Query 005496
Match_columns 694
No_of_seqs 405 out of 2950
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 00:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 9E-117 2E-121 930.7 48.2 571 84-694 1-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 5E-113 1E-117 959.0 47.5 600 73-694 36-645 (645)
3 PRK10953 cysJ sulfite reductas 100.0 7E-109 2E-113 942.5 63.1 539 82-694 60-600 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 3E-106 7E-111 925.2 62.5 538 83-694 58-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 2E-103 3E-108 885.3 51.7 541 82-694 46-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 1.6E-81 3.4E-86 694.5 46.0 396 291-694 2-416 (416)
7 cd06203 methionine_synthase_re 100.0 9E-80 1.9E-84 677.3 44.2 382 299-694 2-398 (398)
8 cd06202 Nitric_oxide_synthase 100.0 2.9E-79 6.3E-84 674.4 45.4 386 299-694 2-402 (406)
9 cd06207 CyPoR_like NADPH cytoc 100.0 1.7E-79 3.8E-84 672.6 43.3 380 299-694 2-382 (382)
10 cd06206 bifunctional_CYPOR The 100.0 2.5E-76 5.5E-81 648.0 44.5 376 298-694 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 1.8E-73 3.8E-78 619.8 39.7 356 298-694 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 1.2E-72 2.5E-77 632.2 45.8 369 286-694 160-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 4.4E-49 9.6E-54 400.2 21.1 218 288-511 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 2.1E-42 4.5E-47 373.4 29.0 273 288-694 84-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 8.2E-40 1.8E-44 342.0 29.6 218 470-694 47-267 (267)
16 PLN03116 ferredoxin--NADP+ red 100.0 1.2E-35 2.6E-40 316.7 30.0 274 289-694 19-307 (307)
17 TIGR03224 benzo_boxA benzoyl-C 100.0 1.7E-35 3.7E-40 326.5 31.2 269 289-694 137-411 (411)
18 cd06208 CYPOR_like_FNR These f 100.0 2.9E-35 6.4E-40 310.9 31.3 271 290-694 4-286 (286)
19 cd06201 SiR_like2 Cytochrome p 100.0 1.2E-34 2.5E-39 306.6 30.4 189 471-694 100-289 (289)
20 cd06200 SiR_like1 Cytochrome p 100.0 4.5E-35 9.8E-40 302.7 20.8 211 455-694 31-245 (245)
21 PRK09004 FMN-binding protein M 100.0 2.4E-33 5.1E-38 266.7 17.8 144 83-239 1-146 (146)
22 PRK08105 flavodoxin; Provision 100.0 5.1E-33 1.1E-37 265.3 18.2 145 83-239 1-147 (149)
23 PRK05723 flavodoxin; Provision 100.0 1.1E-32 2.4E-37 263.0 17.7 145 84-240 1-150 (151)
24 PF00258 Flavodoxin_1: Flavodo 99.9 9.1E-27 2E-31 220.7 11.1 138 88-231 1-143 (143)
25 PRK07308 flavodoxin; Validated 99.9 2.8E-25 6E-30 211.6 17.4 140 83-235 1-142 (146)
26 cd06189 flavin_oxioreductase N 99.9 2.2E-25 4.8E-30 227.2 14.7 183 454-663 24-211 (224)
27 cd00322 FNR_like Ferredoxin re 99.9 2.9E-25 6.3E-30 225.1 15.2 188 455-664 22-213 (223)
