~~t~~W~~l~ 341 (694)
||+....-..+.. . ...-+.+.+..-+.. ...|.+.-|++.. ...+.+|+|++.++.|..+.
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred ceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence 7654332222111 0 000111211111222 4567777776532 23567899999999997764
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.94 E-value=1.8e-09 Score=82.48 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=46.1
Q ss_pred cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCc
Q 005493 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (694)
Q Consensus 197 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R 249 (694)
+|.+|++++++++|||+||.......++++++||+.+++|+.++ +||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 68999999999999999999885568999999999999999997 899887
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.88 E-value=4.2e-09 Score=80.50 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=44.9
Q ss_pred CccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcc
Q 005493 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 198 (694)
Q Consensus 146 ~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R 198 (694)
+|.+|++++++++|||+||........+++++||+.+++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 36789999999999999999876667899999999999999998 699887
No 34
>PLN02772 guanylate kinase
Probab=98.82 E-value=2e-08 Score=108.04 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=78.6
Q ss_pred CCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCC
Q 005493 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (694)
Q Consensus 194 ~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~ 273 (694)
-+.++.+++++.+++++|||||.+..+..++.+|+||..+.+|......|..|.||.+|+++++++.+|+|+++.+...
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 3568899999999999999999887655789999999999999999999999999999999999887799998765542
Q ss_pred CCeEEEEEcCCC
Q 005493 274 LNDLYSLDFETM 285 (694)
Q Consensus 274 ~~dv~~yd~~t~ 285 (694)
.++|.+.+.|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 67888887663
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.75 E-value=1.9e-08 Score=76.58 Aligned_cols=48 Identities=42% Similarity=0.762 Sum_probs=42.8
Q ss_pred CCeEEEEcccc-CCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE
Q 005493 207 SSVLILFGGED-GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (694)
Q Consensus 207 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 257 (694)
+++||||||.+ .....++++|+||+.+++|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 4557899999999999999999 489999999999864
No 36
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.65 E-value=2.8e-06 Score=85.75 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=104.6
Q ss_pred EEEEEccccCCCCCccEEEEEECCCCc--------EEEeeecCCCCCcceeeEEEEEC----CeEEEEccccCC--C---
Q 005493 158 KVLLVGGKTDSGSDRVSVWTFDTETEC--------WSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGK--R--- 220 (694)
Q Consensus 158 ~Iyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~p~~R~~~~~~~~~----~~lyv~GG~~~~--~--- 220 (694)
.-++.||.+.+....+.+|+....+.. ..+....|++|.+|++|++.++. ..+++|||+.-- +
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 456679988777777788888765432 34445568999999999987762 478999998421 0
Q ss_pred --------ccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCC--CCCCCCeEEEEEcCC---CcE
Q 005493 221 --------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS--KSKTLNDLYSLDFET---MIW 287 (694)
Q Consensus 221 --------~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~--~~~~~~dv~~yd~~t---~~W 287 (694)
.....|+.+|++-+.++... .+.+..+...|.+..-++. +|++||.. .+.....++++.++- .-+
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~-VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~ 197 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDC-VYILGGHSLESDSRPPRLYRLKVDLLLGSPA 197 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCce-EEEEccEEccCCCCCCcEEEEEEeecCCCce
Confidence 12345888999887776543 2256667788888777777 99999984 233445677776532 112
Q ss_pred EEeeccCCCCCCCcceEEEEE---CCEEEEEcCCCCC
Q 005493 288 TRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRK 321 (694)
Q Consensus 288 ~~l~~~~~~p~~R~~~sav~~---~~~iyV~GG~~~~ 321 (694)
..... ++.+.+..+|++. .+..+|+||+...
T Consensus 198 vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 198 VSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred eEEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 22211 2445555555543 4788999998653
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.63 E-value=4.1e-08 Score=73.81 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=40.8
Q ss_pred cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcc
Q 005493 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (694)
Q Consensus 197 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~ 240 (694)
+|++|++++++++|||+||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 68999999999999999999986678999999999999999987
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.62 E-value=6.3e-08 Score=73.65 Aligned_cols=48 Identities=40% Similarity=0.812 Sum_probs=42.3
Q ss_pred CCEEEEEcccc-CCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE
Q 005493 156 GKKVLLVGGKT-DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206 (694)
Q Consensus 156 ~~~Iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~ 206 (694)
+++||||||.. .....++++|+||+.+++|+.+. ++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57999999998 35667899999999999999984 79999999999864
No 39
>PLN02772 guanylate kinase
Probab=98.62 E-value=2.2e-07 Score=100.09 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=77.0
Q ss_pred CCCCCcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CCEEEEEcCCCCC
Q 005493 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 321 (694)
Q Consensus 244 ~~P~~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~~iyV~GG~~~~ 321 (694)
--+.++..|+++.++++ +||+||.+... .++.+|+||..+.+|......|..|.+|.+|+++++ +++|+|+++....
T Consensus 20 ~~~~~~~~~tav~igdk-~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 20 FGVKPKNRETSVTIGDK-TYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred ccCCCCCcceeEEECCE-EEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 34568899999999999 99999987654 789999999999999999999999999999999998 6899999986654
Q ss_pred CCcCeEEEEECCCC
Q 005493 322 KRHAETLIFDILKG 335 (694)
Q Consensus 322 ~~~~~v~~yd~~t~ 335 (694)
..++|.+.+.|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 267888887763
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.59 E-value=5.4e-08 Score=73.95 Aligned_cols=47 Identities=38% Similarity=0.733 Sum_probs=32.1
Q ss_pred cceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCC
Q 005493 197 ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (694)
Q Consensus 197 ~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P 246 (694)
+|++|+++.+ +++||||||.+..+..++++|+||+.+++|+++. ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6899999998 5899999999987778999999999999999995 666
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.58 E-value=1e-07 Score=71.63 Aligned_cols=45 Identities=27% Similarity=0.519 Sum_probs=40.7
Q ss_pred CccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeee
Q 005493 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (694)
Q Consensus 146 ~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (694)
+|.+|++++++++||++||.......++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 467899999999999999998867788999999999999999984
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.54 E-value=2e-07 Score=70.92 Aligned_cols=45 Identities=36% Similarity=0.641 Sum_probs=40.7
Q ss_pred CccceEEEEECCEEEEEcCC---CCCCCcCcEEEEECCCCcEEEcccc
Q 005493 88 PRFNHAAAVIGNKMIVVGGE---SGNGLLDDVQVLNFDRFSWTAASSK 132 (694)
Q Consensus 88 ~R~~hs~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~ 132 (694)
||.+|++++++++||||||. ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 4555789999999999999999873
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.53 E-value=1.8e-07 Score=71.09 Aligned_cols=44 Identities=32% Similarity=0.579 Sum_probs=39.8
Q ss_pred cceeeEEEEECCeEEEEccc--cCCCccccceEEeeCCCCcEEEcc
Q 005493 197 ARSGHTVVRASSVLILFGGE--DGKRRKLNDLHMFDLKSLTWLPLH 240 (694)
Q Consensus 197 ~R~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~l~ 240 (694)
+|++|++++++++||||||. .......+++++||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 68999999999999999999 444568899999999999999987
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.49 E-value=1.1e-07 Score=72.14 Aligned_cols=46 Identities=41% Similarity=0.731 Sum_probs=30.2
Q ss_pred CcceeEEEEECCcEEEEEcCCCCC-CCCCeEEEEEcCCCcEEEeecc
Q 005493 248 PRSNHVAALYDDKNLLIFGGSSKS-KTLNDLYSLDFETMIWTRIKIR 293 (694)
Q Consensus 248 ~R~~hs~~~~~~~~lyv~GG~~~~-~~~~dv~~yd~~t~~W~~l~~~ 293 (694)
||++|+++.+++..||||||.+.. ..++++|+||+++++|++++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 699999999975559999999775 6899999999999999999544
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.43 E-value=4.4e-07 Score=66.58 Aligned_cols=40 Identities=40% Similarity=0.781 Sum_probs=35.8
Q ss_pred CCCCccceEEEEECCEEEEEcCCC--CCCCcCcEEEEECCCC
Q 005493 85 KPIPRFNHAAAVIGNKMIVVGGES--GNGLLDDVQVLNFDRF 124 (694)
Q Consensus 85 ~P~~R~~hs~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~ 124 (694)
+|.+|.+|++++++++||||||.. ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999998 4667899999999864
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.40 E-value=2.3e-05 Score=79.91 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=111.2
Q ss_pred EEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCC----CcEEEcccCCCCCCC
Q 005493 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPSP 248 (694)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~l~~~g~~P~~ 248 (694)
.-..||+.+++++.+.. +.--++.+.+. -+|++++.||.... ...+-.|++.+ ..|.... ..|-.+
T Consensus 47 ~s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQSG 117 (243)
T ss_pred EEEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--ccccCC
Confidence 35689999999998873 33334433333 47899999998653 34567787754 6798775 258899
Q ss_pred cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcC-C-----CcEEEeeccC-CCCCCCcceEEEEECCEEEEEcCCCCC
Q 005493 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-T-----MIWTRIKIRG-FHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (694)
Q Consensus 249 R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~-t-----~~W~~l~~~~-~~p~~R~~~sav~~~~~iyV~GG~~~~ 321 (694)
|.+.++..+.+..++|+||.... .+.|-+. . ..|..+.... ..+...+=+..+.=+++|||++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence 99999999988779999998732 2333332 1 1222221110 012222223333348999999984
Q ss_pred CCcCeEEEEECCCCcE-EEeecCCCCCCCCCcCcEEEEEee------cCCcEEEEEcC
Q 005493 322 KRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQH------KEKDFLVAFGG 372 (694)
Q Consensus 322 ~~~~~v~~yd~~t~~W-~~l~~~~~~~p~~r~~~s~~~v~~------~~~~~i~v~GG 372 (694)
..++||.+++++ ..++..|...-.-...-+++++.. .-.-+|+|.||
T Consensus 190 ----~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~~~~~~~evlvCGG 243 (243)
T PF07250_consen 190 ----GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTPPNNYTAEVLVCGG 243 (243)
T ss_pred ----CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCCCCCCCeEEEEeCC
Confidence 357899999987 677766654222223344555543 11356777777
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.34 E-value=9e-07 Score=64.94 Aligned_cols=41 Identities=39% Similarity=0.658 Sum_probs=36.8
Q ss_pred CCCcceeeEEEEECCeEEEEccccC-CCccccceEEeeCCCC
Q 005493 194 IPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSL 234 (694)
Q Consensus 194 ~p~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~ 234 (694)
+|.+|.+|++++++++||||||.+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4899999999999999999999994 6678999999998763
No 48
>smart00612 Kelch Kelch domain.
Probab=98.25 E-value=1.5e-06 Score=64.72 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=41.2
Q ss_pred eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECC
Q 005493 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 209 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+||++||.... ...+++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998763 56899999999999999987 8999999999988764
No 49
>smart00612 Kelch Kelch domain.
Probab=98.06 E-value=6.3e-06 Score=61.30 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECC
Q 005493 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310 (694)
Q Consensus 262 lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~ 310 (694)
|||+||.......+++++||+.+++|+.++.+ |.+|..|+++++++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 89999997767789999999999999998754 88999999888764
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.99 E-value=0.00034 Score=71.45 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=94.0
Q ss_pred EEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCC----CcEEEeeec
Q 005493 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSVVEAK 191 (694)
Q Consensus 116 v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~ 191 (694)
-..||+.+++++.+... .-.-|.+++ ..-+++++++||..+ ....+-.|++.+ ..|.+...
T Consensus 48 s~~yD~~tn~~rpl~v~----------td~FCSgg~-~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~- 112 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----------TDTFCSGGA-FLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPN- 112 (243)
T ss_pred EEEEecCCCcEEeccCC----------CCCcccCcC-CCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcc-
Confidence 45799999999988752 122223332 334789999999865 233577788765 67987763
Q ss_pred CCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCC-----CcEEEcccC-CCCCCCcceeEEEEECCcEEEE
Q 005493 192 GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS-----LTWLPLHCT-GTGPSPRSNHVAALYDDKNLLI 264 (694)
Q Consensus 192 g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t-----~~W~~l~~~-g~~P~~R~~hs~~~~~~~~lyv 264 (694)
.|..+|...+++.+ +++++|+||.... ..+.|.... ..|..+... ...+..-|-+....=+++ |++
T Consensus 113 -~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi 185 (243)
T PF07250_consen 113 -DMQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFI 185 (243)
T ss_pred -cccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEE
Confidence 48999999988876 6899999998732 122233211 123222211 123333343444444555 999
Q ss_pred EcCCCCCCCCCeEEEEEcCCCcE-EEeecc
Q 005493 265 FGGSSKSKTLNDLYSLDFETMIW-TRIKIR 293 (694)
Q Consensus 265 ~GG~~~~~~~~dv~~yd~~t~~W-~~l~~~ 293 (694)
|+.. +-.+||..++++ +.++..
T Consensus 186 ~an~-------~s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 186 FANR-------GSIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EEcC-------CcEEEeCCCCeEEeeCCCC
Confidence 9885 357889999987 667654
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.95 E-value=0.0029 Score=64.40 Aligned_cols=208 Identities=13% Similarity=0.114 Sum_probs=110.3
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceee-EEEEEC----C-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCC
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGH-TVVRAS----S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~-~~~~~~----~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P 246 (694)
..++++||.|++|..++.....+.....+ ....++ . +++.+...... .....+++|++.++.|+.+... .+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~--~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECS--PP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccC--CC
Confidence 37999999999999997411100001111 111122 1 55555443211 1345789999999999998621 22
Q ss_pred CCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-eeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcC
Q 005493 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (694)
Q Consensus 247 ~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~ 325 (694)
........+.+++. +|-+.-.........|..||+.+.+|.. ++.+............+.+++++.++...... ..-
T Consensus 91 ~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~~~ 168 (230)
T TIGR01640 91 HHPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT-NNF 168 (230)
T ss_pred CccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCC-CcE
Confidence 11112225667777 5555432211111269999999999995 54321111111234556678998887754321 125
Q ss_pred eEEEEE-CCCCcEEEeecCCCCC-CCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 326 ETLIFD-ILKGEWSVAITSPSSS-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 326 ~v~~yd-~~t~~W~~l~~~~~~~-p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
++|+.+ -....|++.-..+... +.....+....+.+ ++.|++..+. ....-+..||+.++
T Consensus 169 ~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~--~g~I~~~~~~--~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 169 DLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTD--KGEIVLCCED--ENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEee--CCEEEEEeCC--CCceEEEEEeccCC
Confidence 788886 4456799876554321 11111122222222 2456665543 11113888988764
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.95 E-value=0.0017 Score=66.22 Aligned_cols=202 Identities=12% Similarity=0.118 Sum_probs=113.1
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC----C-EEEEEccccCCCCCccEEEEEECCCCcEEEe
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG----K-KVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~----~-~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 188 (694)
..+.++||.|+.|..+++... + ...+... .....++ . +|+.+..... ......+.+|+..++.|+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~--~----~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~ 85 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKS--R----RSNKESD-TYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTI 85 (230)
T ss_pred CcEEEECCCCCCEEecCCCCC--c----ccccccc-eEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCcccc
Confidence 568999999999999985210 0 0001111 1111122 2 4555543211 11335789999999999998
Q ss_pred eecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEE-cccCCCCCCCc----ceeEEEEECCcEEE
Q 005493 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPR----SNHVAALYDDKNLL 263 (694)
Q Consensus 189 ~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-l~~~g~~P~~R----~~hs~~~~~~~~ly 263 (694)
... .+........+.++|.+|-+.-.... .....+..||+.+.+|.. ++ +|..+ ....++.++++ |.
T Consensus 86 ~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~-L~ 157 (230)
T TIGR01640 86 ECS--PPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGK-LA 157 (230)
T ss_pred ccC--CCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCE-EE
Confidence 731 12111122266789988888754321 111269999999999995 53 34332 23456677777 55
Q ss_pred EEcCCCCCCCCCeEEEEE-cCCCcEEEeeccCCCCCCCcc----eEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC
Q 005493 264 IFGGSSKSKTLNDLYSLD-FETMIWTRIKIRGFHPSPRAG----CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (694)
Q Consensus 264 v~GG~~~~~~~~dv~~yd-~~t~~W~~l~~~~~~p~~R~~----~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~ 335 (694)
++...... ..-++|+++ -....|+++-..+..+.+... ...+..+++|++..+... ..-+..||+.++
T Consensus 158 ~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccCC
Confidence 55433211 124677775 445679986554322222221 234455788888776311 113889998764
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.58 E-value=0.082 Score=58.41 Aligned_cols=255 Identities=15% Similarity=0.126 Sum_probs=135.4
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~ 149 (694)
....|+.-.-. ..+......+.++.+++||+.+.. ..+++||..++ .|+.-..... ...+...+....
T Consensus 44 ~~~~W~~~~g~-g~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~---~~~~~~~~~~~~ 113 (394)
T PRK11138 44 PTTVWSTSVGD-GVGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKD---GWFSKNKSALLS 113 (394)
T ss_pred cceeeEEEcCC-CCccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcc---cccccccccccc
Confidence 34568754311 112111223446678999997642 36899998875 6986443100 000000111222
Q ss_pred eEEEEECCEEEEEccccCCCCCccEEEEEECCCC--cEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceE
Q 005493 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (694)
Q Consensus 150 ~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 227 (694)
.+.++.+++||+.+.. ..++.+|.+++ .|+.-. +.. ...+.++.++.+|+..+ .+.++
T Consensus 114 ~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~-----~~~-~~ssP~v~~~~v~v~~~-------~g~l~ 173 (394)
T PRK11138 114 GGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV-----AGE-ALSRPVVSDGLVLVHTS-------NGMLQ 173 (394)
T ss_pred cccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC-----CCc-eecCCEEECCEEEEECC-------CCEEE
Confidence 3456678888875321 37999999876 487532 111 12223455778887532 24599
Q ss_pred EeeCCCCc--EEEcccCCCCCC--CcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC--cEEEeeccCC--CCC-
Q 005493 228 MFDLKSLT--WLPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPS- 298 (694)
Q Consensus 228 ~yd~~t~~--W~~l~~~g~~P~--~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~--~W~~l~~~~~--~p~- 298 (694)
.||+.+.+ |+.-. ..|. .+...+-++.++. +|+..+ + ..++.+|+.++ .|+.-...+. ...
T Consensus 174 ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~-v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 174 ALNESDGAVKWTVNL---DVPSLTLRGESAPATAFGG-AIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred EEEccCCCEeeeecC---CCCcccccCCCCCEEECCE-EEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchh
Confidence 99998876 87643 1221 1111223344444 555333 2 35888998876 4764321100 000
Q ss_pred --CCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC--cEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 299 --PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 299 --~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
.....+.++.++.+|+.+. . ..++++|+.+. .|+.-. . . + ...+.. .+.||+....
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~--~-~-~-----~~~~~~----~~~vy~~~~~- 303 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIVWKREY--G-S-V-----NDFAVD----GGRIYLVDQN- 303 (394)
T ss_pred cccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEEEeecC--C-C-c-----cCcEEE----CCEEEEEcCC-
Confidence 0112334556888888653 2 25899999886 487521 1 1 1 112222 2577776533
Q ss_pred CCCCCcEEEEECccCC
Q 005493 375 KEPSNQVEVLSIEKNE 390 (694)
Q Consensus 375 ~~~~~~v~~~di~~~~ 390 (694)
..++++|+.+.+
T Consensus 304 ----g~l~ald~~tG~ 315 (394)
T PRK11138 304 ----DRVYALDTRGGV 315 (394)
T ss_pred ----CeEEEEECCCCc
Confidence 368899987664
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.35 E-value=0.11 Score=57.41 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=107.7
Q ss_pred ceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCC
Q 005493 91 NHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168 (694)
Q Consensus 91 ~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~ 168 (694)
..+.++.++.||+.+. ...++++|..++ .|+.-... + ...+-++.++.+|+..+.
T Consensus 113 ~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~------------~--~~ssP~v~~~~v~v~~~~--- 169 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG------------E--ALSRPVVSDGLVLVHTSN--- 169 (394)
T ss_pred ccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC------------c--eecCCEEECCEEEEECCC---
Confidence 3445667888887432 236899999875 79765431 1 112234557888875332
Q ss_pred CCCccEEEEEECCCCc--EEEeeecCCCCC--cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEccc-
Q 005493 169 GSDRVSVWTFDTETEC--WSVVEAKGDIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHC- 241 (694)
Q Consensus 169 ~~~~~~v~~yd~~t~~--W~~~~~~g~~p~--~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~- 241 (694)
..++.||+.+++ |+.-.. .|. .+...+-++.++.+|+..+ ...++.+|+.+.+ |+.-..
T Consensus 170 ----g~l~ald~~tG~~~W~~~~~---~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 170 ----GMLQALNESDGAVKWTVNLD---VPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred ----CEEEEEEccCCCEeeeecCC---CCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheecccc
Confidence 379999998876 876431 221 1222233445666666432 1357888887764 864321
Q ss_pred -CCCCCCCc---ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECCEEEEE
Q 005493 242 -TGTGPSPR---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIA 315 (694)
Q Consensus 242 -~g~~P~~R---~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~~iyV~ 315 (694)
.+.....| ...+-++.++. +|+.+. + ..++.+|+.+++ |+.-.. .. ...+..++.||+.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~ 300 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGV-VYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLV 300 (394)
T ss_pred CCCccchhcccccCCCcEEECCE-EEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEE
Confidence 01000001 11223344555 776543 2 358999998764 775311 11 1235568999987
Q ss_pred cCCCCCCCcCeEEEEECCCC--cEEE
Q 005493 316 GGGSRKKRHAETLIFDILKG--EWSV 339 (694)
Q Consensus 316 GG~~~~~~~~~v~~yd~~t~--~W~~ 339 (694)
... ..++.+|+.+. .|+.
T Consensus 301 ~~~------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 301 DQN------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred cCC------CeEEEEECCCCcEEEcc
Confidence 642 35999999876 4764
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.19 E-value=0.29 Score=53.55 Aligned_cols=227 Identities=16% Similarity=0.171 Sum_probs=121.2
Q ss_pred eEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC
Q 005493 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (694)
Q Consensus 92 hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~ 169 (694)
.+.++.++.+|+.+.. ..+++||+.++ .|+.-... ....+.++.++.+|+.+..
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~---- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE--------------RLSGGVGADGGLVFVGTEK---- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC--------------CcccceEEcCCEEEEEcCC----
Confidence 4456678888876532 36899998875 58764431 0112234456777764321
Q ss_pred CCccEEEEEECCCCc--EEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCC
Q 005493 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTG 245 (694)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~ 245 (694)
..++.+|..+++ |+... +.. .....++.++.+|+..+ ...++.+|+.+.+ |+.-... +.
T Consensus 115 ---g~l~ald~~tG~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~ 177 (377)
T TIGR03300 115 ---GEVIALDAEDGKELWRAKL-----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PA 177 (377)
T ss_pred ---CEEEEEECCCCcEeeeecc-----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Cc
Confidence 379999998765 86532 211 12223445677777532 2458999998764 8754311 10
Q ss_pred CCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC--cEEEeeccCC--CCCCC---cceEEEEECCEEEEEcCC
Q 005493 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSPR---AGCCGVLCGTKWYIAGGG 318 (694)
Q Consensus 246 P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~--~W~~l~~~~~--~p~~R---~~~sav~~~~~iyV~GG~ 318 (694)
...+...+.++.++. +++|..+ ..++.+|+.++ .|+.-...+. ....+ ...+.++.++.+|+.+.
T Consensus 178 ~~~~~~~sp~~~~~~--v~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~- 249 (377)
T TIGR03300 178 LTLRGSASPVIADGG--VLVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY- 249 (377)
T ss_pred eeecCCCCCEEECCE--EEEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-
Confidence 011122233444543 4444432 25899998776 4764321100 00001 12233455788887653
Q ss_pred CCCCCcCeEEEEECCCC--cEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 319 SRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 319 ~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
. ..+++||+.+. .|..-. . ...+.++. .+.+|+... ...+.++|..+.+
T Consensus 250 ~-----g~l~a~d~~tG~~~W~~~~--~-------~~~~p~~~----~~~vyv~~~-----~G~l~~~d~~tG~ 300 (377)
T TIGR03300 250 Q-----GRVAALDLRSGRVLWKRDA--S-------SYQGPAVD----DNRLYVTDA-----DGVVVALDRRSGS 300 (377)
T ss_pred C-----CEEEEEECCCCcEEEeecc--C-------CccCceEe----CCEEEEECC-----CCeEEEEECCCCc
Confidence 2 25899999875 476521 1 01112222 256776542 2378899987664
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.96 E-value=0.52 Score=47.51 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=107.4
Q ss_pred EEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCC
Q 005493 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (694)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~ 171 (694)
.+..++.+|+.. ....+++||+.++ .|+.-.+. ......+..++.+|+..+.
T Consensus 32 ~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~~~~--------------~~~~~~~~~~~~v~v~~~~------ 85 (238)
T PF13360_consen 32 AVPDGGRVYVAS------GDGNLYALDAKTGKVLWRFDLPG--------------PISGAPVVDGGRVYVGTSD------ 85 (238)
T ss_dssp EEEETTEEEEEE------TTSEEEEEETTTSEEEEEEECSS--------------CGGSGEEEETTEEEEEETT------
T ss_pred EEEeCCEEEEEc------CCCEEEEEECCCCCEEEEeeccc--------------cccceeeecccccccccce------
Confidence 344788899884 2357899999876 57665431 1111246778899887622
Q ss_pred ccEEEEEECCCCc--EEE-eeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCC
Q 005493 172 RVSVWTFDTETEC--WSV-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGP 246 (694)
Q Consensus 172 ~~~v~~yd~~t~~--W~~-~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P 246 (694)
+.++.+|..+++ |+. .......+ .+.....++.++.+|+... ...++.+|+.+++ |......+...
T Consensus 86 -~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 86 -GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp -SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred -eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCC
Confidence 289999988765 873 43211111 2333344455666766643 3568999998775 77643111111
Q ss_pred CCc----ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECCEEEEEcCCCC
Q 005493 247 SPR----SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (694)
Q Consensus 247 ~~R----~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~ 320 (694)
.+. ...+..++.+..+|+..+... +..+|..++. |+.. .. . ........++.+|+.. ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~-~~- 221 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS-SD- 221 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-TT-
T ss_pred cceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-CC-
Confidence 110 011233333335888766442 6677999987 7332 21 1 1111344577888777 33
Q ss_pred CCCcCeEEEEECCCCc
Q 005493 321 KKRHAETLIFDILKGE 336 (694)
Q Consensus 321 ~~~~~~v~~yd~~t~~ 336 (694)
..++++|+++.+
T Consensus 222 ----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 222 ----GRLYALDLKTGK 233 (238)
T ss_dssp ----TEEEEEETTTTE
T ss_pred ----CEEEEEECCCCC
Confidence 369999999874
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.89 E-value=0.82 Score=49.97 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=100.8
Q ss_pred EEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCC
Q 005493 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (694)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~ 171 (694)
.++.++.+|+.+. + ..++.||+.++ .|+..... . ...+.+..++.+|+..+.
T Consensus 101 p~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~----------~----~~~~p~v~~~~v~v~~~~------ 154 (377)
T TIGR03300 101 VGADGGLVFVGTE-K-----GEVIALDAEDGKELWRAKLSS----------E----VLSPPLVANGLVVVRTND------ 154 (377)
T ss_pred eEEcCCEEEEEcC-C-----CEEEEEECCCCcEeeeeccCc----------e----eecCCEEECCEEEEECCC------
Confidence 3445677776432 2 46899998775 58764321 0 112234457777775431
Q ss_pred ccEEEEEECCCCc--EEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCCC
Q 005493 172 RVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPS 247 (694)
Q Consensus 172 ~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~ 247 (694)
..++.+|+.+++ |+..... .....+...+.+..++.+| +|.. ...++.+|+.+.+ |+.-. ..|.
T Consensus 155 -g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~---~~~~ 222 (377)
T TIGR03300 155 -GRLTALDAATGERLWTYSRVT-PALTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRV---ALPK 222 (377)
T ss_pred -CeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeecc---ccCC
Confidence 369999998764 7653310 0001122233345566554 4432 1358899987764 76432 1111
Q ss_pred C-----c---ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECCEEEEEcC
Q 005493 248 P-----R---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (694)
Q Consensus 248 ~-----R---~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG 317 (694)
. + ...+.++.++. +|+.+.. ..++.||++++. |+.-. + ...+.++.++.+|+...
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~-vy~~~~~------g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQ-VYAVSYQ------GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred CCCchhhhhccCCccEEECCE-EEEEEcC------CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC
Confidence 1 1 11222333443 6664432 359999997754 65421 1 11233456889988753
Q ss_pred CCCCCCcCeEEEEECCCC--cEEE
Q 005493 318 GSRKKRHAETLIFDILKG--EWSV 339 (694)
Q Consensus 318 ~~~~~~~~~v~~yd~~t~--~W~~ 339 (694)
...++++|..+. .|+.
T Consensus 288 ------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ------CCeEEEEECCCCcEEEcc
Confidence 135899999876 4765
No 58
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.53 E-value=1.1 Score=45.67 Aligned_cols=222 Identities=11% Similarity=0.039 Sum_probs=118.9
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEccccCCCCCccEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (694)
++.||+..- ....++.+++.+..-..+.. +. -.+++.. ++.+|+.... .+
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~-------------~~--~~G~~~~~~~g~l~v~~~~--------~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL-------------PG--PNGMAFDRPDGRLYVADSG--------GI 62 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES-------------SS--EEEEEEECTTSEEEEEETT--------CE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec-------------CC--CceEEEEccCCEEEEEEcC--------ce
Confidence 467887732 23579999999987766543 11 2334444 6788887543 34
Q ss_pred EEEECCCCcEEEeeec--CCCCCcceeeEEEEECCeEEEEccccCCCccc--cceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 176 WTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKRRKL--NDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 176 ~~yd~~t~~W~~~~~~--g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~--~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..+|+.+++++.+... +..+..+..-.++--++.+|+---........ ..+|++++. .+.+.+.. .+. .-
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~---~p 136 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG---FP 136 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES---SE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc---cc
Confidence 6669999999887643 11133444434444467877753222111112 679999998 66665532 111 12
Q ss_pred eEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCC--CcEEEeeccCCCCCCCcce-EEEEE-CCEEEEEcCCCCCCCcCe
Q 005493 252 HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGC-CGVLC-GTKWYIAGGGSRKKRHAE 326 (694)
Q Consensus 252 hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t--~~W~~l~~~~~~p~~R~~~-sav~~-~~~iyV~GG~~~~~~~~~ 326 (694)
.+++... ++.+|+.-- ..+.+++|++.. ..+.........+...... .+++. ++.|||..-.. ..
T Consensus 137 NGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~ 206 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GR 206 (246)
T ss_dssp EEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TE
T ss_pred cceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CE
Confidence 3455544 445666422 234699999863 3344322111112222122 23332 68899973222 36
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEE
Q 005493 327 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (694)
Q Consensus 327 v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~ 370 (694)
+++||+.-.....+.. |. . ..+.+++..++.+.|||.
T Consensus 207 I~~~~p~G~~~~~i~~-p~----~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 207 IVVFDPDGKLLREIEL-PV----P--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETTSCEEEEEE--SS----S--SEEEEEEESTTSSEEEEE
T ss_pred EEEECCCccEEEEEcC-CC----C--CEEEEEEECCCCCEEEEE
Confidence 9999999665655542 21 1 345555554455667664
No 59
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.36 E-value=2.7 Score=47.97 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~ 149 (694)
.+..|+.-. . . ......+-++.++.+|+.... ..++.+|+.+. .|+.-...... . ..+....
T Consensus 39 ~~~~W~~~~-~-~--~~~~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~-~-----~~~~~~~ 102 (488)
T cd00216 39 LKVAWTFST-G-D--ERGQEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPAD-R-----GCCDVVN 102 (488)
T ss_pred ceeeEEEEC-C-C--CCCcccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCcc-c-----ccccccc
Confidence 456786532 1 1 122333456778999986542 46899999875 69875431100 0 0001111
Q ss_pred eEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCc--EEEeeecCCCCCcceeeEEEEECCeEEEEccccCCC---ccc
Q 005493 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKL 223 (694)
Q Consensus 150 ~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~---~~~ 223 (694)
...+..+ +.||+... ...++.+|..+++ |+.-......+......+.++.++.+| +|..+... ...
T Consensus 103 ~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~ 174 (488)
T cd00216 103 RGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVR 174 (488)
T ss_pred CCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCC
Confidence 1234445 77776432 2379999998765 775431000000011223345566555 44332211 124
Q ss_pred cceEEeeCCCCc--EEEc
Q 005493 224 NDLHMFDLKSLT--WLPL 239 (694)
Q Consensus 224 ~~v~~yd~~t~~--W~~l 239 (694)
..++.||..+.+ |+.-
T Consensus 175 g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 175 GALRAYDVETGKLLWRFY 192 (488)
T ss_pred cEEEEEECCCCceeeEee
Confidence 678999998765 8753
No 60
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.35 E-value=0.055 Score=56.72 Aligned_cols=124 Identities=23% Similarity=0.309 Sum_probs=77.9
Q ss_pred EEccccC-CCC-CccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCCcEE
Q 005493 161 LVGGKTD-SGS-DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (694)
Q Consensus 161 v~GG~~~-~~~-~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 237 (694)
++||.-. .+. .+..+..||+.+.+|..+.. . -.. .-..+... ++++|+.|-.+.++.....+-.||..+.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~--~-i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN--G-ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC--C-ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 3455433 333 57899999999999998653 1 111 11233334 5677777766555434567999999999999
Q ss_pred EcccC--CCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeec
Q 005493 238 PLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 238 ~l~~~--g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
.+... ..+|.+....+....+...+++.|... .-..-+..|| ...|+.+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 88742 346766544443334444577777652 2233466665 889999865
No 61
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.27 E-value=1.7 Score=44.81 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEE-E-CCEEEEEccccCCCCCccEEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-W-GKKVLLVGGKTDSGSDRVSVWT 177 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~-~-~~~Iyv~GG~~~~~~~~~~v~~ 177 (694)
.+|+.++.+ ..+.+||+.++.-...-.. .... .+++. - +..+|+.++. .+.++.
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~----------~~~~---~~l~~~~dg~~l~~~~~~------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV----------GQRP---RGITLSKDGKLLYVCASD------SDTIQV 57 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC----------CCCC---CceEECCCCCEEEEEECC------CCeEEE
Confidence 466666643 3788899887653332210 0111 11222 2 3457777653 237899
Q ss_pred EECCCCcEEEeeecCCCCCcceeeEEEEE-C-CeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEE
Q 005493 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (694)
Q Consensus 178 yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~ 255 (694)
||+.+.+....-.. .+.+ ..++.. + +.+|+.++.+ +.+..||+.+.+-... .+.....++++
T Consensus 58 ~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~-----~~~~~~~~~~~ 121 (300)
T TIGR03866 58 IDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAE-----IPVGVEPEGMA 121 (300)
T ss_pred EECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeE-----eeCCCCcceEE
Confidence 99988776542211 1111 122232 3 3566654322 3588999987543221 11111123344
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC
Q 005493 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (694)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~ 335 (694)
...+..+++++.... +.++.||..+..-......+ .+..+.+..-+++.+++++... ..+.+||+.+.
T Consensus 122 ~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~ 189 (300)
T TIGR03866 122 VSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD----QRPRFAEFTADGKELWVSSEIG----GTVSVIDVATR 189 (300)
T ss_pred ECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC----CCccEEEECCCCCEEEEEcCCC----CEEEEEEcCcc
Confidence 444433555554322 24667888765443221111 1112222222455444444322 25889999876
Q ss_pred cE
Q 005493 336 EW 337 (694)
Q Consensus 336 ~W 337 (694)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.94 E-value=2.1 Score=42.96 Aligned_cols=210 Identities=20% Similarity=0.267 Sum_probs=116.2
Q ss_pred CcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceE--EEEECCEEEEEccccCCCCCccEEEEEECCCCc--EEE
Q 005493 114 DDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHS--LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSV 187 (694)
Q Consensus 114 ~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s--~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 187 (694)
..+.++|+.++ .|+.-.. . ...+.. .+..++.+|+..+ ...+++||..+++ |+.
T Consensus 3 g~l~~~d~~tG~~~W~~~~~------------~-~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG------------P-GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS------------S-SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECC------------C-CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEe
Confidence 35678898775 6877321 1 112222 4447889998842 2389999998876 654
Q ss_pred eeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEE-cccCCCCCCCcceeEEEEECCcEEEE
Q 005493 188 VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP-LHCTGTGPSPRSNHVAALYDDKNLLI 264 (694)
Q Consensus 188 ~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~-l~~~g~~P~~R~~hs~~~~~~~~lyv 264 (694)
-. +.+-.. ..+..++.+|+..+ -+.++.+|..+.+ |+. .......+ .+......+.++. +|+
T Consensus 63 ~~-----~~~~~~-~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 127 (238)
T PF13360_consen 63 DL-----PGPISG-APVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDR-LYV 127 (238)
T ss_dssp EC-----SSCGGS-GEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTE-EEE
T ss_pred ec-----cccccc-eeeecccccccccc-------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCE-EEE
Confidence 32 222111 24667888888751 1379999987765 984 43211111 2223334444444 555
Q ss_pred EcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCC--------cceEEEEECCEEEEEcCCCCCCCcCeEEEEECCC
Q 005493 265 FGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPR--------AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 265 ~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R--------~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
... ...++.+|++++. |..-... +... .....+..++.+|+..+... +..+|..+
T Consensus 128 ~~~------~g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~t 192 (238)
T PF13360_consen 128 GTS------SGKLVALDPKTGKLLWKYPVGE---PRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLAT 192 (238)
T ss_dssp EET------CSEEEEEETTTTEEEEEEESST---T-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTT
T ss_pred Eec------cCcEEEEecCCCcEEEEeecCC---CCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCC
Confidence 442 2469999998765 6654322 1111 11233334678888876442 66679999
Q ss_pred Cc--EEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 335 GE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 335 ~~--W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
.. |+... . . ...... ...+.+|+.. . ...+.++|+.+.+
T Consensus 193 g~~~w~~~~--~-----~---~~~~~~--~~~~~l~~~~-~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 193 GEKLWSKPI--S-----G---IYSLPS--VDGGTLYVTS-S----DGRLYALDLKTGK 233 (238)
T ss_dssp TEEEEEECS--S---------ECECEE--CCCTEEEEEE-T----TTEEEEEETTTTE
T ss_pred CCEEEEecC--C-----C---ccCCce--eeCCEEEEEe-C----CCEEEEEECCCCC
Confidence 86 84421 1 1 111011 2235666655 2 2478999998876
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.80 E-value=0.59 Score=49.11 Aligned_cols=120 Identities=19% Similarity=0.321 Sum_probs=77.5
Q ss_pred EcC-CCCCC--CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEccccCCCCCccEEEEEE
Q 005493 104 VGG-ESGNG--LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 179 (694)
Q Consensus 104 ~GG-~~~~~--~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd 179 (694)
+|| +...+ .+..++.||+.+.+|..+... +.. .-..+... ++++|+.|-....+.....+-.||
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~-----------i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG-----------ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCCEeecCCCC-----------ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence 455 44444 478999999999999998762 211 12344444 678888876655554566799999
Q ss_pred CCCCcEEEeeec--CCCCCcceeeEEEEEC-CeEEEEccccCCCccccceEEeeCCCCcEEEcc
Q 005493 180 TETECWSVVEAK--GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (694)
Q Consensus 180 ~~t~~W~~~~~~--g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~ 240 (694)
..+.+|..+... ..+|.+.........+ +.+++.|.. ..+ ..-+..| +..+|..+.
T Consensus 71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKY--DGSSWSSIG 129 (281)
T ss_pred cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEE--cCCceEecc
Confidence 999999988752 2456554333333223 478877776 322 3446666 467899886
No 64
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.76 E-value=4.6 Score=45.48 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..+|.+|+.+++-..+.. .+..-. ..+. -++ .|++....++ ..++|.+|+.+++.+.+... .. ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~--~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~~-~~ 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGING--APRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---RA-ID 308 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcC--CeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---CC-Cc
Confidence 589999999888766652 221111 1222 233 4555433322 25799999999998887521 11 11
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~y 330 (694)
......-+++.|++...... ..++|++|+.++.++.+...+... ...+....++.||+.+. ... ...++.+
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~~SpDG~~l~~~~~-~~g--~~~I~~~ 379 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQN---LGGSITPDGRSMIMVNR-TNG--KFNIARQ 379 (448)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCCC---cCeeECCCCCEEEEEEe-cCC--ceEEEEE
Confidence 11112224454444432222 257999999999998886422111 11111112445555443 221 2468999
Q ss_pred ECCCCcEEEee
Q 005493 331 DILKGEWSVAI 341 (694)
Q Consensus 331 d~~t~~W~~l~ 341 (694)
|+.+.....+.
T Consensus 380 dl~~g~~~~lt 390 (448)
T PRK04792 380 DLETGAMQVLT 390 (448)
T ss_pred ECCCCCeEEcc
Confidence 99998877654
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.76 E-value=0.39 Score=52.09 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=77.4
Q ss_pred ECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccc----cceEEe-
Q 005493 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKL----NDLHMF- 229 (694)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~y- 229 (694)
.+++|+..++. ..+.+||..+..-...+ .++.+.....++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 58899998665 24889999999888666 4666666667777899999998774331110 144444
Q ss_pred -e--------CCCCcEEEcccCCCCCCCcce-------eEEEEECCcEEEE-EcCCCCCCCCCeEEEEEcCCCcEEEeec
Q 005493 230 -D--------LKSLTWLPLHCTGTGPSPRSN-------HVAALYDDKNLLI-FGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 230 -d--------~~t~~W~~l~~~g~~P~~R~~-------hs~~~~~~~~lyv-~GG~~~~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
+ .....|..++ +.|..+.. .+-+++++..|+| .-|.. .-.|.||..+.+|+.+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 3 2344688775 33433322 2334445666777 43321 238999999999999954
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.72 E-value=0.17 Score=54.86 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=92.0
Q ss_pred CeEEEEccccCCCccccceEEeeCCCCcE-EEcccCCCCCCCcceeEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCCC
Q 005493 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM 285 (694)
Q Consensus 208 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~l~~~g~~P~~R~~hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~ 285 (694)
..+.+.+|.+.. -.+|..|-.++.- +.+... ..| .. +++... +...++++|+.. -+|.||+.+.
T Consensus 225 ~plllvaG~d~~----lrifqvDGk~N~~lqS~~l~-~fP--i~--~a~f~p~G~~~i~~s~rrk-----y~ysyDle~a 290 (514)
T KOG2055|consen 225 APLLLVAGLDGT----LRIFQVDGKVNPKLQSIHLE-KFP--IQ--KAEFAPNGHSVIFTSGRRK-----YLYSYDLETA 290 (514)
T ss_pred CceEEEecCCCc----EEEEEecCccChhheeeeec-cCc--cc--eeeecCCCceEEEecccce-----EEEEeecccc
Confidence 578999998764 3466666666552 111111 122 22 223332 333677777754 3899999999
Q ss_pred cEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCc
Q 005493 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (694)
Q Consensus 286 ~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~ 365 (694)
.-+++..+...+.+-...-.+..++.++++-|..+- |+++..+++.|..--..+ ...+...+...+ .
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~eli~s~Kie-------G~v~~~~fsSds-k 357 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTKELITSFKIE-------GVVSDFTFSSDS-K 357 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCce-----EEeehhhhhhhhheeeec-------cEEeeEEEecCC-c
Confidence 999987754444322222334455667777776553 888888999886532211 123334444333 5
Q ss_pred EEEEEcCCCCCCCCcEEEEECccCC
Q 005493 366 FLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 366 ~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
.||+.||++ .||++|+..+.
T Consensus 358 ~l~~~~~~G-----eV~v~nl~~~~ 377 (514)
T KOG2055|consen 358 ELLASGGTG-----EVYVWNLRQNS 377 (514)
T ss_pred EEEEEcCCc-----eEEEEecCCcc
Confidence 899999987 89999998875
No 67
>PRK13684 Ycf48-like protein; Provisional
Probab=95.69 E-value=3.9 Score=44.16 Aligned_cols=242 Identities=13% Similarity=0.150 Sum_probs=118.1
Q ss_pred CCCceEEeeccCCCCCCc-cceEEEEECCEEEEEcCCCCCCCcCcEEEEECCC--CcEEEcccccccCCCCCCCCCCCcc
Q 005493 72 NSENWMVLSIAGDKPIPR-FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACR 148 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R-~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~p~~~~~~~p~r~ 148 (694)
.-..|+.+... .|... ...++.+.++..|+.|. . .. +|.... .+|+.+... ...|..
T Consensus 74 gG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~-~-----g~--i~~S~DgG~tW~~~~~~---------~~~~~~- 133 (334)
T PRK13684 74 GGETWEERSLD--LPEENFRLISISFKGDEGWIVGQ-P-----SL--LLHTTDGGKNWTRIPLS---------EKLPGS- 133 (334)
T ss_pred CCCCceECccC--CcccccceeeeEEcCCcEEEeCC-C-----ce--EEEECCCCCCCeEccCC---------cCCCCC-
Confidence 35689987532 22222 22233334555676653 1 11 333333 599988641 011111
Q ss_pred ceEEEEE-CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceE
Q 005493 149 GHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (694)
Q Consensus 149 ~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 227 (694)
.+.+..+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+....+..|+..|..+ .++
T Consensus 134 ~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~ 196 (334)
T PRK13684 134 PYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFY 196 (334)
T ss_pred ceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEE
Confidence 1223333 3556666543 256766666789998763 222233444444444444444332 233
Q ss_pred Ee-eCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEE--EcCCCcEEEeeccCCCCCCCcceE
Q 005493 228 MF-DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL--DFETMIWTRIKIRGFHPSPRAGCC 304 (694)
Q Consensus 228 ~y-d~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~y--d~~t~~W~~l~~~~~~p~~R~~~s 304 (694)
.- |....+|+.+. .+..+.-++++...+..++++|... ..++ +-...+|+.+... ........++
T Consensus 197 ~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~ 264 (334)
T PRK13684 197 STWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIP-EITNGYGYLD 264 (334)
T ss_pred EEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCC-ccccccceee
Confidence 32 34446799884 3445555666665555478877542 2334 2234589976431 1111112233
Q ss_pred EEEE-CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 305 GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 305 av~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
++.. ++.+|++|... .++.-.-.-.+|+.+.... .. +...+.++... .+..|++|...
T Consensus 265 v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~-~~--~~~~~~~~~~~---~~~~~~~G~~G 323 (334)
T PRK13684 265 LAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGE-EV--PSNFYKIVFLD---PEKGFVLGQRG 323 (334)
T ss_pred EEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCC-CC--CcceEEEEEeC---CCceEEECCCc
Confidence 3333 56788887632 2333333456899864211 11 12233444332 34678888754
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.60 E-value=0.69 Score=50.44 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE-EEEEccccCCCCCccEEEE
Q 005493 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK-VLLVGGKTDSGSDRVSVWT 177 (694)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~-Iyv~GG~~~~~~~~~~v~~ 177 (694)
-.+.+.+|+++. -.++..|-.++. .+..+- +.-.+.. .+...-+|. .++++|.. .-+|.
T Consensus 225 ~plllvaG~d~~---lrifqvDGk~N~--~lqS~~--------l~~fPi~-~a~f~p~G~~~i~~s~rr------ky~ys 284 (514)
T KOG2055|consen 225 APLLLVAGLDGT---LRIFQVDGKVNP--KLQSIH--------LEKFPIQ-KAEFAPNGHSVIFTSGRR------KYLYS 284 (514)
T ss_pred CceEEEecCCCc---EEEEEecCccCh--hheeee--------eccCccc-eeeecCCCceEEEecccc------eEEEE
Confidence 348888997743 234444555544 333311 0001111 122222444 77777653 36999
Q ss_pred EECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE
Q 005493 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (694)
Q Consensus 178 yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 257 (694)
||+.+.+...+.+...++..-...--+...+.++++-|..+ .++.+...|+.|..-- .++.-....+.. -
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~~~fs-S 354 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSDFTFS-S 354 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEeeEEEe-c
Confidence 99999999888754444422222122334556777766543 4777777888875322 333333333333 4
Q ss_pred CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEEEECCC
Q 005493 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
+++.||+.||++ .||+||+..+.....-.. --+-++-+.|. .++.++..|--.+ =+-+||.++
T Consensus 355 dsk~l~~~~~~G------eV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~ylA~GS~~G-----iVNIYd~~s 418 (514)
T KOG2055|consen 355 DSKELLASGGTG------EVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSYLATGSDSG-----IVNIYDGNS 418 (514)
T ss_pred CCcEEEEEcCCc------eEEEEecCCcceEEEEee---cCccceeeeeecCCCceEEeccCcc-----eEEEeccch
Confidence 556799999875 599999988754332211 11223333332 3555444443333 255777544
No 69
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.59 E-value=5.2 Score=44.81 Aligned_cols=187 Identities=13% Similarity=0.052 Sum_probs=93.7
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..+|++|+.++....+.. .+..-... ...-++ .|++....++ ..++|.+|+.+.....+.. .+.. ..
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~-~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~---~~~~-~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAP-RFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD---SPAI-DT 293 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCc-EECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---CCCc-cC
Confidence 589999999998877652 22211111 111234 4544433222 3679999999988877752 2211 11
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEE-EECCEEEEEcCCCCCCCcCeEEEE
Q 005493 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV-LCGTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 252 hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav-~~~~~iyV~GG~~~~~~~~~v~~y 330 (694)
.....-+++.|++.....+ ..++|++|+.+...+.+... ......... ..++.|++.....+ ...++++
T Consensus 294 ~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~~i~~~ 363 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QFSIGVM 363 (435)
T ss_pred ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ceEEEEE
Confidence 1122223443443322211 25799999988888777542 111111111 12445554432111 2468999
Q ss_pred ECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCC
Q 005493 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (694)
Q Consensus 331 d~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~ 390 (694)
|+.......+.. .. ......+..++ ..|+......+.. ...++.+++....
T Consensus 364 d~~~~~~~~lt~--~~------~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 364 KPDGSGERILTS--GF------LVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECCCCceEeccC--CC------CCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence 987766655431 10 11222333333 3454433322221 2578888886544
No 70
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.44 E-value=0.44 Score=51.64 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=75.7
Q ss_pred ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCC-----eEEEE
Q 005493 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN-----DLYSL 280 (694)
Q Consensus 206 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~-----dv~~y 280 (694)
.+++|+..+.. ....+||..+..-...+ .++.+.....++.++++ ||++.......... .++++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 57888888654 34789999998877554 56666667777888888 99998764321111 33344
Q ss_pred --E--------cCCCcEEEeeccCCCCCCCc-------ceEEEEE-CCEEEE-EcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 281 --D--------FETMIWTRIKIRGFHPSPRA-------GCCGVLC-GTKWYI-AGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 281 --d--------~~t~~W~~l~~~~~~p~~R~-------~~sav~~-~~~iyV-~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
+ ...-.|..++.. |..+. -.+-+++ +..|+| .-|.. .-+|.||..+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 3 223467776542 43322 2344455 678888 55432 23899999999999975
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.16 E-value=6.5 Score=43.38 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=79.9
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..++++|+.++....+.. .+..... .+. -++ .|++....++ ..++|.+|+.+...+.+...... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~--~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~---~~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA--PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGI---DT 281 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc--eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCC---CC
Confidence 589999999987766552 2221111 222 234 4555433222 25799999998888777532111 11
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLI 329 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~ 329 (694)
.. ...-+++.|++...... ..++|++|+.+..+..+...+ ......+. -+++.+++..... ....++.
T Consensus 282 ~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~ 350 (417)
T TIGR02800 282 EP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAV 350 (417)
T ss_pred CE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEE
Confidence 11 11124453444433222 247999999998888775431 22222222 2455555554332 2347999
Q ss_pred EECCCCcEEEee
Q 005493 330 FDILKGEWSVAI 341 (694)
Q Consensus 330 yd~~t~~W~~l~ 341 (694)
+|+.+..+..+.