28 cd06188 NADH_quinone_reductase 99.9 6.3E-25 1.4E-29 231.9 15.5 179 471-664 86-271 (283)
29 PRK10926 ferredoxin-NADP reduc 99.9 7.4E-25 1.6E-29 227.0 14.4 186 455-663 30-227 (248)
30 PRK08051 fre FMN reductase; Va 99.9 7.4E-25 1.6E-29 224.7 13.9 182 455-663 29-216 (232)
31 cd06211 phenol_2-monooxygenase 99.9 1E-24 2.2E-29 224.5 14.9 183 455-663 35-225 (238)
32 PRK07609 CDP-6-deoxy-delta-3,4 99.9 7.3E-25 1.6E-29 237.3 14.4 181 456-663 132-319 (339)
33 PRK10684 HCP oxidoreductase, N 99.9 1.3E-23 2.8E-28 226.8 23.5 169 471-664 54-225 (332)
34 cd06187 O2ase_reductase_like T 99.9 2.9E-24 6.4E-29 218.5 15.0 181 456-663 24-211 (224)
35 cd06190 T4MO_e_transfer_like T 99.9 3.5E-24 7.7E-29 219.3 15.5 186 455-664 23-218 (232)
36 cd06210 MMO_FAD_NAD_binding Me 99.9 3.9E-24 8.4E-29 219.6 15.8 183 455-663 34-222 (236)
37 cd06209 BenDO_FAD_NAD Benzoate 99.9 4.1E-24 9E-29 218.3 15.5 180 455-663 30-214 (228)
38 PRK13289 bifunctional nitric o 99.9 3.5E-24 7.6E-29 237.0 15.7 183 456-663 185-379 (399)
39 cd06212 monooxygenase_like The 99.9 4.6E-24 9.9E-29 218.6 14.9 182 455-663 29-218 (232)
40 PRK06703 flavodoxin; Provision 99.9 1.5E-23 3.3E-28 200.8 17.3 147 83-242 1-150 (151)
41 PRK05464 Na(+)-translocating N 99.9 5.2E-24 1.1E-28 236.0 16.0 180 469-663 208-394 (409)
42 cd06191 FNR_iron_sulfur_bindin 99.9 4.3E-24 9.3E-29 218.6 14.1 185 456-663 28-218 (231)
43 PRK11872 antC anthranilate dio 99.9 6.4E-24 1.4E-28 229.9 15.6 179 456-663 137-322 (340)
44 TIGR01941 nqrF NADH:ubiquinone 99.9 6.7E-24 1.4E-28 234.9 16.0 179 470-663 205-390 (405)
45 PRK08345 cytochrome-c3 hydroge 99.9 4.8E-24 1E-28 225.7 13.9 180 456-664 38-234 (289)
46 cd06195 FNR1 Ferredoxin-NADP+ 99.9 7.3E-24 1.6E-28 218.4 14.5 186 456-664 25-223 (241)
47 cd06196 FNR_like_1 Ferredoxin 99.9 7.5E-23 1.6E-27 207.5 21.0 162 470-664 46-208 (218)
48 cd06194 FNR_N-term_Iron_sulfur 99.9 1.9E-23 4.2E-28 212.4 16.6 183 455-663 23-208 (222)
49 cd06216 FNR_iron_sulfur_bindin 99.9 1.3E-22 2.7E-27 209.5 21.4 166 470-663 63-231 (243)
50 cd06213 oxygenase_e_transfer_s 99.9 2.8E-23 6E-28 212.2 14.7 178 456-663 28-214 (227)
51 cd06221 sulfite_reductase_like 99.9 3E-23 6.5E-28 215.6 13.7 181 455-664 27-212 (253)
52 PRK12359 flavodoxin FldB; Prov 99.9 1.8E-22 3.9E-27 196.3 18.0 144 84-242 1-171 (172)
53 cd06184 flavohem_like_fad_nad_ 99.9 5.2E-23 1.1E-27 212.8 15.0 183 456-663 37-230 (247)
54 cd06215 FNR_iron_sulfur_bindin 99.9 7.6E-23 1.6E-27 209.1 15.0 185 455-663 27-218 (231)
55 PRK05713 hypothetical protein; 99.9 4.8E-23 1E-27 220.5 13.9 175 456-663 119-295 (312)
56 cd06217 FNR_iron_sulfur_bindin 99.9 1.7E-22 3.7E-27 207.1 14.0 185 456-664 31-223 (235)