T Consensus 351 ~d~~~~~~~~l~ 362 (417)
T TIGR02800 351 MDLDGGGERVLT 362 (417)
T ss_pred EeCCCCCeEEcc
Confidence 999987776654
No 72
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.63 E-value=9.5 Score=42.67 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=79.7
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
...+|++|+.+++...+.. .+.. .......-++ +|++....++ ..++|++|+.+...+.+... +..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~---~~g~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~~~-- 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVAS---FRGI-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---FGI-- 293 (433)
T ss_pred CcEEEEEECCCCCEEEecc---CCCC-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---CCC--
Confidence 3579999999988776652 2211 1111112234 4544432222 25799999999887776521 111
Q ss_pred eeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE--ECCEEEEEcCCCCCCCcCeE
Q 005493 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAET 327 (694)
Q Consensus 251 ~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~--~~~~iyV~GG~~~~~~~~~v 327 (694)
....+.. +++.|++.....+ ..++|.+|+.++.++.+...+ ........ .++.|++..+..+ ...+
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~---~~~I 362 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG---QYRI 362 (433)
T ss_pred ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCCC---ceeE
Confidence 1112233 3443443332222 257999999998888876431 12222222 2456666544221 2368
Q ss_pred EEEECCCCcEEEee
Q 005493 328 LIFDILKGEWSVAI 341 (694)
Q Consensus 328 ~~yd~~t~~W~~l~ 341 (694)
+++|+.+..+..+.
T Consensus 363 ~v~d~~~g~~~~Lt 376 (433)
T PRK04922 363 AVMDLSTGSVRTLT 376 (433)
T ss_pred EEEECCCCCeEECC
Confidence 99999988887654
No 73
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.57 E-value=7.6 Score=41.30 Aligned_cols=242 Identities=16% Similarity=0.178 Sum_probs=109.5
Q ss_pred CCCceEEeeccCCCCCCccceEEEEE-CCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCC-Cc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIP-AC 147 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p-~r 147 (694)
....|+.+. .|....-..+.++ .+.-|++|-.. .+|-.. -.+|...... ...+ ..
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~g--------~il~T~DGG~tW~~~~~~---------~~~~~~~ 62 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAYG--------TILKTTDGGKTWQPVSLD---------LDNPFDY 62 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETTT--------EEEEESSTTSS-EE--------------S-----
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecCC--------EEEEECCCCccccccccC---------CCcccee
Confidence 567899996 4444445555555 46688887421 233332 3589988742 1122 22
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccce
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDL 226 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v 226 (694)
...++...++..|+.|... -++.-.-.-.+|+.++....+|- ..+.+.. -++.++++|.. ..+
T Consensus 63 ~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~~~lpg--s~~~i~~l~~~~~~l~~~~-------G~i 126 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLSSKLPG--SPFGITALGDGSAELAGDR-------GAI 126 (302)
T ss_dssp EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE----TT-SS---EEEEEEEETTEEEEEETT---------E
T ss_pred eEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecCCCCCC--CeeEEEEcCCCcEEEEcCC-------CcE
Confidence 3344555678899886431 34554445688999874323332 3333333 45677777532 345
Q ss_pred EEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEE
Q 005493 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (694)
Q Consensus 227 ~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav 306 (694)
|+=.-.-.+|+.+.. +..-.-..+....+..+++++.... -+...|+-...|...... ..|.-.++.
T Consensus 127 y~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G~-----~~~s~~~G~~~w~~~~r~----~~~riq~~g 193 (302)
T PF14870_consen 127 YRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSRGN-----FYSSWDPGQTTWQPHNRN----SSRRIQSMG 193 (302)
T ss_dssp EEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETTSS-----EEEEE-TT-SS-EEEE------SSS-EEEEE
T ss_pred EEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECccc-----EEEEecCCCccceEEccC----ccceehhce
Confidence 555545678998752 1112222334445554555554332 133567777889998763 445555555
Q ss_pred EE-CCEEEEEcCCCCCCCcCeEEEEE--CCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 307 LC-GTKWYIAGGGSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 307 ~~-~~~iyV~GG~~~~~~~~~v~~yd--~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
.. ++.++++. ..+ .++.-+ -...+|.+.. .|....++...-+.....+.+++.||..
T Consensus 194 f~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~-----~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 194 FSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI-----IPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc-----CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 54 56777765 222 244444 3446787732 1223344444444444557899999985
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.33 E-value=2.9 Score=46.00 Aligned_cols=215 Identities=19% Similarity=0.249 Sum_probs=112.4
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCc-EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
+++|+..|+..+ -+.+||..+.. -+.+.. ...| ...--.+..++.++++|+-+ ..+-
T Consensus 79 DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~a----------h~ap-v~~~~f~~~d~t~l~s~sDd------~v~k 136 (487)
T KOG0310|consen 79 DGRLLAAGDESG-----HVKVFDMKSRVILRQLYA----------HQAP-VHVTKFSPQDNTMLVSGSDD------KVVK 136 (487)
T ss_pred CCeEEEccCCcC-----cEEEeccccHHHHHHHhh----------ccCc-eeEEEecccCCeEEEecCCC------ceEE
Confidence 688999998664 47889955521 111111 0111 11122345688999998743 1455
Q ss_pred EEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCC-cEEEcccCCCCCCCcceeEEE
Q 005493 177 TFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVAA 255 (694)
Q Consensus 177 ~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~l~~~g~~P~~R~~hs~~ 255 (694)
.+|..+..- .....+.--.-|++ ++...++.|++-||+++. +-.||+.+. .|.. +..-..|.. .++
T Consensus 137 ~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~-elnhg~pVe----~vl 203 (487)
T KOG0310|consen 137 YWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVV-ELNHGCPVE----SVL 203 (487)
T ss_pred EEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeE-EecCCCcee----eEE
Confidence 556665553 33333332333433 333457889999999865 566777666 4432 111122221 345
Q ss_pred EECC-cEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcce-----EEEEE-CCEEEEEcCCCCCCCcCeEE
Q 005493 256 LYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-----CGVLC-GTKWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 256 ~~~~-~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~-----sav~~-~~~iyV~GG~~~~~~~~~v~ 328 (694)
.+.+ ..|...|| |.+-++|+.++.=. +..+..| |.... ++.-++-||.++. +-
T Consensus 204 ~lpsgs~iasAgG-------n~vkVWDl~~G~ql--------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----VK 263 (487)
T KOG0310|consen 204 ALPSGSLIASAGG-------NSVKVWDLTTGGQL--------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----VK 263 (487)
T ss_pred EcCCCCEEEEcCC-------CeEEEEEecCCcee--------hhhhhcccceEEEEEeecCCceEeecccccc-----eE
Confidence 5555 44556666 45788888754311 1122212 22222 4567778887765 77
Q ss_pred EEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC
Q 005493 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (694)
Q Consensus 329 ~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~ 376 (694)
+||+. .|+.+- ....|.+. .++.+.. .+.-+++|+.++-
T Consensus 264 Vfd~t--~~Kvv~--s~~~~~pv--Lsiavs~---dd~t~viGmsnGl 302 (487)
T KOG0310|consen 264 VFDTT--NYKVVH--SWKYPGPV--LSIAVSP---DDQTVVIGMSNGL 302 (487)
T ss_pred EEEcc--ceEEEE--eeecccce--eeEEecC---CCceEEEecccce
Confidence 89844 466554 22222222 2222222 3456677777654
No 75
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.31 E-value=4.1 Score=42.11 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=102.6
Q ss_pred CCEEEEEccccCCCCCccEEEEEECC-----CCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEee
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTE-----TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~-----t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 230 (694)
.+++|++.|.... .++.|... .+.+...- .+|.+-.+.+.+++++.+|..-. ..+.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5688998876432 66666432 22233222 36777777788889999888743 357899999
Q ss_pred CCCCcEE---EcccCCC---CCCCcce---eEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCc
Q 005493 231 LKSLTWL---PLHCTGT---GPSPRSN---HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (694)
Q Consensus 231 ~~t~~W~---~l~~~g~---~P~~R~~---hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~ 301 (694)
+.++.-. .++..+. .|....+ .-.++-.+. |+|+=......-.--|-++|+.+..-...-... .+.+..
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-~~k~~~ 173 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-YPKRSA 173 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEec-cCchhh
Confidence 9988755 3321111 1111111 223333445 555433322211123556677654322222211 233333
Q ss_pred ceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEc
Q 005493 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (694)
Q Consensus 302 ~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~G 371 (694)
+ .+.++-|.+|++...+... ..=.+.||+.+++=..+.. ..+.....++++-..+.+ ..||+.-
T Consensus 174 ~-naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i---~f~~~~~~~~~l~YNP~d-k~LY~wd 237 (250)
T PF02191_consen 174 G-NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI---PFPNPYGNISMLSYNPRD-KKLYAWD 237 (250)
T ss_pred c-ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceee---eeccccCceEeeeECCCC-CeEEEEE
Confidence 3 3455568899988876543 2224799999887654332 222333345554444433 4677653
No 76
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.20 E-value=9.2 Score=40.78 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCC-CcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEccccCCCCCccEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~--~~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
.+|+..+.. +.+.+||..+ ..++.+... +... ..+.++. .++.+|+.+. . ...+.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~----------~~~~-~~~~l~~spd~~~lyv~~~-~-----~~~i~ 60 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVV----------DVPG-QVQPMVISPDKRHLYVGVR-P-----EFRVL 60 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEE----------ecCC-CCccEEECCCCCEEEEEEC-C-----CCcEE
Confidence 467775432 5677888754 567665541 1111 1112222 2345666432 1 13566
Q ss_pred EEECC-CCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCCCCcce
Q 005493 177 TFDTE-TECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSN 251 (694)
Q Consensus 177 ~yd~~-t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~~R~~ 251 (694)
.|++. ++++..+.. .+.+-..+.++. -++ .+|+.. +. .+.+.+|++.++. ...+. ..+....-
T Consensus 61 ~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~ 128 (330)
T PRK11028 61 SYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGC 128 (330)
T ss_pred EEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcc
Confidence 66664 566765542 222111122333 234 455543 22 2567778775432 11121 12222233
Q ss_pred eEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCCC-cEEEeecc-CCCCCCCcceEEEEE--CCEEEEEcCCCCCCCcCe
Q 005493 252 HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIR-GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAE 326 (694)
Q Consensus 252 hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~-~W~~l~~~-~~~p~~R~~~sav~~--~~~iyV~GG~~~~~~~~~ 326 (694)
|.+++.. ++.+|+..-. .+.|.+||+.+. ........ ...+.+..-+.++.. +..+|+.-... +.
T Consensus 129 ~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----~~ 198 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----SS 198 (330)
T ss_pred cEeEeCCCCCEEEEeeCC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----CE
Confidence 5555553 4456654322 246999998763 22211000 001111111122332 34677764432 35
Q ss_pred EEEEECC--CCcEEEeec---CCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 327 TLIFDIL--KGEWSVAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 327 v~~yd~~--t~~W~~l~~---~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
+.+||++ +.+++.+.. .|...+.++ +.+.+.-++++.++|+... ..+.+-+|++..+
T Consensus 199 v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~~~ 260 (330)
T PRK11028 199 VDVWQLKDPHGEIECVQTLDMMPADFSDTR--WAADIHITPDGRHLYACDR----TASLISVFSVSED 260 (330)
T ss_pred EEEEEEeCCCCCEEEEEEEecCCCcCCCCc--cceeEEECCCCCEEEEecC----CCCeEEEEEEeCC
Confidence 7777776 345443322 222212222 3332332345557877522 2346777777544
No 77
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.20 E-value=11 Score=41.84 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=79.6
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..+|++|+.+++-+.+.. .+. ........ ++ +|++..-.++ ..++|++|+.+..++.+.. .+. ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~~-~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN---HPA-ID 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc---CCC-Cc
Confidence 489999999988777652 111 11112222 34 4443322221 2579999999999887752 111 11
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE--ECCEEEEEcCCCCCCCcCeEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~--~~~~iyV~GG~~~~~~~~~v~ 328 (694)
......-+++.|++..... ...++|++|+.++.++.+...+ ........ .++.|++.....+ ...++
T Consensus 290 ~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~ 358 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NFHVA 358 (430)
T ss_pred CCeEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ceEEE
Confidence 1111122444344443222 1357999999999988875421 11111121 2455655543222 23699
Q ss_pred EEECCCCcEEEee
Q 005493 329 IFDILKGEWSVAI 341 (694)
Q Consensus 329 ~yd~~t~~W~~l~ 341 (694)
++|+.+..++.+.
T Consensus 359 ~~dl~tg~~~~lt 371 (430)
T PRK00178 359 AQDLQRGSVRILT 371 (430)
T ss_pred EEECCCCCEEEcc
Confidence 9999998887764
No 78
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.14 E-value=12 Score=43.13 Aligned_cols=221 Identities=13% Similarity=0.077 Sum_probs=111.1
Q ss_pred eEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC
Q 005493 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (694)
Q Consensus 92 hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~ 169 (694)
.+-+++++.||+... ...++++|..++ .|+.-........ +.........+.+..+++||+...
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~---~~~~~~~~~rg~av~~~~v~v~t~----- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVI---PVMCCDVVNRGVALYDGKVFFGTL----- 128 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccc---cccccccccccceEECCEEEEEcC-----
Confidence 345567888998654 236899999885 6886543100000 000000011234556788886432
Q ss_pred CCccEEEEEECCCCc--EEEeeecCCCCCc-ceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCC
Q 005493 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGT 244 (694)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~ 244 (694)
...++++|..|++ |+.-.. +.... ....+-++.++.+|+-..... ......++.||.++.+ |+.-...+.
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~~p~~ 203 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYTVPGD 203 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccCcCCC
Confidence 1379999998876 764321 11111 122234456777766432111 1134578999998875 764432111
Q ss_pred C-------------C------C---CcceeE---EEEEC--CcEEEEEcCC----C------CCCCCCeEEEEEcCCCc-
Q 005493 245 G-------------P------S---PRSNHV---AALYD--DKNLLIFGGS----S------KSKTLNDLYSLDFETMI- 286 (694)
Q Consensus 245 ~-------------P------~---~R~~hs---~~~~~--~~~lyv~GG~----~------~~~~~~dv~~yd~~t~~- 286 (694)
. | . .+.+.. ...++ ...+|+-=|. . ...+.+.+..+|++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~ 283 (527)
T TIGR03075 204 MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI 283 (527)
T ss_pred cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE
Confidence 0 0 0 011111 11333 2345553332 1 12356789999999864
Q ss_pred -EEEeeccCCCCCCCc--ceEEEE--ECCE---EEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 287 -WTRIKIRGFHPSPRA--GCCGVL--CGTK---WYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 287 -W~~l~~~~~~p~~R~--~~sav~--~~~~---iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
|.-.....+...-=. ....+- .+++ +++.+.-++ .+|++|..+.+
T Consensus 284 ~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-----~~~vlDr~tG~ 336 (527)
T TIGR03075 284 KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-----FFYVLDRTNGK 336 (527)
T ss_pred EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-----eEEEEECCCCc
Confidence 776654322211111 112221 2443 676776554 48888888764
No 79
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.08 E-value=9.6 Score=40.54 Aligned_cols=245 Identities=16% Similarity=0.206 Sum_probs=105.3
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceE
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS 151 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s 151 (694)
--.+|+.+....+.+......++...++..||+|-.. -++.-.-...+|..++.. .+.|......
T Consensus 45 GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g------~ll~T~DgG~tW~~v~l~---------~~lpgs~~~i 109 (302)
T PF14870_consen 45 GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG------LLLHTTDGGKTWERVPLS---------SKLPGSPFGI 109 (302)
T ss_dssp TTSS-EE-----S-----EEEEEEEETTEEEEEEETT------EEEEESSTTSS-EE-------------TT-SS-EEEE
T ss_pred CCccccccccCCCccceeeEEEEEecCCceEEEcCCc------eEEEecCCCCCcEEeecC---------CCCCCCeeEE
Confidence 5678998864222221223344555688899987421 122222234699998741 1233322223
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceE-Ee
Q 005493 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH-MF 229 (694)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~-~y 229 (694)
.+.-++.++++|.. ..+|+-.-.-.+|+.+.. +..-.-..+... ++.+++++.. ..++ ..
T Consensus 110 ~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~-------G~~~~s~ 171 (302)
T PF14870_consen 110 TALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR-------GNFYSSW 171 (302)
T ss_dssp EEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT-------SSEEEEE
T ss_pred EEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc-------ccEEEEe
Confidence 33345677777643 257776666789998763 111122223333 4566666532 2233 45
Q ss_pred eCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEE--cCCCcEEEeeccCCCCCCCcceE-EE
Q 005493 230 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD--FETMIWTRIKIRGFHPSPRAGCC-GV 306 (694)
Q Consensus 230 d~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd--~~t~~W~~l~~~~~~p~~R~~~s-av 306 (694)
|+-...|.... .+..|.--+|....+..+++.. ..+ .++.=+ ....+|.+.... .+....++- ++
T Consensus 172 ~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a 239 (302)
T PF14870_consen 172 DPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPIIP--IKTNGYGILDLA 239 (302)
T ss_dssp -TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-T--TSS--S-EEEEE
T ss_pred cCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccCC--cccCceeeEEEE
Confidence 77777899884 5566777777777776576654 222 244444 345677773321 112233222 33
Q ss_pred EE-CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCC
Q 005493 307 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (694)
Q Consensus 307 ~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~ 373 (694)
.. ++.+++.||... +++=.-.-++|++..... ..+..-+..+.+. .+.-+|+|..
T Consensus 240 ~~~~~~~wa~gg~G~------l~~S~DgGktW~~~~~~~---~~~~n~~~i~f~~---~~~gf~lG~~ 295 (302)
T PF14870_consen 240 YRPPNEIWAVGGSGT------LLVSTDGGKTWQKDRVGE---NVPSNLYRIVFVN---PDKGFVLGQD 295 (302)
T ss_dssp ESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGT---TSSS---EEEEEE---TTEEEEE-ST
T ss_pred ecCCCCEEEEeCCcc------EEEeCCCCccceECcccc---CCCCceEEEEEcC---CCceEEECCC
Confidence 33 588999988542 333334457899875321 1122234444443 2466777764
No 80
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.81 E-value=16 Score=42.14 Aligned_cols=216 Identities=15% Similarity=0.160 Sum_probs=109.5
Q ss_pred EEECCEEEEEccccCCCCCccEEEEEECCCCc--EEEeeecC-CC-C---CcceeeEEEEECCeEEEEccccCCCccccc
Q 005493 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKG-DI-P---VARSGHTVVRASSVLILFGGEDGKRRKLND 225 (694)
Q Consensus 153 v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g-~~-p---~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~ 225 (694)
++.++.||+.... ..|+.+|..+++ |+.-.... .. + ........++.++++|+.. .-..
T Consensus 66 vv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~ 131 (527)
T TIGR03075 66 LVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDAR 131 (527)
T ss_pred EEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCE
Confidence 4568999986442 268999988764 87543110 01 0 0011223456677877642 1246
Q ss_pred eEEeeCCCCc--EEEcccCCCCCCC-cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCC----
Q 005493 226 LHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFH---- 296 (694)
Q Consensus 226 v~~yd~~t~~--W~~l~~~g~~P~~-R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~---- 296 (694)
++.+|..+.+ |+.-. +..... ....+-++.++. +|+-...........|+.||.++++ |+.-...+..
T Consensus 132 l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred EEEEECCCCCEEeeccc--ccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 8999998875 87532 122111 111233445555 5553221122234579999998764 7654332110
Q ss_pred ---------C---------CCCcc----eEEEEE--CCEEEEEcCC----CC------CCCcCeEEEEECCCCc--EEEe
Q 005493 297 ---------P---------SPRAG----CCGVLC--GTKWYIAGGG----SR------KKRHAETLIFDILKGE--WSVA 340 (694)
Q Consensus 297 ---------p---------~~R~~----~sav~~--~~~iyV~GG~----~~------~~~~~~v~~yd~~t~~--W~~l 340 (694)
| ..+.+ ...++. .+.||+--|. .. +.+.+.+..+|++|.+ |..-
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 0 00111 111222 3467765554 11 2235689999999874 7643
Q ss_pred ecCCCCCCCCCcCcEEEEEee--cCC-cEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 341 ITSPSSSVTSNKGFTLVLVQH--KEK-DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 341 ~~~~~~~p~~r~~~s~~~v~~--~~~-~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
. .+...-..-.....+++.. .++ ..+++.+..++ .++++|..+.+
T Consensus 289 ~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~ 336 (527)
T TIGR03075 289 T-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG----FFYVLDRTNGK 336 (527)
T ss_pred C-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc----eEEEEECCCCc
Confidence 2 2222222222233444443 222 24666666544 57888887765
No 81
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.78 E-value=12 Score=40.54 Aligned_cols=272 Identities=18% Similarity=0.213 Sum_probs=127.9
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEE--ECCCCcEEEcccccccCCCCCCCCCCCccc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVL--NFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~y--d~~t~~W~~~~~~~~~~p~~~~~~~p~r~~ 149 (694)
.+..++.+......+.|-+ -+...-++.||+..... .....+..| +..+.+.+.+... +... ..
T Consensus 23 ~~g~l~~~~~~~~~~~Ps~-l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~----------~~~g-~~ 88 (345)
T PF10282_consen 23 ETGTLTLVQTVAEGENPSW-LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSV----------PSGG-SS 88 (345)
T ss_dssp TTTEEEEEEEEEESSSECC-EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEE----------EESS-SC
T ss_pred CCCCceEeeeecCCCCCce-EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeee----------ccCC-CC
Confidence 7788887753111121211 11111356788886543 122344444 5554677776652 1111 12
Q ss_pred eEEEEE---CCEEEEEccccCCCCCccEEEEEECCCC-cEEEee------ecCCC---CCcceeeEEEEEC--CeEEEEc
Q 005493 150 HSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVE------AKGDI---PVARSGHTVVRAS--SVLILFG 214 (694)
Q Consensus 150 ~s~v~~---~~~Iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~------~~g~~---p~~R~~~~~~~~~--~~lyv~G 214 (694)
.+.+.+ +..||+. -+. ...+.+|++..+ .-.... ..+.- ...-..|.+.... +.+|+..
T Consensus 89 p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 222333 3456654 221 236778877663 322221 01111 2234455655553 4566652
Q ss_pred cccCCCccccceEEeeCCCCc--EEEcccCCCCCCC-cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcC--CCcEEE
Q 005493 215 GEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTR 289 (694)
Q Consensus 215 G~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~~-R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~--t~~W~~ 289 (694)
.-.+.+++|+..... ....... .+|.. --.|.+..-+++++||....+ +.|.+|+.. ++.|+.
T Consensus 163 ------lG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 163 ------LGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp ------TTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEE
T ss_pred ------cCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeE
Confidence 124678899887665 5442211 12221 112333222456789987654 456666665 777776
Q ss_pred eeccCCCCC---CCcceEEEEE---CCEEEEEcCCCCCCCcCeEEEEEC--CCCcEEEeecCCCCCCCCCcCcEEEEEee
Q 005493 290 IKIRGFHPS---PRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLVQH 361 (694)
Q Consensus 290 l~~~~~~p~---~R~~~sav~~---~~~iyV~GG~~~~~~~~~v~~yd~--~t~~W~~l~~~~~~~p~~r~~~s~~~v~~ 361 (694)
+......|. +....+.+.+ +..+|+.-.. .+.+.+|++ .+...+.+...+.. ...--...+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~----G~~Pr~~~~s- 300 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG----GKFPRHFAFS- 300 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES----SSSEEEEEE--
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC----CCCccEEEEe-
Confidence 654332332 2222333333 4567775543 345778877 44566655433321 1111122332
Q ss_pred cCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 362 KEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 362 ~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
+++.+||+.+.. .+.|.+|+++.+
T Consensus 301 ~~g~~l~Va~~~----s~~v~vf~~d~~ 324 (345)
T PF10282_consen 301 PDGRYLYVANQD----SNTVSVFDIDPD 324 (345)
T ss_dssp TTSSEEEEEETT----TTEEEEEEEETT
T ss_pred CCCCEEEEEecC----CCeEEEEEEeCC
Confidence 344566664433 236888877544
No 82
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.76 E-value=9.8 Score=42.11 Aligned_cols=255 Identities=11% Similarity=0.040 Sum_probs=126.9
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCC-----C
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGS-----D 171 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~-----~ 171 (694)
+++.++++=..+..-...+.++|+.++....-. ++...+.+++..+ ++.+++........ .
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------------ccccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344455443222333456899999998443322 1122222244433 34555544433222 2
Q ss_pred ccEEEEEECCCCcEE--EeeecCCCCCcc--eeeEEEEECCeEEEEccccCCCccccceEEeeCCCC-----cEEEcccC
Q 005493 172 RVSVWTFDTETECWS--VVEAKGDIPVAR--SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-----TWLPLHCT 242 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~--~~~~~g~~p~~R--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~l~~~ 242 (694)
...||++.+.+..-. .+- ..+... +......-+++.+++.-.... . .+++|.+|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSP- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEE-
T ss_pred CcEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeC-
Confidence 568999999887643 222 122222 222222334454444333222 1 478999999875 7888852
Q ss_pred CCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc---EEEeeccCCCCCC-CcceEEEEECCEEEEEcCC
Q 005493 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSP-RAGCCGVLCGTKWYIAGGG 318 (694)
Q Consensus 243 g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~---W~~l~~~~~~p~~-R~~~sav~~~~~iyV~GG~ 318 (694)
+..-..+.+...++. +||.-.. ......|..+++.... |..+-.. +.. ..--.+...++.+++.-=.
T Consensus 275 ---~~~~~~~~v~~~~~~-~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 275 ---REDGVEYYVDHHGDR-LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp ---SSSS-EEEEEEETTE-EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEE
T ss_pred ---CCCceEEEEEccCCE-EEEeeCC--CCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEE
Confidence 122222233344555 7776553 2234578999998765 7743321 222 2334444568888776543
Q ss_pred CCCCCcCeEEEEECC-CCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCCc
Q 005493 319 SRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (694)
Q Consensus 319 ~~~~~~~~v~~yd~~-t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~w 391 (694)
+. ...+.+||+. ...-..++. | .....+.......+....|.+.+...- ..++.||+.+++.
T Consensus 346 ~~---~~~l~v~~~~~~~~~~~~~~-----p-~~g~v~~~~~~~~~~~~~~~~ss~~~P--~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 346 NG---SSRLRVYDLDDGKESREIPL-----P-EAGSVSGVSGDFDSDELRFSYSSFTTP--PTVYRYDLATGEL 408 (414)
T ss_dssp TT---EEEEEEEETT-TEEEEEEES-----S-SSSEEEEEES-TT-SEEEEEEEETTEE--EEEEEEETTTTCE
T ss_pred CC---ccEEEEEECCCCcEEeeecC-----C-cceEEeccCCCCCCCEEEEEEeCCCCC--CEEEEEECCCCCE
Confidence 33 2468999998 433333331 1 111112211112333445556676433 3789999988873
No 83
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.57 E-value=12 Score=41.28 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=76.5
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
..++++|+.++....+... +.........-+ +.|++..... ...++|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~------------~~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~ 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF------------PGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGP 277 (417)
T ss_pred cEEEEEECCCCCEEEeecC------------CCCccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCC
Confidence 3577888877765554431 111111112223 4566553321 2247999999998877765311
Q ss_pred CCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCCC
Q 005493 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 271 (694)
Q Consensus 193 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~~ 271 (694)
... .. ....-+++.+++...... ...+|++|+.+..+..+...+ .+....+.. +++ .+++.....
T Consensus 278 ~~~---~~-~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~-~i~~~~~~~- 343 (417)
T TIGR02800 278 GID---TE-PSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGD-LIAFVHREG- 343 (417)
T ss_pred CCC---CC-EEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCC-EEEEEEccC-
Confidence 111 01 111124444434322211 247999999988888775322 122222333 345 444444322
Q ss_pred CCCCeEEEEEcCCCcEEEeec
Q 005493 272 KTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 272 ~~~~dv~~yd~~t~~W~~l~~ 292 (694)
....++.+|+.++.++.+..
T Consensus 344 -~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 344 -GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred -CceEEEEEeCCCCCeEEccC
Confidence 23479999999877776643
No 84
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.24 E-value=0.11 Score=51.57 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=51.7
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccc
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 647 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~ 647 (694)
.-....+++.+.+.++.|.+||-.+...++..++.++.. +..++....+...|++|+..++.+-+|-+..-.+
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~-------~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEK-------ERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp --------------------------------------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999988776 5555555566666666666666666666677777
Q ss_pred cccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 005493 648 VHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEF 684 (694)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (694)
+.++-+-|--.+.-|...+..+|+|....=+-+|...
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777888899999999999877666555443
No 85
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.92 E-value=19 Score=40.32 Aligned_cols=188 Identities=8% Similarity=-0.004 Sum_probs=92.4
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
...+|..|.....=+.+... ... ..+....-+++.+++...... ...+|++|+.+.....+. ..+.....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~---~~~-v~~p~wSpDG~~lay~s~~~g---~~~i~~~dl~~g~~~~l~---~~~g~~~~ 250 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDG---SSL-VLTPRFSPNRQEITYMSYANG---RPRVYLLDLETGQRELVG---NFPGMTFA 250 (435)
T ss_pred ceEEEEECCCCCCcEEEecC---CCC-eEeeEECCCCCEEEEEEecCC---CCEEEEEECCCCcEEEee---cCCCcccC
Confidence 55899999866544444321 111 111111124444444433222 267999999998887775 23322221
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEEC-CEEEEEcCCCCCCCcCeEEEE
Q 005493 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 252 hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~-~~iyV~GG~~~~~~~~~v~~y 330 (694)
.. ..-+++.|++....++ ..++|++|+.++....+... +. ........-+ ..|++.....+ ...+|++
T Consensus 251 ~~-~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~---~~-~~~~~~~spDG~~i~f~s~~~g---~~~Iy~~ 319 (435)
T PRK05137 251 PR-FSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDS---PA-IDTSPSYSPDGSQIVFESDRSG---SPQLYVM 319 (435)
T ss_pred cE-ECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCC---CC-ccCceeEcCCCCEEEEEECCCC---CCeEEEE
Confidence 11 1223443444332222 35799999999888777543 11 1111111113 44544332222 2479999
Q ss_pred ECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 331 d~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
|+.....+.+... ........+.+.+ ..|+......+ ...++++++....
T Consensus 320 d~~g~~~~~lt~~-------~~~~~~~~~SpdG-~~ia~~~~~~~--~~~i~~~d~~~~~ 369 (435)
T PRK05137 320 NADGSNPRRISFG-------GGRYSTPVWSPRG-DLIAFTKQGGG--QFSIGVMKPDGSG 369 (435)
T ss_pred ECCCCCeEEeecC-------CCcccCeEECCCC-CEEEEEEcCCC--ceEEEEEECCCCc
Confidence 9988777766421 1112223343333 35544432211 2478888875443
No 86
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.91 E-value=19 Score=40.28 Aligned_cols=186 Identities=8% Similarity=0.082 Sum_probs=100.1
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
.++|++|+.+++=+.+.. .+ .........-++ +|++.-...+ ..++|.+|+.+..++++.. .+. ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~---~~~--~d 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITN---YPG--ID 279 (419)
T ss_pred CEEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEccc---CCC--cc
Confidence 389999999987777652 11 111111122234 5554433322 3689999999999998862 222 11
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC---CcCeE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAET 327 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~---~~~~v 327 (694)
...... +++.|++.....+ ..++|++|+.++..+++...+ .........++.|.+........ ...++
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g-----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG-----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred CccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCC-----CcCceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 111222 3444555543322 358999999999988776432 12222222245554444322211 23589
Q ss_pred EEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 328 ~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+++|+.+..++.+... . ... ...+.++++ .|+..... .....++.+++..+.
T Consensus 352 ~v~d~~~g~~~~LT~~------~-~~~-~p~~SPDG~-~I~f~~~~--~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 352 YLISTNSDYIRRLTAN------G-VNQ-FPRFSSDGG-SIMFIKYL--GNQSALGIIRLNYNK 403 (419)
T ss_pred EEEECCCCCeEECCCC------C-CcC-CeEECCCCC-EEEEEEcc--CCcEEEEEEecCCCe
Confidence 9999999998877531 1 111 123443333 44444332 223467777776654
No 87
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.55 E-value=8.8 Score=37.91 Aligned_cols=152 Identities=15% Similarity=0.212 Sum_probs=77.4
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEEECCCCcE--EEeeec-CCCCCcceeeEEEEEC-CeEEEEccccCCCccccce
Q 005493 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~-g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v 226 (694)
+++...+.+|+|-|. .+|+++...... ..+... ..+|. ...++..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC--------CEE
Confidence 344456999999663 688887652211 112110 11232 2222322223 78999955 357
Q ss_pred EEeeCCCCcEE---EcccCCCCCC-CcceeEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-----eec-cCC
Q 005493 227 HMFDLKSLTWL---PLHCTGTGPS-PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKI-RGF 295 (694)
Q Consensus 227 ~~yd~~t~~W~---~l~~~g~~P~-~R~~hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-----l~~-~~~ 295 (694)
|+|+..+..+. .+...+-.+. .... ++.... +..+|+|.| +..|+||...++... +.. -+.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCC
Confidence 78876542221 1110011111 2222 333333 445999988 358899876554321 100 001
Q ss_pred CCCCCcceEEEEEC-CEEEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 296 HPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 296 ~p~~R~~~sav~~~-~~iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
+| ..-.++.... +++|++-| +..|+||..+.+
T Consensus 146 ~p--~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 146 VP--DKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred cC--CCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 12 1123344444 89999988 358999998765
No 88
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.54 E-value=21 Score=39.94 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=77.0
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..++.+|+.+++-+.+.. .+..-. .....-++ +|++.....+ ..++|.+|+.+...+++.. .+.. .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~-~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~---~~~~--~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNG-APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---GRSN--N 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcC-CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC---CCCC--c
Confidence 479999998887666542 221111 11111234 4554433222 2359999999988887752 1111 1
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLI 329 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~ 329 (694)
...... +++.|+......+ ..++|.+|+.++....+...+ ......... .+..|++.+...+ ...+++
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~ 359 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQHIAK 359 (429)
T ss_pred CceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---CceEEE
Confidence 122223 3443333322211 357999999988777764321 111111111 2344544443322 246899
Q ss_pred EECCCCcEEEee
Q 005493 330 FDILKGEWSVAI 341 (694)
Q Consensus 330 yd~~t~~W~~l~ 341 (694)
+|+.+..+..+.
T Consensus 360 ~dl~~g~~~~Lt 371 (429)
T PRK03629 360 QDLATGGVQVLT 371 (429)
T ss_pred EECCCCCeEEeC
Confidence 999999888765
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.46 E-value=0.88 Score=45.51 Aligned_cols=77 Identities=22% Similarity=0.187 Sum_probs=46.9
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHH
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVA 660 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 660 (694)
+-..||+||+.+.+.+.++..+.. ..+.+++.+++......+.|+++.+.+..+-++ +..++.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~--------------~~~~~~ 156 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV--------------AQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 335677777777777777776655 445566666666556555566655555432222 455666
Q ss_pred HHHHHHhhhhhhhh
Q 005493 661 FLKAVLDDTQKVNC 674 (694)
Q Consensus 661 ~~~~~~~~~~~~~~ 674 (694)
.|+|-+|+.|++..
T Consensus 157 ~l~~~~~~~~~~~~ 170 (206)
T PRK10884 157 AANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777666543
No 90
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.35 E-value=12 Score=36.84 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=77.1
Q ss_pred EEEEECCEEEEEcCCCCCCCcCcEEEEECCCCc--EEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCC
Q 005493 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSG 169 (694)
Q Consensus 93 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~ 169 (694)
+++...+++|+|-| +.+|+++..... -..+... .+. .|..-..+..... +++|+|-|.
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~-------w~~-~p~~IDAa~~~~~~~~~yfFkg~---- 71 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSF-------WPS-LPSPVDAAFERPDTGKIYFFKGD---- 71 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh-------CCC-CCCCccEEEEECCCCEEEEECCC----
Confidence 34445688999977 456777765211 1122211 000 1222222222223 899999653
Q ss_pred CCccEEEEEECCCCcEE---EeeecCCCCC--cceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCCcEEE-----
Q 005493 170 SDRVSVWTFDTETECWS---VVEAKGDIPV--ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP----- 238 (694)
Q Consensus 170 ~~~~~v~~yd~~t~~W~---~~~~~g~~p~--~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~----- 238 (694)
.+|+|+..+..+. .+.. -..|. .....+...- ++++|+|-| +..|+||..+++...
T Consensus 72 ----~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~ 138 (194)
T cd00094 72 ----KYWVYTGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKL 138 (194)
T ss_pred ----EEEEEcCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcc
Confidence 6888887642221 1111 01222 2223333232 579999976 457788875554321
Q ss_pred cccC-CCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc
Q 005493 239 LHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (694)
Q Consensus 239 l~~~-g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~ 286 (694)
+... ..+|.. . .++....+..+|+|-|. ..|+||..+.+
T Consensus 139 i~~~w~g~p~~-i-daa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 139 IETDFPGVPDK-V-DAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred hhhcCCCcCCC-c-ceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 1000 123322 2 23333442338998874 68999988765
No 91
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.29 E-value=13 Score=36.86 Aligned_cols=188 Identities=11% Similarity=0.114 Sum_probs=86.1
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCccccceEEeeCCCC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~ 234 (694)
++..+++|+.. ..+.+||..+......-. ... ..-.++.... +.+++.|+.+ ..+..||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~---~~~-~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTLT---GHT-SYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEEe---ccC-CcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 34466666642 378889888753322110 111 1122233332 4666666522 45888998755
Q ss_pred cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CCEEE
Q 005493 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (694)
Q Consensus 235 ~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~~iy 313 (694)
+....- . .....-.++....+..+++.|+.+ ..+.+||+.+..-...-.. ......++... ++..+
T Consensus 126 ~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 126 KCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTG----HTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEec----CccccceEEECCCcCEE
Confidence 433221 1 111122334444434244444423 3588999875432221111 11112222333 34456
Q ss_pred EEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 314 V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
++++.++ .+.+||+.+....... .. .........+. ++ ..+++.|+.+ ..+.+|++...
T Consensus 193 ~~~~~~~-----~i~i~d~~~~~~~~~~--~~----~~~~i~~~~~~-~~-~~~~~~~~~~----~~i~i~~~~~~ 251 (289)
T cd00200 193 LSSSSDG-----TIKLWDLSTGKCLGTL--RG----HENGVNSVAFS-PD-GYLLASGSED----GTIRVWDLRTG 251 (289)
T ss_pred EEecCCC-----cEEEEECCCCceecch--hh----cCCceEEEEEc-CC-CcEEEEEcCC----CcEEEEEcCCc
Confidence 6666533 4889998774433221 00 11122223332 22 4555555522 25778887653
No 92
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.25 E-value=0.87 Score=48.07 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHh-----hHHHHhh---hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALV-----NREAAEK---NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~e~---~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~ 640 (694)
.....+++.+..+++.|.++++.++. ....++. +....-.....++++++...++++.++++++.+..+-+.
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888899998888877 3222222 222222222333333333444444444444443322221
Q ss_pred h-------cccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005493 641 A-------NSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFL 685 (694)
Q Consensus 641 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (694)
. ..+.+........+.+++.-.+..+...++++...|..++.|..
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11223333334445567777888888888888888888877653
No 93
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=92.23 E-value=1 Score=43.20 Aligned_cols=106 Identities=22% Similarity=0.135 Sum_probs=66.2
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-------LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~-------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
...+.++++++..||+||++++..++..++.+... .+..++||++.....++++.+.+|+.-+..- .+...+
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~-~~~~~~ 97 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL-DDSGVL 97 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc-cccccc
Confidence 35677899999999999998888887777766654 6667777777777777877777775333221 111222
Q ss_pred ccccc-----------cCCccc-hhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 645 SNIVH-----------SDNVRL-EHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 645 ~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
+-.+. .++..+ ..|+.-|..-|. |-|+|.++-+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~---~hl~s~~~n~~ 143 (160)
T PF13094_consen 98 ELPELPQKSLLEASESRFAPTLCDEELLPLLKQLN---KHLESMQNNLQ 143 (160)
T ss_pred ccccccccccccccccccCcccchHHHHHHHHHHH---HHHHHHHccHH
Confidence 22111 134455 555555555554 66666655443
No 94
>PRK13684 Ycf48-like protein; Provisional
Probab=92.21 E-value=19 Score=38.80 Aligned_cols=241 Identities=16% Similarity=0.173 Sum_probs=118.9
Q ss_pred CCCCceEEeeccCCCCCCccceEEEEEC-CEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCCc
Q 005493 71 GNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPAC 147 (694)
Q Consensus 71 ~~t~~W~~l~~~~~~P~~R~~hs~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~r 147 (694)
.....|+... .|....-..+++.+ +..|++|-. . .+|-.. -.+|+..... .+....
T Consensus 32 ~~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~------G--~il~T~DgG~tW~~~~~~---------~~~~~~ 90 (334)
T PRK13684 32 LSSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN------R--TLLETNDGGETWEERSLD---------LPEENF 90 (334)
T ss_pred ccCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC------C--EEEEEcCCCCCceECccC---------Cccccc
Confidence 3667898885 34343444555554 457777731 1 233332 3589987642 111111
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCccccce
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v 226 (694)
...++...++..|+.|.. ..+++-+-.-.+|+.+......|... .....++ +.+|+.|.. ..+
T Consensus 91 ~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~~~--~~i~~~~~~~~~~~g~~-------G~i 154 (334)
T PRK13684 91 RLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPGSP--YLITALGPGTAEMATNV-------GAI 154 (334)
T ss_pred ceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCCCc--eEEEEECCCcceeeecc-------ceE
Confidence 222333345566766532 13555444456899886311123222 2233333 456665532 235
Q ss_pred EEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEE-EcCCCcEEEeeccCCCCCCCcceEE
Q 005493 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKIRGFHPSPRAGCCG 305 (694)
Q Consensus 227 ~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~y-d~~t~~W~~l~~~~~~p~~R~~~sa 305 (694)
++=+-.-.+|+.+.. +..-..+.+....+..+++.|... .++.- |....+|+.+.. +..+..+++
T Consensus 155 ~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~----~~~~~l~~i 220 (334)
T PRK13684 155 YRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR----NSSRRLQSM 220 (334)
T ss_pred EEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC----CCcccceee
Confidence 554445678998852 223344555666666444554332 24433 344567999854 344444555
Q ss_pred EEE-CCEEEEEcCCCCCCCcCeEEEEE-C-CCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 306 VLC-GTKWYIAGGGSRKKRHAETLIFD-I-LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 306 v~~-~~~iyV~GG~~~~~~~~~v~~yd-~-~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
+.. ++.+|++|... ..++. . .-.+|+.+.. |. .........+.+. ..+.+|++|...
T Consensus 221 ~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~--~~~~~~l~~v~~~--~~~~~~~~G~~G 280 (334)
T PRK13684 221 GFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PE--ITNGYGYLDLAYR--TPGEIWAGGGNG 280 (334)
T ss_pred eEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-Cc--cccccceeeEEEc--CCCCEEEEcCCC
Confidence 443 67888887532 23342 2 2358997542 10 1111222222332 234678877653
No 95
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.20 E-value=22 Score=39.49 Aligned_cols=141 Identities=11% Similarity=0.095 Sum_probs=75.7
Q ss_pred cceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcc
Q 005493 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 302 (694)
Q Consensus 224 ~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~ 302 (694)
..+|++|+.++.-+.+. ..+.. ....... +++.|++....++ ..++|++|+.++.++.+... +. . .
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g~--~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~~-~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEGL--NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNH---PA-I-D 289 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCCC--cCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccC---CC-C-c
Confidence 57999999998887775 22211 1122222 3443443322111 25799999999998877542 11 1 1
Q ss_pred eEEEE--ECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCc
Q 005493 303 CCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQ 380 (694)
Q Consensus 303 ~sav~--~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~ 380 (694)
..... .+..||+.....+ ...+|.+|+.+..+..+... .. ......+.. +...|+......+ ...
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~------~~-~~~~~~~Sp-dg~~i~~~~~~~~--~~~ 356 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFV------GN-YNARPRLSA-DGKTLVMVHRQDG--NFH 356 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecC------CC-CccceEECC-CCCEEEEEEccCC--ceE
Confidence 11111 2445665543222 24799999998888776421 11 112223333 3345655543322 336
Q ss_pred EEEEECccCC
Q 005493 381 VEVLSIEKNE 390 (694)
Q Consensus 381 v~~~di~~~~ 390 (694)
++++|+.+.+
T Consensus 357 l~~~dl~tg~ 366 (430)
T PRK00178 357 VAAQDLQRGS 366 (430)
T ss_pred EEEEECCCCC
Confidence 8889987765
No 96
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.16 E-value=21 Score=39.83 Aligned_cols=186 Identities=9% Similarity=0.015 Sum_probs=91.4
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
...+|+.|.....=+.+... .... ...+. -+++.+++...... ...+|++|+.+++...+. ..+.. .
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~---~~~v--~~p~wSpDg~~la~~s~~~~---~~~l~~~dl~~g~~~~l~---~~~g~-~ 250 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRS---AEPI--LSPAWSPDGKKLAYVSFERG---RSAIYVQDLATGQRELVA---SFRGI-N 250 (433)
T ss_pred eEEEEEECCCCCCceEeecC---CCcc--ccccCCCCCCEEEEEecCCC---CcEEEEEECCCCCEEEec---cCCCC-c
Confidence 34688888765433333211 1110 11111 23444444433221 356999999988877765 22221 1
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CC-EEEEEcCCCCCCCcCeEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~-~iyV~GG~~~~~~~~~v~ 328 (694)
......-+++.|++....++ ..++|++|+.++..+.+... +. . ....... ++ .|++.....+ ...+|
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~-~-~~~~~~spDG~~l~f~sd~~g---~~~iy 319 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG-I-DTEPTWAPDGKSIYFTSDRGG---RPQIY 319 (433)
T ss_pred cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC-C-ccceEECCCCCEEEEEECCCC---CceEE
Confidence 11112223443444322222 25799999999887776542 11 1 1111222 34 4544433222 24799
Q ss_pred EEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 329 ~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
.+|+.+..+..+... .... ....+.. ++..|+...+.++ ...++++|+.+.+
T Consensus 320 ~~dl~~g~~~~lt~~------g~~~-~~~~~Sp-DG~~Ia~~~~~~~--~~~I~v~d~~~g~ 371 (433)
T PRK04922 320 RVAASGGSAERLTFQ------GNYN-ARASVSP-DGKKIAMVHGSGG--QYRIAVMDLSTGS 371 (433)
T ss_pred EEECCCCCeEEeecC------CCCc-cCEEECC-CCCEEEEEECCCC--ceeEEEEECCCCC
Confidence 999988888776421 1111 1233433 3345655444222 2378888886655
No 97
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.04 E-value=23 Score=39.27 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=106.0
Q ss_pred CCCceEEeeccCCCCCCc--cceEEEEECCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCCc
Q 005493 72 NSENWMVLSIAGDKPIPR--FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPAC 147 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R--~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~r 147 (694)
--.+|+...........+ ...++...++..|++|-.. .+|... ..+|+.++.. ...|..
T Consensus 118 GG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G--------~il~T~DgG~tW~~~~~~---------~~~p~~ 180 (398)
T PLN00033 118 GGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA--------ILLHTSDGGETWERIPLS---------PKLPGE 180 (398)
T ss_pred CCCCceECccCcccccccccceeeeEEECCEEEEEcCce--------EEEEEcCCCCCceECccc---------cCCCCC
Confidence 457898864211111111 2345555677788886321 333333 3699988652 111111
Q ss_pred cceEEEEE-CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC-CCCCcc--------------eeeEEEE-ECCeE
Q 005493 148 RGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG-DIPVAR--------------SGHTVVR-ASSVL 210 (694)
Q Consensus 148 ~~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g-~~p~~R--------------~~~~~~~-~~~~l 210 (694)
.+..... ++.++++|... .+++-+-.-.+|+.+.... +.|..+ ....+.. -++.+
T Consensus 181 -~~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~ 252 (398)
T PLN00033 181 -PVLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDY 252 (398)
T ss_pred -ceEEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCE
Confidence 2333334 45677877432 4777666667898762100 001110 1111121 23455
Q ss_pred EEEccccCCCccccceEEe-eCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcE--
Q 005493 211 ILFGGEDGKRRKLNDLHMF-DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-- 287 (694)
Q Consensus 211 yv~GG~~~~~~~~~~v~~y-d~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W-- 287 (694)
+++|-. ..+++- |.-...|+.+. .|.++...++....+..+++.|... .++.-+.....|
T Consensus 253 ~~vg~~-------G~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~ 315 (398)
T PLN00033 253 VAVSSR-------GNFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEED 315 (398)
T ss_pred EEEECC-------ccEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccc
Confidence 555422 224432 22223489884 4555555555555554477776542 244444444444
Q ss_pred ---EEeeccCCCCCCCcceE-EEEE-CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 288 ---TRIKIRGFHPSPRAGCC-GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 288 ---~~l~~~~~~p~~R~~~s-av~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
..+.. +..+.... +... ++.+|+.|... -++.-...-.+|+...
T Consensus 316 ~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 316 FDFEEADI----KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred cceeeccc----CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 44322 22333333 3333 56788888643 2444455667899864
No 98
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=92.02 E-value=0.21 Score=42.20 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=51.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 605 SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 605 ~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
+|.++.+.+|+|++.-.++.|.+..||-..++--| +-..||.|+.-||.+|+..+|||+..|.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e-----------~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPE-----------ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChH-----------HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45678888999999999999998888888775333 3456789999999999999999998876
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.84 E-value=17 Score=37.26 Aligned_cols=234 Identities=18% Similarity=0.183 Sum_probs=106.9
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEccccCCCCCccEEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
+..+|+.++.. +.+.+||+.+......-+. . ... . ...+.- ++.+|+.++.. ..+.
T Consensus 42 g~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~---------~-~~~-~-~~~~~~~g~~l~~~~~~~------~~l~ 98 (300)
T TIGR03866 42 GKLLYVCASDS-----DTIQVIDLATGEVIGTLPS---------G-PDP-E-LFALHPNGKILYIANEDD------NLVT 98 (300)
T ss_pred CCEEEEEECCC-----CeEEEEECCCCcEEEeccC---------C-CCc-c-EEEECCCCCEEEEEcCCC------CeEE
Confidence 34577776532 4688999988765442210 0 111 1 111222 34566665421 3799
Q ss_pred EEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEE
Q 005493 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (694)
Q Consensus 177 ~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~ 255 (694)
.||+.+.+-... ++......+++. -++.+++++..+. +.++.||..+..-......+..| .+...