57 cd06214 PA_degradation_oxidore 99.9 2.2E-22 4.8E-27 207.1 14.9 186 455-663 32-227 (241)
58 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 2.4E-22 5.2E-27 218.7 14.7 187 455-664 32-229 (352)
59 PRK08221 anaerobic sulfite red 99.9 2.5E-22 5.4E-27 209.8 13.9 174 456-663 33-213 (263)
60 cd06218 DHOD_e_trans FAD/NAD b 99.9 3.1E-22 6.8E-27 207.1 14.3 171 456-664 25-202 (246)
61 cd06198 FNR_like_3 NAD(P) bind 99.9 4.9E-22 1.1E-26 201.4 14.0 177 455-663 22-202 (216)
62 PRK09271 flavodoxin; Provision 99.9 1.2E-21 2.5E-26 189.6 15.9 142 84-239 1-147 (160)
63 cd06183 cyt_b5_reduct_like Cyt 99.9 6.6E-22 1.4E-26 202.4 14.2 185 455-663 28-223 (234)
64 PTZ00274 cytochrome b5 reducta 99.9 3.8E-22 8.3E-27 213.6 12.8 184 456-660 82-281 (325)
65 TIGR02911 sulfite_red_B sulfit 99.9 6E-22 1.3E-26 206.7 13.7 174 456-663 31-211 (261)
66 PRK06756 flavodoxin; Provision 99.9 3.3E-21 7.2E-26 184.0 17.0 136 83-232 1-137 (148)
67 PTZ00319 NADH-cytochrome B5 re 99.9 1.5E-21 3.3E-26 207.6 14.2 192 456-663 64-289 (300)
68 COG1018 Hmp Flavodoxin reducta 99.9 2.7E-21 5.7E-26 201.2 15.1 178 456-664 35-218 (266)
69 cd06185 PDR_like Phthalate dio 99.9 3E-21 6.5E-26 194.7 14.1 172 455-663 25-197 (211)
70 PRK11921 metallo-beta-lactamas 99.9 1.5E-21 3.2E-26 215.5 12.3 186 9-238 198-392 (394)
71 TIGR01753 flav_short flavodoxi 99.8 1.5E-20 3.2E-25 177.1 15.1 121 86-220 1-122 (140)
72 COG0543 UbiB 2-polyprenylpheno 99.8 7E-21 1.5E-25 197.5 14.0 177 455-664 35-214 (252)
73 cd06197 FNR_like_2 FAD/NAD(P) 99.8 6.6E-21 1.4E-25 194.0 12.6 157 456-663 26-211 (220)
74 TIGR01752 flav_long flavodoxin 99.8 3.3E-20 7.1E-25 180.8 16.5 140 85-239 1-166 (167)
75 PRK00054 dihydroorotate dehydr 99.8 8.7E-21 1.9E-25 196.8 12.7 166 455-663 31-202 (250)
76 cd06220 DHOD_e_trans_like2 FAD 99.8 1.4E-20 2.9E-25 193.3 13.3 164 455-664 23-189 (233)
77 KOG1160 Fe-S oxidoreductase [E 99.8 2.4E-20 5.2E-25 196.0 13.7 143 84-241 47-194 (601)
78 cd06192 DHOD_e_trans_like FAD/ 99.8 3.6E-20 7.8E-25 191.3 13.4 172 456-665 25-201 (243)
79 TIGR01754 flav_RNR ribonucleot 99.8 8.8E-20 1.9E-24 172.6 14.9 131 84-235 1-139 (140)
80 PRK05452 anaerobic nitric oxid 99.8 3.2E-20 7E-25 208.7 13.5 187 11-240 204-397 (479)
81 PRK06222 ferredoxin-NADP(+) re 99.8 2.8E-20 6E-25 196.3 11.7 172 456-664 28-203 (281)
82 cd06219 DHOD_e_trans_like1 FAD 99.8 5.6E-20 1.2E-24 190.5 12.4 172 455-663 26-201 (248)
83 COG0716 FldA Flavodoxins [Ener 99.8 6.1E-19 1.3E-23 169.0 15.7 143 83-238 1-150 (151)
84 PLN02252 nitrate reductase [NA 99.8 1.9E-19 4.1E-24 214.0 14.6 193 456-663 665-877 (888)
85 PRK05802 hypothetical protein; 99.8 1.3E-19 2.9E-24 194.0 10.2 173 457-664 96-276 (320)