T Consensus 99 ~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~ 164 (300)
T TIGR03866 99 VIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP----RFAEF 164 (300)
T ss_pred EEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc----cEEEE
Confidence 999987643211 111111123333 3566777664332 23566787765433221111211 12222
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-eecc--CCCCCCCcceEEEEE--CCEEEEEcCCCCCCCcCeEEEE
Q 005493 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIR--GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-l~~~--~~~p~~R~~~sav~~--~~~iyV~GG~~~~~~~~~v~~y 330 (694)
.-++..++ +++... +.+.+||+.+..... +... +..+........+.. +..+|+..+.. +.+.+|
T Consensus 165 s~dg~~l~-~~~~~~----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~ 234 (300)
T TIGR03866 165 TADGKELW-VSSEIG----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVV 234 (300)
T ss_pred CCCCCEEE-EEcCCC----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEE
Confidence 22444344 443211 358999998765422 2211 001111111222222 34556654432 358899
Q ss_pred ECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 331 d~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
|+.+..-.... .. .. ....+.+.. +..+||+..+.+ +.+.+||+.+.+
T Consensus 235 d~~~~~~~~~~--~~----~~-~~~~~~~~~-~g~~l~~~~~~~----~~i~v~d~~~~~ 282 (300)
T TIGR03866 235 DAKTYEVLDYL--LV----GQ-RVWQLAFTP-DEKYLLTTNGVS----NDVSVIDVAALK 282 (300)
T ss_pred ECCCCcEEEEE--Ee----CC-CcceEEECC-CCCEEEEEcCCC----CeEEEEECCCCc
Confidence 98764432211 11 11 122233432 334565444432 268899987755
No 100
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.72 E-value=17 Score=37.50 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=85.1
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEE-EeeecCCCCCccee------------eEEEEECCeEEEEc
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSG------------HTVVRASSVLILFG 214 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~------------~~~~~~~~~lyv~G 214 (694)
.|.+.+++++.+|.--. ..+.+.+||+.+..-. ... +|.+.+. .-.++..+-|+|+-
T Consensus 70 ~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred ccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 46677889999988633 4569999999998766 332 3332222 12233445677775
Q ss_pred cccCCCccccceEEeeCCCC----cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEe
Q 005493 215 GEDGKRRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (694)
Q Consensus 215 G~~~~~~~~~~v~~yd~~t~----~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l 290 (694)
....+.. .-.+-..|+.+- +|.. ..+.+..+.+..++ +- ||++...+... ..-.++||+.+++=..+
T Consensus 140 at~~~~g-~ivvskld~~tL~v~~tw~T-----~~~k~~~~naFmvC-Gv-LY~~~s~~~~~-~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 140 ATEDNNG-NIVVSKLDPETLSVEQTWNT-----SYPKRSAGNAFMVC-GV-LYATDSYDTRD-TEIFYAFDTYTGKEEDV 210 (250)
T ss_pred ecCCCCC-cEEEEeeCcccCceEEEEEe-----ccCchhhcceeeEe-eE-EEEEEECCCCC-cEEEEEEECCCCceece
Confidence 5543311 122445566543 4653 34555555544443 34 77776654332 33468999998876655
Q ss_pred eccCCCCCCCcceEEEEE---CCEEEEEcC
Q 005493 291 KIRGFHPSPRAGCCGVLC---GTKWYIAGG 317 (694)
Q Consensus 291 ~~~~~~p~~R~~~sav~~---~~~iyV~GG 317 (694)
... .+.+-..++++.. +.+||+.--
T Consensus 211 ~i~--f~~~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 211 SIP--FPNPYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred eee--eccccCceEeeeECCCCCeEEEEEC
Confidence 432 2333334555554 578888764
No 101
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.66 E-value=1.4 Score=49.85 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHH---HHHHHHHHHHHHHHH----HHHhhhhHhHhhhccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEM---EKKLADSLKEMELLK----EKLAGLELAQEEANSL 644 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~---e~~~~~~~~~~~~l~----~k~~~~~~~~e~~~~~ 644 (694)
......+..++..|..|++.+.....+.|.++.++.+...+. ..++..+..+.|.++ ++|.... .+.++
T Consensus 198 ~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~---~~~~~- 273 (546)
T PF07888_consen 198 TESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETV---VQLKQ- 273 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-
Confidence 334445566666666666666666666666666663333222 223333333333222 2222110 00000
Q ss_pred ccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhc
Q 005493 645 SNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDELAG 691 (694)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (694)
-...+.+++-|+..||..|..+|..|.+++.. .+++.+||+-
T Consensus 274 ---~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~--~~~L~~EL~~ 315 (546)
T PF07888_consen 274 ---EETQAQQLQQENEALKEQLRSAQEQLQASQQE--AELLRKELSD 315 (546)
T ss_pred ---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 01134567777888888888888888777643 2445555543
No 102
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.63 E-value=26 Score=39.10 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=102.7
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
.++|++|+.++.=+.+... +.........-+ .+|++.-... ...++|.+|+.++.++.+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~-- 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITN-- 274 (419)
T ss_pred CEEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEccc--
Confidence 3789999988766666531 111111112223 4555543321 23589999999999988863
Q ss_pred CCCCcceeeEEEE--ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCC
Q 005493 193 DIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 270 (694)
Q Consensus 193 ~~p~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~ 270 (694)
.+. ....... .+.+||+.-...+ ...+|++|+.+...+++...|. +.. ...-+++.|++......
T Consensus 275 -~~~--~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 275 -YPG--IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETN 341 (419)
T ss_pred -CCC--ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCC
Confidence 221 1111122 2345666543322 3579999999999988764322 222 22234453444333221
Q ss_pred CC---CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECC-EEEEEcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 271 SK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 271 ~~---~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~-~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
.. ...+++++|+.++.++.+...+ ....-...-++ .|++.... + ....++.+++..+.=..++
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~--~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-G--NQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred cccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-C--CcEEEEEEecCCCeeEEee
Confidence 11 2358999999999998886531 11111111244 45554332 2 2246888888776555554
No 103
>PRK11637 AmiB activator; Provisional
Probab=91.38 E-value=1.1 Score=50.13 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005493 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (694)
Q Consensus 587 ~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~ 631 (694)
.++..+...++.++++++.+-+...+++++++.+.++++.|++++
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 104
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.14 E-value=29 Score=38.71 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=76.2
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..+|.+|+.+++=..+.. .+. ...+.+. -++ +|++....++ ..++|.+|+.+...+++.. .. ...
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g--~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~ 286 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKG--SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ---SS-GID 286 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCC--CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC---CC-CCC
Confidence 479999999887655541 221 1111222 234 4544433332 2679999998887777642 11 111
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE--ECCEEEEEcCCCCCCCcCeEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~--~~~~iyV~GG~~~~~~~~~v~ 328 (694)
......-+++.|++.....+ ..++|.++..++..+.+...+ ........ .+..|+......+. ..++
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g~---~~I~ 355 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGGA---FKLY 355 (427)
T ss_pred cCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCCc---EEEE
Confidence 11122224443444332221 257999998888887775321 11112222 24455544432221 3689
Q ss_pred EEECCCCcEEEee
Q 005493 329 IFDILKGEWSVAI 341 (694)
Q Consensus 329 ~yd~~t~~W~~l~ 341 (694)
++|+.+.....+.
T Consensus 356 v~d~~~g~~~~lt 368 (427)
T PRK02889 356 VQDLATGQVTALT 368 (427)
T ss_pred EEECCCCCeEEcc
Confidence 9999988877654
No 105
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.82 E-value=1.6 Score=35.65 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=52.9
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
|=..+++|..+|+-|++..+--+-.+..+.++|+.+..+|..+..+..+||.++..+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999998887654
No 106
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.80 E-value=1.1 Score=57.95 Aligned_cols=20 Identities=20% Similarity=-0.021 Sum_probs=12.6
Q ss_pred ccCCCCccccccccccccCC
Q 005493 529 DYENSNPLVQGIGNFHVDND 548 (694)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~ 548 (694)
.++|---+++||++..+-.|
T Consensus 690 VLEgIRicR~GfPnr~~~~e 709 (1930)
T KOG0161|consen 690 VLEGIRICRQGFPNRMPFQE 709 (1930)
T ss_pred cHHHHHHHHhhCccccchHH
Confidence 34556667788877765444
No 107
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.76 E-value=33 Score=38.64 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=78.4
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccc-eEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG-HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~-~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
..+|++|+.++.-+.+... +.... ......++.|++..... ...++|.+|+.+++.+.+....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~ 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHR 305 (448)
T ss_pred cEEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCC
Confidence 4678888887766555431 11111 11111244565553322 2358999999999988775311
Q ss_pred CCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC
Q 005493 193 DIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (694)
Q Consensus 193 ~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~ 271 (694)
.........-++ .|++.....+ ...+|++|+.+.+++.+...+.. .......-+++.|++.+...
T Consensus 306 ----~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~-- 371 (448)
T PRK04792 306 ----AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTN-- 371 (448)
T ss_pred ----CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecC--
Confidence 111111112244 4444332222 25799999999999887532211 11112222445454443222
Q ss_pred CCCCeEEEEEcCCCcEEEeec
Q 005493 272 KTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 272 ~~~~dv~~yd~~t~~W~~l~~ 292 (694)
....++++|+.++..+.+..
T Consensus 372 -g~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 372 -GKFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -CceEEEEEECCCCCeEEccC
Confidence 12469999999998877654
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.68 E-value=0.68 Score=49.50 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=68.8
Q ss_pred hHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHH
Q 005493 586 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (694)
Q Consensus 586 ~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
+..++.....+++.|+....++++-+++|+..+.+.++++.|+++.+.++..++++-..-|.-+-+-.+++.+.+=|++-
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666777777777777788888888888888888888888777777777777777777777788888888
Q ss_pred Hhhhhhhhhhhhh
Q 005493 666 LDDTQKVNCSYYT 678 (694)
Q Consensus 666 ~~~~~~~~~~~~~ 678 (694)
++-++.+|+..|.
T Consensus 122 ~~~~~~~L~~L~k 134 (314)
T PF04111_consen 122 YEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877665
No 109
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=90.49 E-value=2 Score=46.36 Aligned_cols=119 Identities=23% Similarity=0.166 Sum_probs=83.5
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH---------------HHHHHHHHHHHHhhhh
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD---------------SLKEMELLKEKLAGLE 635 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~---------------~~~~~~~l~~k~~~~~ 635 (694)
.=.|+.+++..-..+||-|.+....+|-|...-..|--+|+.+|+|+-. ..+|.|.|+..|..+|
T Consensus 243 hv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAE 322 (575)
T KOG4403|consen 243 HVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAE 322 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3356666777777888999999988888887777777788899998862 2357788888887777
Q ss_pred HhHhhhcccccccccC----CccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhcc
Q 005493 636 LAQEEANSLSNIVHSD----NVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDELAGL 692 (694)
Q Consensus 636 ~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (694)
++- |+|+=...+-+= -+.-|-||+|+.-.=.+..|||.+.++ |-|++.|----+
T Consensus 323 kel-e~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake--~~eklkKKrssv 380 (575)
T KOG4403|consen 323 KEL-EANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKE--MAEKLKKKRSSV 380 (575)
T ss_pred HHH-HhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHhhcch
Confidence 653 455422222211 123367899999999999999999887 456666643333
No 110
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.96 E-value=1.5 Score=44.91 Aligned_cols=34 Identities=35% Similarity=0.289 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNF 603 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~ 603 (694)
..+.+....-++-..+++.|+.|....+.+|..+
T Consensus 110 e~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 110 EAERKYEEVERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 3334444444444444444444444444444333
No 111
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.82 E-value=25 Score=35.75 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=93.3
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCC-CCCccceEEEEECCEEEEEccccCCCCCc--cE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK-IPACRGHSLISWGKKVLLVGGKTDSGSDR--VS 174 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~-~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~--~~ 174 (694)
++.+|+... ..+.++|+.+..++.+..... .. ...+..-.++.-++.||+.--........ ..
T Consensus 51 ~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~-------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADS-------GGIAVVDPDTGKVTVLADLPD-------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp TSEEEEEET-------TCEEEEETTTTEEEEEEEEET-------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred CCEEEEEEc-------CceEEEecCCCcEEEEeeccC-------CCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 677888754 335677999999988876310 01 11222233334467877753222111122 57
Q ss_pred EEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CC-eEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCCCCc-
Q 005493 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPR- 249 (694)
Q Consensus 175 v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~~R- 249 (694)
+|++++. .+...+.. .+. ....++.. ++ .||+.- .....+++|++.... +........++...
T Consensus 117 v~~~~~~-~~~~~~~~--~~~---~pNGi~~s~dg~~lyv~d------s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 184 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVAD--GLG---FPNGIAFSPDGKTLYVAD------SFNGRIWRFDLDADGGELSNRRVFIDFPGGPG 184 (246)
T ss_dssp EEEEETT-SEEEEEEE--EES---SEEEEEEETTSSEEEEEE------TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC
T ss_pred eEEECCC-CeEEEEec--Ccc---cccceEECCcchheeecc------cccceeEEEeccccccceeeeeeEEEcCCCCc
Confidence 9999999 77666543 121 22244443 33 577642 234669999986433 33222111222222
Q ss_pred ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE----CCEEEEE
Q 005493 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWYIA 315 (694)
Q Consensus 250 ~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~----~~~iyV~ 315 (694)
+--.+++-.+..||+..-. .+.|++||++...-..+.. |.+ ..+.+.+ .+.|||.
T Consensus 185 ~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~~----p~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIEL----PVP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE-----SSS--SEEEEEEESTTSSEEEEE
T ss_pred CCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEcC----CCC--CEEEEEEECCCCCEEEEE
Confidence 2234555444448876211 1369999999666666653 323 3344444 2567775
No 112
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.76 E-value=2.6 Score=46.97 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHH-HHHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ-EMEKKLA 618 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~-~~e~~~~ 618 (694)
.-..+++.-+-.+-++|..||++|..+++-|||+|.-+|+.-| |-|.|.+
T Consensus 197 EglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~a 247 (772)
T KOG0999|consen 197 EGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNA 247 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5667888888899999999999999999999999999987644 4444444
No 113
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.61 E-value=2.3 Score=42.40 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHH----------HHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ----------EMEKKLADSLKEMELLKEKLAGLELAQ 638 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~----------~~e~~~~~~~~~~~~l~~k~~~~~~~~ 638 (694)
...++.++.+.++|..|..=|..|....+..++++...-+.|+ .+++++....-+.|.|+.++..++.+.
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999998888888887776533333 446666667778899999999998887
Q ss_pred hhhcc-cccccc-------cCCccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 639 EEANS-LSNIVH-------SDNVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 639 e~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
++.-. .-..|+ --|+-||.-++-|-+.|+..+.+|++.-.
T Consensus 124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66553 222333 34788999999999999999999986543
No 114
>PRK11637 AmiB activator; Provisional
Probab=89.20 E-value=4.5 Score=45.33 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc---ccc
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS---LSN 646 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~---~~~ 646 (694)
..++++..+.++-..|+.||..+...+.+++++++.+-+...+++++++...++++.+++.++..-++.-+..+ |.-
T Consensus 65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~v 144 (428)
T PRK11637 65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQL 144 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 33455666666666777777777777777777777777777777777777777777777777776666655333 334
Q ss_pred ccccCCc
Q 005493 647 IVHSDNV 653 (694)
Q Consensus 647 ~~~~~~~ 653 (694)
+..+++.
T Consensus 145 Ll~a~~~ 151 (428)
T PRK11637 145 ILSGEES 151 (428)
T ss_pred HhcCCCh
Confidence 5666654
No 115
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=89.16 E-value=29 Score=35.71 Aligned_cols=232 Identities=17% Similarity=0.191 Sum_probs=109.1
Q ss_pred CCCceEEeeccCCCC--CCccceEEEEE--CCEEEEEc--CCCCCCCc--CcEEEEECC-CCcEEEcccccccCCCCCCC
Q 005493 72 NSENWMVLSIAGDKP--IPRFNHAAAVI--GNKMIVVG--GESGNGLL--DDVQVLNFD-RFSWTAASSKLYLSPSSLPL 142 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P--~~R~~hs~~~~--~~~lyv~G--G~~~~~~~--~~v~~yd~~-t~~W~~~~~~~~~~p~~~~~ 142 (694)
...+|.....-...+ ..+.+..+.+. +++|++|- +....... .-.+..... ..+|......... +. .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~-~~---~ 103 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPG-WF---G 103 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHH-CC---C
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccc-cc---c
Confidence 457799864321222 34445554444 78888875 22221111 112355655 3589887642110 00 0
Q ss_pred CCC-CccceEEEEECCEEEEEccccCCCCCccEEEEEECC-CCcEEEeeecCCCCCcceeeEEEE-E-CCeEEEEccccC
Q 005493 143 KIP-ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVR-A-SSVLILFGGEDG 218 (694)
Q Consensus 143 ~~p-~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~g~~p~~R~~~~~~~-~-~~~lyv~GG~~~ 218 (694)
... ...+..+..-++.+++. .+.........+..|... -.+|+...+.. +.......+.+ . ++.|+++--..
T Consensus 104 ~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 104 NFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp SCEECSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred ceeccceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-
Confidence 011 11222244447788877 222112223345555555 45699887411 22234443333 3 56888886443
Q ss_pred CCccccceEEeeCC-CCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCC
Q 005493 219 KRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP 297 (694)
Q Consensus 219 ~~~~~~~v~~yd~~-t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p 297 (694)
... .-.+.+..+ -.+|+..... .+|.+.....++.+.+..++++.........-.+++-.-...+|.........+
T Consensus 180 ~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 180 GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGP 256 (275)
T ss_dssp SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE
T ss_pred CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCC
Confidence 211 223333333 3469976422 456666666666655544666655221111112333233478998765542223
Q ss_pred CCCcceEEEE-E-CCEEEE
Q 005493 298 SPRAGCCGVL-C-GTKWYI 314 (694)
Q Consensus 298 ~~R~~~sav~-~-~~~iyV 314 (694)
...+++..++ . +++|||
T Consensus 257 ~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 257 NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp -CCEEEEEEEEEETTEEEE
T ss_pred CCcEECCeeEEeCCCcCCC
Confidence 2345554443 4 578886
No 116
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.14 E-value=2.6 Score=49.59 Aligned_cols=26 Identities=27% Similarity=0.057 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
+++-+-|+-..+|+||++.+.+....
T Consensus 437 ~~~h~~lL~K~~di~kQle~~~~s~~ 462 (980)
T KOG0980|consen 437 RQEHADLLRKYDDIQKQLESAEQSID 462 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455677778888888888776554
No 117
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=2 Score=46.10 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=61.9
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHH--HhhhhHHHHhhHHHHHHHHHHH----HHHHHHHHHHHhhhhHh
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREA--AEKNFSSVLKSRQEMEKKLADS----LKEMELLKEKLAGLELA 637 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~e~~~~~~~~~~~~~e~~~~~~----~~~~~~l~~k~~~~~~~ 637 (694)
.|+-+.++-+.+++-+.-.-+|..+.++..+++. -+-+|+--.+-.+|.++||..+ .++++.||.|++.+|.-
T Consensus 99 ~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~ 177 (542)
T KOG0993|consen 99 CQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQR 177 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Confidence 4555778888889999999999999999999988 6677888888999999999864 57889999999988843
No 118
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.04 E-value=8.4 Score=39.92 Aligned_cols=159 Identities=18% Similarity=0.093 Sum_probs=93.1
Q ss_pred eEEEE-ECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEE
Q 005493 150 HSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (694)
Q Consensus 150 ~s~v~-~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 228 (694)
-++.. .++.+|.--|..+ .+.+..||+.+++-.... ++|..-++-+++.++++||..-=. ....++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEE
Confidence 34555 5789998877642 468999999999876555 488888999999999999998432 356899
Q ss_pred eeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-eeccCCCCCCCcceEEEE
Q 005493 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVL 307 (694)
Q Consensus 229 yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-l~~~~~~p~~R~~~sav~ 307 (694)
||+.+- +.+. ..+.+..+.+++..+.. +++.-|. +.++.+|+++..=.. +... ..+...-.
T Consensus 115 yd~~tl--~~~~---~~~y~~EGWGLt~dg~~-Li~SDGS------~~L~~~dP~~f~~~~~i~V~------~~g~pv~~ 176 (264)
T PF05096_consen 115 YDPNTL--KKIG---TFPYPGEGWGLTSDGKR-LIMSDGS------SRLYFLDPETFKEVRTIQVT------DNGRPVSN 176 (264)
T ss_dssp EETTTT--EEEE---EEE-SSS--EEEECSSC-EEEE-SS------SEEEEE-TTT-SEEEEEE-E------ETTEE---
T ss_pred Eccccc--eEEE---EEecCCcceEEEcCCCE-EEEECCc------cceEEECCcccceEEEEEEE------ECCEECCC
Confidence 999764 3343 44455678888865555 8888774 469999998654322 2111 01111111
Q ss_pred ECCEEEEEcCCC-CC-CCcCeEEEEECCCCcEEEe
Q 005493 308 CGTKWYIAGGGS-RK-KRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 308 ~~~~iyV~GG~~-~~-~~~~~v~~yd~~t~~W~~l 340 (694)
+ +.+=.++|.- .+ -..+.+.+.||.++.-...
T Consensus 177 L-NELE~i~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 177 L-NELEYINGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp E-EEEEEETTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred c-EeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 1 2232223321 11 1245788999999875443
No 119
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.98 E-value=63 Score=39.27 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=70.2
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEE-EeeecCCCCCcceeeEEEE--ECCeEEEEccccCCCccccceEEeeCC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~ 232 (694)
++.+++.||.+ ..+..||+.+..-. .+.. ... ..++.. .++.+++.|+.+ +.+.+||+.
T Consensus 587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~----~~~--v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDD------GSVKLWSINQGVSIGTIKT----KAN--ICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEEEEEec----CCC--eEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 45777787764 26888888765422 2211 111 111222 246788887754 358889986
Q ss_pred CCc--EEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC----cEEEeeccCCCCCCCcceEEE
Q 005493 233 SLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----IWTRIKIRGFHPSPRAGCCGV 306 (694)
Q Consensus 233 t~~--W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~----~W~~l~~~~~~p~~R~~~sav 306 (694)
+.. ...+. + ...+ -..+...++. .++.|+.++ .+.+||+... .|..+..... ........+.
T Consensus 649 ~~~~~~~~~~--~-h~~~--V~~v~f~~~~-~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~ 716 (793)
T PLN00181 649 NPKLPLCTMI--G-HSKT--VSYVRFVDSS-TLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGL 716 (793)
T ss_pred CCCccceEec--C-CCCC--EEEEEEeCCC-EEEEEECCC-----EEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEE
Confidence 543 22221 1 1111 1223334555 566666543 4778887642 2332222100 0111111222
Q ss_pred EECCEEEEEcCCCCCCCcCeEEEEECCC
Q 005493 307 LCGTKWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 307 ~~~~~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
..++.+++.|+.++ .+.+|+...
T Consensus 717 s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 717 SVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred cCCCCEEEEEeCCC-----EEEEEECCC
Confidence 23566777777665 377777654
No 120
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.91 E-value=3 Score=39.25 Aligned_cols=93 Identities=25% Similarity=0.253 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHH-------hhHHHHhhhhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHh
Q 005493 570 FYESKMAALIRKNGILEGQLAAAL-------VNREAAEKNFSS---VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~e~~~~~---~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e 639 (694)
..|.+|..|-+++..||.+|+.+. ..+++.++..+. +-+-.|.||..|..+.+.+....+||..++..=+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445556666666666655555544 444444443332 3444455555555555555555555555443333
Q ss_pred hhcccccccccCCccchhhHHHHHHHHhhhhhhhhhh
Q 005493 640 EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSY 676 (694)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (694)
+ +|+-|+.|..-.++.++.+...
T Consensus 112 ~--------------~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 112 H--------------FERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred H--------------HHHHHHHHHhhHHHHHHHHHHH
Confidence 2 3566777766666665555443
No 121
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=88.78 E-value=13 Score=33.85 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEE-CCCCcEEEeec
Q 005493 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD-ILKGEWSVAIT 342 (694)
Q Consensus 273 ~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd-~~t~~W~~l~~ 342 (694)
..+-+..||+.+.+|+.+..+............+.++|++-++.-.... ...-++|+++ ..+..|.+...
T Consensus 18 ~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEE
Confidence 3567999999999999887631223455566777789998777654433 2345889884 66788987643
No 122
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.53 E-value=27 Score=34.47 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=86.2
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 234 (694)
++.++++|+.. ..+..||..+..-..... ...... ..+... ++..+++|+.+ ..+.+||+.+.
T Consensus 20 ~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~---~~~~~i-~~~~~~~~~~~l~~~~~~------~~i~i~~~~~~ 83 (289)
T cd00200 20 DGKLLATGSGD------GTIKVWDLETGELLRTLK---GHTGPV-RDVAASADGTYLASGSSD------KTIRLWDLETG 83 (289)
T ss_pred CCCEEEEeecC------cEEEEEEeeCCCcEEEEe---cCCcce-eEEEECCCCCEEEEEcCC------CeEEEEEcCcc
Confidence 34666666642 367778877665222111 111111 122222 34567776653 45888888765
Q ss_pred cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEEC-CEEE
Q 005493 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWY 313 (694)
Q Consensus 235 ~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~-~~iy 313 (694)
.....- . .....-.++....+..+++.|+.+ ..+.+||+.+......-. .....-.++.... +.++
T Consensus 84 ~~~~~~---~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 84 ECVRTL---T-GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred cceEEE---e-ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEE
Confidence 322211 0 111122333444443356665533 358999987544332211 1111122333333 4444
Q ss_pred EEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 314 V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+.|+.++ .+.+||+.+..-.... .. .........+.. + +..+++|+.+ ..+.+||+....
T Consensus 151 ~~~~~~~-----~i~i~d~~~~~~~~~~--~~----~~~~i~~~~~~~-~-~~~l~~~~~~----~~i~i~d~~~~~ 210 (289)
T cd00200 151 ASSSQDG-----TIKLWDLRTGKCVATL--TG----HTGEVNSVAFSP-D-GEKLLSSSSD----GTIKLWDLSTGK 210 (289)
T ss_pred EEEcCCC-----cEEEEEccccccceeE--ec----CccccceEEECC-C-cCEEEEecCC----CcEEEEECCCCc
Confidence 4444233 4889998754322211 10 111222233332 2 2244555542 368888887644
No 123
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.49 E-value=67 Score=39.00 Aligned_cols=141 Identities=9% Similarity=0.130 Sum_probs=70.1
Q ss_pred CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE--CCeEEEEccccCCCccccceEEeeCCCC
Q 005493 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 234 (694)
+..++.|+.+ ..+..||..+.+....-. .....-.+++.. ++.+++.||.++ .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~~----~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEMK----EHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEec----CCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4556666653 278888988765332110 111112233332 467888887653 3778888665
Q ss_pred cEE-EcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECC
Q 005493 235 TWL-PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGT 310 (694)
Q Consensus 235 ~W~-~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~ 310 (694)
.-. .+. .... ..++... .+..++++|+.++ .+.+||+.+.. ...+.. ....-.++...++
T Consensus 609 ~~~~~~~----~~~~--v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~-----h~~~V~~v~f~~~ 672 (793)
T PLN00181 609 VSIGTIK----TKAN--ICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIG-----HSKTVSYVRFVDS 672 (793)
T ss_pred cEEEEEe----cCCC--eEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEecC-----CCCCEEEEEEeCC
Confidence 422 221 0111 1122221 2233677777653 58999987543 222211 1111122223366
Q ss_pred EEEEEcCCCCCCCcCeEEEEECCC
Q 005493 311 KWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 311 ~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
..++.|+.++ .+.+||+..
T Consensus 673 ~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 673 STLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred CEEEEEECCC-----EEEEEeCCC
Confidence 6677777654 377888764
No 124
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.37 E-value=8.2 Score=42.64 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=63.2
Q ss_pred EECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCC
Q 005493 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (694)
Q Consensus 205 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t 284 (694)
..+|+|+.+|+..+ .+-+||..+..--..-..-..|.-+.. .+..++. ++++|+.+.- +-.+|+.+
T Consensus 77 R~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~~~--f~~~d~t-~l~s~sDd~v-----~k~~d~s~ 142 (487)
T KOG0310|consen 77 RSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHVTK--FSPQDNT-MLVSGSDDKV-----VKYWDLST 142 (487)
T ss_pred ecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeEEE--ecccCCe-EEEecCCCce-----EEEEEcCC
Confidence 34799999997554 488899655321111000122222211 1233444 8888876542 55666666
Q ss_pred CcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC-cEEE
Q 005493 285 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-EWSV 339 (694)
Q Consensus 285 ~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~-~W~~ 339 (694)
..- .....+..-.-|++. ....++.|++.||+++. +..||+.+. .|..
T Consensus 143 a~v-~~~l~~htDYVR~g~-~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRCGD-ISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVV 191 (487)
T ss_pred cEE-EEEecCCcceeEeec-cccCCCeEEEecCCCce-----EEEEEeccCCceeE
Confidence 653 333332222223322 22347899999999986 788888776 5543
No 125
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=2.6 Score=37.00 Aligned_cols=84 Identities=31% Similarity=0.438 Sum_probs=60.3
Q ss_pred HhhHHHHhhhhHHHHhhHHHHHHHHHH---HHHHHHHHHH-----HHhhhhH---hHhhhcccccccccCCccch---hh
Q 005493 593 LVNREAAEKNFSSVLKSRQEMEKKLAD---SLKEMELLKE-----KLAGLEL---AQEEANSLSNIVHSDNVRLE---HD 658 (694)
Q Consensus 593 ~~~~~~~e~~~~~~~~~~~~~e~~~~~---~~~~~~~l~~-----k~~~~~~---~~e~~~~~~~~~~~~~~~~~---~~ 658 (694)
.....+.+|+++.-..+||++|..|+. +++|.++|.+ ||-|--+ .+|||+. | | -.||| .|
T Consensus 11 ~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~--n-V---~kRlefI~~E 84 (120)
T KOG3478|consen 11 ANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEART--N-V---GKRLEFISKE 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHh--h-H---HHHHHHHHHH
Confidence 344556688999999999999999984 6677777765 4433222 2344432 1 1 13666 78
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhh
Q 005493 659 VAFLKAVLDDTQKVNCSYYTQLMH 682 (694)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~ 682 (694)
++-+-+-+.|.|||+...|+.+|.
T Consensus 85 ikr~e~~i~d~q~e~~k~R~~v~k 108 (120)
T KOG3478|consen 85 IKRLENQIRDSQEEFEKQREAVIK 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999885
No 126
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.25 E-value=7.3 Score=38.22 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=63.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh---HhhhcccccccccCCccchh--hHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELA---QEEANSLSNIVHSDNVRLEH--DVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~---~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
-+-+.|+|.+.+.+-.++|.||..|+.++.. ++|+-.|++.+..---|-|. ++-=||-+|++..-+..|+-..|+
T Consensus 95 ~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~kle 174 (222)
T KOG3215|consen 95 VQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLE 174 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3456677888888888999999999998874 59999999999888888884 466788888888888888877777
Q ss_pred hhhhh
Q 005493 682 HEFLH 686 (694)
Q Consensus 682 ~~~~~ 686 (694)
.-+.|
T Consensus 175 lrRkq 179 (222)
T KOG3215|consen 175 LRRKQ 179 (222)
T ss_pred HHhhc
Confidence 65544
No 127
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.20 E-value=42 Score=36.26 Aligned_cols=250 Identities=16% Similarity=0.164 Sum_probs=116.7
Q ss_pred EEcCCCCCCCcCc--EEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEEC
Q 005493 103 VVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180 (694)
Q Consensus 103 v~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~ 180 (694)
++|++.. +.... ++.||..+.++..+..... ... + ...+.-.-++.||+..... .....-..|.++.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~-------~~~-P-s~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE-------GEN-P-SWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDP 71 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE-------SSS-E-CCEEE-TTSSEEEEEETTS-STTTEEEEEEEET
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC-------CCC-C-ceEEEEeCCCEEEEEEccc-cCCCCEEEEEECC
Confidence 3455543 22233 4556668899988765210 001 1 1111111356788875432 1222234555555
Q ss_pred CCCcEEEeeecCCCC-Ccce-eeEEEEECC-eEEEEccccCCCccccceEEeeCCCCc-EEEc------ccCCCC---CC
Q 005493 181 ETECWSVVEAKGDIP-VARS-GHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLT-WLPL------HCTGTG---PS 247 (694)
Q Consensus 181 ~t~~W~~~~~~g~~p-~~R~-~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~l------~~~g~~---P~ 247 (694)
.+++.+.+.. .+ .... +|.++.-++ .||+. -+. ...+.+|++..+. -... ...|+- ..
T Consensus 72 ~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 72 DTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp TTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred CcceeEEeee---eccCCCCcEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 5578877763 33 2222 232222233 45553 222 2457777776642 2111 101121 12
Q ss_pred CcceeEEEEECC-cEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCC-CcceEEEEE-CCEEEEEcCCCCCC
Q 005493 248 PRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSP-RAGCCGVLC-GTKWYIAGGGSRKK 322 (694)
Q Consensus 248 ~R~~hs~~~~~~-~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~-R~~~sav~~-~~~iyV~GG~~~~~ 322 (694)
.-.-|.+....+ +.+|+.. . -.+.|++|++.... ........ .|.+ --.|.+..- +..+||+.-.+.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~d-l----G~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~-- 214 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPD-L----GADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSN-- 214 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEE-T----TTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTT--
T ss_pred cccceeEEECCCCCEEEEEe-c----CCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCC--
Confidence 233466666644 5566642 1 13568899887665 65533221 1221 112332222 467899987554
Q ss_pred CcCeEEEEECC--CCcEEEeecCCCC--CCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECcc
Q 005493 323 RHAETLIFDIL--KGEWSVAITSPSS--SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (694)
Q Consensus 323 ~~~~v~~yd~~--t~~W~~l~~~~~~--~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~ 388 (694)
.+.+|+.. +..|+.+...+.. ........+.+.+ .++..+||+.--. .+.|.+|++..
T Consensus 215 ---~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~----~~sI~vf~~d~ 276 (345)
T PF10282_consen 215 ---TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRG----SNSISVFDLDP 276 (345)
T ss_dssp ---EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECT----TTEEEEEEECT
T ss_pred ---cEEEEeecccCCceeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEecc----CCEEEEEEEec
Confidence 46565555 6666655432221 1222223334444 3455577774322 45788888843
No 128
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.85 E-value=4.2 Score=46.19 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~ 633 (694)
-+++...|++.+..|++++.......+.++..|+..-++-++++.+........+.|+++...
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~ 210 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERES 210 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888877666666666666666555555555444444444444433333
No 129
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.48 E-value=48 Score=36.13 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=100.3
Q ss_pred EEECCEEEEEcCCCCCCCcCcEEEEECCCCc--EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCc
Q 005493 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (694)
Q Consensus 95 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~ 172 (694)
+..++++|+.. .. ..++.+|+.+.. |+...... ... ........+++||+-....
T Consensus 65 ~~~dg~v~~~~-~~-----G~i~A~d~~~g~~~W~~~~~~~----------~~~-~~~~~~~~~G~i~~g~~~g------ 121 (370)
T COG1520 65 ADGDGTVYVGT-RD-----GNIFALNPDTGLVKWSYPLLGA----------VAQ-LSGPILGSDGKIYVGSWDG------ 121 (370)
T ss_pred EeeCCeEEEec-CC-----CcEEEEeCCCCcEEecccCcCc----------cee-ccCceEEeCCeEEEecccc------
Confidence 66678888861 11 178999999975 97655410 000 1111122267766543321
Q ss_pred cEEEEEECCC--CcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCC--cEEEcccCCCCCCC
Q 005493 173 VSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSP 248 (694)
Q Consensus 173 ~~v~~yd~~t--~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~l~~~g~~P~~ 248 (694)
.+++||..+ ..|+.-... . .+.....++.++.+|+.- ..+.++.+|..+. .|+.-...+ .+.
T Consensus 122 -~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~- 187 (370)
T COG1520 122 -KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSL- 187 (370)
T ss_pred -eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-ccc-
Confidence 899999964 458765431 1 444444444555666542 1356888888755 487443211 222
Q ss_pred cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC--cEEEeeccCCCCCCCcce--EEEEECCEEEEEcCCCCCCCc
Q 005493 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGC--CGVLCGTKWYIAGGGSRKKRH 324 (694)
Q Consensus 249 R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~--~W~~l~~~~~~p~~R~~~--sav~~~~~iyV~GG~~~~~~~ 324 (694)
+.....+ +.+..+|+ |..+ . ...++.+|++++ .|..-... +..+..- ...+.+..||+-||.......
T Consensus 188 ~~~~~~~-~~~~~vy~-~~~~--~-~~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 259 (370)
T COG1520 188 SIYGSPA-IASGTVYV-GSDG--Y-DGILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYAGSYG 259 (370)
T ss_pred ccccCce-eecceEEE-ecCC--C-cceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEEEecC
Confidence 2222222 44442444 4332 1 226999999765 47743221 1111111 122224444444442111112
Q ss_pred CeEEEEECCCC--cEEEe
Q 005493 325 AETLIFDILKG--EWSVA 340 (694)
Q Consensus 325 ~~v~~yd~~t~--~W~~l 340 (694)
..++++|..+. .|+.-
T Consensus 260 g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 260 GKLLCLDADTGELIWSFP 277 (370)
T ss_pred CeEEEEEcCCCceEEEEe
Confidence 24778887764 47753
No 130
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.27 E-value=59 Score=37.02 Aligned_cols=147 Identities=15% Similarity=0.096 Sum_probs=69.7
Q ss_pred CccEEEEEECCCCc--EEEeeecCCCCCcceee--EEEE---ECC---eEEEEccccCCCccccceEEeeCCCCc--EEE
Q 005493 171 DRVSVWTFDTETEC--WSVVEAKGDIPVARSGH--TVVR---ASS---VLILFGGEDGKRRKLNDLHMFDLKSLT--WLP 238 (694)
Q Consensus 171 ~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~--~~~~---~~~---~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 238 (694)
..+.++.+|.++++ |+.-....+....+... .+.. +++ .++++|..+ ..++.+|..+.+ |+.
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~------G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN------GFFYVLDRTTGKLISAR 327 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC------ceEEEEECCCCcEeeEe
Confidence 34579999999865 87532111111001111 1111 222 244444432 348999998876 875
Q ss_pred cccCCCCCCCcceeEEEEECCcEEEEEcCCC------------CCCCCCeEEEEEcCCCc--EEEeeccCC-C---CCCC
Q 005493 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSS------------KSKTLNDLYSLDFETMI--WTRIKIRGF-H---PSPR 300 (694)
Q Consensus 239 l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~------------~~~~~~dv~~yd~~t~~--W~~l~~~~~-~---p~~R 300 (694)
-... . .++... ..+|+-.... .......++.+|..+++ |+.-..... . ..+.
T Consensus 328 ~~~~--~-------~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 328 PEVE--Q-------PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred Eeec--c-------ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 4210 0 111111 3245422110 01123468999988654 776432000 0 0112
Q ss_pred cceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCc--EEE
Q 005493 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE--WSV 339 (694)
Q Consensus 301 ~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~--W~~ 339 (694)
.....++.++.||+ |..++ .++.||.++.+ |+.
T Consensus 398 ~~~~~~~~g~~v~~-g~~dG-----~l~ald~~tG~~lW~~ 432 (488)
T cd00216 398 WGGSLATAGNLVFA-GAADG-----YFRAFDATTGKELWKF 432 (488)
T ss_pred cCcceEecCCeEEE-ECCCC-----eEEEEECCCCceeeEE
Confidence 22233444555444 44443 49999998864 774
No 131
>smart00284 OLF Olfactomedin-like domains.
Probab=87.21 E-value=40 Score=34.93 Aligned_cols=191 Identities=13% Similarity=0.037 Sum_probs=97.6
Q ss_pred CCEEEEEccccCCCCCccEEEEEE----CCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFD----TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd----~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 231 (694)
++++|++.+.. ...+.++.|. +....+...- .+|.+-.+.+.++++|.+|..-. ..+.+.+||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 46788886653 2234677774 2234443322 37877888888999999998643 2467999999
Q ss_pred CCCcEEEcccCCCCCCCcc---------ee---EEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCC
Q 005493 232 KSLTWLPLHCTGTGPSPRS---------NH---VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~---------~h---s~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~ 299 (694)
.+..-.... .+|.+.+ ++ =.++-.+...+|+......+ .--|-++|+.+-.-...-.. ..+.
T Consensus 102 ~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T-~~~k- 175 (255)
T smart00284 102 TTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNPATLTIENTWIT-TYNK- 175 (255)
T ss_pred CCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCcccceEEEEEEc-CCCc-
Confidence 998764332 2332211 11 12333344223333322111 11245677766443333222 1122
Q ss_pred CcceEEEEECCEEEEEcCCCCCCCcCe-EEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEE
Q 005493 300 RAGCCGVLCGTKWYIAGGGSRKKRHAE-TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (694)
Q Consensus 300 R~~~sav~~~~~iyV~GG~~~~~~~~~-v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~ 370 (694)
+....+.++-|.+|++-.... .... .+.||+.+.+=..+. . ..+.....++++-..+ ....||+.
T Consensus 176 ~sa~naFmvCGvLY~~~s~~~--~~~~I~yayDt~t~~~~~~~-i--~f~n~y~~~s~l~YNP-~d~~LY~w 241 (255)
T smart00284 176 RSASNAFMICGILYVTRSLGS--KGEKVFYAYDTNTGKEGHLD-I--PFENMYEYISMLDYNP-NDRKLYAW 241 (255)
T ss_pred ccccccEEEeeEEEEEccCCC--CCcEEEEEEECCCCccceee-e--eeccccccceeceeCC-CCCeEEEE
Confidence 333344555688998863211 1123 479999887633321 1 2223333444444433 33466654
No 132
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=87.19 E-value=2 Score=48.58 Aligned_cols=48 Identities=33% Similarity=0.353 Sum_probs=38.8
Q ss_pred hhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhh
Q 005493 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (694)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~ 641 (694)
..+-++|.-|.--+-+++++|.++=+.+.|+-.||.|++++|++|-|.
T Consensus 153 ~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~ 200 (861)
T KOG1899|consen 153 NKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNET 200 (861)
T ss_pred hhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhH
Confidence 344455666666678899999999999999999999999999888443
No 133
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.03 E-value=54 Score=36.34 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=120.3
Q ss_pred CCCceEEeeccCCCCCCccceEEEEE---CCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCC
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPA 146 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~ 146 (694)
....|+++.. +....+.-..+.++ .+.-|++|-.. .++... -.+|........ .....
T Consensus 73 ~G~~W~q~~~--p~~~~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~-------~~~~~ 135 (398)
T PLN00033 73 QSSEWEQVDL--PIDPGVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSA-------EDEDF 135 (398)
T ss_pred CCCccEEeec--CCCCCCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCcc-------ccccc
Confidence 5668999863 11122344555552 34688888522 234333 458998643100 01111
Q ss_pred -ccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCcccc
Q 005493 147 -CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLN 224 (694)
Q Consensus 147 -r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~ 224 (694)
....++...++..|++|-.. .++.-+-.-.+|+.++....+|... +....++ +.++++|.. .
T Consensus 136 ~~~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~~--~~i~~~~~~~~~ivg~~-------G 199 (398)
T PLN00033 136 NYRFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGEP--VLIKATGPKSAEMVTDE-------G 199 (398)
T ss_pred ccceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCCc--eEEEEECCCceEEEecc-------c
Confidence 12344455577888886431 3444444568899886432333332 2233343 567777732 2
Q ss_pred ceEEeeCCCCcEEEcccCC-C--------------CCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC-cEE
Q 005493 225 DLHMFDLKSLTWLPLHCTG-T--------------GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWT 288 (694)
Q Consensus 225 ~v~~yd~~t~~W~~l~~~g-~--------------~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~-~W~ 288 (694)
.+++-+-.-.+|+.+.... + .+..-..+++....+..++++|-.. .+++-+.... .|+
T Consensus 200 ~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~ 273 (398)
T PLN00033 200 AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQ 273 (398)
T ss_pred eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceE
Confidence 2555444456798762110 0 0111112233333444356665432 2454443344 489
Q ss_pred EeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEEEECCCCc-----EEEeecCCCCCCCCCcCcEEEEEeec
Q 005493 289 RIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGE-----WSVAITSPSSSVTSNKGFTLVLVQHK 362 (694)
Q Consensus 289 ~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~yd~~t~~-----W~~l~~~~~~~p~~r~~~s~~~v~~~ 362 (694)
.+.. |.++...++.. .++.++++|... .++.-+..... |..++. +..+.....+...
T Consensus 274 ~~~~----~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~-----~~~~~~l~~v~~~-- 336 (398)
T PLN00033 274 PHNR----ASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADI-----KSRGFGILDVGYR-- 336 (398)
T ss_pred EecC----CCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeeccc-----CCCCcceEEEEEc--
Confidence 8865 33444444433 377888877532 24444444443 444321 1122333333333
Q ss_pred CCcEEEEEcCCC
Q 005493 363 EKDFLVAFGGIK 374 (694)
Q Consensus 363 ~~~~i~v~GG~~ 374 (694)
+.+.++++|..+
T Consensus 337 ~d~~~~a~G~~G 348 (398)
T PLN00033 337 SKKEAWAAGGSG 348 (398)
T ss_pred CCCcEEEEECCC
Confidence 345788888764
No 134
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=87.02 E-value=7 Score=32.79 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=49.9
Q ss_pred HHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhh
Q 005493 589 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 668 (694)
Q Consensus 589 l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (694)
|++.-+.-+..-+..++.-..++++|.|++.-+.|++.++.||-.||.++...-. .-|.|++-||+-|+.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~----------~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ----------QYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 3444444455555555555589999999999999999999999999998743221 227777777776653
No 135
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.66 E-value=59 Score=36.35 Aligned_cols=189 Identities=8% Similarity=0.001 Sum_probs=94.0
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
..++++|+.++.-+.+... +.........-+ .+|++..... ...++|.+|+.+++...+...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~------------~~~~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~~~~lt~~- 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF------------PRHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDG- 285 (429)
T ss_pred cEEEEEECCCCCeEEccCC------------CCCcCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEccCC-
Confidence 4577778777665555431 111111112223 4555543221 123699999999888776521
Q ss_pred CCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC
Q 005493 193 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (694)
Q Consensus 193 ~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~ 271 (694)
+.. . ..... -+++.++|...... ...+|.+|+.+....++...+ .........-+++.|++.+....
T Consensus 286 --~~~-~-~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g- 353 (429)
T PRK03629 286 --RSN-N-TEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG- 353 (429)
T ss_pred --CCC-c-CceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC-
Confidence 111 1 11122 24554444332211 247999999888777664221 11111112224453444433222
Q ss_pred CCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEe
Q 005493 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 272 ~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l 340 (694)
...++++|+.++.++.+.... ........-+++.+++.+..+. ...+++.+++...=..+
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred --CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 246999999999988876421 1111112235666666654433 23466777755443444
No 136
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.66 E-value=5.7 Score=39.70 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=64.3
Q ss_pred chhhhhhHHHHHHHHhhc----hhhHHHHHHHhhHHHHhhhhHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 566 SIYQFYESKMAALIRKNG----ILEGQLAAALVNREAAEKNFSSV-------LKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~e~~~~~~-------~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
.|-.-||+.++++|.+.. ..+.++..+++.+++|-.+|.++ ++..+.+..-+...-+--|.||..++..
T Consensus 44 ~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey 123 (207)
T PF05010_consen 44 KIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEY 123 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355688888888887653 33444555666666666666554 3333322222222222222222222111
Q ss_pred h---------------HhH---hhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhh-hhhh
Q 005493 635 E---------------LAQ---EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLH-DELA 690 (694)
Q Consensus 635 ~---------------~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 690 (694)
+ -|. +.||..=.-|. -..+.|++-|.|.|.-.|..++|.-..|-..-.+ +||.
T Consensus 124 ~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~---~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 124 EERLKKEEQRYQALKAHAEEKLEKANEEIAQVR---SKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 11221111111 1245789999999999999999998887654443 3443
No 137
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.54 E-value=4 Score=46.34 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
+.+.+.++-..|+.+++.+....+.++|....+=+...+.+..|..+.-++..+|.+.+.+|
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 33444445555666666666655555555555544444444444444444444444444443
No 138
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.26 E-value=4.5 Score=41.84 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh--------hc
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE--------AN 642 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~--------~~ 642 (694)
.++++..+-.++..|.+++....+..+..+. ..+++++.++...++++.|+++++.++..+.+ ..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-------~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEV-------YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333333 33333444444444444444444444433332 24
Q ss_pred ccccccccCCccchh----hHHHHHHHHhhhhhhh
Q 005493 643 SLSNIVHSDNVRLEH----DVAFLKAVLDDTQKVN 673 (694)
Q Consensus 643 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 673 (694)
.|...|..|-.=+.. =+++|++.|++.+=-+
T Consensus 113 ~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~ 147 (251)
T PF11932_consen 113 ELEQFVELDLPFLLEERQERLARLRAMLDDADVSL 147 (251)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCH
Confidence 466777776644443 2788888888775433
No 139
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.24 E-value=4.7 Score=47.54 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=47.7
Q ss_pred Cchh-hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 005493 565 SSIY-QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (694)
Q Consensus 565 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~ 626 (694)
+|+. .-..+++.-+--+...|-.||+.|+++++-|||+|.-+|++-+.=-+.+...-||...
T Consensus 119 sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 119 SQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4553 6778899999999999999999999999999999999998866443333333444433
No 140
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=86.21 E-value=32 Score=35.42 Aligned_cols=130 Identities=16% Similarity=0.203 Sum_probs=65.4
Q ss_pred CCCceEEeeccCCCCC-------CccceEEEEECCEEEEEcCCCCCCCcCcE--EEE-----ECCCCcEEEcccccccCC
Q 005493 72 NSENWMVLSIAGDKPI-------PRFNHAAAVIGNKMIVVGGESGNGLLDDV--QVL-----NFDRFSWTAASSKLYLSP 137 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~-------~R~~hs~~~~~~~lyv~GG~~~~~~~~~v--~~y-----d~~t~~W~~~~~~~~~~p 137 (694)
....|+.-... ..|. .-.-|+.+.+++.=|.+|=.+++-....+ ..| ++....=+.++..
T Consensus 113 ~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se----- 186 (367)
T PF12217_consen 113 HDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE----- 186 (367)
T ss_dssp TTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-----
T ss_pred ccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-----
Confidence 67788765432 2222 34568888898888888744333322222 112 1111122333331
Q ss_pred CCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCccee--eEEEEECCeEEEEcc
Q 005493 138 SSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRASSVLILFGG 215 (694)
Q Consensus 138 ~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~--~~~~~~~~~lyv~GG 215 (694)
-.+...-.|+-.+++.+|+.--...+...-+.+.+-+.....|+.+. .|..... .--+.+++.||+||-
T Consensus 187 -----y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 187 -----YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp -----G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE
T ss_pred -----hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccccccCCCceeeCCEEEEEec
Confidence 11222345667789999998655555555668899988899999987 3432222 223567999999996
Q ss_pred c
Q 005493 216 E 216 (694)
Q Consensus 216 ~ 216 (694)
.
T Consensus 258 E 258 (367)
T PF12217_consen 258 E 258 (367)
T ss_dssp -
T ss_pred c
Confidence 5
No 141
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.09 E-value=2 Score=38.34 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=41.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhh
Q 005493 603 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (694)
Q Consensus 603 ~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (694)
+..++..-.++|.++....++++.||..|+.+.+ +|.+|.-|.+-|+..|++.
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~E--------------EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLE--------------ENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 3455666678888888888888888888888764 4888888888888888875
No 142
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.74 E-value=50 Score=36.46 Aligned_cols=206 Identities=18% Similarity=0.176 Sum_probs=107.2
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCc-----cccceEEe
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRR-----KLNDLHMF 229 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~-----~~~~v~~y 229 (694)
+++.++++=. ..+.....++++|+.+++...-. ++...... ++..+ +..+++...+.... ....++++
T Consensus 134 dg~~la~~~s-~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 134 DGKRLAYSLS-DGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TSSEEEEEEE-ETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCEEEEEec-CCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 5666666432 23445568999999999654322 22222222 44444 35666655544322 36789999
Q ss_pred eCCCCcEE--EcccCCCCCCCcc-eeEEE-EECCcEEEEEcCCCCCCCCCeEEEEEcCCC-----cEEEeeccCCCCCCC
Q 005493 230 DLKSLTWL--PLHCTGTGPSPRS-NHVAA-LYDDKNLLIFGGSSKSKTLNDLYSLDFETM-----IWTRIKIRGFHPSPR 300 (694)
Q Consensus 230 d~~t~~W~--~l~~~g~~P~~R~-~hs~~-~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~-----~W~~l~~~~~~p~~R 300 (694)
.+.+..-. .+- ..+.+.. ...+. .-+++.++|.-.... . .+++|.+|+... .|..+... ..-
T Consensus 208 ~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~ 278 (414)
T PF02897_consen 208 KLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG 278 (414)
T ss_dssp ETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEES----SSS
T ss_pred ECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCC----CCc
Confidence 98877644 221 1222222 22333 334454444333222 2 478999999875 88888652 223
Q ss_pred cceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCc---EEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC
Q 005493 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 377 (694)
Q Consensus 301 ~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~---W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~ 377 (694)
..+.+...++.+||..... .....+..+++.... |..+.. + .........+.. .+++|++.-=.+ .