86 PRK09267 flavodoxin FldA; Vali 99.8 2.7E-18 5.9E-23 167.6 17.3 142 83-239 1-167 (169)
87 KOG0534 NADH-cytochrome b-5 re 99.8 1.8E-18 3.9E-23 179.2 16.0 173 457-656 83-267 (286)
88 COG2871 NqrF Na+-transporting 99.8 7.3E-19 1.6E-23 176.4 12.0 185 470-669 210-401 (410)
89 PTZ00306 NADH-dependent fumara 99.8 1.2E-18 2.7E-23 214.9 13.4 186 456-664 948-1151(1167)
90 COG4097 Predicted ferric reduc 99.8 4.3E-18 9.4E-23 177.2 13.6 163 468-664 259-423 (438)
91 cd06186 NOX_Duox_like_FAD_NADP 99.7 1.3E-17 2.8E-22 168.1 10.8 163 455-663 24-197 (210)
92 cd06193 siderophore_interactin 99.7 9.8E-18 2.1E-22 172.4 9.2 170 457-663 28-219 (235)
93 PRK12778 putative bifunctional 99.7 2.2E-17 4.7E-22 196.6 13.0 171 456-663 28-202 (752)
94 PF00175 NAD_binding_1: Oxidor 99.7 8.3E-17 1.8E-21 144.8 9.1 104 548-659 1-109 (109)
95 COG0426 FpaA Uncharacterized f 99.7 1E-16 2.2E-21 171.6 10.1 163 8-216 198-365 (388)
96 PRK12779 putative bifunctional 99.7 3.4E-16 7.3E-21 188.7 15.3 182 455-663 676-868 (944)
97 PRK05569 flavodoxin; Provision 99.7 2.1E-15 4.5E-20 142.7 14.7 115 83-214 1-117 (141)
98 TIGR00333 nrdI ribonucleoside- 99.6 5.1E-16 1.1E-20 142.7 10.1 92 88-206 1-93 (125)
99 PRK05568 flavodoxin; Provision 99.6 1.7E-15 3.6E-20 143.4 13.6 117 83-217 1-119 (142)
100 PRK12775 putative trifunctiona 99.6 2.5E-15 5.4E-20 182.7 12.1 170 456-663 28-202 (1006)
101 PRK03600 nrdI ribonucleotide r 99.5 2.9E-13 6.3E-18 126.5 13.9 121 85-237 2-130 (134)
102 PRK02551 flavoprotein NrdI; Pr 99.5 3E-13 6.6E-18 128.6 13.7 136 83-233 1-144 (154)
103 PLN02844 oxidoreductase/ferric 99.4 9.6E-13 2.1E-17 153.1 13.5 185 455-652 338-537 (722)
104 PRK06242 flavodoxin; Provision 99.4 1.3E-12 2.7E-17 124.8 11.7 108 84-215 1-109 (150)
105 PLN02631 ferric-chelate reduct 99.4 5.7E-13 1.2E-17 154.3 10.9 149 455-619 334-493 (699)
106 PLN02292 ferric-chelate reduct 99.4 1.8E-12 4E-17 150.3 13.7 179 456-651 352-547 (702)
107 TIGR01755 flav_wrbA NAD(P)H:qu 99.3 4.7E-11 1E-15 119.6 14.5 127 84-213 1-141 (197)
108 PRK03767 NAD(P)H:quinone oxido 99.3 4.7E-11 1E-15 119.8 14.4 127 83-213 1-142 (200)
109 PRK11104 hemG protoporphyrinog 99.2 8.5E-11 1.8E-15 115.7 9.7 87 84-186 1-87 (177)
110 KOG3378 Globins and related he 99.1 1.8E-11 3.8E-16 122.9 1.7 177 454-665 179-369 (385)
111 PRK07116 flavodoxin; Provision 99.1 1.3E-09 2.8E-14 105.5 12.1 133 83-235 2-158 (160)
112 PF07972 Flavodoxin_NdrI: NrdI 99.0 9.7E-10 2.1E-14 100.6 9.0 95 88-204 1-100 (122)
113 PF12724 Flavodoxin_5: Flavodo 99.0 3.3E-09 7.1E-14 100.7 13.0 85 87-189 1-87 (143)
114 COG1780 NrdI Protein involved 98.9 4.8E-09 1.1E-13 95.8 10.0 124 85-239 2-133 (141)
115 PF03358 FMN_red: NADPH-depend 98.8 6E-08 1.3E-12 92.7 13.4 125 84-214 1-142 (152)