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~-~-----~~~~~~l~~~~~-~~~~Lvl~~~~~--~ 347 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLI-P-----EDEDVSLEDVSL-FKDYLVLSYREN--G 347 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--------SSSEEEEEEEE-ETTEEEEEEEET--T
T ss_pred eEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEc-C-----CCCceeEEEEEE-ECCEEEEEEEEC--C
Confidence 3334444599999988733 334578899988765 663321 1 111122222221 134555543322 2
Q ss_pred CCcEEEEECc
Q 005493 378 SNQVEVLSIE 387 (694)
Q Consensus 378 ~~~v~~~di~ 387 (694)
...+.++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 4488888888
No 143
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.63 E-value=8.4 Score=35.19 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.4
Q ss_pred EECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEe-eCC
Q 005493 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF-DLK 232 (694)
Q Consensus 154 ~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y-d~~ 232 (694)
.++|-+|...-. .......+.+||+.+.+|+.++..............+.++|+|-++.-........=++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 457788877665 23345689999999999998874211224455566777889888876544321123467777 456
Q ss_pred CCcEEEcc
Q 005493 233 SLTWLPLH 240 (694)
Q Consensus 233 t~~W~~l~ 240 (694)
...|.+..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 77899775
No 144
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=85.62 E-value=0.85 Score=43.76 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHhhchhhHHH
Q 005493 569 QFYESKMAALIRKNGILEGQL 589 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l 589 (694)
+|+|+|+.+.|.+|+.||..|
T Consensus 3 eD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 689999999999999998888
No 145
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.55 E-value=9.5 Score=38.06 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=66.4
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
.+|-.+|..=....|.--..|..|+++..+.-+..+|.++.+..+...|-+-|+.+.++.+.|+.+|+.-+..+....++
T Consensus 12 ~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~ 91 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNL 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666667778999999999999999999999999999999999999999999999998887765554444
Q ss_pred cccc
Q 005493 645 SNIV 648 (694)
Q Consensus 645 ~~~~ 648 (694)
...+
T Consensus 92 k~rl 95 (201)
T PF13851_consen 92 KARL 95 (201)
T ss_pred HHHH
Confidence 4433
No 146
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=85.36 E-value=47 Score=33.97 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=89.3
Q ss_pred CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEE
Q 005493 124 FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTV 203 (694)
Q Consensus 124 ~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~ 203 (694)
..|+...|+.... .+.|-.....+.--.|.|+..||-. .+|..|+++++.+..- .-..-+-|++
T Consensus 99 ~lwe~~~P~~~~~-----~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~v 162 (325)
T KOG0649|consen 99 RLWEVKIPMQVDA-----VEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSV 162 (325)
T ss_pred hhhhhcCccccCc-----ccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeee
Confidence 4687777653211 2334333334444578899998753 7999999999987653 2334466666
Q ss_pred EEEC-CeEEEEccccCCCccccceEEeeCCCCcEEEc-ccC--CCCCCCccee--EEEEECCcEEEEEcCCCCCCCCCeE
Q 005493 204 VRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HCT--GTGPSPRSNH--VAALYDDKNLLIFGGSSKSKTLNDL 277 (694)
Q Consensus 204 ~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l-~~~--g~~P~~R~~h--s~~~~~~~~lyv~GG~~~~~~~~dv 277 (694)
+.-+ +-=++-||.++ .+-++|..+.+-.++ .+. ...-.|-.+- .+...+.. .+|.||-. .+
T Consensus 163 v~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp------~l 229 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP------KL 229 (325)
T ss_pred eecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC------ce
Confidence 6533 33445566554 356778877765543 211 1122222222 44455555 67777742 35
Q ss_pred EEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEc
Q 005493 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 316 (694)
Q Consensus 278 ~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~G 316 (694)
-.|++...+.+.+-+ .|-.-+-+..+++.+++.|
T Consensus 230 slwhLrsse~t~vfp-----ipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFP-----IPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred eEEeccCCCceEEEe-----cccceeEeeeecceEEEec
Confidence 677777777666533 3333344444566666666
No 147
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.27 E-value=68 Score=35.78 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=71.4
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..++.+|+.++.-+.+.. .+.. . ...+. -+++.++++..... ..++|.+|+.+.....+.. .+. ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~-~-~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~~--~~ 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH-N-GAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTS---GAG--NN 294 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc-c-CceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeecc---CCC--Cc
Confidence 479999998887666542 2211 1 12222 24554444432211 1359999998888777642 111 11
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~y 330 (694)
...+.. +++.|++.....+ ..++|.++..+..-+.+.. .. ........+..|++.++ ..++.+
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~-----~~-~~~~~SpDG~~ia~~~~-------~~i~~~ 358 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG-----RG-YSAQISADGKTLVMING-------DNVVKQ 358 (429)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC-----CC-CCccCCCCCCEEEEEcC-------CCEEEE
Confidence 122222 3443444332222 2478888877665444311 11 11111112345555544 258889
Q ss_pred ECCCCcEEEee
Q 005493 331 DILKGEWSVAI 341 (694)
Q Consensus 331 d~~t~~W~~l~ 341 (694)
|+.+..+..+.
T Consensus 359 Dl~~g~~~~lt 369 (429)
T PRK01742 359 DLTSGSTEVLS 369 (429)
T ss_pred ECCCCCeEEec
Confidence 99998887653
No 148
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.21 E-value=14 Score=38.39 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=75.5
Q ss_pred EEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEE
Q 005493 202 TVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 280 (694)
Q Consensus 202 ~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~y 280 (694)
+... .++.+|.--|..+. +.+.+||+.+++-.... ++|..-++=+++.++++ ||..==.+ +..++|
T Consensus 49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~-l~qLTWk~-----~~~f~y 115 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDK-LYQLTWKE-----GTGFVY 115 (264)
T ss_dssp EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTE-EEEEESSS-----SEEEEE
T ss_pred cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCE-EEEEEecC-----CeEEEE
Confidence 3444 56889888887653 67999999999876555 67887888899999998 77663322 358999
Q ss_pred EcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEE
Q 005493 281 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (694)
Q Consensus 281 d~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~ 338 (694)
|..+- ..+... +.+.-+.+.+..+..+|+--|. +.++.+||++..-.
T Consensus 116 d~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 116 DPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEV 162 (264)
T ss_dssp ETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEE
T ss_pred ccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccceE
Confidence 98764 344332 4456788888888889998884 36999999876543
No 149
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.20 E-value=2.2 Score=43.75 Aligned_cols=112 Identities=22% Similarity=0.222 Sum_probs=68.9
Q ss_pred hhhhHHHHHHHHhhchhhHHHHH-------HHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAA-------ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~ 641 (694)
...+.+++.+-|+...||++|+. |++.++.|+|.+...-+.+..+|.+.......++.|+.+|..+...-+++
T Consensus 32 ~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~ 111 (237)
T PF00261_consen 32 EKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEA 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665555 66677777777777777777777777777778888888888777777666
Q ss_pred cccccccccCCccchhhH-------HHHHHHHhhhhhhhhhhhhhh
Q 005493 642 NSLSNIVHSDNVRLEHDV-------AFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 680 (694)
..-.-=|..--..+|+|+ .-+-.-+.+.+.+|+.....|
T Consensus 112 e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 112 ERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 643222222222234443 334444555555565555444
No 150
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=84.93 E-value=4.7 Score=51.13 Aligned_cols=94 Identities=23% Similarity=0.219 Sum_probs=43.8
Q ss_pred ccccccCCCccccCCCCCCCCcCCCchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHH
Q 005493 541 GNFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADS 620 (694)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 620 (694)
+-.+++.|.+..+-...+|+....+.+.+.. ++..+..+-..++.++..+......++..+..+...++++...+..+
T Consensus 637 riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1163)
T COG1196 637 RIVTLDGDLVEPSGSITGGSRNKRSSLAQKR--ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL 714 (1163)
T ss_pred eEEecCCcEEeCCeeeecCCccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666655554444444433333322222 34444444455555555555555555555555544444444444444
Q ss_pred HHHHHHHHHHHhhhhH
Q 005493 621 LKEMELLKEKLAGLEL 636 (694)
Q Consensus 621 ~~~~~~l~~k~~~~~~ 636 (694)
.++++.++..++.++.
T Consensus 715 ~~~~~~~~~~~~~~~~ 730 (1163)
T COG1196 715 ERQLEELKRELAALEE 730 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 151
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.51 E-value=71 Score=35.40 Aligned_cols=144 Identities=18% Similarity=0.183 Sum_probs=71.6
Q ss_pred ceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEE--E-ECCeEEEEccccCCCccccc
Q 005493 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV--R-ASSVLILFGGEDGKRRKLND 225 (694)
Q Consensus 149 ~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~--~-~~~~lyv~GG~~~~~~~~~~ 225 (694)
-++++..+.--|++||.. ..++|++.+.++.--.+ -.+.|....+ . .++..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~i-----~g~lYlWelssG~LL~v------~~aHYQ~ITcL~fs~dgs~iiTgskDg~------ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTI-----SGNLYLWELSSGILLNV------LSAHYQSITCLKFSDDGSHIITGSKDGA------ 146 (476)
T ss_pred eeeeecCCCceEEEeecc-----cCcEEEEEeccccHHHH------HHhhccceeEEEEeCCCcEEEecCCCcc------
Confidence 467777777778887732 12788888877754221 1222322222 2 25788888887754
Q ss_pred eEEeeCCCCcEEEcccCCC-CCCCc---ceeEEEEECCcEEEE-EcCCCCCC----CCCeEEEEEcCCCcEEEeeccCCC
Q 005493 226 LHMFDLKSLTWLPLHCTGT-GPSPR---SNHVAALYDDKNLLI-FGGSSKSK----TLNDLYSLDFETMIWTRIKIRGFH 296 (694)
Q Consensus 226 v~~yd~~t~~W~~l~~~g~-~P~~R---~~hs~~~~~~~~lyv-~GG~~~~~----~~~dv~~yd~~t~~W~~l~~~~~~ 296 (694)
|.+|++.+- +....+ .|.|+ ..|++.+.+ +++ +||.+..- .=+.+-+||+..+.--. . .
T Consensus 147 V~vW~l~~l----v~a~~~~~~~p~~~f~~HtlsITD---l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl--t---i 214 (476)
T KOG0646|consen 147 VLVWLLTDL----VSADNDHSVKPLHIFSDHTLSITD---LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL--T---I 214 (476)
T ss_pred EEEEEEEee----cccccCCCccceeeeccCcceeEE---EEecCCCccceEEEecCCceEEEEEeccceeeE--E---E
Confidence 444433110 000001 22232 245555543 333 55543221 11235667766653211 1 1
Q ss_pred CCCCcceEEEEE-CCEEEEEcCCCCC
Q 005493 297 PSPRAGCCGVLC-GTKWYIAGGGSRK 321 (694)
Q Consensus 297 p~~R~~~sav~~-~~~iyV~GG~~~~ 321 (694)
..|+.-+++++. .++.+.+|+..+.
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcce
Confidence 345665665554 4666777776654
No 152
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.33 E-value=2.6 Score=37.53 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=37.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhh
Q 005493 604 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (694)
Q Consensus 604 ~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (694)
..++..-.++|+++....++++.||..+..+.+ +|.+|.-|.+-|+..|++..+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E--------------EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLE--------------ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhc
Confidence 345555667777777777777777777777663 467777777777777766544
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.33 E-value=6.3 Score=46.73 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSR-------QEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~-------~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
+++..++..+......|..+|.......|+++..+..+.+.| ++|||||++-.+-...|+..|+...
T Consensus 442 ~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 442 QELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445666666666666677666666663333 4566666665554444444444443
No 154
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.29 E-value=5.3 Score=45.43 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV--------------LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~--------------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
-++.+|..|--+...|..+++.|+..+..+++++-.. ..-+..+|..+..+.++...|..-|+.+.
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4556666666666666666766666666666655543 44445555555555555555555555554
Q ss_pred HhHhhhcccccccccCCccchhhHHHHHHH
Q 005493 636 LAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (694)
Q Consensus 636 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
..-++.-.|.+=-+.-..-|.+|++|++-+
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 444444444444444555677888888743
No 155
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=84.10 E-value=5.7 Score=45.53 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHH
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 624 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~ 624 (694)
-=+|+-+-++++.+|+..+.--++.++.-+..|.++|..|+++||-+...++.+
T Consensus 475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 346777788899999999999999999999999999999999999988655433
No 156
>PRK11281 hypothetical protein; Provisional
Probab=83.91 E-value=6.7 Score=48.92 Aligned_cols=106 Identities=24% Similarity=0.226 Sum_probs=74.4
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHh-------------hHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK-------------SRQEMEKKLADSLKEMELLKEKLAGL----- 634 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~-------------~~~~~e~~~~~~~~~~~~l~~k~~~~----- 634 (694)
.++...-++...|+++|++|-+..++|.++++..-+ +..++|.+|+....+.+.+++.+++.
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788888888888888888888876422 23568888888888888888888877
Q ss_pred ------hHhHhh----------hcc-cccccccC-------CccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 635 ------ELAQEE----------ANS-LSNIVHSD-------NVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 635 ------~~~~e~----------~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
|+||.. .++ |.+...++ ...|+.|.+.|+|-.+-.|+||.+...
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~ 220 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQ 220 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444433 222 33322222 455688999999999999999977544
No 157
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=83.70 E-value=5.8 Score=39.15 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=29.1
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHhh
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQE-MEKKLADSLKEMELLKEKLAG 633 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~-~e~~~~~~~~~~~~l~~k~~~ 633 (694)
.|.+-..+-.+|....+..++++|+..+..+..++ .+++.+...+|++.||++|+.
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444443 223333444555555555555
No 158
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.68 E-value=65 Score=34.26 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=78.4
Q ss_pred CEEEEEccccCCCC---Cc-cEEEEEECCCC-----cEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceE
Q 005493 157 KKVLLVGGKTDSGS---DR-VSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (694)
Q Consensus 157 ~~Iyv~GG~~~~~~---~~-~~v~~yd~~t~-----~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 227 (694)
...+++|-...... .. ..++.|+.... +++.+.. .+..-.-.+++.+++++++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 46666665432111 12 57999998885 5655542 2223335566777888666654 5588
Q ss_pred EeeCCCCc-EEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEE
Q 005493 228 MFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (694)
Q Consensus 228 ~yd~~t~~-W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav 306 (694)
+|++.... +.... ....+-+..++.+.++. +++|-.... -.++.|+.+..+-..+... +.++...++.
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~--I~vgD~~~s---v~~~~~~~~~~~l~~va~d---~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNY--ILVGDAMKS---VSLLRYDEENNKLILVARD---YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTE--EEEEESSSS---EEEEEEETTTE-EEEEEEE---SS-BEEEEEE
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccE--EEEEEcccC---EEEEEEEccCCEEEEEEec---CCCccEEEEE
Confidence 88888777 87775 44444455666666664 445533211 1355667766667777654 5567666666
Q ss_pred EE-CCEEEEEcC
Q 005493 307 LC-GTKWYIAGG 317 (694)
Q Consensus 307 ~~-~~~iyV~GG 317 (694)
.+ ++..++++-
T Consensus 180 ~l~d~~~~i~~D 191 (321)
T PF03178_consen 180 FLVDEDTIIVGD 191 (321)
T ss_dssp EE-SSSEEEEEE
T ss_pred EecCCcEEEEEc
Confidence 66 555444443
No 159
>PRK09039 hypothetical protein; Validated
Probab=83.61 E-value=4.1 Score=44.19 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFS 604 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~ 604 (694)
....+.+.+=.+-+.|..||++|.+.++.+|+.++
T Consensus 71 le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 71 LERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555566666666666666666544
No 160
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.18 E-value=5.1 Score=47.52 Aligned_cols=53 Identities=30% Similarity=0.299 Sum_probs=33.9
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHhhhh
Q 005493 583 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADS--------LKEMELLKEKLAGLE 635 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~--------~~~~~~l~~k~~~~~ 635 (694)
..||.+|.+-.+.+-.+||+|...-+.|++.|++-+.. .+--|.+|.+..+||
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE 551 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLE 551 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHH
Confidence 46777777777777777777777766666666655543 134455666666665
No 161
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=83.11 E-value=1.2e+02 Score=36.79 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=45.3
Q ss_pred CeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCc------cceEEEEECCEEEEEcCCCCCCCcCc
Q 005493 42 ECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPR------FNHAAAVIGNKMIVVGGESGNGLLDD 115 (694)
Q Consensus 42 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R------~~hs~~~~~~~lyv~GG~~~~~~~~~ 115 (694)
.....+||......+.-...+-.-++ ......|+.-. ++.+.++ ...+-+++++.||+... .+.
T Consensus 136 ~~W~~yg~~~~~~RySpL~qIn~~NV--~~L~~aWt~~t--Gd~~~~~~~~~~~~e~TPlvvgg~lYv~t~------~~~ 205 (764)
T TIGR03074 136 GDWAAYGRTQAGQRYSPLDQINPDNV--GNLKVAWTYHT--GDLKTPDDPGEATFQATPLKVGDTLYLCTP------HNK 205 (764)
T ss_pred CCccccCCCCcccccCcccccCcccc--cCceEEEEEEC--CCccccccccccccccCCEEECCEEEEECC------CCe
Confidence 44777788555444433222111111 13456787643 3443322 23455677999999754 356
Q ss_pred EEEEECCCC--cEEEccc
Q 005493 116 VQVLNFDRF--SWTAASS 131 (694)
Q Consensus 116 v~~yd~~t~--~W~~~~~ 131 (694)
++.+|..|+ .|+.-+.
T Consensus 206 V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 206 VIALDAATGKEKWKFDPK 223 (764)
T ss_pred EEEEECCCCcEEEEEcCC
Confidence 889998875 6887654
No 162
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.62 E-value=7.7 Score=38.46 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=28.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhc
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 642 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~ 642 (694)
|.+|+++..+|..+...++.-++|+..+++--|-++
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667889999999988899998999988887544433
No 163
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.57 E-value=10 Score=35.61 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchh
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 657 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~ 657 (694)
++-+...++.++..+-....+.|..+.++.+-.+.+|..+..+...+..+|.++...+...-.+-+ ..--+.-||.
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~----l~rriq~LEe 87 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQ----LNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH----HHhhHHHHHH
Confidence 344444555555555555555555555554444444433333333333333333333322111111 1111223455
Q ss_pred hHHHHHHHHhhhhhhhh
Q 005493 658 DVAFLKAVLDDTQKVNC 674 (694)
Q Consensus 658 ~~~~~~~~~~~~~~~~~ 674 (694)
|+.-.-.-|.+|...|.
T Consensus 88 ele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 164
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.55 E-value=3 Score=49.17 Aligned_cols=92 Identities=26% Similarity=0.287 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccc
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~ 649 (694)
++|++|.+|=.-..+--+.|..+.-+++-|||.|+++-+...+.=+|++...++++ |.+.+.+-|+.--=+..-
T Consensus 959 ~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~------a~lr~Ke~efeetmdaLq 1032 (1243)
T KOG0971|consen 959 DRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQ------ALLRKKEKEFEETMDALQ 1032 (1243)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 67777777766666666678889999999999999998888887777775555443 222222222222234455
Q ss_pred cCCccchhhHHHHHHHHh
Q 005493 650 SDNVRLEHDVAFLKAVLD 667 (694)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~ 667 (694)
+|=--||.|.+-||--|.
T Consensus 1033 ~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 1033 ADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred HHHHHHHhhHHHHHHHhh
Confidence 555668888888888873
No 165
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.46 E-value=5.2 Score=44.30 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=9.7
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHH
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNRE 597 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~ 597 (694)
+++++++-.+-+.++.|++.+...++
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~ 168 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQ 168 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 166
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.37 E-value=9.4 Score=38.95 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~ 638 (694)
-.+.++..+-.+..--..-|.+|.+.++.+-|++..+....+.++........+...+++|++..+.++
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445577788888888888888877788888877777777777777777766554
No 167
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.33 E-value=3.3 Score=49.27 Aligned_cols=97 Identities=33% Similarity=0.379 Sum_probs=62.4
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHH---H--------hhHHHHHHHHHHH----HHHHH----HHHHHHhhhhHhH---
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSV---L--------KSRQEMEKKLADS----LKEME----LLKEKLAGLELAQ--- 638 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~---~--------~~~~~~e~~~~~~----~~~~~----~l~~k~~~~~~~~--- 638 (694)
+-..|.+||++|+..+-.+|-..+-+ | .-|+|-|.|+.++ .++++ .|+.||+++...-
T Consensus 25 e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~ 104 (769)
T PF05911_consen 25 EAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAES 104 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999888888877654 2 3466777777653 34444 4446666554322
Q ss_pred -hhhcccccccc----------cCCccchhhHHHHHHHHhhhhhhhhhhh
Q 005493 639 -EEANSLSNIVH----------SDNVRLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 639 -e~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
-|..+|++.+. -..-+.|.|+.-|++-|+.++||.-+.+
T Consensus 105 ~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lk 154 (769)
T PF05911_consen 105 AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLK 154 (769)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444554322 2234556778889999999999987765
No 168
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.87 E-value=59 Score=33.94 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=64.1
Q ss_pred ECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcce-eeEEEEE--CCeEEEEccccCCCccccceEEeeC
Q 005493 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS-GHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 231 (694)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~-~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 231 (694)
-++.+|+.-= .-+-+-+.|+.+..=..++ .|.+.. +.--+.. -+.+++. . .-...+++||+
T Consensus 198 pdGsvwyasl------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit----t--wg~g~l~rfdP 261 (353)
T COG4257 198 PDGSVWYASL------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT----T--WGTGSLHRFDP 261 (353)
T ss_pred CCCcEEEEec------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe----c--cCCceeeEeCc
Confidence 3677777521 1235667788777555554 243311 1111122 2577776 1 12467999999
Q ss_pred CCCcEEEcccCCCCCCCcceeEEEEECCc-EEEEEcCCCCCCCCCeEEEEEcCCCcEEEeec
Q 005493 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
.+..|......|.-| |-. ...+++. ++++.- -..+.+.+||+++.+.+.++.
T Consensus 262 s~~sW~eypLPgs~a--rpy--s~rVD~~grVW~se-----a~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 262 SVTSWIEYPLPGSKA--RPY--SMRVDRHGRVWLSE-----ADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccccceeeeCCCCCC--Ccc--eeeeccCCcEEeec-----cccCceeecCcccceEEEecC
Confidence 999999985433322 222 2333332 355421 113569999999999998854
No 169
>PTZ00421 coronin; Provisional
Probab=81.64 E-value=1e+02 Score=35.19 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=52.6
Q ss_pred CeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcE
Q 005493 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (694)
Q Consensus 208 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W 287 (694)
+.+++.||.+. .+.+||+.+.+-...- . .... .-.+++...+..+++.|+.++ .+.+||+.++.-
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~-~h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVI-K-CHSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEE-c-CCCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcE
Confidence 35777777553 4778888776532211 0 1111 122333333333677777654 488999987653
Q ss_pred E-EeeccCCCCCCCcceEEEEE-CCEEEEEcCCCCCCCcCeEEEEECCCC
Q 005493 288 T-RIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 335 (694)
Q Consensus 288 ~-~l~~~~~~p~~R~~~sav~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~ 335 (694)
. .+... ...+. ..++.. ++..++..|.+.. ....+.+||+.+.
T Consensus 203 v~tl~~H---~~~~~-~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~ 247 (493)
T PTZ00421 203 VSSVEAH---ASAKS-QRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKM 247 (493)
T ss_pred EEEEecC---CCCcc-eEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCC
Confidence 2 22111 11111 112222 3344455554321 1245888998754
No 170
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.59 E-value=94 Score=34.65 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=90.7
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
...+|.+|........+... +..-.. -...-+++.+++...... ...+|++|+.+.+=..+. ..+.. .
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~---~~~v~~-p~wSPDG~~la~~s~~~~---~~~I~~~dl~~g~~~~l~---~~~g~--~ 242 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSS---PEPIIS-PAWSPDGTKLAYVSFESK---KPVVYVHDLATGRRRVVA---NFKGS--N 242 (427)
T ss_pred ccEEEEECCCCCCceEeccC---CCCccc-ceEcCCCCEEEEEEccCC---CcEEEEEECCCCCEEEee---cCCCC--c
Confidence 35799998866555544321 111111 111124544444433221 256999999888766554 22211 1
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECC-EEEEEcCCCCCCCcCeEEE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLI 329 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~-~iyV~GG~~~~~~~~~v~~ 329 (694)
.+.+.. +++.|++.....+ ..++|.+|+.++..+.+... . .........-++ .|++.....+ ...+|.
T Consensus 243 ~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~-~~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~ 312 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S-GIDTEPFFSPDGRSIYFTSDRGG---APQIYR 312 (427)
T ss_pred cceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C-CCCcCeEEcCCCCEEEEEecCCC---CcEEEE
Confidence 122222 3443444333222 35799999988877666432 1 111111111144 4554432222 246889
Q ss_pred EECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 330 yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
++..+.....+... ..... ...+.. ++.+|+......+. ..++++|+...+
T Consensus 313 ~~~~~g~~~~lt~~------g~~~~-~~~~Sp-DG~~Ia~~s~~~g~--~~I~v~d~~~g~ 363 (427)
T PRK02889 313 MPASGGAAQRVTFT------GSYNT-SPRISP-DGKLLAYISRVGGA--FKLYVQDLATGQ 363 (427)
T ss_pred EECCCCceEEEecC------CCCcC-ceEECC-CCCEEEEEEccCCc--EEEEEEECCCCC
Confidence 99888777666421 11111 123433 33455544433322 368888876654
No 171
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.26 E-value=15 Score=42.62 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHH---HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccccccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNRE---AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 648 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~---~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~ 648 (694)
..++..+...-..|+.||......+. +.+.++..+.+...+++.++.....+++.++.+...++.+.|+.++.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~---- 373 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE---- 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 55555555555666666665444444 44444444455555555555554455544444444444444443333
Q ss_pred ccCCccchhhHHHHHHHHhhhhhhhhh
Q 005493 649 HSDNVRLEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (694)
+..+|.++.-|..-|++++.+++.
T Consensus 374 ---~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 374 ---FVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred ---hhchHHHHHHHHHHHHHHHHHHHH
Confidence 333444555444444444444433
No 172
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.25 E-value=6.5 Score=46.57 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=55.9
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHHhhhh--
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-----------LKSRQEMEKKLADSLKEMELLKEKLAGLE-- 635 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~-----------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~-- 635 (694)
...+.++.++..+-..++++++...+.++++++++..+ +++|+++|+++....++.+..+.++...-
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555555555555555555433 56677777777766666666665554332
Q ss_pred -----HhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhh
Q 005493 636 -----LAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSY 676 (694)
Q Consensus 636 -----~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (694)
++..-...+.+.+..+.. -....|.+.+|.+.++.|..+
T Consensus 292 ~~p~~l~~~ll~~~~~q~~~e~~--~~~~~~~~~~l~~~~~~i~~~ 335 (650)
T TIGR03185 292 PLPLLLIPNLLDSTKAQLQKEEQ--SQQNQLTQEELEERDKELLES 335 (650)
T ss_pred cCCHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 233333334444443331 124555666666655555543
No 173
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.15 E-value=9.8 Score=37.39 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
..+..++++-++...++.++.+....++..++++....+.++..++++....++++.+.+.+..+.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666666666666666677777777777777776666666665
No 174
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.00 E-value=27 Score=31.79 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHH
Q 005493 564 PSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL 617 (694)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~ 617 (694)
+.++-....+.+.++=.+..+|..+|+...+.+++|...+..+++..++++...
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~ 67 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK 67 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777777778888999999999999999999988887777665443
No 175
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.99 E-value=3.3 Score=44.96 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=74.6
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCc
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 653 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~ 653 (694)
++.-+.++-+.++++|..+...++++++.+..+-+.-++++++...+.++.+.|+.++...+.--+-|+.|-+-..+++.
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 33445555566677777777777777777777777777888888888888899999988888888888999999999999
Q ss_pred cchhhHHHHHHHHh
Q 005493 654 RLEHDVAFLKAVLD 667 (694)
Q Consensus 654 ~~~~~~~~~~~~~~ 667 (694)
|-+..++-|+.-+.
T Consensus 295 RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 295 RWSEQIEELEEQLK 308 (344)
T ss_dssp CCHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc
Confidence 99998888776554
No 176
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.98 E-value=12 Score=40.06 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKV 672 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~ 672 (694)
.+||.-|||.++-.|+.
T Consensus 270 ~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 270 FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888888888888775
No 177
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.92 E-value=8.8 Score=39.09 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=63.2
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
+...++|.+++.+|+++.+...++|-..-+-....|.-...+-.+|.+.+++.+...+||..||..+-.+.+.
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999998888888888888888888888888888888999999888887643
No 178
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=80.82 E-value=7.5 Score=49.18 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 005493 585 LEGQLAA 591 (694)
Q Consensus 585 l~~~l~~ 591 (694)
++.+|..
T Consensus 313 ~~~~l~~ 319 (1164)
T TIGR02169 313 KERELED 319 (1164)
T ss_pred HHHHHHH
Confidence 3333333
No 179
>PTZ00421 coronin; Provisional
Probab=80.70 E-value=1.1e+02 Score=34.95 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=74.4
Q ss_pred CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCc
Q 005493 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (694)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (694)
+.+++.||.+ ..+.+||+.+.+-...-. .... .-.+++. .++.+++.|+.+. .+.+||+.+.+
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l~--~h~~--~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVIK--CHSD--QITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEEc--CCCC--ceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 4577777754 278899998765322110 0111 1112222 2577888887653 47889988765
Q ss_pred EE-EcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcE--EEeeccCCCCCCCcceEEEEE--CC
Q 005493 236 WL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVLC--GT 310 (694)
Q Consensus 236 W~-~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W--~~l~~~~~~p~~R~~~sav~~--~~ 310 (694)
-. .+. .....+....+...++. .++..|.+.. .-..+.+||+.+... ..... .......+..+ ++
T Consensus 202 ~v~tl~---~H~~~~~~~~~w~~~~~-~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~~~-----d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 202 IVSSVE---AHASAKSQRCLWAKRKD-LIITLGCSKS-QQRQIMLWDTRKMASPYSTVDL-----DQSSALFIPFFDEDT 271 (493)
T ss_pred EEEEEe---cCCCCcceEEEEcCCCC-eEEEEecCCC-CCCeEEEEeCCCCCCceeEecc-----CCCCceEEEEEcCCC
Confidence 32 121 11111111112222334 4444454321 124688999865331 11110 11112222233 45
Q ss_pred EEEEEcCCCCCCCcCeEEEEECCCCcEEEe
Q 005493 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 311 ~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l 340 (694)
.++++||... ..+.+||+.+......
T Consensus 272 ~~L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 272 NLLYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred CEEEEEEeCC----CeEEEEEeeCCceEEE
Confidence 6666666322 2488999988776544
No 180
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.55 E-value=43 Score=38.10 Aligned_cols=126 Identities=12% Similarity=0.137 Sum_probs=62.2
Q ss_pred CCcceeEEEEECC-cEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcC
Q 005493 247 SPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (694)
Q Consensus 247 ~~R~~hs~~~~~~-~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~ 325 (694)
.|+++.-+++..- .-||+.|- -++||+|+++.++|-..-.. ..+-..++.+---..++.+||-.+.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g~---- 198 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDGV---- 198 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEcccccccccccc---ccccceeeeecCccceEEecccCce----
Confidence 3455555554432 22555442 24799999999998643221 1122222222223578888887664
Q ss_pred eEEEEECCCCcEEEeecCCCC---CCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 326 ETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 326 ~v~~yd~~t~~W~~l~~~~~~---~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+..+|+.+..--.......+ .|......+.+.+...+.+--+.+|-. ...+++||+.+.+
T Consensus 199 -VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 -VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASK 261 (703)
T ss_pred -EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCC
Confidence 78888877543221111212 122222223333333332233334433 2357888876654
No 181
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.49 E-value=6.9 Score=46.37 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHH--hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAA--EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~--e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~ 643 (694)
.+++.+++.+...++.+|+..-..+..+ +.+.+.+.+.++++++++..+.++++.+++++..++...++.++
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888887776666553 45667777777777777777777777777776666555444443
No 182
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.38 E-value=9.9 Score=40.60 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=26.0
Q ss_pred CCchhhhhhHHHHHHHHhhchhhHH-------HHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHH
Q 005493 564 PSSIYQFYESKMAALIRKNGILEGQ-------LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK 622 (694)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~l~~~-------l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~ 622 (694)
++++....+.++ ++|+.++.|+.+ ...-.-.++.++.++..+-..++.+.++++.+..
T Consensus 108 ~~d~r~lm~~Qf-~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~ 172 (312)
T smart00787 108 SPDVKLLMDKQF-QLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNS 172 (312)
T ss_pred CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554333 455555555432 1123334444444444444444444444444333
No 183
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.23 E-value=7.2 Score=38.51 Aligned_cols=64 Identities=27% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhh--------HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNF--------SSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~--------~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
..+..+|++-..++.+++++....+.+.+.. ...-++.++++++|+.+.+|++.||++..++++
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666676677777666655544333222 233567778888888888899999998888864
No 184
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.75 E-value=6.7 Score=42.50 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhh
Q 005493 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS 609 (694)
Q Consensus 575 ~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~ 609 (694)
++++++.+..++|.|.+|-+.+.|-||.-|.+...
T Consensus 1 m~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq 35 (459)
T KOG0288|consen 1 MAPLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQ 35 (459)
T ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888999999999999999999998887433
No 185
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=79.25 E-value=11 Score=39.43 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=53.3
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHh-----------hH----HHHHHHHHHHHHHHHHHHHHHh
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK-----------SR----QEMEKKLADSLKEMELLKEKLA 632 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~-----------~~----~~~e~~~~~~~~~~~~l~~k~~ 632 (694)
+...+.+++++-.+|+.|.|||++|...-+.-||-...+.. .. .-+|++-...+.+.-.|||++=
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34778889999999999999999999888877775444421 11 1256666667778888888887
Q ss_pred hhhHhHhh
Q 005493 633 GLELAQEE 640 (694)
Q Consensus 633 ~~~~~~e~ 640 (694)
-.|.++.|
T Consensus 296 qyEkEKaE 303 (305)
T PF14915_consen 296 QYEKEKAE 303 (305)
T ss_pred HHHHHhhc
Confidence 77765543
No 186
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.08 E-value=11 Score=45.25 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA 618 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~ 618 (694)
..+++++..+.++-..+++++++.....|-.|.....+.-+-++|++.+.
T Consensus 783 ~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~ 832 (1174)
T KOG0933|consen 783 ANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEIS 832 (1174)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888999988888887777777776555555544443
No 187
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.96 E-value=13 Score=44.67 Aligned_cols=21 Identities=33% Similarity=0.222 Sum_probs=14.7
Q ss_pred hhhHhHhhhcccccccccCCc
Q 005493 633 GLELAQEEANSLSNIVHSDNV 653 (694)
Q Consensus 633 ~~~~~~e~~~~~~~~~~~~~~ 653 (694)
.+|.+|++-++|++...+.+-
T Consensus 372 ~~e~~e~~~eslt~G~Ss~~~ 392 (1174)
T KOG0933|consen 372 LLEKAEELVESLTAGLSSNED 392 (1174)
T ss_pred HHHHHHHHHHHHhcccccCcc
Confidence 355667777788888777655
No 188
>PTZ00420 coronin; Provisional
Probab=78.95 E-value=1.4e+02 Score=34.90 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=72.8
Q ss_pred CEEEEEccccCCCCCccEEEEEECCCCcEE-EeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCC
Q 005493 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 234 (694)
..+++.||.+ ..+.+||+.+.+=. .+. .+. .-.++.. .++.+++.|+.+ ..+.+||+.+.
T Consensus 138 ~~iLaSgS~D------gtIrIWDl~tg~~~~~i~----~~~--~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg 199 (568)
T PTZ00420 138 YYIMCSSGFD------SFVNIWDIENEKRAFQIN----MPK--KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQ 199 (568)
T ss_pred CeEEEEEeCC------CeEEEEECCCCcEEEEEe----cCC--cEEEEEECCCCCEEEEEecC------CEEEEEECCCC
Confidence 3455666653 26888898876521 111 111 1222222 357777776643 34888999876
Q ss_pred cEEE-cccCCCCCCCcceeEEEE----ECCcEEEEEcCCCCCCCCCeEEEEEcCC-CcEEEeeccCCCCCCCcceEEEEE
Q 005493 235 TWLP-LHCTGTGPSPRSNHVAAL----YDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC 308 (694)
Q Consensus 235 ~W~~-l~~~g~~P~~R~~hs~~~----~~~~~lyv~GG~~~~~~~~dv~~yd~~t-~~W~~l~~~~~~p~~R~~~sav~~ 308 (694)
.-.. +. + ....+..-.... -++. .++.+|.+.. ....+.+||+.+ ..-...... . ...+.....+
T Consensus 200 ~~i~tl~--g-H~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~l---d-~~~~~L~p~~ 270 (568)
T PTZ00420 200 EIASSFH--I-HDGGKNTKNIWIDGLGGDDN-YILSTGFSKN-NMREMKLWDLKNTTSALVTMSI---D-NASAPLIPHY 270 (568)
T ss_pred cEEEEEe--c-ccCCceeEEEEeeeEcCCCC-EEEEEEcCCC-CccEEEEEECCCCCCceEEEEe---c-CCccceEEee
Confidence 4321 11 1 011111111111 1334 5666665542 223688999874 221111111 0 0111111112
Q ss_pred ---CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEe
Q 005493 309 ---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 309 ---~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l 340 (694)
.+.+|+.|..++. +++|++....-..+
T Consensus 271 D~~tg~l~lsGkGD~t-----Ir~~e~~~~~~~~l 300 (568)
T PTZ00420 271 DESTGLIYLIGKGDGN-----CRYYQHSLGSIRKV 300 (568)
T ss_pred eCCCCCEEEEEECCCe-----EEEEEccCCcEEee
Confidence 4678888865543 88888877654443
No 189
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.90 E-value=13 Score=30.66 Aligned_cols=61 Identities=26% Similarity=0.337 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhhchhhHHHHH---HHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 571 YESKMAALIRKNGILEGQLAA---ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
-|..|++|+.+...|+.+-.. .+..+-+..+.+. ++..++.++++....+.+.|++++...
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e---~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE---KQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356788888888777654333 3333333333333 444556677777777777777776654
No 190
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.80 E-value=8.7 Score=46.89 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=48.7
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
.++.+.+-++....+++|.-.+...+.+||.+...-+++.++|+-++....+.+++.+++..++.-
T Consensus 390 k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~ 455 (1293)
T KOG0996|consen 390 KKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEEL 455 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHH
Confidence 355666666777777778888888888888888888888888877777777777777777766543
No 191
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.06 E-value=9.1 Score=48.58 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=18.4
Q ss_pred CccchhhHHHHHHHHhhhhhhhhhhhhh
Q 005493 652 NVRLEHDVAFLKAVLDDTQKVNCSYYTQ 679 (694)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (694)
-.-+|++++-+...+.+..+++.+.+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (1163)
T COG1196 462 LKELERELAELQEELQRLEKELSSLEAR 489 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777766653
No 192
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=77.48 E-value=19 Score=40.67 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHhhch--hhHHHHHHHhhHH
Q 005493 569 QFYESKMAALIRKNGI--LEGQLAAALVNRE 597 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~--l~~~l~~~~~~~~ 597 (694)
+++..||+.|-|+++. ||.||+-.--.+|
T Consensus 312 ~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKE 342 (518)
T PF10212_consen 312 QQSQEKIAKLEQEKEHWMLEAQLAKIKLEKE 342 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999985 8899887544444
No 193
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=77.17 E-value=21 Score=28.33 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHH
Q 005493 576 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL 617 (694)
Q Consensus 576 ~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~ 617 (694)
.+=||-+-.+..+|..+.+..-++|+.|-.+-+-.++++.++
T Consensus 7 ~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei 48 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEI 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555544433333333333
No 194
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=76.99 E-value=16 Score=35.37 Aligned_cols=95 Identities=11% Similarity=0.181 Sum_probs=47.3
Q ss_pred hchhhHHHHHHHhhHHHHhhhhHHHH----hhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchh
Q 005493 582 NGILEGQLAAALVNREAAEKNFSSVL----KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 657 (694)
Q Consensus 582 ~~~l~~~l~~~~~~~~~~e~~~~~~~----~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~ 657 (694)
.....++|+.|...+++|++-++..- +.+++.++-++.+.++.+..++++ ++.|++|++++..-.++
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~i--i~~A~~ea~~~~~~a~~------- 125 (167)
T PRK08475 55 INKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKI--EKQTKDDIENLIKSFEE------- 125 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-------
Confidence 33344444444444444444444432 234444555555555555554443 55666776665443333
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhc
Q 005493 658 DVAFLKAVLDDTQKVNCSYYTQLMHEFLHDELAG 691 (694)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (694)
.+--+.++-+..-|..++.|...+.|++
T Consensus 126 ------~ie~Ek~~a~~elk~eii~~~~~~~~~~ 153 (167)
T PRK08475 126 ------LMEFEVRKMEREVVEEVLNELFESKKVS 153 (167)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 2333444555555666666666554444
No 195
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.92 E-value=19 Score=31.73 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHH
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAA 599 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 599 (694)
+|.+..+++.+.+....|+.|+.-...-+++.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888889999999988888885544443333
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.91 E-value=5.1 Score=40.12 Aligned_cols=24 Identities=25% Similarity=0.015 Sum_probs=11.5
Q ss_pred chhhHHHHHHHHhhhhhhhhhhhh
Q 005493 655 LEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
|+.+.+-|+.-|..+|+|+...+.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555444433
No 197
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.89 E-value=4.3 Score=45.82 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhh---HHHHhhhhHHH-------HhhHHHHHHHHHHHHHHHHHHH----HHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVN---REAAEKNFSSV-------LKSRQEMEKKLADSLKEMELLK----EKLAGLE 635 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~e~~~~~~-------~~~~~~~e~~~~~~~~~~~~l~----~k~~~~~ 635 (694)
.--.++..+=..++.|+.||..+... .|-.+|..+++ ...-.+|+-|.+.-.+.++.|+ +|-...|
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e 311 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIE 311 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666677777777743221 12222222222 1111233333333333444443 3334444
Q ss_pred HhHhhhcccccccccCCccch------hhHHHHHHHHhhhhhhhhhhhhhhhh
Q 005493 636 LAQEEANSLSNIVHSDNVRLE------HDVAFLKAVLDDTQKVNCSYYTQLMH 682 (694)
Q Consensus 636 ~~~e~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (694)
+-|++--.|.|+|---+..-+ ||..-|+-+|++.|++++..+..+-.
T Consensus 312 ~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 312 KLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666667887765554333 67777888888888877776655433
No 198
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.76 E-value=32 Score=34.47 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=63.3
Q ss_pred hhhhhhHHHHHHHHhhchhhH---HHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc
Q 005493 567 IYQFYESKMAALIRKNGILEG---QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (694)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~---~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~ 643 (694)
|+.-|.+-+..+.+-...|++ .+.-+.+.++++|..+.-+.+=+++-+.....+..|.-.+++++..+++
T Consensus 35 ~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~------- 107 (246)
T KOG4657|consen 35 IQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRR------- 107 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 343444444444333333333 3445777788888888888887777777777777777777777776654
Q ss_pred cccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Q 005493 644 LSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDE 688 (694)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (694)
-|+-|+.|..=+|+++-. +.+..+--.-++.++++|+
T Consensus 108 -------n~Q~lkeE~dd~keiIs~-kr~~~~Ka~e~~~kRkQds 144 (246)
T KOG4657|consen 108 -------NLQLLKEEKDDSKEIISQ-KRQALSKAKENAGKRKQDS 144 (246)
T ss_pred -------HHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 133445555566666532 2232233445566666665
No 199
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=76.76 E-value=16 Score=36.34 Aligned_cols=70 Identities=24% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH-------------------------HHHHHHHH
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-------------------------SLKEMELL 627 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~-------------------------~~~~~~~l 627 (694)
+.|.+|-+....+|.+|.+|....-+|-+....+...|-...+.+.. ..++.+.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~a 111 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEA 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHH
Confidence 56777777778888888888888888888887776666644444432 22344566
Q ss_pred HHHHhhhhHhHhhhc
Q 005493 628 KEKLAGLELAQEEAN 642 (694)
Q Consensus 628 ~~k~~~~~~~~e~~~ 642 (694)
|+++..+|.++|+..
T Consensus 112 k~~l~~aE~~~e~~~ 126 (207)
T PF05546_consen 112 KEALEEAEEKVEEAF 126 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655543
No 200
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.70 E-value=12 Score=35.37 Aligned_cols=29 Identities=24% Similarity=0.101 Sum_probs=16.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Q 005493 660 AFLKAVLDDTQKVNCSYYTQLMHEFLHDE 688 (694)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (694)
.-+|.-+..++.-+.+.+.+..+|...+|
T Consensus 111 k~~kee~~klk~~~~~~~tq~~~e~rkke 139 (151)
T PF11559_consen 111 KQEKEELQKLKNQLQQRKTQYEHELRKKE 139 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455666777777766655
No 201
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.54 E-value=14 Score=41.15 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS-RQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~-~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
...+++++.++++|+.|..+.+...+.......+.+.++++ ++++++..+....++..|+..|..+.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999998888887777777777777777754 66777766666667777777666664
No 202
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.25 E-value=23 Score=28.15 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=43.7
Q ss_pred HHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhh
Q 005493 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (694)
Q Consensus 587 ~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~ 641 (694)
..|++=++.+......|.-|-.+-..++++|+++.+-...|..+|..++..-||+
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777888888888877888889999988888888888888888766664
No 203
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.14 E-value=23 Score=36.46 Aligned_cols=53 Identities=25% Similarity=0.230 Sum_probs=19.4
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
.|+.++..|....+..|+.-.-+...++.|+.......++.+.|..+++.++.
T Consensus 37 ~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 37 ELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555555444445555555555555543
No 204
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.45 E-value=16 Score=37.39 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=8.5
Q ss_pred Hhhhhhhhhhhhhhhhh
Q 005493 666 LDDTQKVNCSYYTQLMH 682 (694)
Q Consensus 666 ~~~~~~~~~~~~~~~~~ 682 (694)
+++...++.+-|+.|..
T Consensus 154 i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 154 IREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555543
No 205
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.39 E-value=16 Score=36.12 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=48.1
Q ss_pred HHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHH
Q 005493 588 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (694)
Q Consensus 588 ~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
.++-+++..-++|+.+....+...++++++....+....|+.|...+++.-++....-+-.| ..+++|||.-
T Consensus 107 ~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~------~~ei~~lk~~ 178 (189)
T PF10211_consen 107 SIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH------QEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 44445556666676666777777777777777777777777777777766555554444333 5678888875
No 206
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.37 E-value=17 Score=35.77 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHH
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL 621 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~ 621 (694)
+..+-..++.++......++..+..+.++-+...++++...+..
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444555555444555555444444
No 207
>PRK03918 chromosome segregation protein; Provisional
Probab=75.09 E-value=14 Score=45.41 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 588 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 588 ~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
+|.+....+++.+++++.+.+...++++++..+..+.+.++.++..++.++++.+.+
T Consensus 187 ~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l 243 (880)
T PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666666666666666665555544
No 208
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.79 E-value=14 Score=42.73 Aligned_cols=114 Identities=25% Similarity=0.262 Sum_probs=83.7
Q ss_pred hhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHH-----H-------HhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS-----V-------LKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~-----~-------~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
++..|.+++..|-+++..|+.|+ ..-.++.+.+. | ++.++..+.++.....|.+.||+.|.++
T Consensus 504 ~i~~~~ke~~~Le~En~rLr~~~-----e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~l 578 (716)
T KOG4593|consen 504 KIEQYLKELELLEEENDRLRAQL-----ERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTAL 578 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665554222 22223333332 1 6899999999999999999999999999
Q ss_pred hHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 005493 635 ELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLH 686 (694)
Q Consensus 635 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (694)
|.-.++.-+..=+||+==.. =-|||-||+-...-.|-..-.+++++.+...
T Consensus 579 e~~~~~~~d~~i~~~s~~~~-~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~e 629 (716)
T KOG4593|consen 579 EGDKMQFRDGEIAVHSLLAF-SKEVAQLKKEVESAEKRNQRLKEVFASKIQE 629 (716)
T ss_pred hccCCcccchhhHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888882111 3589999999999999999999999887654
No 209
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=74.66 E-value=14 Score=40.54 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=31.5
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc
Q 005493 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (694)
Q Consensus 597 ~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~ 643 (694)
+..+.+.+.+.+..+++++++..+.++.+.+++.++.++...++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (378)
T TIGR01554 23 EKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEETKR 69 (378)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33444555555566678888888888888888777777666555554
No 210
>PLN02939 transferase, transferring glycosyl groups
Probab=74.49 E-value=10 Score=46.14 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=20.2
Q ss_pred cccccCCccchhhHHHHHHHHhhh
Q 005493 646 NIVHSDNVRLEHDVAFLKAVLDDT 669 (694)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~ 669 (694)
+++-.+|+-|-.|+.|||+.|++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 229 DVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999764
No 211
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.97 E-value=18 Score=33.12 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=33.8
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
|-+|-..|..+|+.....-++..++...+-..-.+....+..+..-++.|+.|+..+|.
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555555566666555555555555555555555666666655553
No 212
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.86 E-value=17 Score=45.28 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH---------HhhHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---------LKSRQEMEKKLADSLKEMELLKEKLAGL--------- 634 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~---------~~~~~~~e~~~~~~~~~~~~l~~k~~~~--------- 634 (694)
.+++..-++...+++++++|-+.++++.+++... --+.+++|.++..+..+...+++.++..
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~ 137 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISD 137 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444455667778888888888887777777642 1135677777776666666666665533
Q ss_pred ---------hHhH---hhhcc-cccc-----c--ccCCccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 635 ---------ELAQ---EEANS-LSNI-----V--HSDNVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 635 ---------~~~~---e~~~~-~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
..++ .|.++ |.+- . .+-...|+-|.++|++-++..|.||.|.-.
T Consensus 138 ~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~ 201 (1109)
T PRK10929 138 SLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANN 201 (1109)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 1222 22222 2221 1 112345667899999999999888877543
No 213
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.75 E-value=82 Score=33.40 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHhhchhhHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAA 591 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~ 591 (694)
.....++..|.+++.+|..+|+.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ 45 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELET 45 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 67778899999999999988876
No 214
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.70 E-value=13 Score=41.67 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=38.1
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhhhhHhH-hhhccccccccc
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSVLKS---RQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHS 650 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~---~~~~e~~~~~~~~~~~~l~~k~~~~~~~~-e~~~~~~~~~~~ 650 (694)
++...|..|++...+.+-+.-|......+. .+++.++...+.+++..|++++..+|.+- +....|-|++|.
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 333344444554444444444444332222 22344444455556666666666655433 567889999998
No 215
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.52 E-value=19 Score=33.67 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=24.4
Q ss_pred hhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh
Q 005493 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (694)
Q Consensus 585 l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~ 640 (694)
|+.||...++.+.+.+.+|.++.++|..+.+.+ ++.++||..+|.-+.+
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l-------q~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKEL-------QKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHH
Confidence 455555555555555555555544444444333 4455556666544433
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=73.51 E-value=1.6e+02 Score=32.88 Aligned_cols=119 Identities=10% Similarity=0.041 Sum_probs=59.6
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEcc-ccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG-EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG-~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
.++|.+|+.+.....+... .. ........-+++.++|.. ..+ ...+|.++..+..-..+.. . . +
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~---~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~-~- 336 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSG---AG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G-Y- 336 (429)
T ss_pred EEEEEEECCCCCeEeeccC---CC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C-C-
Confidence 3699999988887766521 11 111111122454444432 222 2468888876654443321 1 1 1
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCC
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~ 319 (694)
..... +++.|++.++ +.++++|+.++.+..+... . ........-+++++++++..
T Consensus 337 -~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 337 -SAQISADGKTLVMING-------DNVVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred -CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEcC
Confidence 12222 4454544443 3588899999998876432 1 11111122256666666543
No 217
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.34 E-value=29 Score=32.45 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=42.0
Q ss_pred HHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 005493 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (694)
Q Consensus 575 ~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~ 638 (694)
-+.+-.+-..||..|..+.+.++.++++..+.-+..+.++.++..++++...|+.-|..+-...
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556777777777777777777777777777777777776666666666665554433
No 218
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=73.18 E-value=1.3e+02 Score=31.64 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=40.5
Q ss_pred CeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeec
Q 005493 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (694)
Q Consensus 275 ~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~ 342 (694)
..+++||+....|.+.+..+. .+|....-+-..+++++---. .+.+.+||+.+.+.+.++.
T Consensus 254 g~l~rfdPs~~sW~eypLPgs--~arpys~rVD~~grVW~sea~-----agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGS--KARPYSMRVDRHGRVWLSEAD-----AGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ceeeEeCcccccceeeeCCCC--CCCcceeeeccCCcEEeeccc-----cCceeecCcccceEEEecC
Confidence 468999999999999876432 233333222234666663221 2358899999999998863
No 219
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.10 E-value=22 Score=38.31 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhhhhhhhhh
Q 005493 659 VAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~ 678 (694)
++-+|+-|++.|+|+.....
T Consensus 225 i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 220
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=73.07 E-value=1.2e+02 Score=31.29 Aligned_cols=180 Identities=19% Similarity=0.222 Sum_probs=93.5
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEE--EECCeEEEEccccCCCccccceEEeeCCC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV--RASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 233 (694)
+++.+..+|. ..|-.||+.++.=..+.. .-..+..-+++ ..+++....||.++. +-++|+.+
T Consensus 51 dk~~LAaa~~-------qhvRlyD~~S~np~Pv~t---~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~ 114 (311)
T KOG0315|consen 51 DKKDLAAAGN-------QHVRLYDLNSNNPNPVAT---FEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRS 114 (311)
T ss_pred CcchhhhccC-------CeeEEEEccCCCCCceeE---EeccCCceEEEEEeecCeEEEecCCCce------EEEEeccC
Confidence 4455555554 278899998765322221 11122222222 246787778876653 45566665
Q ss_pred CcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcce-EEEEE-CCE
Q 005493 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-CGVLC-GTK 311 (694)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~-sav~~-~~~ 311 (694)
-.-.+.- ..+.|.. +++...+..=+|.|-.++ .|+++|+.++..+.... |..-... ++.+. +++
T Consensus 115 ~~~qR~~---~~~spVn--~vvlhpnQteLis~dqsg-----~irvWDl~~~~c~~~li----Pe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 115 LSCQRNY---QHNSPVN--TVVLHPNQTELISGDQSG-----NIRVWDLGENSCTHELI----PEDDTSIQSLTVMPDGS 180 (311)
T ss_pred cccchhc---cCCCCcc--eEEecCCcceEEeecCCC-----cEEEEEccCCccccccC----CCCCcceeeEEEcCCCc
Confidence 4443332 2232222 344445543345454443 49999999997776543 2322222 33333 444
Q ss_pred EEEEcCCCCCCCcCeEEEEECCCCcEE-EeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCC
Q 005493 312 WYIAGGGSRKKRHAETLIFDILKGEWS-VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (694)
Q Consensus 312 iyV~GG~~~~~~~~~v~~yd~~t~~W~-~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~ 373 (694)
+ +.++.+.+ .+|++++-+..-. .+. |......+.+|...+.-.++. ++++.-+.
T Consensus 181 m-l~a~nnkG----~cyvW~l~~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~-k~lat~ss 235 (311)
T KOG0315|consen 181 M-LAAANNKG----NCYVWRLLNHQTASELE--PVHKFQAHNGHILRCLLSPDV-KYLATCSS 235 (311)
T ss_pred E-EEEecCCc----cEEEEEccCCCccccce--EhhheecccceEEEEEECCCC-cEEEeecC
Confidence 4 44444333 4788887664322 221 334456777777777766554 34444444
No 221
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.04 E-value=11 Score=40.08 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=46.5
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCc
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 653 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~ 653 (694)
.+..+..+++.|+.+++.+....+...+.+....+.+..+|..+...-++++.......+++.. -.
T Consensus 62 ~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~--------------i~ 127 (312)
T PF00038_consen 62 QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ--------------IQ 127 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
T ss_pred hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH--------------HH
Confidence 3444566677777777777777777777777776666666666655444444322222222211 12
Q ss_pred cchhhHHHHHHHHhh
Q 005493 654 RLEHDVAFLKAVLDD 668 (694)
Q Consensus 654 ~~~~~~~~~~~~~~~ 668 (694)
.|+.|++|||.+-+.
T Consensus 128 ~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 128 SLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhh
Confidence 356777777777553
No 222
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.86 E-value=15 Score=48.01 Aligned_cols=70 Identities=30% Similarity=0.341 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~ 640 (694)
.+.+...+..+...|..||.+=......||--+....+.++++|+++.+..+.++..+++-+.+++..++
T Consensus 864 le~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~ 933 (1930)
T KOG0161|consen 864 LEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRK 933 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666777776666667777777778888888888887777777666666666554433
No 223
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.58 E-value=11 Score=38.84 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=16.3
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh
Q 005493 601 KNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (694)
Q Consensus 601 ~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~ 640 (694)
..|.-.......|++++..+..+.+.|..|...++.+.+.
T Consensus 26 ~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~r 65 (246)
T PF00769_consen 26 EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQR 65 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444433333
No 224
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=72.51 E-value=2.7e+02 Score=35.18 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=106.8
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccC---CCCCCCCCC-CccceEEEEE--CCEEEEEccccCCCCC
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLS---PSSLPLKIP-ACRGHSLISW--GKKVLLVGGKTDSGSD 171 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~---p~~~~~~~p-~r~~~s~v~~--~~~Iyv~GG~~~~~~~ 171 (694)
++.|||.-..+ +.+.++|+.++.=+.+...+... ......... -..-+.+++. ++.+||....
T Consensus 635 gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------ 703 (1057)
T PLN02919 635 KNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------ 703 (1057)
T ss_pred CCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------
Confidence 45688864422 45788888877655554321100 000000000 0011223332 6788887432
Q ss_pred ccEEEEEECCCCcEEEeeecCCC-------C---CcceeeEEEEE--CCeEEEEccccCCCccccceEEeeCCCCcEEEc
Q 005493 172 RVSVWTFDTETECWSVVEAKGDI-------P---VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~-------p---~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l 239 (694)
.+.+++||+.++....+...|.. + .....+.+++. ++.|||.... .+.+.+||+.++....+
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEE
Confidence 24799999988776554322211 0 01112233333 2458887532 36799999987664322
Q ss_pred ccCCC-CCC--------------Cc--ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCC--C---
Q 005493 240 HCTGT-GPS--------------PR--SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH--P--- 297 (694)
Q Consensus 240 ~~~g~-~P~--------------~R--~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~--p--- 297 (694)
..... .+. .. .-.++++..+..+||.-..+ +.|.+||+.++....+...+.. +
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 10000 000 00 01233443333478765433 4699999999888877644321 0
Q ss_pred --CCC-cceEEEEE--CCEEEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 298 --SPR-AGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 298 --~~R-~~~sav~~--~~~iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
... .....+.+ ++++||.-..+. .+.++|+.+..
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn-----~Irvid~~~~~ 891 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNS-----LIRYLDLNKGE 891 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCC-----EEEEEECCCCc
Confidence 011 11222222 678999876443 58899998765
No 225
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.25 E-value=8.5 Score=31.67 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHH
Q 005493 608 KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (694)
Q Consensus 608 ~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
+--+++|.|++.++..++.|+.+++.++. +.+.|+ +.|--|+++..-||.=
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke---~n~~L~----~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKE---KNNELK----EENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHH----HHHHHHHHHHHHHHHH
Confidence 34467888888888888888888887764 333343 5666667777766643
No 226
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=72.13 E-value=82 Score=34.95 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=20.0
Q ss_pred ECCEEEEEcCCCCCCCcCeEEEEECCCCcEE
Q 005493 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (694)
Q Consensus 308 ~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~ 338 (694)
.++.+++.|+.++. +-++|+.+.+-.
T Consensus 287 ~DgtlLlSGd~dg~-----VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGK-----VCVWDIYSKQCI 312 (476)
T ss_pred cCccEEEeeCCCCC-----EEEEecchHHHH
Confidence 48999999998876 777887765543
No 227
>PRK09039 hypothetical protein; Validated
Probab=72.00 E-value=17 Score=39.50 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=12.8
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
++..|+++|+...+.+++||++.+.+
T Consensus 75 ~~~~l~~~l~~l~~~l~~a~~~r~~L 100 (343)
T PRK09039 75 GNQDLQDSVANLRASLSAAEAERSRL 100 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444
No 228
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=71.91 E-value=27 Score=33.93 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=14.9
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
+|.....++|+.|...+++|++.+...
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (175)
T PRK14472 49 EREKGIQSSIDRAHSAKDEAEAILRKN 75 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666555555555554
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=71.83 E-value=79 Score=36.11 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=43.4
Q ss_pred CCCcceeeEEEEEC--CeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEEC-CcEEEEEcCCCC
Q 005493 194 IPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSK 270 (694)
Q Consensus 194 ~p~~R~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~~lyv~GG~~~ 270 (694)
+-.|+++.-+++.. -.||+.| .-+++|+++++.+.|-..-. ...+-.. ++.++ -+-++.+||..+
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~g-------sg~evYRlNLEqGrfL~P~~---~~~~~lN--~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVG-------SGSEVYRLNLEQGRFLNPFE---TDSGELN--VVSINEEHGLLACGTEDG 197 (703)
T ss_pred eecCcCCccccccCCCccEEEee-------cCcceEEEEccccccccccc---cccccce--eeeecCccceEEecccCc
Confidence 34455666665542 3566654 24679999999999965421 1111111 12222 223888998654
Q ss_pred CCCCCeEEEEEcCCC
Q 005493 271 SKTLNDLYSLDFETM 285 (694)
Q Consensus 271 ~~~~~dv~~yd~~t~ 285 (694)
.|..||+.+.
T Consensus 198 -----~VEfwDpR~k 207 (703)
T KOG2321|consen 198 -----VVEFWDPRDK 207 (703)
T ss_pred -----eEEEecchhh
Confidence 4888888654
No 230
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=71.61 E-value=24 Score=36.50 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=32.4
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHH--HHHHHHHhhhhHhHhhhcccccccc
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM--ELLKEKLAGLELAQEEANSLSNIVH 649 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~--~~l~~k~~~~~~~~e~~~~~~~~~~ 649 (694)
|.....+.|+.|...+++|++.+...-+..++++++-+.++.+. +.-+++-.-++.|++|+..+..-.+
T Consensus 37 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~ 107 (250)
T PRK14474 37 RQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWL 107 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554444444444444333322 2222333345556666665554443
No 231
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.56 E-value=31 Score=41.23 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=29.4
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
+-..|.+|.+.-+..+.+++..+..+-+..+.+.+|+.++.+.+|.|.+|+..+
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555666666666666665544
No 232
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.42 E-value=19 Score=35.86 Aligned_cols=28 Identities=21% Similarity=0.054 Sum_probs=12.1
Q ss_pred chhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 005493 655 LEHDVAFLKAVLDDTQKVNCSYYTQLMH 682 (694)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (694)
|+-+|--||.-+++..-++.+..+.+++
T Consensus 189 l~~ev~~L~~r~~ELe~~~El~e~~~i~ 216 (290)
T COG4026 189 LPGEVYDLKKRWDELEPGVELPEEELIS 216 (290)
T ss_pred chhHHHHHHHHHHHhcccccchHHHHHH
Confidence 3344444444444444444444443333
No 233
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=70.90 E-value=1.5e+02 Score=31.49 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=66.5
Q ss_pred CeEEEEccccCC---Cccc-cceEEeeCCCC-----cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEE
Q 005493 208 SVLILFGGEDGK---RRKL-NDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 278 (694)
Q Consensus 208 ~~lyv~GG~~~~---~~~~-~~v~~yd~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~ 278 (694)
..++++|..-.. .... ..++.|++... +++.+. ..+..-.-.+++.+++. +++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~-lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGR-LVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTE-EEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCE-EEEeec-------CEEE
Confidence 366666654211 1122 67999999884 555543 22222235567777777 555544 3688
Q ss_pred EEEcCCCc-EEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeec
Q 005493 279 SLDFETMI-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (694)
Q Consensus 279 ~yd~~t~~-W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~ 342 (694)
+|++.... +...... ..+-...++...++.|+ +|-...+ -.++.|+....+...+..
T Consensus 111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~-vgD~~~s---v~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFY---DSPFYITSLSVFKNYIL-VGDAMKS---VSLLRYDEENNKLILVAR 168 (321)
T ss_dssp EEEEETTSSEEEEEEE----BSSSEEEEEEETTEEE-EEESSSS---EEEEEEETTTE-EEEEEE
T ss_pred EEEccCcccchhhhee---cceEEEEEEeccccEEE-EEEcccC---EEEEEEEccCCEEEEEEe
Confidence 99988888 8888765 33335555566677555 4433322 135566776666666653
No 234
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.88 E-value=28 Score=34.35 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhh
Q 005493 610 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSY 676 (694)
Q Consensus 610 ~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (694)
++++|.+++...+.+..|+++.+.+....|+.. ++..||+.++.-++.-+++..-+-+++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~-------~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKD-------KEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444443333333 666777777777777777766665554
No 235
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=70.80 E-value=24 Score=39.00 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=13.5
Q ss_pred HHHHhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 577 ALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 577 ~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
.+-.+...++.|++.....+++++.++..+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~ 170 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQAL 170 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444
No 236
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=70.68 E-value=18 Score=39.21 Aligned_cols=108 Identities=24% Similarity=0.191 Sum_probs=66.1
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhh-hHHH---HhhHHHHHHHHHHHHHHHHHHHHHH----hhhhHhHhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKN-FSSV---LKSRQEMEKKLADSLKEMELLKEKL----AGLELAQEE 640 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~-~~~~---~~~~~~~e~~~~~~~~~~~~l~~k~----~~~~~~~e~ 640 (694)
..-|.+++...+....|+.|+..+.+..++||.+ +.-+ ++-+++|-++-...-++.+..+--+ |.+..+++.
T Consensus 94 ~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~ 173 (352)
T COG1566 94 EQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQAA 173 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4567778888888899999999999999999995 5554 3344444433222233333332222 222233333
Q ss_pred hcccccccccCCccchhhHHHHHHHHhhhhhhhhhh
Q 005493 641 ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSY 676 (694)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (694)
+..--...-++-..++-.|+-++|-++..+-+|.-|
T Consensus 174 ~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T 209 (352)
T COG1566 174 QKQNLALLESEVSGAQAQVASAEAALDQAKLDLERT 209 (352)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCC
Confidence 333333444555566677888888888888777765
No 237
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.59 E-value=26 Score=37.48 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~ 631 (694)
...++++..+-++...|.++|..+....++.++++..+-++.+++++.-....+++-.++..+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLEL 108 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666665555555444444444443333333
No 238
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=70.39 E-value=36 Score=33.31 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHH
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK 616 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~ 616 (694)
+-+|.......|++|...+++|++.+...-+..++++++
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~e 94 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQ 94 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666555543333333333
No 239
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.33 E-value=23 Score=41.94 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS 605 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~ 605 (694)
|-.+.++.++=+++..|...|..+.+.++.+...++.
T Consensus 268 qKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~ 304 (717)
T PF09730_consen 268 QKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSE 304 (717)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777778888888888888888888888877774
No 240
>smart00030 CLb CLUSTERIN Beta chain.
Probab=70.30 E-value=19 Score=35.32 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
+-++++..+|.--..+ -+..|..|+.-..+|++-++.+++++++++.....++||++.++
T Consensus 19 yvd~EI~nAl~GvKqM-------K~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~ 78 (206)
T smart00030 19 YINKEIKNALKGVKQI-------KTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQG 78 (206)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666544333 23345555666666777777777777777777777777766654
No 241
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=70.26 E-value=2.2e+02 Score=33.23 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=80.8
Q ss_pred CCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEE--ECCcEEEEEcCCCCCCCCCeEEEEEcCC
Q 005493 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (694)
Q Consensus 207 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~~lyv~GG~~~~~~~~dv~~yd~~t 284 (694)
++.++++|-.. --.+|++.++- -.++....++|..+...+... +++..+++.. ....+++.++.++
T Consensus 393 dg~~Ia~st~~-----~~~iy~L~~~~--~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~ 460 (691)
T KOG2048|consen 393 DGNLIAISTVS-----RTKIYRLQPDP--NVKVINVDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELET 460 (691)
T ss_pred CCCEEEEeecc-----ceEEEEeccCc--ceeEEEeccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEecC
Confidence 56777776321 12345544433 222222237787776555443 3444355543 2234678888888
Q ss_pred CcEEEeeccCCCCCCCcc----eEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEe
Q 005493 285 MIWTRIKIRGFHPSPRAG----CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 360 (694)
Q Consensus 285 ~~W~~l~~~~~~p~~R~~----~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~ 360 (694)
.+-..+... .|.+-.. .....+|+.|-++++.. .+++|++++.+-..+.. ..+...+++.+.
T Consensus 461 ps~kel~~~--~~~~~~~~I~~l~~SsdG~yiaa~~t~g------~I~v~nl~~~~~~~l~~------rln~~vTa~~~~ 526 (691)
T KOG2048|consen 461 PSFKELKSI--QSQAKCPSISRLVVSSDGNYIAAISTRG------QIFVYNLETLESHLLKV------RLNIDVTAAAFS 526 (691)
T ss_pred cchhhhhcc--ccccCCCcceeEEEcCCCCEEEEEeccc------eEEEEEcccceeecchh------ccCcceeeeecc
Confidence 777766543 1222111 11122477788887532 59999999988776541 122333444444
Q ss_pred ecCCcEEEEEcCCCCCCCCcEEEEECcc
Q 005493 361 HKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (694)
Q Consensus 361 ~~~~~~i~v~GG~~~~~~~~v~~~di~~ 388 (694)
+...+.+++. ...++++.||+..
T Consensus 527 ~~~~~~lvva-----ts~nQv~efdi~~ 549 (691)
T KOG2048|consen 527 PFVRNRLVVA-----TSNNQVFEFDIEA 549 (691)
T ss_pred ccccCcEEEE-----ecCCeEEEEecch
Confidence 3344445442 3345899999944
No 242
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=70.26 E-value=9 Score=41.63 Aligned_cols=28 Identities=36% Similarity=0.408 Sum_probs=22.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
-+-||-+||.|+.+.+..|+||.|-..+
T Consensus 353 ~kkrqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 353 NKKRQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhcch
Confidence 5678888888988888888888885443
No 243
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.90 E-value=25 Score=31.91 Aligned_cols=67 Identities=25% Similarity=0.233 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHH-----------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS-----------VLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~-----------~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
|....+++.++..+..+|.||..+..-+++.|+==.. |-.++.++...|. +..|.|+.++..+++-
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~---er~E~Le~ri~tLekQ 92 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELE---ERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 5666777778888888888888877777776653222 1234444444333 5556667777766654
Q ss_pred H
Q 005493 638 Q 638 (694)
Q Consensus 638 ~ 638 (694)
+
T Consensus 93 e 93 (119)
T COG1382 93 E 93 (119)
T ss_pred H
Confidence 3
No 244
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=69.81 E-value=14 Score=32.60 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 655 LEHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
|+..+.-+++.++..++++...|+.|.
T Consensus 57 l~~~i~~~~~~~~~~~~~~~~~r~~l~ 83 (123)
T PF02050_consen 57 LEQAIQQQQQELERLEQEVEQAREELQ 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 245
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.75 E-value=21 Score=40.88 Aligned_cols=66 Identities=26% Similarity=0.286 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH-----------------HhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-----------------LKSRQEMEKKLADSLKEMELLKEKLA 632 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~-----------------~~~~~~~e~~~~~~~~~~~~l~~k~~ 632 (694)
.++.++..+=.++..|+..|..-.+..|..|..|+.+ -+....|+++|.+.-+..+.||.||+
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666666665 22233444455555555555555555
Q ss_pred hhh
Q 005493 633 GLE 635 (694)
Q Consensus 633 ~~~ 635 (694)
.++
T Consensus 506 ~l~ 508 (652)
T COG2433 506 ELR 508 (652)
T ss_pred HHH
Confidence 444
No 246
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.60 E-value=36 Score=39.73 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=25.5
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005493 583 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~ 632 (694)
..|..||+...+..++++..+..+-.+..++++.+.....+.+.|++.++
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555555555555554444444443333333
No 247
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.55 E-value=43 Score=33.51 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=14.3
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
|....++.|+.|...+++|++.+...
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~~~~y 110 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAAVAAY 110 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666555544
No 248
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.32 E-value=18 Score=36.39 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=22.3
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 630 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k 630 (694)
+|++.|.++...+.+|++.+..+...+..+++++....++.+++..+
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555555555555554444444444433
No 249
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.26 E-value=34 Score=30.27 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
+..+-+-+|++.+..|+..+..-.+. ..++.+-..+++.++.++.+.++. +|+|-+++
T Consensus 27 ~~K~S~~eL~kqkd~L~~~l~~L~~q-------~~s~~qr~~eLqaki~ea~~~le~--eK~ak~~l 84 (107)
T PF09304_consen 27 DEKTSQGELAKQKDQLRNALQSLQAQ-------NASRNQRIAELQAKIDEARRNLED--EKQAKLEL 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 44455555666665544333333322 333444555667777777777776 66766553
No 250
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.25 E-value=2e+02 Score=32.39 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=75.6
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (694)
.+.+++.|+.+. .|.++|+.+.+-...-. .-.......+..-++.+++.+..+ ..+.+||+.+..
T Consensus 257 ~g~~i~Sgs~D~------tvriWd~~~~~~~~~l~---~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 257 DGNLLVSGSDDG------TVRIWDVRTGECVRKLK---GHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGS 321 (456)
T ss_pred CCCEEEEecCCC------cEEEEeccCCeEEEeee---ccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCc
Confidence 457888888652 78899998855443321 111112222222356777777543 348889988777
Q ss_pred EE--EcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CCEE
Q 005493 236 WL--PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 312 (694)
Q Consensus 236 W~--~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~~i 312 (694)
-. ..-. ....+..-..+....+. .|++-+... +.+-.||+....--..... ..-..++.+..+.. ++++
T Consensus 322 ~~~~~~~~--~~~~~~~~~~~~fsp~~-~~ll~~~~d----~~~~~w~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 322 KLCLKLLS--GAENSAPVTSVQFSPNG-KYLLSASLD----RTLKLWDLRSGKSVGTYTG-HSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred eeeeeccc--CCCCCCceeEEEECCCC-cEEEEecCC----CeEEEEEccCCcceeeecc-cCCcceeEecccccCCCCe
Confidence 43 1111 11112112223333444 344444322 2466677765432222111 00112444444434 5666
Q ss_pred EEEcCCCCCCCcCeEEEEECCC
Q 005493 313 YIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 313 yV~GG~~~~~~~~~v~~yd~~t 334 (694)
.+.|+.+. .++++|+.+
T Consensus 394 i~sg~~d~-----~v~~~~~~s 410 (456)
T KOG0266|consen 394 IYSGSEDG-----SVYVWDSSS 410 (456)
T ss_pred EEEEeCCc-----eEEEEeCCc
Confidence 66666554 488999887
No 251
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=69.01 E-value=26 Score=39.90 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHH---------------HHhhHHHHHHHHHHHHH-------HHHHHHH
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------------VLKSRQEMEKKLADSLK-------EMELLKE 629 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~---------------~~~~~~~~e~~~~~~~~-------~~~~l~~ 629 (694)
..+++++-++...++.++.++.+.+.+.++.++. +.....++|.+++.... .+..|+.
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~ 282 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKR 282 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 3455556666666666666666666666654431 22234455555555433 4456666
Q ss_pred HHhhhhHhHhhh-cc-----cccc--------cccCCccchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 630 KLAGLELAQEEA-NS-----LSNI--------VHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 630 k~~~~~~~~e~~-~~-----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
+++.++....+. ++ +.+. ....=..++.+++-|++.++..++++...++.+.
T Consensus 283 qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 283 EIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666542221 11 0111 1112234567788888888877777766555543
No 252
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=68.97 E-value=1.4e+02 Score=30.58 Aligned_cols=135 Identities=14% Similarity=0.211 Sum_probs=75.1
Q ss_pred cEEEeeec--CCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCc
Q 005493 184 CWSVVEAK--GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 260 (694)
Q Consensus 184 ~W~~~~~~--g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~ 260 (694)
-|+...|. +..+.|-...-... -.+.|+..||- ..+|..|+++++.++.- --..-|-|+.+.-+..
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCcceeeeeeecccC
Confidence 46655432 22344444433322 35788888863 34899999999988763 1234566766654333
Q ss_pred EEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCC-CC--cc--eEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC
Q 005493 261 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS-PR--AG--CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (694)
Q Consensus 261 ~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~-~R--~~--~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~ 335 (694)
-=++.|+-++. +-++|.++.+...+-..-..|. -| .+ ..+...+..++|.||... +-.+++...
T Consensus 169 ~qilsG~EDGt-----vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrss 237 (325)
T KOG0649|consen 169 GQILSGAEDGT-----VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSS 237 (325)
T ss_pred cceeecCCCcc-----EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCC
Confidence 23566665543 7889998877665532111111 12 22 255556777888888543 345555555
Q ss_pred cEEEe
Q 005493 336 EWSVA 340 (694)
Q Consensus 336 ~W~~l 340 (694)
+-+.+
T Consensus 238 e~t~v 242 (325)
T KOG0649|consen 238 ESTCV 242 (325)
T ss_pred CceEE
Confidence 44443
No 253
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=68.86 E-value=22 Score=37.84 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=60.4
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHh-----------hhcccccccc---cCCccchhhHHHHHHHHh
Q 005493 602 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE-----------EANSLSNIVH---SDNVRLEHDVAFLKAVLD 667 (694)
Q Consensus 602 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e-----------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 667 (694)
+|...-.+|++.+....-..+.++.||.+..++...-. +-.+|+.+++ -.|..|..||.-|+..|.
T Consensus 17 eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~ 96 (319)
T PF09789_consen 17 ELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLN 96 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667666655555567778777777662211 2233444443 468899999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhh
Q 005493 668 DTQKVNCSYYTQLMHEFLHDE 688 (694)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~ 688 (694)
|.|.+....|+.++.=+..++
T Consensus 97 E~qGD~KlLR~~la~~r~~~~ 117 (319)
T PF09789_consen 97 EAQGDIKLLREKLARQRVGDE 117 (319)
T ss_pred HHhchHHHHHHHHHhhhhhhc
Confidence 999999999999987665543
No 254
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.86 E-value=31 Score=36.68 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.0
Q ss_pred hhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCcc
Q 005493 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVR 654 (694)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~ 654 (694)
+..|+.-+.+.-+-..++.+|..++.+.+..+.|+.|++. |+|++.|+.++-. |+.+
T Consensus 239 Rt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~n~~~~~~-D~~~ 295 (365)
T KOG2391|consen 239 RTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAENLEALDI-DEAI 295 (365)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhccCcCCCc-hhhh
Confidence 3344445555556677888888888888999999999987 8899988666544 3443
No 255
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=68.73 E-value=34 Score=33.11 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=14.2
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
.|....+++|+.|...+++|++.+...
T Consensus 47 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 73 (173)
T PRK13460 47 ERASGVQNDINKASELRLEAEALLKDY 73 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554
No 256
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.64 E-value=34 Score=37.32 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=82.4
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHH-HHHHHHHHHhhhhHhHhhhcccccc
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK-EMELLKEKLAGLELAQEEANSLSNI 647 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~-~~~~l~~k~~~~~~~~e~~~~~~~~ 647 (694)
.+.-.-+.+..+-...++..+.++..-++-..++++..|+-.+.-|+.+..-++ -++..+...+.+..+||+++.++.-
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 566677778888888899999999999999999999999999999999887544 3466677777777778888888877
Q ss_pred cccCCccchhhHHHHHHHHhhhhhhhhh
Q 005493 648 VHSDNVRLEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (694)
|-. +-++++.+..-|+.++.|+..
T Consensus 296 V~~----~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 296 VSE----RTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 754 667888888888887777764
No 257
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.60 E-value=45 Score=36.91 Aligned_cols=111 Identities=20% Similarity=0.177 Sum_probs=52.1
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HhhhhHhHhhh---c
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK-------LAGLELAQEEA---N 642 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k-------~~~~~~~~e~~---~ 642 (694)
+++...=++...|+.||....+...+.|..+...-...++++++++++.+..+.|+.. ||....|--.+ .
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4444444455555555555555555555555555555555555555544444333322 22222221111 2
Q ss_pred ccccccccCC----ccc-------hhhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 005493 643 SLSNIVHSDN----VRL-------EHDVAFLKAVLDDTQKVNCSYYTQLMHE 683 (694)
Q Consensus 643 ~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (694)
.+-..||.+. +|+ -++.+-.+.-|..|+++|---|..++-|
T Consensus 132 ~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaae 183 (420)
T COG4942 132 PPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAE 183 (420)
T ss_pred CchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655 332 1344444444555555555555444444
No 258
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=68.26 E-value=32 Score=34.43 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=27.5
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHHHhh----HHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSVLKS----RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~~~~----~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
|....++.|+.|...+++|++.+...-+. ++++.+-+..+.++.+.+++.+ ++.|++|+..+
T Consensus 80 R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i--~~~A~~eae~i 145 (205)
T PRK06231 80 RKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSEL--EKEANRQANLI 145 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34444445555555555555544443222 3333333334444444443333 33555555543
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=67.92 E-value=1.9e+02 Score=31.55 Aligned_cols=261 Identities=11% Similarity=0.056 Sum_probs=125.2
Q ss_pred CEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccC---CCCCccEE
Q 005493 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD---SGSDRVSV 175 (694)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~---~~~~~~~v 175 (694)
..+||.-....... +.+.++|..+.+-...-+. ...| .+.+..-++.||+.-.+.. .+...+.|
T Consensus 13 ~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~---------G~~P---~~~~spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 13 RRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDG---------GFLP---NPVVASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred CEEEEECCcccccC-ceEEEEECCCCEEEEEEEc---------cCCC---ceeECCCCCEEEEEeccccccccCCCCCEE
Confidence 34777655322222 7899999988554322221 1111 1223333568888866321 23346789
Q ss_pred EEEECCCCcEEEeeecCCCCCcce-----eeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCC----
Q 005493 176 WTFDTETECWSVVEAKGDIPVARS-----GHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT---- 244 (694)
Q Consensus 176 ~~yd~~t~~W~~~~~~g~~p~~R~-----~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~---- 244 (694)
..||+.+.+-..--+.+ +.||+ .+..+. -++ .+||. -. ...+.+-++|+.+++-..--..+.
T Consensus 80 ~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~-n~----~p~~~V~VvD~~~~kvv~ei~vp~~~~v 152 (352)
T TIGR02658 80 EVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFY-QF----SPSPAVGVVDLEGKAFVRMMDVPDCYHI 152 (352)
T ss_pred EEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEe-cC----CCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 99999998765322211 22331 122222 234 56665 21 234678888988877544221111
Q ss_pred CCCCcceeEEEEECCcEEE---------------EEcC------CCC------C-----CCCCeEEEEEcCC------Cc
Q 005493 245 GPSPRSNHVAALYDDKNLL---------------IFGG------SSK------S-----KTLNDLYSLDFET------MI 286 (694)
Q Consensus 245 ~P~~R~~hs~~~~~~~~ly---------------v~GG------~~~------~-----~~~~dv~~yd~~t------~~ 286 (694)
.|.+...+.+...++..+. +|-+ ... . .+-+.|+.+|+.. ..
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecce
Confidence 1111111222222333222 2222 000 0 1225677787432 23
Q ss_pred EEEeeccCC----CCCCCcceEEEEECCEEEEEc--CC--CCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEE
Q 005493 287 WTRIKIRGF----HPSPRAGCCGVLCGTKWYIAG--GG--SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVL 358 (694)
Q Consensus 287 W~~l~~~~~----~p~~R~~~sav~~~~~iyV~G--G~--~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~ 358 (694)
|..+..... .|.+....+...-++++||.. |. +.....+.++++|+.+.+-..-. + ....-++++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i--~----vG~~~~~ia- 305 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI--E----LGHEIDSIN- 305 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE--e----CCCceeeEE-
Confidence 655543210 111111111111368899842 22 12334568999998775543321 2 233333333
Q ss_pred EeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 359 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 359 v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+...++..+|+.-+. .+++.++|..+.+
T Consensus 306 vS~Dgkp~lyvtn~~----s~~VsViD~~t~k 333 (352)
T TIGR02658 306 VSQDAKPLLYALSTG----DKTLYIFDAETGK 333 (352)
T ss_pred ECCCCCeEEEEeCCC----CCcEEEEECcCCe
Confidence 444444477766553 3468899987765
No 260
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=67.76 E-value=22 Score=37.94 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=62.9
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCcc-----
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVR----- 654 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~----- 654 (694)
.+.+.|=.||..|....++.|.++-+++.+|+|+. .|....|.|+.-+- +-|+-++-.|+-|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~-------~ERD~yk~K~~RLN------~ELn~~L~g~~~rivDID 192 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELV-------TERDAYKCKAHRLN------HELNYILNGDENRIVDID 192 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------HHHHHHhCCCCCCcccHH
Confidence 34444556777777888888888888877777654 55666777776663 2255666666666
Q ss_pred -chhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 655 -LEHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 655 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
|--|-.|||+-|...|.|..+.+.-+.
T Consensus 193 aLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 193 ALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999988776654
No 261
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=67.33 E-value=23 Score=36.94 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHhhhhhh
Q 005493 655 LEHDVAFLKAVLDDTQKV 672 (694)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~ 672 (694)
||+|+++||-.+.+-+|+
T Consensus 274 lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 274 LEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478899999888777765
No 262
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.20 E-value=47 Score=38.99 Aligned_cols=112 Identities=25% Similarity=0.201 Sum_probs=62.9
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhH----HHHHHHHH----------------------
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSR----QEMEKKLA---------------------- 618 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~----~~~e~~~~---------------------- 618 (694)
+...+....++..|-++...|++||.+-+..++.. |.+..++ .++|+++.
T Consensus 79 se~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~L----s~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t 154 (617)
T PF15070_consen 79 SEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQL----SRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKAT 154 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 44446666778888888888888888765555533 2221111 11122211
Q ss_pred --HHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhh
Q 005493 619 --DSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 619 --~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
.++.--..||+.|+.++.+=...+|-+.-+-+--....|=+.-|.+.|.+.|-+||..++.|
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223356777777776655555554433333333333445577788888888888777655
No 263
>PHA02562 46 endonuclease subunit; Provisional
Probab=67.05 E-value=45 Score=38.59 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc-----cccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 608 KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS-----LSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 608 ~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
......++.|+.+..++..++.+++..+..-+-+.. +|...|++. +..++-|+.-+++.+++++.....+.
T Consensus 248 ~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~---~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 248 MDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG---PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666666666666655443322 455566655 55566666666666665555554444
No 264
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=66.94 E-value=14 Score=41.24 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=16.0
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 596 REAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 596 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
.++.||+|+.+-++.++|.+++++..+..++|+..++.+
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344455555553333333344444333333444433333
No 265
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=66.92 E-value=41 Score=31.26 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhH---hhhccccc
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ---EEANSLSN 646 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~---e~~~~~~~ 646 (694)
..+.-...++...+.++-.+.-+....+.-++....--..+++++...+.+-++++.||..|..+.... +|++.|..
T Consensus 43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~ 122 (139)
T PF05615_consen 43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAK 122 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777777777777777788888888899999999999999999999988765433 78888887
Q ss_pred ccccCC
Q 005493 647 IVHSDN 652 (694)
Q Consensus 647 ~~~~~~ 652 (694)
.|.+-.
T Consensus 123 ~I~~~p 128 (139)
T PF05615_consen 123 KINSQP 128 (139)
T ss_pred HHhcCC
Confidence 777655
No 266
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.88 E-value=55 Score=32.70 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
.|++.++.+|..|-..|..-.+..|+....+..+=.++-++|+++....-++..||.|...+|-
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 4566666666666555555555555555555555555666677777777788888888877764
No 267
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.79 E-value=25 Score=40.10 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccc---cccCCccchhhHHHHHHHHhhhhhhhhhhh
Q 005493 610 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI---VHSDNVRLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 610 ~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
++++..+++.+..+.+.|+.+++.+....++....-.. .-.+-.+|++|+...+...+...+.+..++
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677666666666666666655443333322111 122335788999888888888887776655
No 268
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=66.79 E-value=36 Score=36.66 Aligned_cols=90 Identities=22% Similarity=0.169 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHH-HH-HHHHHHHHHhhhhHhHhhhcccccc
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADS-LK-EMELLKEKLAGLELAQEEANSLSNI 647 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~-~~-~~~~l~~k~~~~~~~~e~~~~~~~~ 647 (694)
..-..|...-|+|+-|+.|-..+...+.+..+-+..|.|+-|.-|.||+.. .+ ..-.|+|| |
T Consensus 289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK-a--------------- 352 (442)
T PF06637_consen 289 SLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK-A--------------- 352 (442)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------
Confidence 344456666677777766644444443333333333333333444444321 11 11223333 2
Q ss_pred cccCCccchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 648 VHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
.|..|.+-|.--|++.++|+...+.+++
T Consensus 353 ------aLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 353 ------ALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555566678888888888887775
No 269
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=66.46 E-value=31 Score=36.99 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=50.8
Q ss_pred HHhhHHHHhhhhHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHH
Q 005493 592 ALVNREAAEKNFSSVLKSRQEMEKKLADSLK-------EMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 664 (694)
Q Consensus 592 ~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~-------~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
+..+.|-.||=+.-|.|.|++-|+-|+++.+ +||..=|+-...| |.-+-|||-
T Consensus 179 ~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE--------------------~~Rl~Ffke 238 (472)
T KOG2856|consen 179 LKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFE--------------------EKRLQFFKE 238 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH
Confidence 4445555666677777777777777777544 5666655555554 345789999
Q ss_pred HHhhhhhhhhhhhhhhhhh
Q 005493 665 VLDDTQKVNCSYYTQLMHE 683 (694)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~ 683 (694)
||-++|+-|..+|-.-+.+
T Consensus 239 il~~v~~hldl~~~~~~~~ 257 (472)
T KOG2856|consen 239 ILLKVQRHLDLSRNSSYSG 257 (472)
T ss_pred HHHHHHHHhhhhhhcchHH
Confidence 9999999998888665544
No 270
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=66.34 E-value=39 Score=32.17 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=13.9
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
+|.....+.|+.|...+++|++.+...
T Consensus 36 ~R~~~I~~~l~~A~~~~~eA~~~~~e~ 62 (159)
T PRK13461 36 SRQSEIDNKIEKADEDQKKARELKLKN 62 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444
No 271
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.28 E-value=31 Score=35.79 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=32.7
Q ss_pred HhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhh
Q 005493 593 LVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 668 (694)
Q Consensus 593 ~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (694)
.+.++.+++.+...+++..+.|++++++...+...+.+|+.+|. +-.||+.-+.|+|-..+.
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~--------------~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEM--------------ESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555556555556666666665553 223555556666655443
No 272
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.95 E-value=1.9e+02 Score=30.73 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=73.6
Q ss_pred CcCcEEEEECCCCc----EEEcccccccCCCCCCCCCCCccceE---EEE---ECCEEEEEccccCCCCCccEEEEEECC
Q 005493 112 LLDDVQVLNFDRFS----WTAASSKLYLSPSSLPLKIPACRGHS---LIS---WGKKVLLVGGKTDSGSDRVSVWTFDTE 181 (694)
Q Consensus 112 ~~~~v~~yd~~t~~----W~~~~~~~~~~p~~~~~~~p~r~~~s---~v~---~~~~Iyv~GG~~~~~~~~~~v~~yd~~ 181 (694)
.++.+..||..+++ |+.--. -+ ....+ =.. +++.||+.-+- +...--||..|..
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih------------~~-~~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~ 139 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIH------------DK-TKWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRR 139 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccC------------Cc-cccccchhheeeCCCcCEEEEEecC---CcceeeeEEEccc
Confidence 46678999998875 554322 11 11111 112 25777776432 2223369999999
Q ss_pred CCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcE--EEcccC----CCCCCCcceeEEE
Q 005493 182 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--LPLHCT----GTGPSPRSNHVAA 255 (694)
Q Consensus 182 t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W--~~l~~~----g~~P~~R~~hs~~ 255 (694)
++.-+.+.. -|... .+.+.+..+|-+ ..-..-.+.+.+||+.+++| ...... |.....|..-.++
T Consensus 140 ~g~~~~L~~---~ps~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~ 210 (339)
T PF09910_consen 140 TGKAEKLSS---NPSLK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMA 210 (339)
T ss_pred CCceeeccC---CCCcC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEE
Confidence 998887762 34332 233334333322 22223467899999999999 433221 1112223333455
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEEcC
Q 005493 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFE 283 (694)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~dv~~yd~~ 283 (694)
...++.+..++|- +.+.||.
T Consensus 211 s~ynR~faF~rGG--------i~vgnP~ 230 (339)
T PF09910_consen 211 SAYNRLFAFVRGG--------IFVGNPY 230 (339)
T ss_pred EEeeeEEEEEecc--------EEEeCCC
Confidence 6666633334442 5556654
No 273
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.86 E-value=28 Score=42.51 Aligned_cols=106 Identities=20% Similarity=0.161 Sum_probs=64.0
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccc
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 647 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~ 647 (694)
.++-+.++..+=.+--.|+.|+..|-..++..++.++-+-+.+.+.++++.....||..|+-- | |..|.+.-.+ |-
T Consensus 663 ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~-~--e~~~~~~~~~-~~ 738 (1074)
T KOG0250|consen 663 IEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT-A--EEKQVDISKL-ED 738 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h--hhhhcchhhh-HH
Confidence 344445544444444456666666666666666666666666667777766666666666653 1 2222222111 22
Q ss_pred cccCCccchhhHHHHHHHHhhhhhhhhhhh
Q 005493 648 VHSDNVRLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
-+.++...+++++-.-|-++++|.|++.++
T Consensus 739 l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~ 768 (1074)
T KOG0250|consen 739 LAREIKKKEKEIEEKEAPLEKLKEELEHIE 768 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888888888999999888765
No 274
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=65.58 E-value=1.7e+02 Score=30.26 Aligned_cols=267 Identities=17% Similarity=0.194 Sum_probs=114.4
Q ss_pred EEECCEEEE--EcCCC-CCCCcCcEEEEECCC-CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccc-CCC
Q 005493 95 AVIGNKMIV--VGGES-GNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT-DSG 169 (694)
Q Consensus 95 ~~~~~~lyv--~GG~~-~~~~~~~v~~yd~~t-~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~-~~~ 169 (694)
.++++.||. ++|.. +-..+.-.|+=+... ++|+...-.....|. -|.-.-..+++.+.++++|++=-.. -..
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~---yptvnyHCmSMGv~~NRLfa~iEtR~~a~ 98 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPD---YPTVNYHCMSMGVVGNRLFAVIETRTVAS 98 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TT---TTTEEEE-B-EEEETTEEEEEEEEEETTT
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCC---CCccceeeeeeeeecceeeEEEeehhhhh
Confidence 455666663 34432 222233345555544 588764432111111 1111223456788899999873221 112
Q ss_pred CCccEEEEEE---CCCCcEEEeeecCCCCC-------cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcE---
Q 005493 170 SDRVSVWTFD---TETECWSVVEAKGDIPV-------ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--- 236 (694)
Q Consensus 170 ~~~~~v~~yd---~~t~~W~~~~~~g~~p~-------~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W--- 236 (694)
......+.|+ ...+.|+.-... .+|. .-.-|+-+.+++.-|.+|=.+++-. ...+-.+-. ++.|
T Consensus 99 ~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s-PRe~G~~yf-s~~~~sp 175 (367)
T PF12217_consen 99 NKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS-PRELGFLYF-SDAFASP 175 (367)
T ss_dssp --EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSS-S-EEEEEEE-TTTTT-T
T ss_pred hhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCC-cceeeEEEe-cccccCC
Confidence 2233344444 567889865432 1333 3456777888888888886655421 122222111 1111
Q ss_pred -----EEcccCCCCCCCcceeEEEEECCcEEEEE-cCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECC
Q 005493 237 -----LPLHCTGTGPSPRSNHVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310 (694)
Q Consensus 237 -----~~l~~~g~~P~~R~~hs~~~~~~~~lyv~-GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~ 310 (694)
+.+.. .....-...++-.+++. +|+. -|......-..+.+-+.....|+.+.... ..-....--+.+++
T Consensus 176 ~~~vrr~i~s--ey~~~AsEPCvkyY~g~-LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~--nvHhtnlPFakvgD 250 (367)
T PF12217_consen 176 GVFVRRIIPS--EYERNASEPCVKYYDGV-LYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPN--NVHHTNLPFAKVGD 250 (367)
T ss_dssp T--EEEE--G--GG-TTEEEEEEEEETTE-EEEEEEES-TTS---EEEEESSTTSS-EEEE-TT-----SS---EEEETT
T ss_pred cceeeeechh--hhccccccchhhhhCCE-EEEEEcCcCCCCCcceeeeecccCCchhhccccc--cccccCCCceeeCC
Confidence 22211 22223334566677777 6654 45544445567888888899999997631 22233334466799
Q ss_pred EEEEEcCCCCC-------------CCcCeEEEEE-------CCCCcEEEeec--CCCCCCCCCcCcEEEEEeecCCcEEE
Q 005493 311 KWYIAGGGSRK-------------KRHAETLIFD-------ILKGEWSVAIT--SPSSSVTSNKGFTLVLVQHKEKDFLV 368 (694)
Q Consensus 311 ~iyV~GG~~~~-------------~~~~~v~~yd-------~~t~~W~~l~~--~~~~~p~~r~~~s~~~v~~~~~~~i~ 368 (694)
.||+||-.... .....++... ++.-+|..+.. ..+.......+.+++++. ++--.|
T Consensus 251 ~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~K--D~~lyy 328 (367)
T PF12217_consen 251 VLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVK--DGWLYY 328 (367)
T ss_dssp EEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEE--TTEEEE
T ss_pred EEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEE--CCEEEE
Confidence 99999953210 1122334333 33445555432 122233344556666554 444567
Q ss_pred EEcCCC
Q 005493 369 AFGGIK 374 (694)
Q Consensus 369 v~GG~~ 374 (694)
+|||.+
T Consensus 329 ~FGgED 334 (367)
T PF12217_consen 329 IFGGED 334 (367)
T ss_dssp EEEEB-
T ss_pred EecCcc
Confidence 899974
No 275
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.41 E-value=32 Score=42.04 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=53.2
Q ss_pred hhHHHHHHHhhHHHHhhhhH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh-HhhhcccccccccCCccch
Q 005493 585 LEGQLAAALVNREAAEKNFS-------SVLKSRQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSDNVRLE 656 (694)
Q Consensus 585 l~~~l~~~~~~~~~~e~~~~-------~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~-~e~~~~~~~~~~~~~~~~~ 656 (694)
|+++|++....+......+- -+-+.+++++++|+...++++-+++++..+... .|+---++++=-++...-.
T Consensus 453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~ 532 (1041)
T KOG0243|consen 453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVD 532 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444443333 557788889999999999999999998888765 3333333333333333322
Q ss_pred hhHHHHHHHHhhhhhhhhhhhh
Q 005493 657 HDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
.++. |-.-++..|+++++.-+
T Consensus 533 ~a~~-l~~~~~~s~~d~s~l~~ 553 (1041)
T KOG0243|consen 533 RATK-LRRSLEESQDDLSSLFE 553 (1041)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH
Confidence 3222 33345666666655433
No 276
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.41 E-value=52 Score=37.23 Aligned_cols=99 Identities=21% Similarity=0.246 Sum_probs=55.9
Q ss_pred HHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH-------HHHHHHHHHHHH----------hhhhHhH
Q 005493 576 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-------SLKEMELLKEKL----------AGLELAQ 638 (694)
Q Consensus 576 ~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~-------~~~~~~~l~~k~----------~~~~~~~ 638 (694)
.-+-++-++|...|+.++..+-||-.-==.+|++|..++.+++. +-.|++.+|+-+ |.-.+.+
T Consensus 11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~ 90 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEER 90 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 33444555666666665555444333333355666655555554 444555555543 3334444
Q ss_pred hhhcc----------cccccccCCccchhhHHHHHHHHhhhhhhhhhhhhh
Q 005493 639 EEANS----------LSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQ 679 (694)
Q Consensus 639 e~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (694)
||+.= +-.| +-||.|+.-|.++|..+|.|+.+.-.+
T Consensus 91 EesLLqESaakE~~yl~kI-----~eleneLKq~r~el~~~q~E~erl~~~ 136 (772)
T KOG0999|consen 91 EESLLQESAAKEEYYLQKI-----LELENELKQLRQELTNVQEENERLEKV 136 (772)
T ss_pred HHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 1112 357899999999999999998775443
No 277
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=65.30 E-value=61 Score=30.57 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=21.7
Q ss_pred HHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH
Q 005493 579 IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 619 (694)
Q Consensus 579 ~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~ 619 (694)
=+|.....++|+.|...+++|++.+...-+...+++++.+.
T Consensus 34 ~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~ 74 (156)
T PRK05759 34 EERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAE 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666665554444444444333
No 278
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=65.25 E-value=60 Score=37.42 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=41.6
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHH
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKE 623 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~ 623 (694)
-+.++..+-++-..++.||..|-+.+-+|.+.|..+=+--+++..||..+..+
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~ 84 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAE 84 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667778889999999999999999999888888888888765543
No 279
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.96 E-value=31 Score=38.57 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhH-hhhcccccccccC
Q 005493 612 EMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 651 (694)
Q Consensus 612 ~~e~~~~~~~~~~~~l~~k~~~~~~~~-e~~~~~~~~~~~~ 651 (694)
++.++...+.+++..|++++..+|.+. +....|-|++|.|
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 333344444445555555555555443 4467799999953
No 280
>PF14992 TMCO5: TMCO5 family
Probab=64.59 E-value=24 Score=36.72 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhh----HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNF----SSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~----~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
++.|.+.+-|-+++++|..-..+-......-|++. ..+-.+-|+.+.+++.+++++..++.+++.++
T Consensus 66 ~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve 136 (280)
T PF14992_consen 66 QELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVE 136 (280)
T ss_pred HHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666443333333322222221 12234445555666666666666666666554
No 281
>smart00284 OLF Olfactomedin-like domains.