116 PF12641 Flavodoxin_3: Flavodo 98.7 1.5E-07 3.3E-12 90.8 11.0 97 87-207 1-99 (160)
117 PF08030 NAD_binding_6: Ferric 98.6 1E-07 2.2E-12 91.4 8.3 74 545-618 3-79 (156)
118 COG4635 HemG Flavodoxin [Energ 98.6 8.4E-08 1.8E-12 90.0 7.3 111 84-210 1-114 (175)
119 PF12682 Flavodoxin_4: Flavodo 98.4 1.7E-06 3.7E-11 83.4 10.8 132 85-235 1-156 (156)
120 PRK10569 NAD(P)H-dependent FMN 98.4 1.4E-05 2.9E-10 79.8 16.3 120 84-212 1-133 (191)
121 PRK06567 putative bifunctional 98.3 2.1E-06 4.6E-11 102.5 9.8 94 444-557 805-907 (1028)
122 TIGR03567 FMN_reduc_SsuE FMN r 98.2 3.9E-05 8.5E-10 75.1 15.2 119 85-212 1-132 (171)
123 PRK00170 azoreductase; Reviewe 98.1 0.00011 2.4E-09 73.5 17.1 157 83-241 1-197 (201)
124 KOG0039 Ferric reductase, NADH 98.1 2.1E-05 4.5E-10 92.3 11.4 132 457-601 383-536 (646)
125 PRK09739 hypothetical protein; 98.0 0.00016 3.4E-09 72.6 16.1 157 83-242 3-197 (199)
126 TIGR03566 FMN_reduc_MsuE FMN r 98.0 9.6E-05 2.1E-09 72.5 14.1 120 85-212 1-135 (174)
127 PRK01355 azoreductase; Reviewe 98.0 0.00023 5E-09 71.5 17.1 158 83-241 1-194 (199)
128 PRK06934 flavodoxin; Provision 98.0 5.7E-05 1.2E-09 76.6 12.5 127 91-235 67-217 (221)
129 PF00970 FAD_binding_6: Oxidor 97.9 2.4E-06 5.1E-11 75.5 0.8 67 455-537 29-98 (99)
130 PRK13556 azoreductase; Provisi 97.9 0.0007 1.5E-08 68.4 17.6 157 83-241 1-203 (208)
131 PF02525 Flavodoxin_2: Flavodo 97.9 0.00046 9.9E-09 69.1 15.9 152 84-239 1-199 (199)
132 COG0655 WrbA Multimeric flavod 97.7 0.00036 7.8E-09 70.5 12.3 123 85-212 5-148 (207)
133 TIGR02690 resist_ArsH arsenica 97.3 0.012 2.6E-07 59.8 17.3 126 83-213 26-162 (219)
134 PRK04930 glutathione-regulated 96.9 0.064 1.4E-06 53.1 17.4 158 81-242 3-178 (184)
135 PRK13555 azoreductase; Provisi 96.9 0.066 1.4E-06 54.2 17.9 129 83-212 1-175 (208)
136 KOG3135 1,4-benzoquinone reduc 96.9 0.01 2.2E-07 56.5 10.9 128 84-218 2-146 (203)
137 COG2375 ViuB Siderophore-inter 95.9 0.11 2.3E-06 54.1 12.6 166 467-675 83-250 (265)
138 COG0431 Predicted flavoprotein 95.6 0.12 2.5E-06 51.3 11.2 122 84-214 1-136 (184)
139 PRK00871 glutathione-regulated 94.9 0.66 1.4E-05 45.7 13.8 152 86-241 2-169 (176)
140 COG2249 MdaB Putative NADPH-qu 91.5 4.2 9.1E-05 40.5 13.4 156 84-242 1-187 (189)
141 PRK02261 methylaspartate mutas 90.1 7.4 0.00016 36.7 12.9 128 85-236 3-134 (137)
142 KOG0560 Sulfite reductase (fer 87.8 0.22 4.9E-06 54.9 1.1 61 182-242 1-69 (638)
143 TIGR01501 MthylAspMutase methy 85.6 16 0.00035 34.3 12.1 127 87-234 3-130 (134)
144 cd02072 Glm_B12_BD B12 binding 83.4 12 0.00026 34.9 10.1 114 88-216 2-116 (128)
145 PF08022 FAD_binding_8: FAD-bi 82.4 0.24 5.1E-06 44.4 -1.5 79 443-534 15-102 (105)