Probab=64.17 E-value=1.8e+02 Score=30.09 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=77.3
Q ss_pred ccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcc---------eee---EEEEECCeEEEEc
Q 005493 147 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR---------SGH---TVVRASSVLILFG 214 (694)
Q Consensus 147 r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R---------~~~---~~~~~~~~lyv~G 214 (694)
-.|.+.+++++.+|.--. ....+.+||+.+.+-..... +|.+. .++ -.++..+-|+|+=
T Consensus 74 ~~GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~~~~~---Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIY 144 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQKEPL---LNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIY 144 (255)
T ss_pred cccccEEEECceEEEEec------CCccEEEEECCCCcEEEEEe---cCccccccccccccCCCccEEEEEcCCceEEEE
Confidence 457778999999998633 23589999999988653331 33221 111 1233345566663
Q ss_pred cccCCCccccceEEeeCCCC----cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEe
Q 005493 215 GEDGKRRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (694)
Q Consensus 215 G~~~~~~~~~~v~~yd~~t~----~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l 290 (694)
....+.. .=.+-.+|+.+- +|.. ..|.+..+-+..++ +. ||+.-.. ......-.+.||+.+++=..+
T Consensus 145 at~~~~g-~ivvSkLnp~tL~ve~tW~T-----~~~k~sa~naFmvC-Gv-LY~~~s~-~~~~~~I~yayDt~t~~~~~~ 215 (255)
T smart00284 145 ATEQNAG-KIVISKLNPATLTIENTWIT-----TYNKRSASNAFMIC-GI-LYVTRSL-GSKGEKVFYAYDTNTGKEGHL 215 (255)
T ss_pred eccCCCC-CEEEEeeCcccceEEEEEEc-----CCCcccccccEEEe-eE-EEEEccC-CCCCcEEEEEEECCCCcccee
Confidence 3322210 112345666554 4653 23444444333333 44 7777421 111223368999988764433
Q ss_pred eccCCCCCCCcceEEEEE---CCEEEEEc
Q 005493 291 KIRGFHPSPRAGCCGVLC---GTKWYIAG 316 (694)
Q Consensus 291 ~~~~~~p~~R~~~sav~~---~~~iyV~G 316 (694)
... .+.+...++++-. +.+||+.-
T Consensus 216 ~i~--f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 216 DIP--FENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred eee--eccccccceeceeCCCCCeEEEEe
Confidence 221 2223333444444 56788765
No 282
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=64.13 E-value=1.2e+02 Score=29.78 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=45.5
Q ss_pred cCCCccccceEEeeCCCCcEEEcccCCCC---CCCcceeEEEEECCcEEEEEcCCCC-CCCCCeEEEEEcCCCcEEEeec
Q 005493 217 DGKRRKLNDLHMFDLKSLTWLPLHCTGTG---PSPRSNHVAALYDDKNLLIFGGSSK-SKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 217 ~~~~~~~~~v~~yd~~t~~W~~l~~~g~~---P~~R~~hs~~~~~~~~lyv~GG~~~-~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
++......++|++|..++.|..+... +. -.|. .....-+...++|+|...+ -.--..+|+|++.++.-+.+..
T Consensus 81 ~a~eEgiGkIYIkn~~~~~~~~L~i~-~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 81 EAEEEGIGKIYIKNLNNNNWWSLQID-QNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ccccccceeEEEEecCCCceEEEEec-CcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 33334578899999999888766421 22 1233 2333334455666764321 1223579999999999888876
Q ss_pred c
Q 005493 293 R 293 (694)
Q Consensus 293 ~ 293 (694)
.
T Consensus 158 ~ 158 (200)
T PF15525_consen 158 W 158 (200)
T ss_pred c
Confidence 4
No 283
>PLN02678 seryl-tRNA synthetase
Probab=63.92 E-value=33 Score=38.59 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=32.0
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHHHh---hHHHHHHHHHHHHHHHHHHHHHHhhhhHhH-hhhcccccccccC
Q 005493 583 GILEGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 651 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~~~---~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~-e~~~~~~~~~~~~ 651 (694)
..|..+++...+.+-+.-|+....-+ ..+++.++...+.+++..|+.++..++.+- +...+|-|++|.|
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~ 115 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDS 115 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 33444444444444444444433211 222233333333344444444444443332 4467899999974
No 284
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.75 E-value=49 Score=42.92 Aligned_cols=7 Identities=29% Similarity=0.396 Sum_probs=3.5
Q ss_pred hhccccc
Q 005493 640 EANSLSN 646 (694)
Q Consensus 640 ~~~~~~~ 646 (694)
.++.+|.
T Consensus 425 ~~~~~~~ 431 (1486)
T PRK04863 425 RAKQLCG 431 (1486)
T ss_pred HHHHHhC
Confidence 4444555
No 285
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.62 E-value=48 Score=34.51 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
..+..+..+-.+.+.|+.++.--.+.+|.++|.|.++
T Consensus 180 ~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 180 QTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666666666666665
No 286
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=63.52 E-value=50 Score=31.97 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=21.7
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA 618 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~ 618 (694)
.|....+..|+.|...+++|++.+...-+..++++++-+
T Consensus 50 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~ 88 (174)
T PRK07352 50 ERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAE 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666677666666665333333333333
No 287
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=63.39 E-value=30 Score=38.24 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=21.2
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
.++..++..-....+.|+++..+=++...++..|..+-.+..+++.+++++
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 333444444444444444444443344444444444444444444444443
No 288
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=63.38 E-value=1.6e+02 Score=32.27 Aligned_cols=137 Identities=9% Similarity=0.041 Sum_probs=70.8
Q ss_pred CCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEccc--CCCCCCCc--ceeEEEEE
Q 005493 182 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC--TGTGPSPR--SNHVAALY 257 (694)
Q Consensus 182 t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~--~g~~P~~R--~~hs~~~~ 257 (694)
.+.|+.+. . ...+ .--++.++|++|++. ....++.++.+- .-.++.+ .+.+..++ ...-.+..
T Consensus 189 ~~~Wt~l~---~-~~~~-~~DIi~~kGkfYAvD-------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALK---Q-MGYH-FSDIIVHKGQTYALD-------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEcc---C-CCce-eeEEEEECCEEEEEc-------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 38999886 2 2333 345778899999982 234577776421 1122211 01111111 12235556
Q ss_pred CCcEEEEEcCCCCC--------------CCCCeEEEEEcCCCcEEEeeccCCCCC--C-CcceEEEE------ECCEEEE
Q 005493 258 DDKNLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPS--P-RAGCCGVL------CGTKWYI 314 (694)
Q Consensus 258 ~~~~lyv~GG~~~~--------------~~~~dv~~yd~~t~~W~~l~~~~~~p~--~-R~~~sav~------~~~~iyV 314 (694)
.++ ++++...... ...-.||+.|.+...|.++...+.... + ....++.+ .+|+||+
T Consensus 256 ~Gd-LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYF 334 (373)
T PLN03215 256 CGE-LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYF 334 (373)
T ss_pred CCE-EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEE
Confidence 667 6666553110 011256777888999999987643100 0 11111111 1567777
Q ss_pred EcCCCCCCCcCeEEEEECCCCcEEE
Q 005493 315 AGGGSRKKRHAETLIFDILKGEWSV 339 (694)
Q Consensus 315 ~GG~~~~~~~~~v~~yd~~t~~W~~ 339 (694)
.... ...+||+...+-..
T Consensus 335 tdd~-------~~~v~~~~dg~~~~ 352 (373)
T PLN03215 335 TEDT-------MPKVFKLDNGNGSS 352 (373)
T ss_pred ECCC-------cceEEECCCCCccc
Confidence 7442 34588877766433
No 289
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=63.06 E-value=31 Score=28.17 Aligned_cols=54 Identities=33% Similarity=0.328 Sum_probs=42.6
Q ss_pred hchhhHHHHHHHhhHHHHhhhhHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 582 NGILEGQLAAALVNREAAEKNFSSV-----LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 582 ~~~l~~~l~~~~~~~~~~e~~~~~~-----~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
-..|+.+|.--++-++.|||=+... .+...+++.+|.+.....++|+..|....
T Consensus 11 l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 11 LERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888877654 35677999999999999999999887654
No 290
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.00 E-value=20 Score=38.06 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=14.0
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhh
Q 005493 571 YESKMAALIRKNGILEGQLAAALVN 595 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~ 595 (694)
|=.++..|-+.|..|+.+|......
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4455666667777777777764444
No 291
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=62.77 E-value=36 Score=40.36 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA-----------------DSLKEMELLKEKL 631 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~-----------------~~~~~~~~l~~k~ 631 (694)
.+--++...+..+.+.+.++|...+...++++..+....+++..+++++. .+.++...|+.++
T Consensus 171 ~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 171 DLALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 35667788888899999999999999999999988887777777777643 1222334444445
Q ss_pred hhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 632 AGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 632 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
++++.+..+. -.+.+.+-.++.=...++..++++|.+.++.|.
T Consensus 251 ~~l~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 251 EELKAELKEL-------NDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333222 233344455566666666666777777776665
No 292
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=62.75 E-value=36 Score=34.41 Aligned_cols=71 Identities=24% Similarity=0.217 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhchhhHHHHHH-------HhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhc
Q 005493 572 ESKMAALIRKNGILEGQLAAA-------LVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 642 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~ 642 (694)
.-.+++|.-.--||.-||-|- .+++++|..=...+....+|+.||-..+.=.+.=||.|||.+-..--|-|
T Consensus 15 rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn 92 (277)
T PF15030_consen 15 RLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERN 92 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHH
Confidence 344455555555565555441 12223332222222222333344444444444555666655544333333
No 293
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=62.51 E-value=53 Score=30.37 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=14.5
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
+|....+++|+.|...+++|++.+...
T Consensus 36 ~R~~~I~~~l~~Ae~~~~ea~~~~~~~ 62 (140)
T PRK07353 36 EREDYIRTNRAEAKERLAEAEKLEAQY 62 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 294
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.48 E-value=85 Score=37.67 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=11.4
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHh
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAE 600 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e 600 (694)
.++..+.++...|-++.++.+..+|-+|
T Consensus 431 ek~t~l~~~h~~lL~K~~di~kQle~~~ 458 (980)
T KOG0980|consen 431 EKYTELRQEHADLLRKYDDIQKQLESAE 458 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333333
No 295
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=62.38 E-value=54 Score=31.75 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=13.2
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
+|.....++|+.|...+++|++.+...
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEEN 75 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444443
No 296
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=62.21 E-value=22 Score=30.52 Aligned_cols=47 Identities=28% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHHhhHHHHhhhhHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 589 LAAALVNREAAEKNFSSVL-------KSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 589 l~~~~~~~~~~e~~~~~~~-------~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
|++|++.+++|=.+|+..+ ....++|+.++....+...|.++|-..+
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ 59 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAE 59 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHH
Confidence 4555555555555555554 4445555555555555555555555544
No 297
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=62.18 E-value=31 Score=37.30 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHH
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA 618 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~ 618 (694)
+...|.+++.+-+++++.|.+..++|+.++..+....+.++..+.
T Consensus 139 R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~~ 183 (346)
T PRK10476 139 RLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAVG 183 (346)
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567777777777777777777777776666444444444433
No 298
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=62.16 E-value=54 Score=32.10 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=12.3
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
|.....+.|+.|...+++|++.+...
T Consensus 56 R~~~I~~~l~~Ae~~~~eA~~~~~e~ 81 (184)
T CHL00019 56 RKQTILNTIRNSEERREEAIEKLEKA 81 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555444444
No 299
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=62.12 E-value=2.4e+02 Score=30.82 Aligned_cols=253 Identities=17% Similarity=0.140 Sum_probs=118.1
Q ss_pred eEEEEE---CCEEEEEcCCCCCCCcCcEEEEECCCCcEE-EcccccccCCCCCCCCCCCccceE-EEEECCEEEEEcccc
Q 005493 92 HAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHS-LISWGKKVLLVGGKT 166 (694)
Q Consensus 92 hs~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~p~~~~~~~p~r~~~s-~v~~~~~Iyv~GG~~ 166 (694)
|....+ +.++|+.+. + ..+-++|+.+.+=- .+.. .....+ ++..+++.++.+.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~v~~i~~--------------G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKVVATIKV--------------GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSEEEEEE---------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred eeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccEEEEEec--------------CCCcceEEEcCCCCEEEEEecC
Confidence 554443 567999863 2 36889999997632 2222 111122 233355444444432
Q ss_pred CCCCCccEEEEEECCCCcEEEeeecCCC----CCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccC
Q 005493 167 DSGSDRVSVWTFDTETECWSVVEAKGDI----PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (694)
Q Consensus 167 ~~~~~~~~v~~yd~~t~~W~~~~~~g~~----p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~ 242 (694)
.+.+..+|..+.+-...-+.+.+ +.+|.....+...+..|++-=.+ ...+|..|.....-....
T Consensus 99 -----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~-- 166 (369)
T PF02239_consen 99 -----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVT-- 166 (369)
T ss_dssp -----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEE--
T ss_pred -----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEecccccccee--
Confidence 24899999988664332222222 34555444444455656663322 456888887654322222
Q ss_pred CCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CCEEEEEcCCCCC
Q 005493 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 321 (694)
Q Consensus 243 g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~~iyV~GG~~~~ 321 (694)
.++.+++-|-...-.+.+.|+.+ ... .+.+-++|.+++.-..+...+..|.+..+...... .+.++..+|....
T Consensus 167 -~i~~g~~~~D~~~dpdgry~~va-~~~---sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 167 -TIKVGRFPHDGGFDPDGRYFLVA-ANG---SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp -EEE--TTEEEEEE-TTSSEEEEE-EGG---GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred -eecccccccccccCcccceeeec-ccc---cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 23455666666665554233333 221 35789999988876655444444444333333222 2345555553321
Q ss_pred CCcCeEEEEEC----CCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 322 KRHAETLIFDI----LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 322 ~~~~~v~~yd~----~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
. -...--|+ ....|+.+...+. ...+ ..+-.+++..++|+-=-.+ ...+.|.++|..+.+
T Consensus 242 ~--~~~ig~~~v~v~d~~~wkvv~~I~~----~G~g--lFi~thP~s~~vwvd~~~~-~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 242 A--IPLIGTDPVSVHDDYAWKVVKTIPT----QGGG--LFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKTLK 305 (369)
T ss_dssp E--EEEEE--TTT-STTTBTSEEEEEE-----SSSS----EE--TT-SEEEEE-TT--SSHT-EEEEECCGTE
T ss_pred e--cccccCCccccchhhcCeEEEEEEC----CCCc--ceeecCCCCccEEeeccCC-CCCceEEEEECcCcc
Confidence 0 01122222 3356877764432 2222 3344567777888741111 116689999988765
No 300
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.09 E-value=2.2e+02 Score=30.23 Aligned_cols=126 Identities=16% Similarity=0.214 Sum_probs=68.9
Q ss_pred eEEEEECCEEEEEccccCC-C---------------CCccEEEEEECCCCcEEEeeecC-CCCCcceeeEE-EEE---CC
Q 005493 150 HSLISWGKKVLLVGGKTDS-G---------------SDRVSVWTFDTETECWSVVEAKG-DIPVARSGHTV-VRA---SS 208 (694)
Q Consensus 150 ~s~v~~~~~Iyv~GG~~~~-~---------------~~~~~v~~yd~~t~~W~~~~~~g-~~p~~R~~~~~-~~~---~~ 208 (694)
|.++..-+..+.|||+--. . ...+.|..||.++++-+.+-..+ .-+..-++-.+ ..+ ++
T Consensus 39 YNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D 118 (339)
T PF09910_consen 39 YNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYED 118 (339)
T ss_pred ceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcC
Confidence 5566554555567886421 0 11346999999988744443211 11222222221 122 46
Q ss_pred eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcE
Q 005493 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (694)
Q Consensus 209 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W 287 (694)
.|++.-+-.. .---+|..|..++.-+.+. .-|.+. .+ .+.+..++-+ .....-.+.+.+||+.+++|
T Consensus 119 ~LLlAR~DGh---~nLGvy~ldr~~g~~~~L~---~~ps~K---G~-~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 119 RLLLARADGH---ANLGVYSLDRRTGKAEKLS---SNPSLK---GT-LVHDYACFGI--NNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred EEEEEecCCc---ceeeeEEEcccCCceeecc---CCCCcC---ce-EeeeeEEEec--cccccCCceEEEEEccCCeE
Confidence 7887644322 2345899999999888886 334331 22 2223212322 22233457799999999999
No 301
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=62.05 E-value=33 Score=37.34 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.1
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHH
Q 005493 583 GILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
.-+++||..+...+++||+.|...
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~f 196 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKY 196 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888777664
No 302
>PRK11281 hypothetical protein; Provisional
Probab=61.96 E-value=25 Score=44.02 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=47.5
Q ss_pred HHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHH
Q 005493 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (694)
Q Consensus 587 ~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
+-|..|+..++++++.++.+ ++++++++.+-++.+.+..+++.+..+.+... ..+.-...--.||..++-+.+-|
T Consensus 63 ~~l~~tL~~L~qi~~~~~~~----~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~-~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 63 QDLEQTLALLDKIDRQKEET----EQLKQQLAQAPAKLRQAQAELEALKDDNDEET-RETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHhhccccccc-cccccccCHHHHHHHHHHHHHHH
Confidence 34455566666666655443 44556666666666666555554332111110 01110000122777777777777
Q ss_pred hhhhhhhhhhhhhhhh
Q 005493 667 DDTQKVNCSYYTQLMH 682 (694)
Q Consensus 667 ~~~~~~~~~~~~~~~~ 682 (694)
.+.|++|...-.+|++
T Consensus 138 q~~Q~~La~~NsqLi~ 153 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVS 153 (1113)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777666654
No 303
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.92 E-value=30 Score=44.13 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=11.7
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
++-+.++.+|..+....+++||.|...
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~ 633 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQI 633 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 304
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=61.92 E-value=2.2e+02 Score=30.14 Aligned_cols=240 Identities=11% Similarity=0.052 Sum_probs=104.6
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECC-CCcEEEcccccccCCCCCCCCCCCccceEEEEECC-EEEEEccccCCCCCccEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSGSDRVSV 175 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~-~Iyv~GG~~~~~~~~~~v 175 (694)
++.||+.+. . .+.+..|+.. ++.+..+... +.+..-.+.+..-++ .+|+.. +. .+.+
T Consensus 46 ~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~----------~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v 104 (330)
T PRK11028 46 KRHLYVGVR-P----EFRVLSYRIADDGALTFAAES----------PLPGSPTHISTDHQGRFLFSAS-YN-----ANCV 104 (330)
T ss_pred CCEEEEEEC-C----CCcEEEEEECCCCceEEeeee----------cCCCCceEEEECCCCCEEEEEE-cC-----CCeE
Confidence 455777543 2 2567777775 4566655431 111111232233234 566553 21 2467
Q ss_pred EEEECCCCc--EEEeeecCCCCCcceeeEEEEE-CC-eEEEEccccCCCccccceEEeeCCCCc-EEEcc-cCCCCCCCc
Q 005493 176 WTFDTETEC--WSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLH-CTGTGPSPR 249 (694)
Q Consensus 176 ~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~l~-~~g~~P~~R 249 (694)
..|++.++. ...+. ..+.....|.++.. ++ .+|+.. . ..+.+.+||+.+.. ..... ..-..|.+.
T Consensus 105 ~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~-~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~ 175 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPC-L-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGA 175 (330)
T ss_pred EEEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEee-C-----CCCEEEEEEECCCCcccccCCCceecCCCC
Confidence 777775321 12222 12222334555444 33 555543 2 23568999987632 21100 000111111
Q ss_pred ceeEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcC--CCcEEEeeccCCCC----CCCcceEEEEE--CCEEEEEcCCCC
Q 005493 250 SNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHP----SPRAGCCGVLC--GTKWYIAGGGSR 320 (694)
Q Consensus 250 ~~hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~--t~~W~~l~~~~~~p----~~R~~~sav~~--~~~iyV~GG~~~ 320 (694)
.-+.++... ++++|+.-.. .+.+.+||+. +++++.+......| .+|....++.. +..+|+....
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-- 248 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-- 248 (330)
T ss_pred CCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--
Confidence 111234433 4567776332 3567777775 44554433222112 23332222222 3456775322
Q ss_pred CCCcCeEEEEEC--CCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECc
Q 005493 321 KKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (694)
Q Consensus 321 ~~~~~~v~~yd~--~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~ 387 (694)
.+.+.+|++ ....++.+...+.. ..++ ...+. ++..+||+.+.. .+.+.+|.++
T Consensus 249 ---~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~----~~~~~-~dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 249 ---ASLISVFSVSEDGSVLSFEGHQPTE-TQPR----GFNID-HSGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred ---CCeEEEEEEeCCCCeEEEeEEEecc-ccCC----ceEEC-CCCCEEEEEEcc----CCcEEEEEEc
Confidence 124666665 44455544432221 1111 12333 234577765432 2467777654
No 305
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=61.78 E-value=64 Score=30.80 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHh-hchhhHHHHHHHhhHHHHhhhhHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHhhh-hHhH
Q 005493 569 QFYESKMAALIRK-NGILEGQLAAALVNREAAEKNFSSV--------LKSRQEMEKKLADSLKEMELLKEKLAGL-ELAQ 638 (694)
Q Consensus 569 ~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~e~~~~~~--------~~~~~~~e~~~~~~~~~~~~l~~k~~~~-~~~~ 638 (694)
+.+-..+..-|++ +..++.=|..+.+.++++-..|+.. -+-++.+...++.+.+|.++|-+.|..- +.++
T Consensus 44 ~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~ 123 (155)
T PF07464_consen 44 QNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGAN 123 (155)
T ss_dssp HHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5667778888888 8899999999999998888888864 4556777778888889999998888766 5555
Q ss_pred hhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhh
Q 005493 639 EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 639 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
|+.- .++|-++|+++|-+.-+...|
T Consensus 124 e~l~-----------------~~~K~~~D~~~k~~~~~~~~l 148 (155)
T PF07464_consen 124 EKLQ-----------------PAIKQAYDDAVKAAQKVQKQL 148 (155)
T ss_dssp GGGH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4432 356666666666555544443
No 306
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=61.74 E-value=63 Score=28.03 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 611 QEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 611 ~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
..++++++.+..+++.|+.++..++
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555444
No 307
>PLN02320 seryl-tRNA synthetase
Probab=61.63 E-value=37 Score=38.66 Aligned_cols=42 Identities=29% Similarity=0.308 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHh-HhhhcccccccccCC
Q 005493 611 QEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSDN 652 (694)
Q Consensus 611 ~~~e~~~~~~~~~~~~l~~k~~~~~~~-~e~~~~~~~~~~~~~ 652 (694)
+++.++...+.+++..|++++..++.+ ++....|-|++|.|-
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~V 175 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 334444444444455555555444332 355778999999854
No 308
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=61.56 E-value=29 Score=35.59 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=32.1
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH----------------HHHHHHHHHHHHhhhhHhHhhhcccccc
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD----------------SLKEMELLKEKLAGLELAQEEANSLSNI 647 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~----------------~~~~~~~l~~k~~~~~~~~e~~~~~~~~ 647 (694)
....+|....++-+.|-..++.+.+..++++..|+. ...+...|+.++.-++.++.-++++..+
T Consensus 103 ~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L 182 (240)
T PF12795_consen 103 QENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQEL 182 (240)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 334444445555555555555555555555555442 2235555555555555555544444444
No 309
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.48 E-value=41 Score=34.68 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHh-----
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME-----------LLKEKLA----- 632 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~-----------~l~~k~~----- 632 (694)
+..+.+.+.+.++-..|+.|++....-+++.++.+.+.-++..++++++..+.+..+ .|+.-|+
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf 124 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPF 124 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455566666777777777777777777777777777776666666666665544332 2333222
Q ss_pred hhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 633 GLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 633 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
..++-++-...|..+...-+|-+- ..+..||+-.|.|+.--|+
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~dv~~~---ek~r~vlea~~~E~~yg~~ 167 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDADVSLA---EKFRRVLEAYQIEMEYGRT 167 (251)
T ss_pred ChHHHHHHHHHHHHhhhccCCCHH---HHHHHHHHHHHHHHHhCCc
Confidence 122233445566666666665443 4667778877777654443
No 310
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=61.17 E-value=36 Score=33.08 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=47.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhh----HHHHHHHHhhhh
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHD----VAFLKAVLDDTQ 670 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 670 (694)
.+.++++..+|+.+..---.|+..|.-|-+..+-++...+.|+.-.+.|+.+ ..-++|.|+..+
T Consensus 56 ~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe 123 (178)
T PF14073_consen 56 SKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLE 123 (178)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 4557777788888888888888888888888888888888888777777766 555666555443
No 311
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=61.13 E-value=25 Score=41.17 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=15.3
Q ss_pred cchhhHHHHHHHHhhhhhhhhhhhhhh
Q 005493 654 RLEHDVAFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
||-|+-+--|++++-.+|||..+++-|
T Consensus 269 ~lq~eE~q~~~~~E~~~~ELq~~qe~L 295 (617)
T PF15070_consen 269 RLQHEESQGKVQLEMAHQELQEAQEHL 295 (617)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666665543
No 312
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.83 E-value=1.8e+02 Score=29.33 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=40.1
Q ss_pred eEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCC-CcceeeEEEEECCeEEEEcc
Q 005493 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGG 215 (694)
Q Consensus 150 ~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~R~~~~~~~~~~~lyv~GG 215 (694)
..+...+++||..-|.. ..+.+.++|+.+++-..-. .++ ...++-..+..++.+|..-=
T Consensus 49 QGL~~~~g~i~esTG~y----g~S~ir~~~L~~gq~~~s~---~l~~~~~FgEGit~~gd~~y~LTw 108 (262)
T COG3823 49 QGLEYLDGHILESTGLY----GFSKIRVSDLTTGQEIFSE---KLAPDTVFGEGITKLGDYFYQLTW 108 (262)
T ss_pred cceeeeCCEEEEecccc----ccceeEEEeccCceEEEEe---ecCCccccccceeeccceEEEEEe
Confidence 34566688888887764 2358999999876633222 233 45566788889999998853
No 313
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.79 E-value=37 Score=33.47 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=12.0
Q ss_pred ccccccccchhhhhcccc
Q 005493 473 QFQNEEEYSTAVKMEKNS 490 (694)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ 490 (694)
-||...+|+.--.|.|.+
T Consensus 4 ~f~e~~~~y~lKELEK~~ 21 (188)
T PF03962_consen 4 IFHESKDFYTLKELEKLA 21 (188)
T ss_pred HHhhcCCcccHHHHHHHc
Confidence 356666777666677776
No 314
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=60.78 E-value=67 Score=33.04 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=10.4
Q ss_pred hchhhHHHHHHHhhHHHHhhhhHH
Q 005493 582 NGILEGQLAAALVNREAAEKNFSS 605 (694)
Q Consensus 582 ~~~l~~~l~~~~~~~~~~e~~~~~ 605 (694)
....++.|++|...+++|++.+..
T Consensus 38 ~~~I~~~l~~Ae~~~~eA~~~~~e 61 (246)
T TIGR03321 38 EKKIAGELADADTKKREAEQERRE 61 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 315
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=60.54 E-value=86 Score=33.20 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS------------RQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~------------~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
+.++.+++++-.+-..|..|++.+.+...+++.....=... -++.+.++.....+.+.++.++.....
T Consensus 131 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 210 (301)
T PF14362_consen 131 ASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIA 210 (301)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444555555555555555555555555444443332222 233334444444444444444333332
Q ss_pred hHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q 005493 637 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDEL 689 (694)
Q Consensus 637 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (694)
+-+.... -+++..-+.-.+++.+.|.......|.|+...--.+|
T Consensus 211 ~l~~~~~---------~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 211 ALDAQIA---------ARKARLDEARQAKVAEFQAIISANDGFLARLEALWEL 254 (301)
T ss_pred HHHhhHH---------HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHH
Confidence 2211111 3333444445555666666666666666554444444
No 316
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.46 E-value=74 Score=28.96 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=8.9
Q ss_pred hHHHHHHHHhhhhhhhh
Q 005493 658 DVAFLKAVLDDTQKVNC 674 (694)
Q Consensus 658 ~~~~~~~~~~~~~~~~~ 674 (694)
-..+|..-+.+.|++|.
T Consensus 93 q~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 93 QEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555553
No 317
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.37 E-value=18 Score=31.99 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=11.0
Q ss_pred cchhhHHHHHHHHhhhhhhhhh
Q 005493 654 RLEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~ 675 (694)
-+.+.++=|.|-++|.-+.|.+
T Consensus 55 s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554444
No 318
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.22 E-value=70 Score=39.43 Aligned_cols=11 Identities=55% Similarity=0.443 Sum_probs=6.5
Q ss_pred hhhhhhhhhcc
Q 005493 682 HEFLHDELAGL 692 (694)
Q Consensus 682 ~~~~~~~~~~~ 692 (694)
-|.+..||+||
T Consensus 1726 L~~~~aeL~~L 1736 (1758)
T KOG0994|consen 1726 LEDKAAELAGL 1736 (1758)
T ss_pred HHHHHHHhhhH
Confidence 35566666665
No 319
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=60.12 E-value=3.4e+02 Score=31.79 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=48.4
Q ss_pred CCCCCcceEEEEE---CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcC
Q 005493 296 HPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (694)
Q Consensus 296 ~p~~R~~~sav~~---~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG 372 (694)
.|..+...+.... ++++++.- ....+++.++..+.+.+.+...... +....-+.++..+++++|-+.++
T Consensus 424 ~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~ps~kel~~~~~~---~~~~~I~~l~~SsdG~yiaa~~t 495 (691)
T KOG2048|consen 424 VPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELETPSFKELKSIQSQ---AKCPSISRLVVSSDGNYIAAIST 495 (691)
T ss_pred chhhhccceeeEEEecCceEEEEe-----cccceeEEEEecCcchhhhhccccc---cCCCcceeEEEcCCCCEEEEEec
Confidence 3555544444432 67777766 2334678888888777665432211 12222222333345678888886
Q ss_pred CCCCCCCcEEEEECccCC
Q 005493 373 IKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 373 ~~~~~~~~v~~~di~~~~ 390 (694)
.. .+++|++.+.+
T Consensus 496 ~g-----~I~v~nl~~~~ 508 (691)
T KOG2048|consen 496 RG-----QIFVYNLETLE 508 (691)
T ss_pred cc-----eEEEEEcccce
Confidence 65 89999998887
No 320
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=59.99 E-value=31 Score=36.87 Aligned_cols=19 Identities=16% Similarity=-0.099 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHhhhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKVNC 674 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~ 674 (694)
+.+++-+++-++..|..|.
T Consensus 185 ~~~i~~~~~~l~~a~~~l~ 203 (334)
T TIGR00998 185 QPAVQEAKERLKTAWLALK 203 (334)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 3455666666665555543
No 321
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=59.96 E-value=2.9e+02 Score=30.90 Aligned_cols=24 Identities=0% Similarity=-0.209 Sum_probs=18.8
Q ss_pred CcEEEEECccCCcCCCccccCCCC
Q 005493 379 NQVEVLSIEKNESSMGRRSTPNAK 402 (694)
Q Consensus 379 ~~v~~~di~~~~w~~~w~~~~~~~ 402 (694)
+..||||..++.|-.+|...-.+.
T Consensus 307 ~~tlcyD~at~~~~~qw~~l~tg~ 330 (469)
T PF11134_consen 307 RKTLCYDAATSQWGEQWFILKTGF 330 (469)
T ss_pred CceEEEEcccCCcccceEEEeccc
Confidence 478999999999988787655543
No 322
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.95 E-value=44 Score=30.41 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
+....+++.+-+....|.+.|-..++..|+.+...+.+
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~ 70 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEENEELRALKKEV 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777877888887765544443
No 323
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=59.92 E-value=43 Score=32.53 Aligned_cols=49 Identities=27% Similarity=0.275 Sum_probs=43.4
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHH
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK 616 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~ 616 (694)
.+++.++++++-.+=.+||.||+---.-.+-||++...|++-...+++.
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e 107 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRE 107 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999998776666554
No 324
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.74 E-value=28 Score=38.98 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~ 632 (694)
++++++-=.+.+.||.||++-. +++..+-+.++++|.||.....|.+.||+++.
T Consensus 68 qSALteqQ~kasELEKqLaaLr-------qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIR-------RELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666666553 33443444556678888888888888888883
No 325
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=59.64 E-value=11 Score=32.75 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHH
Q 005493 611 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (694)
Q Consensus 611 ~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
.++...|+-+.+|.++|+.||+.+|. +|-+|.++++.+|...
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~--------------eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELED--------------ENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhc
Confidence 36778888888999999999998883 5777888888888765
No 326
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.63 E-value=15 Score=42.32 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=27.7
Q ss_pred hhhcccccccccCCccchhhHHHHHHHHhhh
Q 005493 639 EEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (694)
Q Consensus 639 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (694)
||.|++..|-.-.|++|..|+.|+.--||-+
T Consensus 259 eekn~lie~~n~Nn~kL~eEl~kvin~L~vp 289 (867)
T KOG2148|consen 259 EEKNNLIEMQNVNNKKLIEELDKVINRLDVP 289 (867)
T ss_pred hcccchhhhhccchHHHHHHHHHHHHhccCc
Confidence 6789999999999999999999999888744
No 327
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.57 E-value=51 Score=40.27 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccc
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~ 649 (694)
--|+++.+|-..+..|.+||..-.. +.+.+++|--.+.-+|.+++....+++.+|..|...+++-...+++-+..-
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~----~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~ 724 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQK----RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFG 724 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5578999999999999999998776 444788888888889999999999999999999988887766666555444
Q ss_pred cCCccchhhHHHHHHHHhhhhhhhhh
Q 005493 650 SDNVRLEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (694)
..=..+++++.-..--+++.|++..-
T Consensus 725 p~i~~i~r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 725 PEISEIKRKLQNREGEMKELEERMNK 750 (1141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335566666666666666665443
No 328
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.40 E-value=11 Score=36.21 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=47.1
Q ss_pred hhHHHHHHHhhHHHHhhhhHHH--HhhHHHHHHHH------H---------------------------HHHHHHHHHHH
Q 005493 585 LEGQLAAALVNREAAEKNFSSV--LKSRQEMEKKL------A---------------------------DSLKEMELLKE 629 (694)
Q Consensus 585 l~~~l~~~~~~~~~~e~~~~~~--~~~~~~~e~~~------~---------------------------~~~~~~~~l~~ 629 (694)
|+.|+.+..+....+|+.|+.| |+.+..-+..+ + .+.+-.++||.
T Consensus 56 l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkk 135 (187)
T KOG3313|consen 56 LLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKK 135 (187)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHh
Confidence 4556666777788889999887 22221111001 0 24556688899
Q ss_pred HHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhh
Q 005493 630 KLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (694)
Q Consensus 630 k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (694)
+|+.++.-++. +|||+.||++-..-||-
T Consensus 136 nl~sa~k~l~~--------------~~~DldfLrdQvTTtEV 163 (187)
T KOG3313|consen 136 NLTSAVKSLDV--------------LEEDLDFLRDQVTTTEV 163 (187)
T ss_pred hHHHHHHHHHH--------------HHHHHHHHHhhceeeee
Confidence 99988865543 58999999987665553
No 329
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.39 E-value=74 Score=33.73 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=22.7
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh
Q 005493 603 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (694)
Q Consensus 603 ~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~ 640 (694)
.++++...-.+++|+....-|.|+|...|+....+|.+
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~ 273 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQ 273 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33345555556666666666666666666666665544
No 330
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.97 E-value=25 Score=39.06 Aligned_cols=31 Identities=42% Similarity=0.533 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhHhHhh--------hcccccccccC
Q 005493 621 LKEMELLKEKLAGLELAQEE--------ANSLSNIVHSD 651 (694)
Q Consensus 621 ~~~~~~l~~k~~~~~~~~e~--------~~~~~~~~~~~ 651 (694)
..+++.|++++.++|.+.++ ..++-||+|.+
T Consensus 74 ~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~ 112 (429)
T COG0172 74 IAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHES 112 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccc
Confidence 33444444444444443332 24588999854
No 331
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=58.96 E-value=94 Score=29.51 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=13.4
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
+|.....++|+.|...+++|++.+...
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~ 79 (156)
T CHL00118 53 ERKEYIRKNLTKASEILAKANELTKQY 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554443
No 332
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.80 E-value=1.1e+02 Score=28.26 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=12.9
Q ss_pred ccchhhHHHHHHHHhhhhhhh
Q 005493 653 VRLEHDVAFLKAVLDDTQKVN 673 (694)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~ 673 (694)
..||.+++-++.-++|..++.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666553
No 333
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.63 E-value=33 Score=34.43 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=8.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 005493 606 VLKSRQEMEKKLADSLKEMEL 626 (694)
Q Consensus 606 ~~~~~~~~e~~~~~~~~~~~~ 626 (694)
+-+....|+|+.+...+|+.-
T Consensus 177 ~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHH
Confidence 333333334444443343333
No 334
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=58.50 E-value=52 Score=28.80 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=42.4
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
-++.+|.++.......|+--..+.....+|+...+.+.+..+.|++|-..++.-
T Consensus 11 ~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~ 64 (99)
T PF10046_consen 11 YVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPY 64 (99)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888777777778888888888888888888888777643
No 335
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=58.45 E-value=48 Score=35.80 Aligned_cols=28 Identities=29% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHhhchhhHHHHHHHhhHHHHhhhh
Q 005493 576 AALIRKNGILEGQLAAALVNREAAEKNF 603 (694)
Q Consensus 576 ~~~~~~~~~l~~~l~~~~~~~~~~e~~~ 603 (694)
+.|-|-+..+|+-|.++...+|.|+|.-
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEA 329 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEA 329 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777666666666543
No 336
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=58.30 E-value=49 Score=35.84 Aligned_cols=61 Identities=30% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSS--------VLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~--------~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
.+..+..+-...|+||..|...+..||+..+. +++.|+..=+-+++.+ ..||..+|++-.+
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki---~elkr~lAd~v~~ 71 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKI---AELKRQLADRVAA 71 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 34556666677899999999999999887654 3566665544444333 3344445544433
No 337
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.29 E-value=42 Score=39.56 Aligned_cols=114 Identities=20% Similarity=0.242 Sum_probs=70.6
Q ss_pred HHHHHHHHhhchhhHHHHH---HHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHH-----H-----HHHHHHHhh-hhHhH
Q 005493 573 SKMAALIRKNGILEGQLAA---ALVNREAAEKNFSSVLKSRQEMEKKLADSLKE-----M-----ELLKEKLAG-LELAQ 638 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~---~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~-----~-----~~l~~k~~~-~~~~~ 638 (694)
.+.+.|+-..+.+++|++. -+.++|+..|+-.+|-.+-|++++|+...-++ + .-||+.-.+ +++|-
T Consensus 379 ~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraI 458 (1265)
T KOG0976|consen 379 EELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAI 458 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHH
Confidence 3455566666677777765 34566666666666666666666665432221 1 112221111 22222
Q ss_pred hhhcc--------------------cccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 005493 639 EEANS--------------------LSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLH 686 (694)
Q Consensus 639 e~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (694)
|+-|. .=|++-++|.|--.-.+|+|.-+.+|--++.|-|.-||+-..-
T Consensus 459 eQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~ag 526 (1265)
T KOG0976|consen 459 EQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKAG 526 (1265)
T ss_pred HHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 22222 3467888888888889999999999999999999998876543
No 338
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=58.18 E-value=36 Score=28.38 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhh
Q 005493 610 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVN 673 (694)
Q Consensus 610 ~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (694)
-+++|.|++.+...+++|+-.|..++..-...+..-+.+.+.+--|+++..-||.=..-=|--|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999998888888877777776643322222233344445556666666555444444333
No 339
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=58.10 E-value=42 Score=41.20 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHhhchhhHHHHHHHhhHHHHhhhhH
Q 005493 575 MAALIRKNGILEGQLAAALVNREAAEKNFS 604 (694)
Q Consensus 575 ~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~ 604 (694)
++++....+.|+.||-+++-.+-|.|.+||
T Consensus 1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Ls 1256 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLS 1256 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 344444455555555555555555555554
No 340
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.00 E-value=67 Score=31.22 Aligned_cols=58 Identities=31% Similarity=0.311 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~ 632 (694)
-|-.+++++..=|+.++|-++...+-+++|..|+.-. +++++|....++.+.||.+|+
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~-------el~kklnslkk~~e~lr~el~ 140 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESIENRKAGREETEERTD-------ELTKKLNSLKKILESLRWELA 140 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777778888888888888888877765442 334444444344444444443
No 341
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=57.79 E-value=38 Score=28.84 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=40.5
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHH---HhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~---~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
++-..+|+.|+.-...+|++|+.|-+. -+.|+.+|+.+..+.+-.+..+++|..+-.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344567888888888889999888876 467788886666666666666666665543
No 342
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=57.69 E-value=32 Score=33.56 Aligned_cols=51 Identities=29% Similarity=0.397 Sum_probs=33.2
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHH---------HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSV---------LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~---------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
+.+.|+.|++......++.|..++.. |+-|.|+|+-++ ..+.|+.+|+.+|
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~----~l~~le~~~~~~e 145 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLE----RLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 44556666666666666666666653 777777776554 4567777777754
No 343
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=57.50 E-value=82 Score=30.78 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=9.6
Q ss_pred HHHhhhhhhhhhhhhhhhhh
Q 005493 664 AVLDDTQKVNCSYYTQLMHE 683 (694)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~ 683 (694)
+.+.+.+++++.-|..-+.+
T Consensus 127 ~~~aea~~~I~~~k~~a~~~ 146 (181)
T PRK13454 127 AKAAESEKRIAEIRAGALES 146 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544444
No 344
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=57.42 E-value=60 Score=37.43 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=62.6
Q ss_pred HHHHHHHHhhchhhHHHHHHHh-----hHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc----
Q 005493 573 SKMAALIRKNGILEGQLAAALV-----NREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS---- 643 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~-----~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~---- 643 (694)
.++..|..+...+++++..... .-+.++++..-..+.-+..+.+++ +..+.|+.|+-.|..++|..-+
T Consensus 145 ~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~---~q~~~le~ki~~lq~a~~~t~~el~~ 221 (629)
T KOG0963|consen 145 VTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQ---EQLEELEKKISSLQSAIEDTQNELFD 221 (629)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445566666666666665433 222333333333222223333332 3345555666555555544332
Q ss_pred cccc------cccCCccch-hhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 005493 644 LSNI------VHSDNVRLE-HDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDELA 690 (694)
Q Consensus 644 ~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (694)
+.+. .-++-|.|. .|++|=++++.+.|+|....|++|+.--...+++
T Consensus 222 ~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 222 LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 1111 222334443 6799999999999999999999998765544443
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=57.18 E-value=18 Score=42.82 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=23.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 603 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 603 ~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
+..+.++.+++++++.....+.|.|.++++.++
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777777777777777777776655
No 346
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=57.17 E-value=57 Score=31.06 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=43.5
Q ss_pred hh-hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 567 IY-QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 567 ~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
++ ||||..+.+.+++.... |+-+...-||+ + +-++.+..|..|+.-..-.|++++.|+-.|
T Consensus 113 ~qhqd~Errl~~m~~~r~l~---l~q~s~~vEqq---~--lqqel~~~e~RlarCr~AlekiE~~l~~~~ 174 (175)
T COG3923 113 AQHQDYERRLLAMVQDRRLQ---LAQQSDLVEQQ---K--LQQELEAYEQRLARCRHALEKIENRLARKE 174 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44 89999999999998654 44444333333 2 666777778888887778888888877654
No 347
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=57.12 E-value=51 Score=38.48 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=23.6
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh
Q 005493 599 AEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (694)
Q Consensus 599 ~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~ 640 (694)
++..|..++++++++-+++.-...+.+.+|..|+.+++++|.
T Consensus 200 vdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~r 241 (916)
T KOG0249|consen 200 VDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDK 241 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456666666555555556666666666666555543
No 348
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=57.10 E-value=38 Score=31.65 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 612 EMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 612 ~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
.+..+|+.+.+|.++|+.||=.+|
T Consensus 128 ~~~a~L~~v~~ERD~Lr~kLlqae 151 (152)
T PF15186_consen 128 LTQAALQEVQKERDLLRWKLLQAE 151 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334446667777888887775554
No 349
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=57.04 E-value=1e+02 Score=33.11 Aligned_cols=90 Identities=10% Similarity=0.152 Sum_probs=54.3
Q ss_pred eEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcE
Q 005493 276 DLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 355 (694)
Q Consensus 276 dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s 355 (694)
.+-.++..+......- ..-+.+.++..+.++++|-|..+. .+..+|+..+....+...... -.-
T Consensus 341 TikvW~~st~efvRtl-----~gHkRGIAClQYr~rlvVSGSSDn-----tIRlwdi~~G~cLRvLeGHEe------LvR 404 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDIECGACLRVLEGHEE------LVR 404 (499)
T ss_pred eEEEEeccceeeehhh-----hcccccceehhccCeEEEecCCCc-----eEEEEeccccHHHHHHhchHH------hhh
Confidence 3667777666655432 234556777788999999887664 488999988765544321111 111
Q ss_pred EEEEeecCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 356 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 356 ~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
++-+. ++=+|-|||++. +-++|..+.
T Consensus 405 ciRFd----~krIVSGaYDGk----ikvWdl~aa 430 (499)
T KOG0281|consen 405 CIRFD----NKRIVSGAYDGK----IKVWDLQAA 430 (499)
T ss_pred heeec----Cceeeeccccce----EEEEecccc
Confidence 23333 355789999875 344454443
No 350
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.68 E-value=82 Score=31.06 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=8.3
Q ss_pred hhhHHHHHHHhhHHHHhhhhHH
Q 005493 584 ILEGQLAAALVNREAAEKNFSS 605 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~ 605 (694)
.|..+++......+++++.+..
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 351
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=56.51 E-value=39 Score=33.39 Aligned_cols=97 Identities=22% Similarity=0.120 Sum_probs=62.2
Q ss_pred CchhhhhhHHHHHHHH-hhchhhHHHHH------------HHhhHHHHhhhhHHHHhhHHHHHHHHH-HHHHHHHHHHHH
Q 005493 565 SSIYQFYESKMAALIR-KNGILEGQLAA------------ALVNREAAEKNFSSVLKSRQEMEKKLA-DSLKEMELLKEK 630 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~------------~~~~~~~~e~~~~~~~~~~~~~e~~~~-~~~~~~~~l~~k 630 (694)
..|-|+|++|+.+.-. ++-..+-+|.+ ...-+++|.|+||-+-+.+.+-++=|+ ++..-+..|.|+
T Consensus 49 ~kI~~~yekKeKqve~~kkI~~S~~lN~~RlKvL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep 128 (220)
T KOG1664|consen 49 LKIMQYYEKKEKQVELQKKIAKSNLLNQSRLKVLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEP 128 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999877543 33333334433 445566777777777666666666666 566666666665
Q ss_pred HhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhh
Q 005493 631 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQ 679 (694)
Q Consensus 631 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (694)
..- |-+ .|.|+.-++|++++.--++..--++
T Consensus 129 ~~I--------------vrc----re~D~~lVe~~~~~a~~~y~~ka~~ 159 (220)
T KOG1664|consen 129 EVI--------------VRC----REKDLKLVEAALPKAIEEYKEKAGV 159 (220)
T ss_pred eeE--------------Eee----hhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 443 322 4889999999999887766554433
No 352
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=56.47 E-value=54 Score=38.05 Aligned_cols=79 Identities=35% Similarity=0.438 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHHhhchhh-------HHHHHHHhhHHHHhhhh--HHHHhhHHHHH----------HHHHHHHHHHHHHHH
Q 005493 569 QFYESKMAALIRKNGILE-------GQLAAALVNREAAEKNF--SSVLKSRQEME----------KKLADSLKEMELLKE 629 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~-------~~l~~~~~~~~~~e~~~--~~~~~~~~~~e----------~~~~~~~~~~~~l~~ 629 (694)
--.|+|+++++++--+|. ..|++++-+-|.||||- ..+..+=++|- |||-..+|+.|-|.+
T Consensus 412 a~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~ 491 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEE 491 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 356888888887766554 44566666667777763 23333333332 333344445555555
Q ss_pred HHh-hhhHhHhhhcccccc
Q 005493 630 KLA-GLELAQEEANSLSNI 647 (694)
Q Consensus 630 k~~-~~~~~~e~~~~~~~~ 647 (694)
|.. -..+-|+|.|.|+.|
T Consensus 492 K~ge~i~~L~sE~~~lk~i 510 (961)
T KOG4673|consen 492 KKGELITKLQSEENKLKSI 510 (961)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 544 333334455544444
No 353
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=56.42 E-value=1.3e+02 Score=29.94 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=66.3
Q ss_pred hhhhHHHHHHHHhhchhhHHH---HHHHhhHHHHhhhhHHHHhhHHH----HHHHHH---HH-HHHHHHHHHHHhhhhHh
Q 005493 569 QFYESKMAALIRKNGILEGQL---AAALVNREAAEKNFSSVLKSRQE----MEKKLA---DS-LKEMELLKEKLAGLELA 637 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~e~~~~~~~~~~~~----~e~~~~---~~-~~~~~~l~~k~~~~~~~ 637 (694)
.+-+.+++++..+|.+|.+.- +.|+...|-.|.+|+-++..-.+ +.++|- +. -..-..+|++=+.+.+.
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999998887654 44888899999999987433222 111111 11 11223444455555556
Q ss_pred HhhhcccccccccCCcc----chhhHHHHHHHHhhhhhhhhh
Q 005493 638 QEEANSLSNIVHSDNVR----LEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 638 ~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 675 (694)
+.+...|...+-+-|+- |...|+-+.+.|++..+.+..
T Consensus 102 ~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 102 KDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665653 456677777777777766554
No 354
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=56.41 E-value=2.1e+02 Score=32.27 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=56.9
Q ss_pred EEEEEcCCC----cEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCc
Q 005493 277 LYSLDFETM----IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNK 352 (694)
Q Consensus 277 v~~yd~~t~----~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~ 352 (694)
|..||.... .|.+.. ..|-.+.|.+..+..|++-=|++.. ++.||+....-..... .-.
T Consensus 189 VtlwDv~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG~Dkk-----i~~yD~~s~~s~~~l~-------y~~ 251 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVGYDKK-----INIYDIRSQASTDRLT-------YSH 251 (673)
T ss_pred EEEEeccCCCcccchhhhc-----cCCcCcceecCCccceEEEecccce-----EEEeecccccccceee-------ecC
Confidence 777887653 344442 3355566666678899999998865 9999998655433221 222
Q ss_pred CcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 353 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 353 ~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
-++.+.+. ..+.+++.|-..+ .++.||+....
T Consensus 252 Plstvaf~--~~G~~L~aG~s~G----~~i~YD~R~~k 283 (673)
T KOG4378|consen 252 PLSTVAFS--ECGTYLCAGNSKG----ELIAYDMRSTK 283 (673)
T ss_pred Ccceeeec--CCceEEEeecCCc----eEEEEecccCC
Confidence 34455554 3456666666543 57888887655
No 355
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.15 E-value=41 Score=29.97 Aligned_cols=53 Identities=30% Similarity=0.377 Sum_probs=35.6
Q ss_pred HHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 577 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 577 ~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
.+......||+||..-++..++..+.+..++++-+.|. -|-+.|+++|..++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~-------~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR-------IENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 34455566777777777777777777777765555443 356778888877764
No 356
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=56.14 E-value=98 Score=30.81 Aligned_cols=65 Identities=25% Similarity=0.293 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH---HhhH----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---LKSR----QEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~---~~~~----~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
...++++-..+--.|..||-.+-+.++..|..+..+ +.+| +..+..|+....+.+.|++|+..+|
T Consensus 22 ~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le 93 (202)
T PF06818_consen 22 SQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLE 93 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Confidence 334555555555567788888777777777666654 3333 3345556666667788888877766
No 357
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.91 E-value=65 Score=28.09 Aligned_cols=70 Identities=26% Similarity=0.267 Sum_probs=49.4
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHH---------HHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAA---------ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
+.-++....++..+-+++..|+..+-- .+..+.+.|++|..+|+..- .+|-+.+..+++.|+.|...++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR--~rK~~~l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVR--SRKDQLLMEQIEELKKKERELE 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 445577778888888888888766432 56677888888888765443 3455566778888888887775
Q ss_pred H
Q 005493 636 L 636 (694)
Q Consensus 636 ~ 636 (694)
.
T Consensus 89 ~ 89 (100)
T PF01486_consen 89 E 89 (100)
T ss_pred H
Confidence 3
No 358
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.88 E-value=18 Score=37.63 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhhHhHhhhcccccccccCCc
Q 005493 619 DSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 653 (694)
Q Consensus 619 ~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~ 653 (694)
+.+|..|+||.|-++++|-|++.-++++.+-..|-
T Consensus 68 eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNW 102 (313)
T KOG3088|consen 68 ELLKKQEELRRKEQELDRRERALARAGIVIRENNW 102 (313)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCC
Confidence 33466788888888888888888888776666554
No 359
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=55.79 E-value=3e+02 Score=29.77 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=35.0
Q ss_pred EEEEEC-CcEEEEEc-CCCCCC-----CCCeEEEEEcCC-Cc-EEEeeccCCCCCCCcceEEE-EE----CCEE-EEEcC
Q 005493 253 VAALYD-DKNLLIFG-GSSKSK-----TLNDLYSLDFET-MI-WTRIKIRGFHPSPRAGCCGV-LC----GTKW-YIAGG 317 (694)
Q Consensus 253 s~~~~~-~~~lyv~G-G~~~~~-----~~~dv~~yd~~t-~~-W~~l~~~~~~p~~R~~~sav-~~----~~~i-yV~GG 317 (694)
.++.+. ++.+.||| |++... ....+|++|+++ +. ...+... ....+.+.. .+ ++.+ +++.|
T Consensus 152 ~I~~~~~g~w~~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~----~~~~gl~~~~~~D~d~DG~~D~vYaG 227 (335)
T PF05567_consen 152 QIAKVKNGKWVVIFGSGYNSDDVDSSSGGAALYILDADTTGALIKKIDVP----GGSGGLSSPAVVDSDGDGYVDRVYAG 227 (335)
T ss_dssp EEEEETTSSEEEEEE--BS-TT-------EEEEEEETTT---EEEEEEE------STT-EEEEEEE-TTSSSEE-EEEEE
T ss_pred EEEEccCCcEEEEEccCCCCCcccccCCCcEEEEEECCCCCceEEEEecC----CCCccccccEEEeccCCCeEEEEEEE
Confidence 444453 35555665 665433 345799999998 54 3333321 212132322 22 2332 55556
Q ss_pred CCCCCCcCeEEEEECCC---CcEEE
Q 005493 318 GSRKKRHAETLIFDILK---GEWSV 339 (694)
Q Consensus 318 ~~~~~~~~~v~~yd~~t---~~W~~ 339 (694)
-.. ..+|++|+.. ..|..
T Consensus 228 Dl~----GnlwR~dl~~~~~~~~~~ 248 (335)
T PF05567_consen 228 DLG----GNLWRFDLSSANPSSWSV 248 (335)
T ss_dssp ETT----SEEEEEE--TTSTT-GG-
T ss_pred cCC----CcEEEEECCCCCccccee
Confidence 433 3699999975 34654
No 360
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=55.56 E-value=3.2e+02 Score=31.09 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=93.0
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCC-----CCCcceeeEEEEE-------CCeEEEEccccCCCccc
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD-----IPVARSGHTVVRA-------SSVLILFGGEDGKRRKL 223 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~-----~p~~R~~~~~~~~-------~~~lyv~GG~~~~~~~~ 223 (694)
++.|+++-|.. ..-.||-....|.+.. .|+ |-. --+|.+... +...|+.-+.++.
T Consensus 226 g~~iLvvsg~a-------qakl~DRdG~~~~e~~-KGDQYI~Dm~n-TKGHia~lt~g~whP~~k~~FlT~s~Dgt---- 292 (641)
T KOG0772|consen 226 GDQILVVSGSA-------QAKLLDRDGFEIVEFS-KGDQYIRDMYN-TKGHIAELTCGCWHPDNKEEFLTCSYDGT---- 292 (641)
T ss_pred CCeEEEEecCc-------ceeEEccCCceeeeee-ccchhhhhhhc-cCCceeeeeccccccCcccceEEecCCCc----
Confidence 67788887753 4566777777776654 232 222 234444332 2345666555433
Q ss_pred cceEEeeCC--CCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeecc--CCCCCC
Q 005493 224 NDLHMFDLK--SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSP 299 (694)
Q Consensus 224 ~~v~~yd~~--t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~--~~~p~~ 299 (694)
+-++|.. ..+-+.+.+.+ .-..|...+.|.++..-=.|.+|+... .|..|+. +.|..-+.+ .....+
T Consensus 293 --lRiWdv~~~k~q~qVik~k~-~~g~Rv~~tsC~~nrdg~~iAagc~DG----SIQ~W~~--~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 293 --LRIWDVNNTKSQLQVIKTKP-AGGKRVPVTSCAWNRDGKLIAAGCLDG----SIQIWDK--GSRTVRPVMKVKDAHLP 363 (641)
T ss_pred --EEEEecCCchhheeEEeecc-CCCcccCceeeecCCCcchhhhcccCC----ceeeeec--CCcccccceEeeeccCC
Confidence 2233332 22222222221 223455555555543212466776432 3667774 455544332 111223
Q ss_pred CcceEEEEE--CCEEEEEcCCCCCCCcCeEEEEECCC-----CcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcC
Q 005493 300 RAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK-----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (694)
Q Consensus 300 R~~~sav~~--~~~iyV~GG~~~~~~~~~v~~yd~~t-----~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG 372 (694)
....+++.+ ++++++-=|.+.. +-++|+.. +.|+.++. ..+..-. ++.+ .+.|++.|-
T Consensus 364 g~~Itsi~FS~dg~~LlSRg~D~t-----LKvWDLrq~kkpL~~~tgL~t---~~~~tdc-----~FSP--d~kli~TGt 428 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYLLSRGFDDT-----LKVWDLRQFKKPLNVRTGLPT---PFPGTDC-----CFSP--DDKLILTGT 428 (641)
T ss_pred CCceeEEEeccccchhhhccCCCc-----eeeeeccccccchhhhcCCCc---cCCCCcc-----ccCC--CceEEEecc
Confidence 333344443 6676666666543 44555543 45666542 1122222 2222 246777776
Q ss_pred CC--CCCCCcEEEEECccC
Q 005493 373 IK--KEPSNQVEVLSIEKN 389 (694)
Q Consensus 373 ~~--~~~~~~v~~~di~~~ 389 (694)
.. +.....++.||..+-
T Consensus 429 S~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 429 SAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred cccCCCCCceEEEEeccce
Confidence 52 233445666665543
No 361
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=55.48 E-value=51 Score=42.64 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=10.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhh
Q 005493 657 HDVAFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
++..=+.+-+++..+++...++.|
T Consensus 368 ~~~~~~~~r~~~~~~~l~~~~~el 391 (1353)
T TIGR02680 368 RRLDEEAGRLDDAERELRAAREQL 391 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 362
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=55.13 E-value=1.2e+02 Score=27.02 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhh
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~ 601 (694)
+|.+..+++.+......|+.|+.-+..-+++.++
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777877777777777665554444443
No 363
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.12 E-value=51 Score=41.31 Aligned_cols=77 Identities=21% Similarity=0.112 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHhhhhHhHhhhcc
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL-----KEMELLKEKLAGLELAQEEANS 643 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~-----~~~~~l~~k~~~~~~~~e~~~~ 643 (694)
...+.|++.+-.++..+|+.|..+..+.|.+.++...+-+..+++|+.++... +..++.++.++..++.+|++++
T Consensus 176 ~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~ 255 (1109)
T PRK10929 176 TALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGD 255 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 45677888888889999999999988888888888888777788888776533 3445566666666665555544
Q ss_pred cc
Q 005493 644 LS 645 (694)
Q Consensus 644 ~~ 645 (694)
+.
T Consensus 256 ~~ 257 (1109)
T PRK10929 256 LP 257 (1109)
T ss_pred CC
Confidence 43
No 364
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.99 E-value=13 Score=36.87 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=9.5
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
.-..|...|+.+.+.+.+..-+|..+....+++++++....+.+..|+..++.++
T Consensus 75 ~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~ 129 (194)
T PF08614_consen 75 KLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLE 129 (194)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666666666666666666666666666666666666655554
No 365
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.94 E-value=41 Score=34.21 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=26.7
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~ 631 (694)
+|+|-+.++...+-+|.+.++.++..+.++|+++.......+++++|.
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A 75 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA 75 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555543
No 366
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.48 E-value=1.3e+02 Score=28.81 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=50.7
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccccccc
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 648 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~ 648 (694)
...+.++.+|-.+...|++++..+.+.+-...+.+++ ++|..+++...++.+.|+.||..+... ... |
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~----~~~---v 142 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSG----SKP---V 142 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCC---C
Confidence 3444455555555555555555444444444444433 478888888888899999999888631 111 1
Q ss_pred ccCCccchhhHHHHHHHHhhhhhhh
Q 005493 649 HSDNVRLEHDVAFLKAVLDDTQKVN 673 (694)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (694)
. +.|+..++.-....+|+.
T Consensus 143 -----s-~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 143 -----S-PEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred -----C-HHHHHHHHHHHHHHHHHH
Confidence 1 456666665555555543
No 367
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.34 E-value=84 Score=27.64 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=23.8
Q ss_pred hchhhHHHHHHHhhHHHHhhhhHHHHh---hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 582 NGILEGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 582 ~~~l~~~l~~~~~~~~~~e~~~~~~~~---~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
...|..+++...+.+-+.-|......+ .++++-+....+.+++..|++++..++
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433 234444444444445555555544444
No 368
>PRK03918 chromosome segregation protein; Provisional
Probab=54.11 E-value=86 Score=38.53 Aligned_cols=38 Identities=34% Similarity=0.387 Sum_probs=15.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
-+.+.++++++....++.+.+++++..++.+.++...+
T Consensus 679 ~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l 716 (880)
T PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444443333
No 369
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=53.87 E-value=3e+02 Score=29.22 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCCCccceEEEEEC---CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCC
Q 005493 143 KIPACRGHSLISWG---KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK 219 (694)
Q Consensus 143 ~~p~r~~~s~v~~~---~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~ 219 (694)
..|+..+-+.+.+. +.+.+. -++ .++-.||...+.-...-. -.+|. -.++..+..=.+.||.++
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvs-sWD------gslrlYdv~~~~l~~~~~-~~~pl----L~c~F~d~~~~~~G~~dg- 75 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVS-SWD------GSLRLYDVPANSLKLKFK-HGAPL----LDCAFADESTIVTGGLDG- 75 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEE-ecc------CcEEEEeccchhhhhhee-cCCce----eeeeccCCceEEEeccCc-
Confidence 34444455555554 445443 232 267888888773322110 01221 234455666677787664
Q ss_pred CccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCC
Q 005493 220 RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS 298 (694)
Q Consensus 220 ~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~ 298 (694)
.+-+||+.+..=..+. .--.+.. ++... ... .+|.||++.. +-.+|+....- . +..-.
T Consensus 76 -----~vr~~Dln~~~~~~ig---th~~~i~--ci~~~~~~~-~vIsgsWD~~-----ik~wD~R~~~~----~-~~~d~ 134 (323)
T KOG1036|consen 76 -----QVRRYDLNTGNEDQIG---THDEGIR--CIEYSYEVG-CVISGSWDKT-----IKFWDPRNKVV----V-GTFDQ 134 (323)
T ss_pred -----eEEEEEecCCcceeec---cCCCceE--EEEeeccCC-eEEEcccCcc-----EEEEecccccc----c-ccccc
Confidence 3789999888766663 2111211 22222 233 6899998754 77888765111 1 11112
Q ss_pred CCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 299 PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 299 ~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
+-.-+++-+ .+..+|+|+... .+.+||+.+..
T Consensus 135 ~kkVy~~~v-~g~~LvVg~~~r-----~v~iyDLRn~~ 166 (323)
T KOG1036|consen 135 GKKVYCMDV-SGNRLVVGTSDR-----KVLIYDLRNLD 166 (323)
T ss_pred CceEEEEec-cCCEEEEeecCc-----eEEEEEccccc
Confidence 223334433 556666776554 48999987743
No 370
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=53.85 E-value=81 Score=37.23 Aligned_cols=101 Identities=28% Similarity=0.272 Sum_probs=56.8
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----hhhHhHhhhccccc---ccccCCccc
Q 005493 583 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA----GLELAQEEANSLSN---IVHSDNVRL 655 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~----~~~~~~e~~~~~~~---~~~~~~~~~ 655 (694)
+.||.|++.-+...--.++.+-....+++...++.+++.+..+.|+.++. .|+..|+.++.+.- +-|--+-||
T Consensus 527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rl 606 (698)
T KOG0978|consen 527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRL 606 (698)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333444555555555666665555555442 33444444443322 344456899
Q ss_pred hhhHHHHHHHHhhhhhhhh--hhhhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKVNC--SYYTQLMHE 683 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 683 (694)
|.|..-|+-.|..++|+-+ |-=++|+-|
T Consensus 607 eEE~e~L~~kle~~k~~~~~~s~d~~L~EE 636 (698)
T KOG0978|consen 607 EEELERLKRKLERLKKEESGASADEVLAEE 636 (698)
T ss_pred HHHHHHHHHHHHHhccccccccccHHHHHH
Confidence 9999999999999999988 334444444
No 371
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=53.82 E-value=68 Score=36.44 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhh
Q 005493 659 VAFLKAVLDDTQKVNCSYYTQ 679 (694)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~ 679 (694)
..-.+.+-.|+||.+...++.
T Consensus 327 q~er~~iAkD~qk~~~e~~~e 347 (489)
T PF05262_consen 327 QQERKEIAKDQQKLIEEQKAE 347 (489)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 334455566888888776654
No 372
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=53.54 E-value=3.2e+02 Score=29.55 Aligned_cols=196 Identities=14% Similarity=0.095 Sum_probs=93.1
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCC--CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v 175 (694)
+++||+ |...+ .+++||..+ ..|..-.. . . .+..-..+..++.+|+.- ....+
T Consensus 111 ~G~i~~-g~~~g-----~~y~ld~~~G~~~W~~~~~----------~-~-~~~~~~~v~~~~~v~~~s-------~~g~~ 165 (370)
T COG1520 111 DGKIYV-GSWDG-----KLYALDASTGTLVWSRNVG----------G-S-PYYASPPVVGDGTVYVGT-------DDGHL 165 (370)
T ss_pred CCeEEE-ecccc-----eEEEEECCCCcEEEEEecC----------C-C-eEEecCcEEcCcEEEEec-------CCCeE
Confidence 566555 33332 789999965 47887665 1 1 112222333455555542 22478
Q ss_pred EEEECCCC--cEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcc--cCCCCC---
Q 005493 176 WTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLH--CTGTGP--- 246 (694)
Q Consensus 176 ~~yd~~t~--~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~--~~g~~P--- 246 (694)
+++|..+. .|..-...+ ...+.....+...+.+|+-. .. ....++.+|+.+++ |..-. ..+...
T Consensus 166 ~al~~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~vy~~~-~~----~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~ 238 (370)
T COG1520 166 YALNADTGTLKWTYETPAP--LSLSIYGSPAIASGTVYVGS-DG----YDGILYALNAEDGTLKWSQKVSQTIGRTAIST 238 (370)
T ss_pred EEEEccCCcEEEEEecCCc--cccccccCceeecceEEEec-CC----CcceEEEEEccCCcEeeeeeeecccCcccccc
Confidence 88888864 477543211 12222223334455555542 21 12268999997654 87421 111110
Q ss_pred CCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC--cEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCc
Q 005493 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (694)
Q Consensus 247 ~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~--~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~ 324 (694)
.+......+.+++. +|.... ...++++|..+. .|+.-........+........-++++|+..........
T Consensus 239 ~~~~~~~~v~v~~~-~~~~~~------~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~ 311 (370)
T COG1520 239 TPAVDGGPVYVDGG-VYAGSY------GGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGS 311 (370)
T ss_pred cccccCceEEECCc-EEEEec------CCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccc
Confidence 12222233333333 222221 223778877654 477654310011111222222236777777644332234
Q ss_pred CeEEEEEC
Q 005493 325 AETLIFDI 332 (694)
Q Consensus 325 ~~v~~yd~ 332 (694)
..+++++.
T Consensus 312 ~~~~~~~~ 319 (370)
T COG1520 312 GSLYALAD 319 (370)
T ss_pred cceEEEec
Confidence 56777775
No 373
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.48 E-value=65 Score=38.62 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=45.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc----ccccccc---CCccch----hhHHHHHHHHhhhhhhhhh
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS----LSNIVHS---DNVRLE----HDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~----~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~ 675 (694)
++.-+++++++..+.+..+.|.||+..++..||...+ +-+.++. ..-+-| .|+.-++..|++.+.-+..
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQ 657 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667777778888889999999999999987665 4444443 111223 2344444555555544444
Q ss_pred hhhhh
Q 005493 676 YYTQL 680 (694)
Q Consensus 676 ~~~~~ 680 (694)
.+..+
T Consensus 658 lk~k~ 662 (717)
T PF10168_consen 658 LKKKL 662 (717)
T ss_pred HHHHH
Confidence 44443
No 374
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=53.37 E-value=55 Score=28.81 Aligned_cols=70 Identities=27% Similarity=0.363 Sum_probs=35.2
Q ss_pred hhHHHHhhhhHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhh
Q 005493 594 VNREAAEKNFSSVLKSR-QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQ 670 (694)
Q Consensus 594 ~~~~~~e~~~~~~~~~~-~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (694)
..+++.|+.+..+..+- +|+-+.++..-++...++.|+..++..-.|...+ +. .|...|+=||.|+....
T Consensus 15 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~---l~----~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 15 QEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL---LE----SLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC---CC----HCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHcc
Confidence 33334444444443333 5556666666666677777776666444443322 11 23445566666665543
No 375
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.86 E-value=1e+02 Score=31.07 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=20.3
Q ss_pred hHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHH
Q 005493 586 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK 622 (694)
Q Consensus 586 ~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~ 622 (694)
.+.|+.+++..-.+|+++...-+..++.+.+-..+++
T Consensus 44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666655555555555544443
No 376
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=52.80 E-value=1.7e+02 Score=30.56 Aligned_cols=65 Identities=29% Similarity=0.336 Sum_probs=43.9
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHH---------------------------------------HHhhHHHH
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------------------------------------VLKSRQEM 613 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~---------------------------------------~~~~~~~~ 613 (694)
++++.||+....+-.-++.|-+..-.+-+.|+. .||+.-..
T Consensus 57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~ 136 (271)
T PF13805_consen 57 RKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNR 136 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888777666655565555555555555544 18888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 614 EKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 614 e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
|+.|+-.-+-.+.|..+++.++..
T Consensus 137 E~sl~p~R~~r~~l~d~I~kLk~k 160 (271)
T PF13805_consen 137 EESLQPSRDRRRKLQDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhHHHHHHHHHHHhc
Confidence 888887777777777777766543
No 377
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=52.79 E-value=89 Score=31.23 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHhhchhhHH
Q 005493 567 IYQFYESKMAALIRKNGILEGQ 588 (694)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~~ 588 (694)
+.+.|+.+|...|.+...+..+
T Consensus 81 vLe~R~~~I~~~L~~Ae~~k~e 102 (204)
T PRK09174 81 IIETRRDRIAQDLDQAARLKQE 102 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766555433
No 378
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=52.67 E-value=41 Score=37.48 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=41.3
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
..+-++++..+|.--+.+ -...|.-|++-..++++-++.+||++++++.+...++||.+.|+
T Consensus 11 ekyvdeEik~Al~GvKqM-------K~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~ 72 (436)
T PF01093_consen 11 EKYVDEEIKNALNGVKQM-------KTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEE 72 (436)
T ss_pred chhHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666776655443322 23345566667777777788888888888888888888877664
No 379
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=52.29 E-value=1.3e+02 Score=31.24 Aligned_cols=115 Identities=9% Similarity=0.049 Sum_probs=75.9
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHhhhhH
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-----------SLKEMELLKEKLAGLEL 636 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~-----------~~~~~~~l~~k~~~~~~ 636 (694)
.+.++.+....+.+...|.+.|+.....++.+-|+...+.++-+.+-.+... ..|-...+..+-..+|.
T Consensus 101 ~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~ 180 (252)
T cd07675 101 SHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADE 180 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888899999999999999999999999887777766666332 22333344444455566
Q ss_pred hHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005493 637 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFL 685 (694)
Q Consensus 637 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (694)
++.+|..-=|.....+-+ |=-..+-.|||..| +++-.|-..+.|.+
T Consensus 181 aKn~Y~~~L~~~N~~q~k--~Y~e~mP~vfd~lQ-~leE~Ri~~l~e~~ 226 (252)
T cd07675 181 SKNEYAAQLQNFNGEQHK--HFYIVIPQIYKQLQ-EMDERRTVKLSECY 226 (252)
T ss_pred HHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 666665544444333333 11223556777777 57777777777654
No 380
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.27 E-value=49 Score=42.71 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhh
Q 005493 621 LKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (694)
Q Consensus 621 ~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (694)
.++++.|+.+|..++.++..+.. .. .--.|+.+++-+++-|+.+
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~-~~----s~~ele~ei~~~~~el~~l 841 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL-DR----TVQQVNQEKQEKQHELDTV 841 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-cC----CHHHHHHHHHHHHHHHHHH
Confidence 66778888888888776665554 11 1123555566655555555
No 381
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.19 E-value=62 Score=33.26 Aligned_cols=45 Identities=33% Similarity=0.313 Sum_probs=36.0
Q ss_pred cccccCCccchhhHHHHHHHHhhhhhh---hhhhhhhhhhhh--hhhhhh
Q 005493 646 NIVHSDNVRLEHDVAFLKAVLDDTQKV---NCSYYTQLMHEF--LHDELA 690 (694)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~ 690 (694)
|.|-||.-.|+.-+.-=||-|+-|||- |||.|-+.|.|+ .++||-
T Consensus 129 nnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLq 178 (338)
T KOG3647|consen 129 NNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQ 178 (338)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 457788888888888999999999996 689999999875 445553
No 382
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=52.13 E-value=1.6e+02 Score=28.20 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=11.5
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHH
Q 005493 583 GILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
....+.|+.|...+++||+-....
T Consensus 44 ~~I~~~L~~Ae~~k~eAe~l~a~y 67 (155)
T PRK06569 44 TNIQDNITQADTLTIEVEKLNKYY 67 (155)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444433
No 383
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=52.11 E-value=1e+02 Score=37.14 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=63.2
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH---------------------HhhHHHHHHHHHHHHHHHHHHHHH
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---------------------LKSRQEMEKKLADSLKEMELLKEK 630 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~---------------------~~~~~~~e~~~~~~~~~~~~l~~k 630 (694)
..++..|-+++..|+..++.....++.+|..+... .+-.+.-...|...-.|.+.|+++
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777777777777777666651 122222234444455678888888
Q ss_pred HhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 631 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 631 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
|..++...... ..-++-++=...+.|++=|++.++..+|...-..+++.
T Consensus 582 l~~le~~~~~~--~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 582 LRSLEEGNSQP--VDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHTTTT------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCC--cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776443222 22233444557788999999999999999988888774
No 384
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.08 E-value=67 Score=33.74 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.8
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHh
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALV 594 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 594 (694)
..--.||+.+++.+-.++.|||..|+-|-.
T Consensus 58 aNavrdYqrq~~elneEkrtLeRELARaKV 87 (351)
T PF07058_consen 58 ANAVRDYQRQVQELNEEKRTLERELARAKV 87 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445689999999999999999999998643
No 385
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=51.84 E-value=36 Score=30.80 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=13.6
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHH
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREA 598 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 598 (694)
|...+.+.|....+.-+-|.+|.-..|.
T Consensus 31 R~~~lk~dik~~k~~~enledA~~EieL 58 (131)
T KOG1760|consen 31 RKDDLKADIKEAKTEIENLEDASNEIEL 58 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 3444555555555555555554443333
No 386
>PRK12472 hypothetical protein; Provisional
Probab=51.81 E-value=61 Score=36.34 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH---------HhhHHHHHHHHHHHHHHHHHHH----HHHhh
Q 005493 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---------LKSRQEMEKKLADSLKEMELLK----EKLAG 633 (694)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~---------~~~~~~~e~~~~~~~~~~~~l~----~k~~~ 633 (694)
+-+-...+.+.+...-..||+.++.|-+.+.+|+|.|..+ -+-+|+++.|++++.+..+..| .|.+.
T Consensus 212 ~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 291 (508)
T PRK12472 212 AAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAA 291 (508)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3355666677777777777777777888888888887776 4456667777776666554433 44445
Q ss_pred hhHhHhhhc
Q 005493 634 LELAQEEAN 642 (694)
Q Consensus 634 ~~~~~e~~~ 642 (694)
+--+||++.
T Consensus 292 ~~~~~~a~~ 300 (508)
T PRK12472 292 AAATKEAAK 300 (508)
T ss_pred HHHHHHHHH
Confidence 555555543
No 387
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=51.78 E-value=97 Score=28.00 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHh-------hHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALV-------NREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~ 641 (694)
+.-|++|.++|+..+..=+.|..... .+++.+..-...++.-+.++..|. +++-.|.+-...--...-.+
T Consensus 9 ~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr---~qI~~L~e~~~~~~~~~s~~ 85 (117)
T PF10280_consen 9 NEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELR---RQIKYLEEVSIIQPHEGSSY 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCBTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccccccc
Confidence 46789999999999999888888877 788888888888888888887776 44444444433322222223
Q ss_pred cccccc-cccCCccchhh
Q 005493 642 NSLSNI-VHSDNVRLEHD 658 (694)
Q Consensus 642 ~~~~~~-~~~~~~~~~~~ 658 (694)
.+|..- +..-++.+++|
T Consensus 86 ~~l~v~~ln~~~~~~~~~ 103 (117)
T PF10280_consen 86 GALDVGWLNSKKTEVGRD 103 (117)
T ss_dssp TBS---------------
T ss_pred cccchHHHHHhHHHHHHH
Confidence 334333 44444444443
No 388
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=51.60 E-value=77 Score=31.29 Aligned_cols=34 Identities=24% Similarity=0.131 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNF 603 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~ 603 (694)
.++.++..+-.+...|+.++....+..|++||+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 389
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.51 E-value=1.1e+02 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=12.8
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
|....+++|+.|...+++|++-+...
T Consensus 40 R~~~I~~~l~~A~~~~~ea~~~~~e~ 65 (164)
T PRK14471 40 REDSIKNALASAEEARKEMQNLQADN 65 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544443
No 390
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=51.43 E-value=61 Score=37.77 Aligned_cols=25 Identities=44% Similarity=0.502 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 610 RQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 610 ~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
.+++.+++..+.++++.+++.|.++
T Consensus 385 leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 385 LEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444433
No 391
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.37 E-value=3.9e+02 Score=29.79 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=34.6
Q ss_pred EEEEEECCCCc-EEEeeecCCCCCcceeeEEEEEC--CeEEEEccccCCCccccceEEeeCCCCcEEEccc
Q 005493 174 SVWTFDTETEC-WSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (694)
Q Consensus 174 ~v~~yd~~t~~-W~~~~~~g~~p~~R~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~ 241 (694)
+|.+||+...+ ...++ ++... ......++ +.+.+++|.+ -.+|.|+-.+..|+.+..
T Consensus 412 ~V~lwDLRKl~n~kt~~----l~~~~-~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQ----LDEKK-EVNSLSFDQSGTYLGIAGSD------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred eEEEEEehhhcccceee----ccccc-cceeEEEcCCCCeEEeecce------eEEEEEecccccceeeeh
Confidence 48999987654 22222 23222 22333333 6777777543 247888888999999873
No 392
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.31 E-value=78 Score=29.16 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=29.9
Q ss_pred hhhhhHHHH---HHHHhhchhhHHHHHHHhhHHHHhhhhHHH----HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 568 YQFYESKMA---ALIRKNGILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 568 ~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~----~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
++.|+.++. .+++.-..|..++..+.....+++....++ -..+..-+.......++++.++.++.++.
T Consensus 44 q~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 44 QQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555543 244444455555554443333333333333 22222233333334455555555555553
No 393
>PRK02224 chromosome segregation protein; Provisional
Probab=51.30 E-value=58 Score=40.03 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKN 602 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ 602 (694)
..+..++..+-.+...|+.+|+.+...++.+|+-
T Consensus 471 ~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~ 504 (880)
T PRK02224 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666776666666655544433
No 394
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.13 E-value=46 Score=33.45 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=7.4
Q ss_pred HHHhhchhhHHHHHHH
Q 005493 578 LIRKNGILEGQLAAAL 593 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~ 593 (694)
.|++-..+=.+|....
T Consensus 112 vI~R~~~ll~~l~~l~ 127 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLR 127 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455444444444433
No 395
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=51.11 E-value=86 Score=33.44 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHhhhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKVNC 674 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~ 674 (694)
+.+++-+++-|+..+..|.
T Consensus 185 ~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555544
No 396
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=51.09 E-value=2.1e+02 Score=28.18 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=42.1
Q ss_pred CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CC-EEEEEccccCCCCCccEEEEEECCCCcEEEee
Q 005493 112 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 189 (694)
Q Consensus 112 ~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~-~~-~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 189 (694)
....+|++|..++.|..+..... + ....|. + +..+ +. -++++|...+.-..-..+|+|++.++.-..+.
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~--~----~k~sPK--~-i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQN--E----EKYSPK--Y-IEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred cceeEEEEecCCCceEEEEecCc--c----cccCCc--e-eEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 46789999999998876643100 0 011122 1 2333 33 45556644333333458999999999998887
Q ss_pred e
Q 005493 190 A 190 (694)
Q Consensus 190 ~ 190 (694)
.
T Consensus 157 ~ 157 (200)
T PF15525_consen 157 E 157 (200)
T ss_pred e
Confidence 3
No 397
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.89 E-value=1.1e+02 Score=35.88 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhhchhhHHHHH----------------HHhhHHHHhhhhHHH---HhhHHHHHHHHHHHHHHHHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAA----------------ALVNREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKE 629 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~----------------~~~~~~~~e~~~~~~---~~~~~~~e~~~~~~~~~~~~l~~ 629 (694)
+.+.-+|...-++--.|++|+++ |.+..++..+.++-+ -.-.+-+...|+.+..-+-.|+.
T Consensus 633 ~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler 712 (1104)
T COG4913 633 DFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLER 712 (1104)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh-----------hhHhHhhhcccccc-----------------------cccCCccchhhHHHHHHHHhhhhhhhhh
Q 005493 630 KLAG-----------LELAQEEANSLSNI-----------------------VHSDNVRLEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 630 k~~~-----------~~~~~e~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (694)
+.+. +++|+.++|.+-+| +|.+||-.|. .++-.+.||.+.-
T Consensus 713 ~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd~~~-----~~~r~~LqkrIDa 787 (1104)
T COG4913 713 QYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVDIER-----IEHRRQLQKRIDA 787 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhhHHH-----HHHHHHHHHhhhh
Q ss_pred hhhhhhhhhhhhhhhccc
Q 005493 676 YYTQLMHEFLHDELAGLV 693 (694)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~ 693 (694)
.-.-| -++.+|+.|..
T Consensus 788 ~na~L--rrl~~~Iig~m 803 (1104)
T COG4913 788 VNARL--RRLREEIIGRM 803 (1104)
T ss_pred hHHHH--HHHHHHHHHHH
No 398
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=50.82 E-value=89 Score=33.35 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=6.1
Q ss_pred HHHHHhhHHHHhhhhH
Q 005493 589 LAAALVNREAAEKNFS 604 (694)
Q Consensus 589 l~~~~~~~~~~e~~~~ 604 (694)
++.+.+.+++|+.++.
T Consensus 110 i~~~~~~~~~a~~~l~ 125 (334)
T TIGR00998 110 VESLKIKLEQAREKLL 125 (334)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 399
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=50.74 E-value=3.4e+02 Score=28.96 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=85.1
Q ss_pred EEEEEECCCCc-EEEeeec-CCCCCcceeeEEEEECCeEEEEccc-----cCCCccccceEEeeCCCCcEEEcccCCCCC
Q 005493 174 SVWTFDTETEC-WSVVEAK-GDIPVARSGHTVVRASSVLILFGGE-----DGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (694)
Q Consensus 174 ~v~~yd~~t~~-W~~~~~~-g~~p~~R~~~~~~~~~~~lyv~GG~-----~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P 246 (694)
.++.+++++.. |+.+... ...+..|..=..+.-++.+|+---. .........+|+||+ .....++... .
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~-- 161 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-D-- 161 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-c--
Confidence 35666665443 3544432 2345566655555556666664333 122234567999998 4555555311 0
Q ss_pred CCcceeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCC------Cc--EEEeeccCCCCCCCcceEEEEECCEEEEEcC
Q 005493 247 SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET------MI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (694)
Q Consensus 247 ~~R~~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t------~~--W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG 317 (694)
....+ +++.. +++.+|+. ....+.+++|+... +. +.... ...++..-.++--++.+|+...
T Consensus 162 ~~~~N-Gla~SpDg~tly~a-----DT~~~~i~r~~~d~~~g~~~~~~~~~~~~----~~~G~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 162 LTIPN-GLAFSPDGKTLYVA-----DTPANRIHRYDLDPATGPIGGRRGFVDFD----EEPGLPDGMAVDADGNLWVAAV 231 (307)
T ss_pred EEecC-ceEECCCCCEEEEE-----eCCCCeEEEEecCcccCccCCcceEEEcc----CCCCCCCceEEeCCCCEEEecc
Confidence 11111 23333 34456664 22346688887753 11 11111 1223333333444788887555
Q ss_pred CCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCC
Q 005493 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (694)
Q Consensus 318 ~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~ 373 (694)
..+ ..+.+|+++-..-..+. .| ....++.++..+..+.|||..-.
T Consensus 232 ~~g----~~v~~~~pdG~l~~~i~-lP------~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 232 WGG----GRVVRFNPDGKLLGEIK-LP------VKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cCC----ceEEEECCCCcEEEEEE-CC------CCCCccceEeCCCcCEEEEEecC
Confidence 443 25889999844444332 22 12333444443333455555444
No 400
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.73 E-value=57 Score=39.23 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
.+..+.|..+.-+-.+=|++||..+...+++||+.+..-
T Consensus 255 ~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 255 QQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777787778889999999999999999999876
No 401
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=50.66 E-value=1.2e+02 Score=33.56 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-------LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~-------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
+.++.++......++.+|+.|.+.++.|++++.-. .-+++++|...+....-...++.-.+.++.++.+..
T Consensus 112 ~~~~~~~~~~~~~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~~-- 189 (390)
T PRK15136 112 VRQTHQLMINSKQYQANIELQKTALAQAQSDLNRRVPLGNANLIGREELQHARDAVASAQAQLDVAIQQYNANQAMIL-- 189 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q ss_pred ccccccCCccchhhHHHHHHHHhhhhhhhhhhh
Q 005493 645 SNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
..+...+..++-.+|-|+..+..|..|.
T Consensus 190 -----~~~~~~~~~v~~a~a~l~~a~~~L~~t~ 217 (390)
T PRK15136 190 -----NTPLEDQPAVQQAATEVRNAWLALQRTK 217 (390)
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHHhCCE
No 402
>PRK10115 protease 2; Provisional
Probab=50.26 E-value=5.2e+02 Score=30.94 Aligned_cols=210 Identities=8% Similarity=-0.018 Sum_probs=100.2
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEccccCCCCCccEEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
+++.++++-........++++.|+.++.. ++ ..++... +.++.. +++-+++...........++|
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~-----------~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YP-----------ELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CC-----------ccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 44566665433333445677778776531 11 1122222 333333 444333333322112346899
Q ss_pred EEECCCCcE--EEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeC--CCCcEEEcccCCCCCCCcce
Q 005493 177 TFDTETECW--SVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL--KSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 177 ~yd~~t~~W--~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~--~t~~W~~l~~~g~~P~~R~~ 251 (694)
++++.+..- ..+-. . +........... +++.+++..... ..+.++.|+. .+..|..+. ..+... .
T Consensus 203 ~h~lgt~~~~d~lv~~--e-~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~~~~~~~~~~~---~~~~~~-~ 272 (686)
T PRK10115 203 RHTIGTPASQDELVYE--E-KDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAELADAEPFVFL---PRRKDH-E 272 (686)
T ss_pred EEECCCChhHCeEEEe--e-CCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECcCCCCCceEEE---ECCCCC-E
Confidence 999998832 22321 1 112222222223 444444544433 2367888884 334443332 112111 1
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCeEEEEEcC-CCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEE
Q 005493 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 252 hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~-t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~y 330 (694)
+... ..+..+|+.--.+ .....+...++. ...|+.+... ...+.--.....++.+++..-..+. ..++++
T Consensus 273 ~~~~-~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~g~---~~l~~~ 343 (686)
T PRK10115 273 YSLD-HYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQRGL---TSLRQI 343 (686)
T ss_pred EEEE-eCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeCCE---EEEEEE
Confidence 2222 3334477765332 223347777877 5789888642 1122222334457777766643332 357888
Q ss_pred ECCCCcEEEe
Q 005493 331 DILKGEWSVA 340 (694)
Q Consensus 331 d~~t~~W~~l 340 (694)
|+.+.....+
T Consensus 344 ~~~~~~~~~l 353 (686)
T PRK10115 344 NRKTREVIGI 353 (686)
T ss_pred cCCCCceEEe
Confidence 8766555544
No 403
>PRK10698 phage shock protein PspA; Provisional
Probab=50.18 E-value=1e+02 Score=31.16 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=7.0
Q ss_pred HHHHhhchhhHHHHH
Q 005493 577 ALIRKNGILEGQLAA 591 (694)
Q Consensus 577 ~~~~~~~~l~~~l~~ 591 (694)
..+-....+++|++.
T Consensus 49 ~~~A~~k~~er~~~~ 63 (222)
T PRK10698 49 RALAEKKQLTRRIEQ 63 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555544
No 404
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=50.11 E-value=29 Score=30.54 Aligned_cols=74 Identities=26% Similarity=0.257 Sum_probs=53.3
Q ss_pred HHHHHHHhhchhhHHHHHHHhhH-HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccccccccc
Q 005493 574 KMAALIRKNGILEGQLAAALVNR-EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHS 650 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~-~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~ 650 (694)
+-..+-+....+++.|.+-++++ |+|=+=.+.+-+++..+|.|.....+ .|+++-+-++--|++...|+.++..
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~---~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEK---QLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999999999888 99999999888888888888864333 3444444444556677777776665
No 405
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=50.05 E-value=65 Score=33.40 Aligned_cols=67 Identities=27% Similarity=0.276 Sum_probs=36.8
Q ss_pred hhhhhhHHHHHHHHhhc------------hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH--------
Q 005493 567 IYQFYESKMAALIRKNG------------ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-------- 626 (694)
Q Consensus 567 ~~~~~~~~~~~~~~~~~------------~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~-------- 626 (694)
-.|++|++|..|=---+ ..|.||+.-. |.|..--+-+-.+-|...|++.+|.+++
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKE-----ARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKE-----ARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQ 157 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhh
Confidence 45778888876422111 2344444333 3333333333334455566666555554
Q ss_pred ---HHHHHhhhhHhH
Q 005493 627 ---LKEKLAGLELAQ 638 (694)
Q Consensus 627 ---l~~k~~~~~~~~ 638 (694)
|+-=|--||+||
T Consensus 158 N~KLEsLLqsMElAq 172 (305)
T PF15290_consen 158 NKKLESLLQSMELAQ 172 (305)
T ss_pred HhHHHHHHHHHHHHH
Confidence 888888899998
No 406
>PLN03188 kinesin-12 family protein; Provisional
Probab=49.98 E-value=50 Score=41.29 Aligned_cols=38 Identities=26% Similarity=0.209 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHhhchhhHHHHH----------HHhhHHHHhhhhHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAA----------ALVNREAAEKNFSSV 606 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~----------~~~~~~~~e~~~~~~ 606 (694)
-.+|++-..+-.+|.-|..||-| .+.++-+||.-.+.+
T Consensus 1169 ~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a 1216 (1320)
T PLN03188 1169 VEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA 1216 (1320)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888899999999999976 244455555555554
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=49.93 E-value=5.5e+02 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=22.8
Q ss_pred eEEEEECCEEEEEccccCCCCCccEEEEEECCCCc--EEEee
Q 005493 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 189 (694)
Q Consensus 150 ~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 189 (694)
.+-+++++.||+.... +.|+.+|..|++ |+.-+
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 3446679999997442 378888888754 77543
No 408
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.81 E-value=30 Score=42.08 Aligned_cols=82 Identities=30% Similarity=0.299 Sum_probs=50.4
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHhhhhHhHh--------hhccccccc
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-------LKEKLAGLELAQE--------EANSLSNIV 648 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~-------l~~k~~~~~~~~e--------~~~~~~~~~ 648 (694)
-+|+|+.+-..-+|.+-|++++.+.+.-+.|+.++.+.++.++ .|..+-..-+.++ ++|-++
T Consensus 619 ~~eqq~~~~~s~lE~~~kq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~s~~~~~~~~~~~l~~~~a~~--- 695 (1221)
T KOG0245|consen 619 LLEQQRLDYESKLESEQKQLETELREISEEEEEVQWTVKECELALWAKRKAKRHQEQSLRDLLEGNAIFLAAAAALE--- 695 (1221)
T ss_pred hHHHhhHHHHHHHHHHHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH---
Confidence 5788888888888888888888877776666666554443332 2222221111111 222222
Q ss_pred ccCCccchhhHHHHHHHHhhhhhh
Q 005493 649 HSDNVRLEHDVAFLKAVLDDTQKV 672 (694)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~ 672 (694)
+-|-.+|-|.-|+++||||.
T Consensus 696 ----~e~~k~v~~e~al~td~q~~ 715 (1221)
T KOG0245|consen 696 ----VELKKKVRFEEALLTDTQKS 715 (1221)
T ss_pred ----HHhccchhhhhhhccccccc
Confidence 23457899999999999964
No 409
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=49.75 E-value=4.3e+02 Score=29.84 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=79.1
Q ss_pred EEEEEECCCCcEEEeeecCCCCCcceeeE------------EEEECCeEEEEccccCCCccccceEEeeCCCCcEEEccc
Q 005493 174 SVWTFDTETECWSVVEAKGDIPVARSGHT------------VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (694)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~g~~p~~R~~~~------------~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~ 241 (694)
++|.|||.+..-+.+.. .+|..|..-. -+..++.++++= .-...+++++-.+--.++.
T Consensus 288 dIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-------SRGkaFi~~~~~~~~iqv~- 357 (668)
T COG4946 288 DIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-------SRGKAFIMRPWDGYSIQVG- 357 (668)
T ss_pred cEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEE-------ecCcEEEECCCCCeeEEcC-
Confidence 69999999999888764 3444432211 112233333331 1233555554333333332
Q ss_pred CCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC
Q 005493 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (694)
Q Consensus 242 ~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~ 321 (694)
..-.-||.+ ...+++ -.++|-.++ ..+-+||..+..-..+.. +.++.....+.-+++..+++-...
T Consensus 358 --~~~~VrY~r--~~~~~e-~~vigt~dg----D~l~iyd~~~~e~kr~e~----~lg~I~av~vs~dGK~~vvaNdr~- 423 (668)
T COG4946 358 --KKGGVRYRR--IQVDPE-GDVIGTNDG----DKLGIYDKDGGEVKRIEK----DLGNIEAVKVSPDGKKVVVANDRF- 423 (668)
T ss_pred --CCCceEEEE--EccCCc-ceEEeccCC----ceEEEEecCCceEEEeeC----CccceEEEEEcCCCcEEEEEcCce-
Confidence 111233333 233344 466665544 258899999988777653 455555555555777777765443
Q ss_pred CCcCeEEEEECCCCcEEEee
Q 005493 322 KRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 322 ~~~~~v~~yd~~t~~W~~l~ 341 (694)
++|++|+.++.-+.+.
T Consensus 424 ----el~vididngnv~~id 439 (668)
T COG4946 424 ----ELWVIDIDNGNVRLID 439 (668)
T ss_pred ----EEEEEEecCCCeeEec
Confidence 5999999998887764
No 410
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=49.72 E-value=1.2e+02 Score=30.88 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHH----HHHHHHHHHHHHHHHHHHHhhh--hHhHhhhcccccccccC
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQE----MEKKLADSLKEMELLKEKLAGL--ELAQEEANSLSNIVHSD 651 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~----~e~~~~~~~~~~~~l~~k~~~~--~~~~e~~~~~~~~~~~~ 651 (694)
+.|.+..+-..|..-..+--+.|+.|.+-|...+. ++...+..+.|+|-+|+|...- +-+|-++
T Consensus 25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s---------- 94 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQES---------- 94 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34444444444444444445555555554422221 1222233445566666665432 1111111
Q ss_pred CccchhhHHHHHHHHhhhhh
Q 005493 652 NVRLEHDVAFLKAVLDDTQK 671 (694)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~ 671 (694)
-||.|++-++|+-+..+|
T Consensus 95 --~Leddlsqt~aikeql~k 112 (333)
T KOG1853|consen 95 --QLEDDLSQTHAIKEQLRK 112 (333)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 367788888887777666
No 411
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=49.64 E-value=1.1e+02 Score=29.79 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.6
Q ss_pred hhhHHHH
Q 005493 601 KNFSSVL 607 (694)
Q Consensus 601 ~~~~~~~ 607 (694)
|.|+++-
T Consensus 123 kklnslk 129 (203)
T KOG3433|consen 123 KKLNSLK 129 (203)
T ss_pred HHHHHHH
Confidence 3333333
No 412
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=49.63 E-value=4.3e+02 Score=29.82 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=75.0
Q ss_pred cCcEEEEECCCCcEEEcccccccC--CCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeee
Q 005493 113 LDDVQVLNFDRFSWTAASSKLYLS--PSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (694)
Q Consensus 113 ~~~v~~yd~~t~~W~~~~~~~~~~--p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (694)
..++|.|||.+.+-+.+....... +.-...-.|..+.--.+..++..|++-- ...++++++..+---.+..
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv~~ 358 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQVGK 358 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEcCC
Confidence 358999999999888776421000 0000000111111112222333333311 1245555543332222221
Q ss_pred cCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCC
Q 005493 191 KGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 270 (694)
Q Consensus 191 ~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~ 270 (694)
.-.-|+.+ ...++.-.++|-.++ +.+.+||..+..-+++. .+.++.....+.-+++ .++.+..
T Consensus 359 ---~~~VrY~r--~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK-~~vvaNd-- 421 (668)
T COG4946 359 ---KGGVRYRR--IQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGK-KVVVAND-- 421 (668)
T ss_pred ---CCceEEEE--EccCCcceEEeccCC-----ceEEEEecCCceEEEee----CCccceEEEEEcCCCc-EEEEEcC--
Confidence 11123322 223455778876554 35889999998877774 2334443333333445 3444432
Q ss_pred CCCCCeEEEEEcCCCcEEEee
Q 005493 271 SKTLNDLYSLDFETMIWTRIK 291 (694)
Q Consensus 271 ~~~~~dv~~yd~~t~~W~~l~ 291 (694)
.-++|.+|++++.-+.+.
T Consensus 422 ---r~el~vididngnv~~id 439 (668)
T COG4946 422 ---RFELWVIDIDNGNVRLID 439 (668)
T ss_pred ---ceEEEEEEecCCCeeEec
Confidence 236899999998877664
No 413
>PRK10115 protease 2; Provisional
Probab=49.50 E-value=5.3e+02 Score=30.85 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=70.7
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEEECC-CCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEe
Q 005493 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF 229 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 229 (694)
.....++.+|+.--.. .....+...++. ...|+.+-+. ...+.--.+...++.|++..=.++ ...++++
T Consensus 274 ~~~~~~~~ly~~tn~~---~~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~g----~~~l~~~ 343 (686)
T PRK10115 274 SLDHYQHRFYLRSNRH---GKNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQRG----LTSLRQI 343 (686)
T ss_pred EEEeCCCEEEEEEcCC---CCCceEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeCC----EEEEEEE
Confidence 3345568888875432 223457888877 6789887631 112222334445777777654332 3558889
Q ss_pred eCCCCcEEEcccCCCCCCCcceeEEEE---EC-CcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeecc
Q 005493 230 DLKSLTWLPLHCTGTGPSPRSNHVAAL---YD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 293 (694)
Q Consensus 230 d~~t~~W~~l~~~g~~P~~R~~hs~~~---~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~ 293 (694)
|+.+.....+. ++.+.....+.. .+ +..++.+.+ .....++|.||+.+++|+.+...
T Consensus 344 ~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~ss---~~~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 344 NRKTREVIGIA----FDDPAYVTWIAYNPEPETSRLRYGYSS---MTTPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred cCCCCceEEec----CCCCceEeeecccCCCCCceEEEEEec---CCCCCEEEEEECCCCcEEEEEec
Confidence 88766665553 222333211111 11 222333333 23457899999999999888753
No 414
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.48 E-value=97 Score=35.18 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=40.7
Q ss_pred hhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
|...|+++|.+|+.+....+.....--..-+..-+.|..+-++|+.++..|..+...+..|++.|..-+
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999888866665554433444444444555555555555555555555555555544443
No 415
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.33 E-value=72 Score=39.50 Aligned_cols=45 Identities=22% Similarity=0.126 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEME 614 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e 614 (694)
.++.++..+.++-+-|+.|+..+...++++||-.+.+-.+++++.
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~ 446 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQ 446 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHH
Confidence 344556668888889999999999999999998887644443333
No 416
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.08 E-value=45 Score=39.51 Aligned_cols=21 Identities=10% Similarity=-0.221 Sum_probs=11.8
Q ss_pred ccchhhHHHHHHHHhhhhhhh
Q 005493 653 VRLEHDVAFLKAVLDDTQKVN 673 (694)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~ 673 (694)
-+++.+...|++-..+.+|||
T Consensus 740 ~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 740 NAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666665
No 417
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.02 E-value=1.1e+02 Score=34.04 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=22.9
Q ss_pred hhhHHHHHHHH-hhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHH
Q 005493 570 FYESKMAALIR-KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL 621 (694)
Q Consensus 570 ~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~ 621 (694)
+||..+..+.| .-.-.++++..+++...+.+.+.+-+.+.++-+|.|++...
T Consensus 336 y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q 388 (493)
T KOG0804|consen 336 YYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQ 388 (493)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444 22223333444444444444444444445555555554433
No 418
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.73 E-value=1.5e+02 Score=30.54 Aligned_cols=17 Identities=47% Similarity=0.493 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhHhHhhh
Q 005493 625 ELLKEKLAGLELAQEEA 641 (694)
Q Consensus 625 ~~l~~k~~~~~~~~e~~ 641 (694)
+.|+..+..+|...|++
T Consensus 180 ~~~~~ev~~~e~kve~a 196 (243)
T cd07666 180 DLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555555
No 419
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.71 E-value=1.3e+02 Score=30.30 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=14.3
Q ss_pred HHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005493 592 ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKE 629 (694)
Q Consensus 592 ~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~ 629 (694)
.....++++.....+-....+++.|+...-...+.|+.
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444433333333333
No 420
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=48.55 E-value=98 Score=27.45 Aligned_cols=93 Identities=20% Similarity=0.243 Sum_probs=40.9
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhh--------cccc
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA--------NSLS 645 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~--------~~~~ 645 (694)
.+.++-+....+.++|.++....-++-..-.....+-+++.++...-.. -+.++.+|..++..-+.+ |-++
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666665555444443333333333333333322111 122333333222221111 3466
Q ss_pred cccccCCccchhhHHHHHHHHh
Q 005493 646 NIVHSDNVRLEHDVAFLKAVLD 667 (694)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
+||..-.|.-=.|=+.---|||
T Consensus 83 ~lI~gSgVdWa~D~~L~~lVL~ 104 (106)
T PF05837_consen 83 ALIVGSGVDWAEDPKLRELVLD 104 (106)
T ss_pred HHHHhcCCCcccCHHHHHHHhc
Confidence 6666666665555555444444
No 421
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=48.51 E-value=7.3 Score=30.32 Aligned_cols=33 Identities=39% Similarity=0.500 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHh
Q 005493 621 LKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLD 667 (694)
Q Consensus 621 ~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
-+|+|-||+++++++. .|-.||.|-.+||.-..
T Consensus 13 rEEVevLK~~I~eL~~--------------~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 13 REEVEVLKEQIAELEE--------------RNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TTSHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcCC
Confidence 4688999999999874 35568888888887654
No 422
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=48.46 E-value=37 Score=25.51 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNF 603 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~ 603 (694)
.++.+....|+ .|.++|++.++++|+.|+.+
T Consensus 16 ~FQ~~v~~~lq---~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 16 AFQNKVTSALQ---SLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 34455555665 47778888888888888764
No 423
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.45 E-value=1.4e+02 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=12.0
Q ss_pred cchhhHHHHHHHHhhhhhhhhhhh
Q 005493 654 RLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
-|-+|-.-.++-+++.++++...+
T Consensus 142 ~ll~Dy~~~~~~~~~l~~~i~~l~ 165 (177)
T PF13870_consen 142 ALLRDYDKTKEEVEELRKEIKELE 165 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454445555555555555444
No 424
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=48.37 E-value=1.2e+02 Score=28.17 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=10.4
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHH
Q 005493 584 ILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
...+.|+.|...+++|++.+...