146 PF08021 FAD_binding_9: Sidero 79.8 1.5 3.2E-05 40.2 2.7 54 468-536 64-117 (117)
147 KOG1160 Fe-S oxidoreductase [E 73.5 2.2 4.7E-05 47.0 2.3 126 83-215 357-488 (601)
148 PRK05907 hypothetical protein; 66.1 1.2E+02 0.0027 32.5 13.8 134 75-239 10-150 (311)
149 PRK09622 porA pyruvate flavodo 61.1 64 0.0014 36.2 10.8 109 83-202 268-382 (407)
150 TIGR00640 acid_CoA_mut_C methy 61.0 71 0.0015 29.8 9.5 111 86-216 3-113 (132)
151 cd06533 Glyco_transf_WecG_TagA 60.0 47 0.001 32.4 8.5 115 74-209 37-154 (171)
152 PRK14194 bifunctional 5,10-met 59.1 2.3E+02 0.005 30.4 14.0 117 83-212 33-187 (301)
153 PF06283 ThuA: Trehalose utili 56.1 45 0.00098 33.6 7.9 75 85-167 1-80 (217)
154 COG1182 AcpD Acyl carrier prot 55.5 2.3E+02 0.0051 28.5 16.4 129 83-212 1-172 (202)
155 cd05566 PTS_IIB_galactitol PTS 54.6 35 0.00076 29.0 5.9 34 84-119 1-34 (89)
156 TIGR02667 moaB_proteo molybden 53.9 16 0.00034 35.5 3.9 57 175-231 2-58 (163)
157 PF00970 FAD_binding_6: Oxidor 52.7 41 0.0009 29.0 6.1 38 297-339 2-41 (99)
158 PRK05752 uroporphyrinogen-III 52.3 67 0.0015 33.2 8.7 90 99-214 13-107 (255)
159 cd02067 B12-binding B12 bindin 50.3 1.9E+02 0.0041 25.9 10.7 108 88-215 2-109 (119)
160 cd05009 SIS_GlmS_GlmD_2 SIS (S 47.9 93 0.002 28.8 8.2 82 75-167 6-87 (153)
161 PF03808 Glyco_tran_WecB: Glyc 47.7 1.5E+02 0.0032 28.9 9.7 114 75-209 40-156 (172)
162 cd00578 L-fuc_L-ara-isomerases 46.3 1.8E+02 0.0039 32.9 11.6 128 85-233 2-150 (452)
163 COG1587 HemD Uroporphyrinogen- 45.0 65 0.0014 33.2 7.2 91 99-214 11-103 (248)
164 PF09651 Cas_APE2256: CRISPR-a 44.3 37 0.00081 31.8 4.7 40 86-127 24-63 (136)
165 cd06212 monooxygenase_like The 44.0 46 0.001 33.6 5.8 41 295-340 1-42 (232)
166 PF13433 Peripla_BP_5: Peripla 43.4 1.1E+02 0.0024 33.7 8.7 103 83-215 66-169 (363)
167 PRK09212 pyruvate dehydrogenas 42.3 60 0.0013 35.2 6.6 78 81-167 200-278 (327)
168 cd06578 HemD Uroporphyrinogen- 42.3 1.4E+02 0.0029 29.8 9.0 112 73-214 109-226 (239)
169 PRK14192 bifunctional 5,10-met 41.3 4.6E+02 0.01 27.8 13.7 48 154-211 139-186 (283)
170 cd06200 SiR_like1 Cytochrome p 40.3 50 0.0011 34.0 5.5 38 303-340 6-44 (245)
171 PRK08811 uroporphyrinogen-III 40.1 1.5E+02 0.0032 31.1 9.0 88 98-213 27-118 (266)
172 PRK08366 vorA 2-ketoisovalerat 39.9 1.8E+02 0.0039 32.4 10.0 108 83-202 260-372 (390)
173 cd07363 45_DOPA_Dioxygenase Th 38.7 1E+02 0.0022 32.0 7.5 83 97-190 79-163 (253)
174 PRK05928 hemD uroporphyrinogen 38.3 1.7E+02 0.0038 29.4 9.1 55 135-212 49-103 (249)
175 PRK10310 PTS system galactitol 38.3 57 0.0012 28.5 4.6 35 85-121 4-38 (94)
176 COG0429 Predicted hydrolase of 37.8 2.2E+02 0.0047 31.0 9.6 98 84-211 76-173 (345)