T Consensus 30 ~I~~~l~~A~~~~~ea~~~~~e~ 52 (147)
T TIGR01144 30 KIADGLASAERAKKEAALAQKKA 52 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 425
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.31 E-value=1.3e+02 Score=31.72 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=8.0
Q ss_pred hhhHHHHHHHhhHHHHhhhhHH
Q 005493 584 ILEGQLAAALVNREAAEKNFSS 605 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~ 605 (694)
.++..+-.+-..+.+.||.+..
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~ 208 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEE 208 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444443
No 426
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=48.29 E-value=1.5e+02 Score=31.99 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=64.5
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc-----cc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL-----SN 646 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~-----~~ 646 (694)
...+..++.+...+++|++.-...++..+..|-.=...-+++-+ .-.+.+..|...++..+...++.+.- ..
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~---~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~ 159 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYE---KNWEYYQELEKYIAAGELKLEELEAELLPALQA 159 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 46888899999999999999998888877666543333333322 22344455555555544444443321 11
Q ss_pred ccccCCccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 647 IVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
-.- +|.-...+++-+..+++-..|.+|-...
T Consensus 160 ~~~-~d~~~~q~~~~~~~~l~~leqRi~DL~~ 190 (333)
T PF05816_consen 160 DAE-GDQMDAQELADLEQALFRLEQRIQDLQL 190 (333)
T ss_pred ccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 4555667888888888888888776543
No 427
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=48.22 E-value=1.3e+02 Score=24.74 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhHHHH-hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 585 LEGQLAAALVNREAA-EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 585 l~~~l~~~~~~~~~~-e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
||.||--|+-.+++. +|+...--.+...+...+...-++-..|+++++.+.+
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~ 56 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQ 56 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 566666666555543 5555555555666666666666666666666665543
No 428
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=48.20 E-value=37 Score=35.98 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhH----hhhccccccccc
Q 005493 611 QEMEKKLADSLKEMELLKEKLAGLELAQ----EEANSLSNIVHS 650 (694)
Q Consensus 611 ~~~e~~~~~~~~~~~~l~~k~~~~~~~~----e~~~~~~~~~~~ 650 (694)
-++||.+.....|.|-|+.++...|.-| ||-.+|..||..
T Consensus 241 aqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkd 284 (561)
T KOG1103|consen 241 AQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKD 284 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3666666666667777777666666544 555566666543
No 429
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.19 E-value=30 Score=31.20 Aligned_cols=30 Identities=40% Similarity=0.511 Sum_probs=16.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
+++.+.+.+.|+..+++.++|++.||.+|+
T Consensus 9 ~~~ye~~kaEL~elikkrqe~eetl~nLe~ 38 (135)
T KOG3856|consen 9 LKSYEDTKAELAELIKKRQELEETLANLER 38 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555553
No 430
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=48.19 E-value=90 Score=30.35 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 627 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l 627 (694)
.-++++.++|+..-+.|+..+..........|.....++++|++..+-+.....++|.-
T Consensus 34 ~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~ 92 (228)
T PRK06800 34 EEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAA 92 (228)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777766666666666666677777777777766666555554443
No 431
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.15 E-value=4.5e+02 Score=29.59 Aligned_cols=135 Identities=13% Similarity=0.188 Sum_probs=67.2
Q ss_pred EEEEEECCCCc--EEEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 174 SVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 174 ~v~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
.+.+||...+. -+.+. ..+... ++++.. .+.+++.|+.+. .|.++|+.+.+-...- +.-..
T Consensus 226 tiriwd~~~~~~~~~~l~---gH~~~v--~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~l-----~~hs~ 289 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLK---GHSTYV--TSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRKL-----KGHSD 289 (456)
T ss_pred eEEEeeccCCCeEEEEec---CCCCce--EEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEee-----eccCC
Confidence 78888884442 22222 233333 333333 458999998764 4888888885544332 11111
Q ss_pred eeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEE--EeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeE
Q 005493 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAET 327 (694)
Q Consensus 251 ~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~--~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v 327 (694)
.-+++.. .+..+++.+.+++ .+.+||+.++.-. ...... ..+.....+....+..|++-+.... .+
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~fsp~~~~ll~~~~d~----~~ 358 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDG-----TIRVWDLETGSKLCLKLLSGA--ENSAPVTSVQFSPNGKYLLSASLDR----TL 358 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCc-----cEEEEECCCCceeeeecccCC--CCCCceeEEEECCCCcEEEEecCCC----eE
Confidence 1122222 2333666665543 4889998887732 221111 1121222223334555555554432 35
Q ss_pred EEEECCCC
Q 005493 328 LIFDILKG 335 (694)
Q Consensus 328 ~~yd~~t~ 335 (694)
-.||+...
T Consensus 359 ~~w~l~~~ 366 (456)
T KOG0266|consen 359 KLWDLRSG 366 (456)
T ss_pred EEEEccCC
Confidence 56666654
No 432
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.12 E-value=73 Score=34.56 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKVNCSYYTQLMHE 683 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (694)
+.|++...-.|++.++.|.+....=+.|
T Consensus 81 ~~~L~~a~P~L~~A~~al~~l~k~di~E 108 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEALKSLDKSDISE 108 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5777777777888887777655544444
No 433
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=48.12 E-value=49 Score=29.81 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=24.2
Q ss_pred HhhHHHHhhhhHHHHhhHHHHHHHHHH
Q 005493 593 LVNREAAEKNFSSVLKSRQEMEKKLAD 619 (694)
Q Consensus 593 ~~~~~~~e~~~~~~~~~~~~~e~~~~~ 619 (694)
-++.|+|+......|++...|+++++.
T Consensus 30 ~~L~e~A~qh~~~Il~eye~mk~~~~~ 56 (125)
T PF13256_consen 30 DTLKEQAEQHKEQILHEYEGMKKKVKV 56 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999875
No 434
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.85 E-value=78 Score=38.08 Aligned_cols=64 Identities=25% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
+++..-++-+-|..||+.+..++.++|-++...-.+++.++.++.++..|.+.|..|+..+|.+
T Consensus 625 qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 625 QLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444445566777777777777777777777777777777777777888888887777655
No 435
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=47.74 E-value=1e+02 Score=24.95 Aligned_cols=54 Identities=30% Similarity=0.384 Sum_probs=40.4
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHH---Hhh-HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 583 GILEGQLAAALVNREAAEKNFSSV---LKS-RQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~---~~~-~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
+.|..+|+--++.++-||+=+... -+. +++++.++....+.++.|+.+|..+..
T Consensus 4 ~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 4 EELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777788888777654 123 778999999999999999999887653
No 436
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=47.72 E-value=55 Score=28.99 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHhhhh
Q 005493 656 EHDVAFLKAVLDDTQ 670 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~ 670 (694)
..||+=.|+|.||--
T Consensus 60 k~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 60 KADVSEMKPVTDDVK 74 (112)
T ss_pred HhhHHhccchHHHHH
Confidence 445555666766653
No 437
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=47.64 E-value=1.4e+02 Score=33.06 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH-----------HHHhhhhHhHhhhcccccccccCCc------cchhhHHHHHHHHhhh
Q 005493 607 LKSRQEMEKKLADSLKEMELLK-----------EKLAGLELAQEEANSLSNIVHSDNV------RLEHDVAFLKAVLDDT 669 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~-----------~k~~~~~~~~e~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 669 (694)
.+-|++||-.|..+.+|+..++ .|.+.+.+||--..+=.+=++-++. +|-.||..|+..++..
T Consensus 257 ~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L 336 (384)
T PF03148_consen 257 QEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEAL 336 (384)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444444333 4444444555444444444444443 3556777777777666
Q ss_pred hhhhhhhhh
Q 005493 670 QKVNCSYYT 678 (694)
Q Consensus 670 ~~~~~~~~~ 678 (694)
|..|.....
T Consensus 337 ~~~L~~a~~ 345 (384)
T PF03148_consen 337 QEKLDEAEA 345 (384)
T ss_pred HHHHHHHHH
Confidence 666655443
No 438
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=47.57 E-value=58 Score=32.05 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=15.7
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 597 ~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
-|||..++-+...-..+|-+..+....+..+|.|++..|
T Consensus 181 Lqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e 219 (259)
T KOG4001|consen 181 LQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDE 219 (259)
T ss_pred HHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555544433333333333333333333444444333
No 439
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=47.51 E-value=1.1e+02 Score=27.73 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAE 600 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e 600 (694)
..=-+.+-+..+...|++.|..|.+.+|-.|
T Consensus 20 q~iN~Fsrl~~R~~~lk~dik~~k~~~enle 50 (131)
T KOG1760|consen 20 QNINEFSRLNSRKDDLKADIKEAKTEIENLE 50 (131)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666666666665555544433
No 440
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=47.38 E-value=63 Score=27.06 Aligned_cols=42 Identities=36% Similarity=0.491 Sum_probs=26.3
Q ss_pred hHHHHhhhhHHH---------HhhHHHHHHHHHH---HHHHHHHHHHHHhhhhH
Q 005493 595 NREAAEKNFSSV---------LKSRQEMEKKLAD---SLKEMELLKEKLAGLEL 636 (694)
Q Consensus 595 ~~~~~e~~~~~~---------~~~~~~~e~~~~~---~~~~~~~l~~k~~~~~~ 636 (694)
.++++|+++-.. |=+|+|.|...+. +-...+.|+.||+.+|.
T Consensus 25 ~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 25 PREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555554 3357777766554 44467888888888873
No 441
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.36 E-value=72 Score=32.92 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=21.9
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHH
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVL 607 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~ 607 (694)
+-++-..|+++|+...++.+..|+||+.+.
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455677777888888888888888874
No 442
>PRK11519 tyrosine kinase; Provisional
Probab=47.33 E-value=82 Score=37.86 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhh
Q 005493 612 EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 612 ~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
.+..+.+.+.++.+.++.+++.+-..|-|+ .+||+|+..-++..+..-+.+..++
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~-----------~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 343 TLLEKRKALEDEKAKLNGRVTAMPKTQQEI-----------VRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666666665555444 3678888888888776644444433
No 443
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=47.27 E-value=4.2e+02 Score=29.00 Aligned_cols=215 Identities=12% Similarity=0.132 Sum_probs=104.2
Q ss_pred cCcEEEEECCCCc-EEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEccccCCCCCccEEEEEECCCCcEEEe
Q 005493 113 LDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (694)
Q Consensus 113 ~~~v~~yd~~t~~-W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~---~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 188 (694)
.+.+.++|..+++ -..++.. . ..|....+ +.++|+.+. . ..+..+|+.+.+-..-
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~-------------~-~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~~v~~ 73 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG-------------G-APHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGKVVAT 73 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S-------------T-TEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSSEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCC-------------C-CceeEEEecCCCCEEEEEcC-C------CeEEEEECCcccEEEE
Confidence 3578888988864 3444431 1 12444433 467898853 1 2799999999883221
Q ss_pred eecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCC----CCCcceeEEEEECCcEEE
Q 005493 189 EAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG----PSPRSNHVAALYDDKNLL 263 (694)
Q Consensus 189 ~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~----P~~R~~hs~~~~~~~~ly 263 (694)
.+.......+++ .++++++.+.+. .+.+.++|..+.+=.+.-+.+.+ +.+|...-....... .|
T Consensus 74 -----i~~G~~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~f 142 (369)
T PF02239_consen 74 -----IKVGGNPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EF 142 (369)
T ss_dssp -----EE-SSEEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EE
T ss_pred -----EecCCCcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EE
Confidence 344444445444 356666655443 35688999887653332211222 334442222222333 45
Q ss_pred EEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEEC-CEEEEEcCCCCCCCcCeEEEEECCCCcEEEeec
Q 005493 264 IFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (694)
Q Consensus 264 v~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~-~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~ 342 (694)
|+--.. ..++|..|.....=..... ...++.-|-+.... ++.|+.+-.. .+.+-++|.+++.-..+..
T Consensus 143 Vv~lkd----~~~I~vVdy~d~~~~~~~~---i~~g~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 143 VVNLKD----TGEIWVVDYSDPKNLKVTT---IKVGRFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEETT----TTEEEEEETTTSSCEEEEE---EE--TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEEEE
T ss_pred EEEEcc----CCeEEEEEeccccccceee---ecccccccccccCcccceeeecccc----cceeEEEeeccceEEEEee
Confidence 553222 3578999876542111111 13456666665553 3444443222 2478899998876554332
Q ss_pred CCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 343 ~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
. ...|.+..+. -+.|.+.+.++..+|..
T Consensus 212 ~-g~~p~~~~~~---~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 212 T-GKKPHPGPGA---NFPHPGFGPVWATSGLG 239 (369)
T ss_dssp --SSSBEETTEE---EEEETTTEEEEEEEBSS
T ss_pred c-cccccccccc---cccCCCcceEEeecccc
Confidence 1 2223222222 23455555666666653
No 444
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.23 E-value=69 Score=33.27 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=22.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 604 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 604 ~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
..+-..|+..++++.....|++.++++|+..|.
T Consensus 189 ~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Ek 221 (269)
T PF05278_consen 189 ETREEEKEEKDRKLELKKEELEELEEELKQKEK 221 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777766654
No 445
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=46.94 E-value=1.9e+02 Score=26.60 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA 618 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~ 618 (694)
.-|.+.++|+++... +-..-.+..|.|+++|....+-+++.+++++
T Consensus 31 ~LEae~q~L~~kE~~---r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 31 QLEAEYQQLEQKEEA---RYNEEKQEAEAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555555554422 2222334556666666666555555555554
No 446
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=46.91 E-value=1e+02 Score=27.84 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=42.1
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHH----hhHHHHHHHHHHHHHHHHHHHHHHhhhh---HhHhhhcccccccccCCccch
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVL----KSRQEMEKKLADSLKEMELLKEKLAGLE---LAQEEANSLSNIVHSDNVRLE 656 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~----~~~~~~e~~~~~~~~~~~~l~~k~~~~~---~~~e~~~~~~~~~~~~~~~~~ 656 (694)
+|++|.+....+++..++..+.+. ..-+.+-++++....+.+.++++..... ..+.+-..++-++. +.-.|-
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~-~~~~l~ 87 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIE-EREELQ 87 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHh-ccHHHH
Confidence 455555556666666666555551 1122222222222222222222222221 11123344555555 333333
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhh
Q 005493 657 HDVAFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
.-..-|+..+.+.+.....++..+
T Consensus 88 ~~~~~l~~~~~~~~~~n~~N~~ll 111 (143)
T PF05130_consen 88 ALWRELRELLEELQELNERNQQLL 111 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666665555544
No 447
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.90 E-value=1.3e+02 Score=34.57 Aligned_cols=70 Identities=33% Similarity=0.368 Sum_probs=40.5
Q ss_pred hhhhHHHHHH---HHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 005493 569 QFYESKMAAL---IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (694)
Q Consensus 569 ~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~ 638 (694)
..|..-++.| -++-..+.++++.++..+..|.++-..+...-+..++++.+...++..||+-|-.+..+-
T Consensus 123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~ 195 (522)
T PF05701_consen 123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAH 195 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 234445566677777777777766666666666666666666666666665555544433
No 448
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.84 E-value=64 Score=30.80 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005493 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 628 (694)
Q Consensus 575 ~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~ 628 (694)
...+..++..|+.+++......+++|+.+..+ ++++..+.+||+.|-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L-------~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKL-------RQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 44556667777777776666666666665444 555555556665553
No 449
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=46.82 E-value=1.3e+02 Score=31.25 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhh----hHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005493 622 KEMELLKEKLAGL----ELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFL 685 (694)
Q Consensus 622 ~~~~~l~~k~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (694)
++.++++.|+... +.+.++|.+-=+.....+.+-+.| ++.+++..| +|+..|-.++.+.+
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~---m~~~~~~~Q-~lEe~Ri~~lk~~l 231 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMED---MEQVFDKCQ-EFEEKRLDFFKEIL 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5666666665544 555566655434344444445555 445555555 34555555554443
No 450
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=46.78 E-value=2.2e+02 Score=27.57 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhh--------hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEK--------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~--------~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
.++..+=-++.+|.-||..+...+++-|- |+..+--+.+++.+|+....+|...||.+.+..-.+ .+..
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~---L~h~ 82 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQI---LTHV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34444444555555565555444443332 333445566667777776666666666555432111 0000
Q ss_pred ccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005493 645 SNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFL 685 (694)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (694)
..-.| -+..+.+++++-|.+.++++...|..|.....
T Consensus 83 keKl~----~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~ 119 (177)
T PF13870_consen 83 KEKLH----FLSEELERLKQELKDREEELAKLREELYRVKK 119 (177)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011 13456777777777777777777777665443
No 451
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.57 E-value=1.6e+02 Score=35.77 Aligned_cols=104 Identities=19% Similarity=0.068 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh-hHhHhhhccccccccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL-ELAQEEANSLSNIVHS 650 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~-~~~~e~~~~~~~~~~~ 650 (694)
+.=..-+-.+...++.=|....+.+.++|+.+..+-+.++++|+..+...++.+.|+++-... ++|++|++
T Consensus 505 ~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~-------- 576 (782)
T PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ-------- 576 (782)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred CCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q 005493 651 DNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDEL 689 (694)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (694)
.-++-.|+-.++.-++|...+.....+...+++
T Consensus 577 ------~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~ 609 (782)
T PRK00409 577 ------QAIKEAKKEADEIIKELRQLQKGGYASVKAHEL 609 (782)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhhcccchhhHHHH
No 452
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.50 E-value=79 Score=28.35 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=35.4
Q ss_pred HHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 577 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 577 ~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
++......||+||..-++..++..+.+..++++-+.|+ -|-+.|+++|+.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~-------iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALR-------LENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 45556667788888888888877777777765555443 3567788888765
No 453
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.45 E-value=92 Score=37.76 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL 621 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~ 621 (694)
..+.-+..|.++...+|+++..+.+.++++|+.+..+-+.+++++++...+.
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666667777777777777777776666666666666555433
No 454
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=46.32 E-value=7.2e+02 Score=31.48 Aligned_cols=260 Identities=11% Similarity=0.024 Sum_probs=125.9
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCc-cceEEEEE--CCEEEEEccccCCCCCccE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC-RGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r-~~~s~v~~--~~~Iyv~GG~~~~~~~~~~ 174 (694)
++.|||.-- ..+.+.++|+....-..+...+.......+...... .-+.+++. ++.|||.-..+ +.
T Consensus 579 ~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n------~~ 647 (1057)
T PLN02919 579 NNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN------HA 647 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC------ce
Confidence 577888732 235788999876533333321110000000000011 11344443 46788874321 36
Q ss_pred EEEEECCCCcEEEeeecCCCC------------CcceeeEEEEE--CCeEEEEccccCCCccccceEEeeCCCCcEEEcc
Q 005493 175 VWTFDTETECWSVVEAKGDIP------------VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (694)
Q Consensus 175 v~~yd~~t~~W~~~~~~g~~p------------~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~ 240 (694)
+.++|+.++.-+.+...|... .-...+.+++. ++.+||... ..+.+++||+.+.....+.
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~------~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA------GQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC------CCCeEEEEECCCCeEEEEe
Confidence 888999887766554322100 01112234443 568888743 2356899998777655443
Q ss_pred cCCC-------CCC---CcceeEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccC-CCCC----------
Q 005493 241 CTGT-------GPS---PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-FHPS---------- 298 (694)
Q Consensus 241 ~~g~-------~P~---~R~~hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~-~~p~---------- 298 (694)
..|. .+. ...-+.+++.. +..|||....+ +.|.+||+.++..+.+.... ..+.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 2111 000 01112344443 34578765433 56999999876644332100 0000
Q ss_pred ----CCc--ceEEEE-ECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCC------CCCCCc-CcEEEEEeecCC
Q 005493 299 ----PRA--GCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SVTSNK-GFTLVLVQHKEK 364 (694)
Q Consensus 299 ----~R~--~~sav~-~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~------~p~~r~-~~s~~~v~~~~~ 364 (694)
... -.++++ -++.+||....+. .+.+||+.+.....+...... ...... .-..+.+...
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~-----rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d-- 869 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNH-----KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN-- 869 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCC-----EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC--
Confidence 000 112222 2567898876543 599999998887765421110 000111 1222333322
Q ss_pred cEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 365 DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 365 ~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+.+||.-.. .+.|.++|+.+.+
T Consensus 870 G~lyVaDt~----Nn~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVADTN----NSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEECC----CCEEEEEECCCCc
Confidence 346665433 3478888887765
No 455
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.25 E-value=1.2e+02 Score=39.34 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=29.4
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 580 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
.+--+...++..+.+..+.++..+..+-+.+.++++++....++.+.|++++..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 269 TRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555555555555555555555555555555555555555544
No 456
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=46.24 E-value=2e+02 Score=24.99 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=9.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhh
Q 005493 668 DTQKVNCSYYTQLMHEFLHDELA 690 (694)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~ 690 (694)
+.+.+-+.....-.-++.-||+|
T Consensus 97 e~~~~~~~~~~~r~Eq~~lDE~a 119 (123)
T PF02050_consen 97 ERRREEYQQEEERREQKELDEIA 119 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445554
No 457
>PRK12704 phosphodiesterase; Provisional
Probab=46.09 E-value=1.9e+02 Score=33.41 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=9.5
Q ss_pred hHHHHHHHHhhhhhhhhhhhh
Q 005493 658 DVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~ 678 (694)
++.-.++-|++.++++...+.
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555444444333
No 458
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=45.83 E-value=1.5e+02 Score=24.29 Aligned_cols=58 Identities=26% Similarity=0.268 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~ 633 (694)
...+.|--+++-++=.|.+||+ +..++||.+|=..+-+-.=++..+||...+++.|+.
T Consensus 11 ~~lQnEWDa~mLE~f~LRk~l~-------~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 11 STLQNEWDALMLENFTLRKQLD-------QTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 3444444455555555544443 334445555555555555555555555555555543
No 459
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=45.75 E-value=1.1e+02 Score=33.92 Aligned_cols=103 Identities=22% Similarity=0.182 Sum_probs=69.5
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhH----hhhc-
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ----EEAN- 642 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~----e~~~- 642 (694)
.-..+-|--+++-++=+|.|||+.+. +.||.+|=+++-+-.=.+..+||....+|-||.++.-- +|+-
T Consensus 73 L~~lQdEWDavML~~F~LRqqL~ttr-------QELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~ 145 (506)
T KOG0289|consen 73 LKTLQDEWDAVMLESFTLRQQLQTTR-------QELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVP 145 (506)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccc
Confidence 45566666778888889999998765 45888888888888888888888888888888776310 1111
Q ss_pred ccccccccCCcc---chhh-----HHHHHHHHhhhhhhhhhhhhhh
Q 005493 643 SLSNIVHSDNVR---LEHD-----VAFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 643 ~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
.+. -++++- -|.| -+-|++.|+|+=++|.+.|+..
T Consensus 146 ~~~---~~s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkr 188 (506)
T KOG0289|consen 146 SLA---QSSVVGVAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKR 188 (506)
T ss_pred ccc---ccchhhhhcCCccccccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 000 011221 1111 3568899999999999888764
No 460
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.64 E-value=65 Score=31.84 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=15.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhh
Q 005493 657 HDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~ 677 (694)
.-|.-|...|..-+-||++.|
T Consensus 174 ~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 174 EQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 347777788888888887654
No 461
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=45.57 E-value=3.2e+02 Score=27.38 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 005493 658 DVAFLKAVLDDTQKVNCSYYTQLMHEFLHDELA 690 (694)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (694)
...||+... ..+||++..+-+.++|+.|.||.
T Consensus 109 ~~qfl~EK~-~LEke~~e~~i~~l~e~a~~el~ 140 (206)
T PF14988_consen 109 ESQFLQEKA-RLEKEASELKILQLGERAHKELK 140 (206)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHhHHHhhHHHH
Confidence 356666553 34677766667788888888853
No 462
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=45.53 E-value=3.6e+02 Score=27.72 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=61.7
Q ss_pred ceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCc-EEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcce
Q 005493 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (694)
Q Consensus 225 ~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~ 303 (694)
.++.||..|++-.+-- .|-. + .--++.++.. .+++.|+++. .+..||......+.+... ...+.+.
T Consensus 82 ~v~vwDV~TGkv~Rr~-rgH~--a--qVNtV~fNeesSVv~SgsfD~-----s~r~wDCRS~s~ePiQil---dea~D~V 148 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRF-RGHL--A--QVNTVRFNEESSVVASGSFDS-----SVRLWDCRSRSFEPIQIL---DEAKDGV 148 (307)
T ss_pred eEEEEEcccCeeeeec-cccc--c--eeeEEEecCcceEEEeccccc-----eeEEEEcccCCCCccchh---hhhcCce
Confidence 4888999887633221 0000 0 0112334433 4666666653 488899888877777654 5677788
Q ss_pred EEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEE
Q 005493 304 CGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (694)
Q Consensus 304 sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~ 338 (694)
+.+.+.+..+|.|-.++. +..||+...+-.
T Consensus 149 ~Si~v~~heIvaGS~DGt-----vRtydiR~G~l~ 178 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDGT-----VRTYDIRKGTLS 178 (307)
T ss_pred eEEEecccEEEeeccCCc-----EEEEEeecceee
Confidence 888888888888877765 889998876654
No 463
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=45.41 E-value=1.7e+02 Score=27.34 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHhhchhhH
Q 005493 569 QFYESKMAALIRKNGILEG 587 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~ 587 (694)
+.|+.+++..+.+...+..
T Consensus 37 ~~R~~~I~~~l~~A~~~~~ 55 (141)
T PRK08476 37 DNRNASIKNDLEKVKTNSS 55 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555554444444333
No 464
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.40 E-value=2e+02 Score=29.89 Aligned_cols=51 Identities=25% Similarity=0.180 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhh
Q 005493 625 ELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 625 ~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (694)
..|++|=+.++.++|+.-.+.+--|..=..|+..++-+++++..+.-+..+
T Consensus 158 ~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 158 KSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443344444444444444433333333
No 465
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.39 E-value=1.7e+02 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=16.8
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHH
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSS 605 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~ 605 (694)
++++++.+.-.+.+++....+.+.+.|..+.-
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E 35 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKE 35 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444443
No 466
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.97 E-value=3.6e+02 Score=27.66 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=81.8
Q ss_pred EECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeE----EEEEC--CeEEEEccccCCCccccceE
Q 005493 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT----VVRAS--SVLILFGGEDGKRRKLNDLH 227 (694)
Q Consensus 154 ~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~----~~~~~--~~lyv~GG~~~~~~~~~~v~ 227 (694)
..++.-|..||-+ ..+..||..|++-.+.- .+|. ++.++ ..+++-|+++. ++-
T Consensus 68 s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr~---------rgH~aqVNtV~fNeesSVv~SgsfD~------s~r 126 (307)
T KOG0316|consen 68 SSDNSKFASCGGD------KAVQVWDVNTGKVDRRF---------RGHLAQVNTVRFNEESSVVASGSFDS------SVR 126 (307)
T ss_pred cccccccccCCCC------ceEEEEEcccCeeeeec---------ccccceeeEEEecCcceEEEeccccc------eeE
Confidence 3455556666543 26889999988753321 1121 22333 46777777653 477
Q ss_pred EeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE
Q 005493 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (694)
Q Consensus 228 ~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~ 307 (694)
.||..++....+. .+..++.+-..+.+.+. .+|.|-.++ .+-.||+..++-..=- .+ .|-. .....
T Consensus 127 ~wDCRS~s~ePiQ---ildea~D~V~Si~v~~h-eIvaGS~DG-----tvRtydiR~G~l~sDy-~g---~pit-~vs~s 192 (307)
T KOG0316|consen 127 LWDCRSRSFEPIQ---ILDEAKDGVSSIDVAEH-EIVAGSVDG-----TVRTYDIRKGTLSSDY-FG---HPIT-SVSFS 192 (307)
T ss_pred EEEcccCCCCccc---hhhhhcCceeEEEeccc-EEEeeccCC-----cEEEEEeecceeehhh-cC---Ccce-eEEec
Confidence 8888888877775 55667777777777777 555555444 3778998765533211 11 1111 11111
Q ss_pred ECCEEEEEcCCCCCCCcCeEEEEECCCCcE
Q 005493 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (694)
Q Consensus 308 ~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W 337 (694)
-++...++|-.+. .+..+|-.+.+-
T Consensus 193 ~d~nc~La~~l~s-----tlrLlDk~tGkl 217 (307)
T KOG0316|consen 193 KDGNCSLASSLDS-----TLRLLDKETGKL 217 (307)
T ss_pred CCCCEEEEeeccc-----eeeecccchhHH
Confidence 2445555554443 367777776553
No 467
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=44.89 E-value=2.5e+02 Score=25.97 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=14.5
Q ss_pred HHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHH
Q 005493 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLA 618 (694)
Q Consensus 587 ~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~ 618 (694)
++|.......++...+++.+..++++++..+.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 37 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASIN 37 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 468
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=44.86 E-value=41 Score=20.73 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005493 610 RQEMEKKLADSLKEMELLK 628 (694)
Q Consensus 610 ~~~~e~~~~~~~~~~~~l~ 628 (694)
|+++|.+++....+.+.+|
T Consensus 3 kk~lEa~~qkLe~e~q~~e 21 (21)
T PF02370_consen 3 KKQLEADHQKLEAEKQISE 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 5677777776666665543
No 469
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=44.74 E-value=74 Score=26.00 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 619 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~ 619 (694)
+.-.+-+....+.++|..|+=..++|-.=.+.++|+|+++.+-|+.
T Consensus 23 E~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 23 ENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 3345667778889999999999999999999999999999888875
No 470
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.74 E-value=6.2e+02 Score=30.28 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEEEC--CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEE
Q 005493 151 SLISWG--KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (694)
Q Consensus 151 s~v~~~--~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 228 (694)
..+.++ +.-+.||+. .+..+.+|+-.+....... .-...|.......-++.+++.|+.++. +-+
T Consensus 311 ~t~~~N~tGDWiA~g~~-----klgQLlVweWqsEsYVlKQ---QgH~~~i~~l~YSpDgq~iaTG~eDgK------VKv 376 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCS-----KLGQLLVWEWQSESYVLKQ---QGHSDRITSLAYSPDGQLIATGAEDGK------VKV 376 (893)
T ss_pred eEEEecccCCEEEEcCC-----ccceEEEEEeeccceeeec---cccccceeeEEECCCCcEEEeccCCCc------EEE
Q ss_pred eeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE
Q 005493 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (694)
Q Consensus 229 yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~ 308 (694)
||..+.-....- .-+..-.-.......++ .++..-.++. |-.+|+....--+--.. |.|+.+.+.++.
T Consensus 377 Wn~~SgfC~vTF---teHts~Vt~v~f~~~g~-~llssSLDGt-----VRAwDlkRYrNfRTft~---P~p~QfscvavD 444 (893)
T KOG0291|consen 377 WNTQSGFCFVTF---TEHTSGVTAVQFTARGN-VLLSSSLDGT-----VRAWDLKRYRNFRTFTS---PEPIQFSCVAVD 444 (893)
T ss_pred EeccCceEEEEe---ccCCCceEEEEEEecCC-EEEEeecCCe-----EEeeeecccceeeeecC---CCceeeeEEEEc
Q ss_pred -CCEEEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 309 -GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 309 -~~~iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
.+.+++.|+.+.- ++++++..++.
T Consensus 445 ~sGelV~AG~~d~F----~IfvWS~qTGq 469 (893)
T KOG0291|consen 445 PSGELVCAGAQDSF----EIFVWSVQTGQ 469 (893)
T ss_pred CCCCEEEeeccceE----EEEEEEeecCe
No 471
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.62 E-value=1.9e+02 Score=35.43 Aligned_cols=57 Identities=33% Similarity=0.405 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Q 005493 618 ADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDE 688 (694)
Q Consensus 618 ~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (694)
+..+++.|+||+.|..++ --+|-+.||.++=-||+.|+|.+.|+.--|.++ |.||.|
T Consensus 274 ~vLleekeMLeeQLq~lr------------arse~~tleseiiqlkqkl~dm~~erdtdr~kt--eeL~eE 330 (1195)
T KOG4643|consen 274 RVLLEEKEMLEEQLQKLR------------ARSEGATLESEIIQLKQKLDDMRSERDTDRHKT--EELHEE 330 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH------------hccccCChHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHH
Confidence 335667777777777775 234558899999999999999999887776654 344444
No 472
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.60 E-value=94 Score=35.38 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=33.2
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhh
Q 005493 603 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 603 ~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
+++|-.+-.|+|.|-+...-|++++..|+.++.+.-+. -.-|+.-||-+.+.+|..+...|
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~--------------~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQ--------------KQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555555566666666666666666665555432111 12355566666666665554443
No 473
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=44.44 E-value=1.6e+02 Score=29.49 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=50.4
Q ss_pred HhhHHHHHHHHH------HHHHHHHHHHHHHhhhhHhHhh-hcccccccccCCccchhhHHHHHH---HHhhhhhhhhhh
Q 005493 607 LKSRQEMEKKLA------DSLKEMELLKEKLAGLELAQEE-ANSLSNIVHSDNVRLEHDVAFLKA---VLDDTQKVNCSY 676 (694)
Q Consensus 607 ~~~~~~~e~~~~------~~~~~~~~l~~k~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 676 (694)
|++|..+|+.+. ...+.-..|+.|..++|.|=.. ...-+.-|..+|++|-.++..|.- .|.++.+.|..-
T Consensus 113 l~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~q 192 (206)
T PF14988_consen 113 LQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQ 192 (206)
T ss_pred HHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766551 1223334566777777765433 445788899999999999888753 566666666666
Q ss_pred hhhhhhh
Q 005493 677 YTQLMHE 683 (694)
Q Consensus 677 ~~~~~~~ 683 (694)
...|-.|
T Consensus 193 k~~L~~e 199 (206)
T PF14988_consen 193 KQQLQQE 199 (206)
T ss_pred HHHHHHH
Confidence 6655544
No 474
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=44.42 E-value=26 Score=27.78 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=11.8
Q ss_pred HhhchhhHHHHHHHhhHHHHhhhh
Q 005493 580 RKNGILEGQLAAALVNREAAEKNF 603 (694)
Q Consensus 580 ~~~~~l~~~l~~~~~~~~~~e~~~ 603 (694)
+|-+.||++|.+|.....+||++.
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443
No 475
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=44.39 E-value=3.2e+02 Score=28.74 Aligned_cols=143 Identities=12% Similarity=0.119 Sum_probs=85.6
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccce
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDL 226 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v 226 (694)
..-+....+++.+++|+.. ++..-|-...+|...- .+..|+.+..+. .+.+-++.|= -+.+
T Consensus 46 l~ia~~~~g~~gwlVg~rg-------tiletdd~g~tw~qal----~~~gr~~f~sv~f~~~egw~vGe-------~sql 107 (339)
T COG4447 46 LDIAFTESGSHGWLVGGRG-------TILETDDGGITWAQAL----DFLGRHAFHSVSFLGMEGWIVGE-------PSQL 107 (339)
T ss_pred cceeEeecCcceEEEcCcc-------eEEEecCCcccchhhh----chhhhhheeeeeeecccccccCC-------cceE
Confidence 3455566688999999875 5666777788998764 455566655554 3444555541 2335
Q ss_pred EEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEE
Q 005493 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (694)
Q Consensus 227 ~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav 306 (694)
+.-+-.-.+|.+++..-.+|.+ -.++..+++++-+++|-+. .|+.-+-....|+.+..... +..-..-.+.
T Consensus 108 l~T~DgGqsWARi~~~e~~eg~--~~sI~f~d~q~g~m~gd~G------ail~T~DgGk~Wk~l~e~~v-~~~~~n~ia~ 178 (339)
T COG4447 108 LHTTDGGQSWARIPLSEKLEGF--PDSITFLDDQRGEMLGDQG------AILKTTDGGKNWKALVEKAV-GLAVPNEIAR 178 (339)
T ss_pred EEecCCCcchhhchhhcCCCCC--cceeEEecchhhhhhcccc------eEEEecCCcccHhHhccccc-chhhhhhhhh
Confidence 5555556789998754334433 3456677777677777533 36666666788998866422 2111112223
Q ss_pred EECCEEEEEcC
Q 005493 307 LCGTKWYIAGG 317 (694)
Q Consensus 307 ~~~~~iyV~GG 317 (694)
..++..+++|-
T Consensus 179 s~dng~vaVg~ 189 (339)
T COG4447 179 SADNGYVAVGA 189 (339)
T ss_pred hccCCeEEEec
Confidence 34566666664
No 476
>PRK01156 chromosome segregation protein; Provisional
Probab=44.30 E-value=1.1e+02 Score=37.63 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHH---HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccccc
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN 646 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~---~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~ 646 (694)
+.+.-..++.++......++..++.+..+ .+...++++++..+.++...|++++..+....+++..|.+
T Consensus 216 l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~ele~~l~el~~~~~el~~~~~~~~~l~~ 287 (895)
T PRK01156 216 TLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIN 287 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333344444444444444444333333 4555555555555555555555555555555555555443
No 477
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=44.28 E-value=29 Score=29.89 Aligned_cols=49 Identities=27% Similarity=0.221 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhh
Q 005493 610 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHD 658 (694)
Q Consensus 610 ~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 658 (694)
.++||+++....+..++|++-|...+.+|+.+..|.+--+|.+=+--+|
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e 50 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYE 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHH
Confidence 4789999999999999999999999999999999998888876654444
No 478
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.27 E-value=1e+02 Score=35.49 Aligned_cols=100 Identities=25% Similarity=0.263 Sum_probs=61.9
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHHHhh-------HHHHHHHHHHH---HHHHHH-HHHHHhhhhHhHhhhcccccccccCC
Q 005493 584 ILEGQLAAALVNREAAEKNFSSVLKS-------RQEMEKKLADS---LKEMEL-LKEKLAGLELAQEEANSLSNIVHSDN 652 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~~~~-------~~~~e~~~~~~---~~~~~~-l~~k~~~~~~~~e~~~~~~~~~~~~~ 652 (694)
-+...|+.|+..+++|-..+...+++ -+++|.+|..+ .|.|-- +.+=++-.++.++|.++|.|.--+ =
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~-~ 344 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEES-L 344 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhH-H
Confidence 34455666666666666666665433 34455555432 222221 222333445555666666554321 2
Q ss_pred ccchhhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 005493 653 VRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEF 684 (694)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (694)
-.||++++-|++-++..=++|+..|...|.++
T Consensus 345 ~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L 376 (557)
T COG0497 345 EALEKEVKKLKAELLEAAEALSAIRKKAAKEL 376 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999888754
No 479
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.27 E-value=1.3e+02 Score=30.61 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=51.3
Q ss_pred hhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhh
Q 005493 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKV 672 (694)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (694)
..+++-+|....++.+|....+-|.+|..|+..|+--+..++.+.++.-. .+ .|+..|+.-||--.|+.-+|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~---~i----~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQE---KI----QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888888888888888888888877777755554332 22 45666777777777777666
No 480
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.26 E-value=1.5e+02 Score=28.78 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=23.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHH
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
+-+|.++|.-......+...||..+..+++.+ -+.+++++-+|.+|++-|++-
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~------~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSE------FAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33445555444444444455555444443221 122334444444444444443
No 481
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=44.18 E-value=1.2e+02 Score=31.57 Aligned_cols=63 Identities=25% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH------------HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSV------------LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~------------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
.+...|..+...|.+|+++|..++|-..+.=..| +...+..=+-++..+-++..|.+|+---|
T Consensus 180 ~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~eq~~dy~~fv~mKa~Ll~eqreLddkiklge 254 (264)
T PF08687_consen 180 EERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEEQLADYRHFVKMKAALLIEQRELDDKIKLGE 254 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 5667788888999999999999999988887776 55566666666667778888888886554
No 482
>PRK11519 tyrosine kinase; Provisional
Probab=44.14 E-value=90 Score=37.55 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=31.9
Q ss_pred hhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH
Q 005493 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (694)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~ 606 (694)
+.+..+.+..+.-+-..=|++||..+.+.+++||+.+...
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666789999999999999999999886
No 483
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=44.12 E-value=89 Score=34.68 Aligned_cols=23 Identities=26% Similarity=0.037 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHhhchhhHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAA 591 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~ 591 (694)
-.+|++-..|-.+|.-|..||-|
T Consensus 399 ~erEkEr~~l~~eNk~L~~QLrD 421 (488)
T PF06548_consen 399 AEREKERRFLKDENKGLQIQLRD 421 (488)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Confidence 46889999999999999999976
No 484
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.85 E-value=1.5e+02 Score=24.22 Aligned_cols=57 Identities=21% Similarity=0.319 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 627 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l 627 (694)
...++..+.++.+..+.-+....+.++.|+..+..+....+++..++...-++.+.+
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778888888888888899999999999999988888888777666664433
No 485
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=43.76 E-value=4.9e+02 Score=28.76 Aligned_cols=109 Identities=12% Similarity=0.037 Sum_probs=51.8
Q ss_pred ceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceE
Q 005493 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (694)
Q Consensus 225 ~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~s 304 (694)
.||..|.......++.. .++.-..+|-..+-++..|+..+.... +.-.-+..||+.+..=+.+..+ +++.|-
T Consensus 217 RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~ 288 (386)
T PF14583_consen 217 RIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERRRLMEM-----PWCSHF 288 (386)
T ss_dssp SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EEEEEEE------SEEEE
T ss_pred EEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCceEEEeC-----Cceeee
Confidence 56777666555555532 344556666666666663433332211 1122478899988754444433 457777
Q ss_pred EEEECCEEEEEcCCCCCC---------CcC--eEEEEECCCCcEEEee
Q 005493 305 GVLCGTKWYIAGGGSRKK---------RHA--ETLIFDILKGEWSVAI 341 (694)
Q Consensus 305 av~~~~~iyV~GG~~~~~---------~~~--~v~~yd~~t~~W~~l~ 341 (694)
.+..++++++--|.+... ..+ -++++++....-..+.
T Consensus 289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 777788888877764321 112 3455777776654443
No 486
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=43.47 E-value=1.2e+02 Score=32.94 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=13.4
Q ss_pred chhhHHHHHHHhhHHHHhhhhHH
Q 005493 583 GILEGQLAAALVNREAAEKNFSS 605 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~ 605 (694)
..++.+|..|.+.+++|+++++.
T Consensus 109 ~~~~~~l~~a~~~l~~a~~~~~r 131 (370)
T PRK11578 109 MELRAQRQQAEAELKLARVTLSR 131 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665543
No 487
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.36 E-value=1.7e+02 Score=27.07 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=7.3
Q ss_pred hhHHHHHHHHhhhhhhh
Q 005493 657 HDVAFLKAVLDDTQKVN 673 (694)
Q Consensus 657 ~~~~~~~~~~~~~~~~~ 673 (694)
.++++++.-++..+..+
T Consensus 115 ~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 115 EALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 488
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.33 E-value=1.5e+02 Score=38.41 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q 005493 658 DVAFLKAVLDDTQKVNCSYYTQLMHEFLHDEL 689 (694)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (694)
+++-|+.-+.+++++|...+.....+.+.+++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 503 (1311)
T TIGR00606 472 RILELDQELRKAERELSKAEKNSLTETLKKEV 503 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 55555555555555555555544444444443
No 489
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=43.27 E-value=51 Score=37.25 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKN 602 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ 602 (694)
..+.+++.+-+....++.++......++..+++
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444445555555555555555555555555554
No 490
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=43.25 E-value=1.6e+02 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=10.6
Q ss_pred hchhhHHHHHHHhhHHHHhhhhHH
Q 005493 582 NGILEGQLAAALVNREAAEKNFSS 605 (694)
Q Consensus 582 ~~~l~~~l~~~~~~~~~~e~~~~~ 605 (694)
.....++|++|...+++|++-+..
T Consensus 41 ~~~I~~~l~~Ae~~~~ea~~~~~e 64 (164)
T PRK14473 41 TRRIEESLRDAEKVREQLANAKRD 64 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 491
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=43.22 E-value=1.3e+02 Score=33.29 Aligned_cols=89 Identities=7% Similarity=0.007 Sum_probs=0.0
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHH
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVA 660 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 660 (694)
+...++.+|+.|.+.+++|+.++.......++++.+++.+..+++..+..+.-.+. ....+.-=+.|+.
T Consensus 93 D~~~~~~~l~~A~a~l~~a~~~~~~~~~~~~~~~a~l~~a~a~l~~a~~~~~R~~~-----------L~~~g~iS~~~ld 161 (390)
T PRK15136 93 DPTDAEQAFEKAKTALANSVRQTHQLMINSKQYQANIELQKTALAQAQSDLNRRVP-----------LGNANLIGREELQ 161 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHCCCcCHHHHH
Q ss_pred HHHHHHhhhhhhhhhhhhhh
Q 005493 661 FLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~ 680 (694)
-.++-++..+.++...+..|
T Consensus 162 ~a~~~~~~a~a~l~~a~~~l 181 (390)
T PRK15136 162 HARDAVASAQAQLDVAIQQY 181 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 492
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.06 E-value=1.2e+02 Score=38.87 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhH-hhhcccccc
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNI 647 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~-e~~~~~~~~ 647 (694)
+.-+..++.+..+.+.+|.+|..+....+++.+.++.+....++.+.+++....+.+.++.++.....+. ++.+.--+-
T Consensus 610 ~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 689 (1201)
T PF12128_consen 610 EQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNE 689 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 005493 648 VHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHD 687 (694)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (694)
+-..-..+..+..-+++-+.+..+|++.-+..-..+...+
T Consensus 690 l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~ 729 (1201)
T PF12128_consen 690 LEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAE 729 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.02 E-value=1.4e+02 Score=26.70 Aligned_cols=65 Identities=29% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHh
Q 005493 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (694)
Q Consensus 575 ~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e 639 (694)
+.++++---+|=.|=-.+-+.++.||.++.-.++..++.++=.+.+..-.+++.+.+....+.||
T Consensus 44 ~~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~~~~~q~ 108 (108)
T PF06210_consen 44 LEAAYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLERDQERQE 108 (108)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
No 494
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.71 E-value=2.2e+02 Score=29.53 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHhhh
Q 005493 566 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL-----------KEMELLKEKLAGL 634 (694)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~-----------~~~~~l~~k~~~~ 634 (694)
++....+...-...-+...+...++.....++-|-|+...+.++-+.+-.+...+. |-...+..+-..+
T Consensus 100 ~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~ 179 (253)
T cd07676 100 RYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMA 179 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Q ss_pred hHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 005493 635 ELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHD 687 (694)
Q Consensus 635 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (694)
+.++.+|..-=|.....+-. |=-.-+-.|||..| +|+..|-..+.|.+..
T Consensus 180 e~aKn~Y~~~l~~~N~~q~~--~Y~e~mp~vfd~lQ-~lee~Ri~~l~e~l~~ 229 (253)
T cd07676 180 EDSKAEYSSYLQKFNKEQHE--HYYTHIPNIFQKIQ-EMEERRIGRVGESMKT 229 (253)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
No 495
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=42.67 E-value=1.4e+02 Score=30.58 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHhhhhHhH
Q 005493 566 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL-------KEMELLKEKLAGLELAQ 638 (694)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~-------~~~~~l~~k~~~~~~~~ 638 (694)
....+.++..-........|..++.......+.+-|.-..+-+.-+.++.|+..+. ++.|+++.|+...+.+-
T Consensus 98 ~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~ 177 (251)
T cd07653 98 TLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAA 177 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Q ss_pred hhhcc
Q 005493 639 EEANS 643 (694)
Q Consensus 639 e~~~~ 643 (694)
+++.+
T Consensus 178 ~~a~~ 182 (251)
T cd07653 178 EEAKN 182 (251)
T ss_pred HHHHH
No 496
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.60 E-value=1.2e+02 Score=37.01 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHH-HHHHHHHHHhhhhHhHhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK-EMELLKEKLAGLELAQEEA 641 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~-~~~~l~~k~~~~~~~~e~~ 641 (694)
...+.-+..|.++...+|+....+...++++|+.+..+-+.+++++++...+.+ ..+++++.+..++.+-++.
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~ 589 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEI 589 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.47 E-value=1.3e+02 Score=26.39 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCc-------------------cchhhHHHHH
Q 005493 603 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV-------------------RLEHDVAFLK 663 (694)
Q Consensus 603 ~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 663 (694)
+..++...+++.+.++.+......|.-.+...+.+.+|...|. +|.. +|+..+++|.
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~----~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA----DDAEVYKLVGNVLVKQEKEEARTELKERLETIE 76 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CcchHHHHhhhHHhhccHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhhhhh
Q 005493 664 AVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 664 ~~~~~~~~~~~~~~~~~ 680 (694)
+.++...++++.....+
T Consensus 77 ~~i~~l~~~~~~l~~~~ 93 (105)
T cd00632 77 LRIKRLERQEEDLQEKL 93 (105)
T ss_pred HHHHHHHHHHHHHHHHH
No 498
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=42.37 E-value=1e+02 Score=25.78 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhHHHHhhhhHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhh
Q 005493 584 ILEGQLAAALVNREAAEKNFSSV-----LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHD 658 (694)
Q Consensus 584 ~l~~~l~~~~~~~~~~e~~~~~~-----~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 658 (694)
...+.+++...=+.++|..++.. +..-+.+-++.....+++...+.+|..+. +.+..|.+.-|.+...+...
T Consensus 5 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~---~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 5 QFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLN---EQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHHcCCCcHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh
Q 005493 659 VAFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~ 680 (694)
+.-|..-.+.....+...+..|
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
No 499
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=42.35 E-value=3.3e+02 Score=30.47 Aligned_cols=157 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCccee
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~h 252 (694)
..++.+|+.++.=..+. +.+..-..+...-.+.+|.+..=.++. .++|.||+.+.+-.++. ..+..-...
T Consensus 218 ~~i~~~~l~~g~~~~i~---~~~g~~~~P~fspDG~~l~f~~~rdg~----~~iy~~dl~~~~~~~Lt---~~~gi~~~P 287 (425)
T COG0823 218 PRIYYLDLNTGKRPVIL---NFNGNNGAPAFSPDGSKLAFSSSRDGS----PDIYLMDLDGKNLPRLT---NGFGINTSP 287 (425)
T ss_pred ceEEEEeccCCccceee---ccCCccCCccCCCCCCEEEEEECCCCC----ccEEEEcCCCCcceecc---cCCccccCc
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEEC
Q 005493 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (694)
Q Consensus 253 s~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~ 332 (694)
+...-+...+|+ +...-..++|++|++...=+.+... .+...+-...-+++.+++=+...+. -++..+|+
T Consensus 288 s~spdG~~ivf~----Sdr~G~p~I~~~~~~g~~~~riT~~----~~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~~~~ 357 (425)
T COG0823 288 SWSPDGSKIVFT----SDRGGRPQIYLYDLEGSQVTRLTFS----GGGNSNPVWSPDGDKIVFESSSGGQ--WDIDKNDL 357 (425)
T ss_pred cCCCCCCEEEEE----eCCCCCcceEEECCCCCceeEeecc----CCCCcCccCCCCCCEEEEEeccCCc--eeeEEecc
Q ss_pred CCCc-EEEeecCCCCCCC
Q 005493 333 LKGE-WSVAITSPSSSVT 349 (694)
Q Consensus 333 ~t~~-W~~l~~~~~~~p~ 349 (694)
.+.. |..+........+
T Consensus 358 ~~~~~~~~lt~~~~~e~p 375 (425)
T COG0823 358 ASGGKIRILTSTYLNESP 375 (425)
T ss_pred CCCCcEEEccccccCCCC
No 500
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.21 E-value=1.2e+02 Score=26.78 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHh
Q 005493 591 AALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (694)
Q Consensus 591 ~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e 639 (694)
++...+|+|+.+.=---+++++|++-...+.++.+.-+++|..+|..-+
T Consensus 52 ~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 52 GAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!