177 cd07371 2A5CPDO_AB The alpha a 37.2 1.5E+02 0.0032 31.1 8.5 104 97-207 86-205 (268)
178 PRK07168 bifunctional uroporph 36.4 1.1E+02 0.0025 34.9 7.9 89 98-211 260-351 (474)
179 PRK14179 bifunctional 5,10-met 36.1 5.6E+02 0.012 27.3 13.1 117 84-213 33-187 (284)
180 cd06578 HemD Uroporphyrinogen- 35.3 1.5E+02 0.0033 29.5 8.0 89 101-214 10-102 (239)
181 TIGR00091 tRNA (guanine-N(7)-) 34.8 3.2E+02 0.0069 26.9 10.0 33 631-663 115-147 (194)
182 COG1587 HemD Uroporphyrinogen- 34.3 2.1E+02 0.0045 29.5 8.9 110 73-213 110-227 (248)
183 cd00758 MoCF_BD MoCF_BD: molyb 34.1 38 0.00083 31.4 3.1 53 179-231 1-55 (133)
184 PRK08367 porA pyruvate ferredo 33.9 2.7E+02 0.0058 31.1 10.2 106 83-198 262-370 (394)
185 cd07373 2A5CPDO_A The alpha su 33.5 1.7E+02 0.0036 30.8 8.1 86 96-190 88-179 (271)
186 cd05567 PTS_IIB_mannitol PTS_I 32.9 1.1E+02 0.0024 26.0 5.6 40 84-125 1-42 (87)
187 COG2185 Sbm Methylmalonyl-CoA 32.0 2.5E+02 0.0054 26.7 8.1 110 84-216 13-123 (143)
188 cd03142 GATase1_ThuA Type 1 gl 31.9 2.1E+02 0.0045 29.2 8.2 59 102-167 26-87 (215)
189 PRK09189 uroporphyrinogen-III 31.8 1.4E+02 0.003 30.4 7.1 85 101-213 12-98 (240)
190 PRK00054 dihydroorotate dehydr 31.6 1.1E+02 0.0023 31.5 6.3 42 294-341 4-45 (250)
191 cd06355 PBP1_FmdD_like Peripla 31.3 5.9E+02 0.013 27.2 12.3 48 158-214 120-167 (348)
192 cd02071 MM_CoA_mut_B12_BD meth 30.9 4.1E+02 0.0088 24.1 10.1 109 88-218 2-112 (122)
193 cd06356 PBP1_Amide_Urea_BP_lik 30.8 6.6E+02 0.014 26.6 12.5 48 157-214 119-166 (334)
194 PF02302 PTS_IIB: PTS system, 30.4 97 0.0021 26.1 4.8 37 85-123 1-37 (90)
195 PRK14189 bifunctional 5,10-met 30.2 7E+02 0.015 26.6 15.4 118 83-213 32-187 (285)
196 cd06393 PBP1_iGluR_Kainate_Glu 30.1 2.6E+02 0.0056 30.6 9.3 92 82-189 138-230 (384)
197 PRK10427 putative PTS system f 30.0 1.7E+02 0.0036 26.7 6.4 55 84-146 3-65 (114)
198 cd06209 BenDO_FAD_NAD Benzoate 30.0 1.1E+02 0.0025 30.6 6.1 41 295-340 2-43 (228)
199 KOG4530 Predicted flavoprotein 29.9 5.3E+02 0.011 25.1 9.8 42 136-184 84-125 (199)
200 PRK14188 bifunctional 5,10-met 29.4 7.3E+02 0.016 26.6 14.9 117 83-212 32-186 (296)
201 cd06217 FNR_iron_sulfur_bindin 29.1 1.1E+02 0.0025 30.7 5.9 40 296-340 3-43 (235)
202 PF13380 CoA_binding_2: CoA bi 29.0 1.5E+02 0.0033 26.8 6.0 97 96-217 11-111 (116)
203 cd05563 PTS_IIB_ascorbate PTS_ 29.0 1.2E+02 0.0025 25.5 5.0 39 85-125 1-41 (86)
204 PF06144 DNA_pol3_delta: DNA p 28.9 2.9E+02 0.0063 26.1 8.4 131 87-238 1-139 (172)
205 cd00133 PTS_IIB PTS_IIB: subun 28.8 1E+02 0.0022 25.0 4.5 30 85-116 1-30 (84)
206 TIGR00853 pts-lac PTS system, 28.4 77 0.0017 27.8 3.8 35 83-120 3-37 (95)
207 cd06211 phenol_2-monooxygenase 28.1 1.3E+02 0.0029 30.5 6.2 42 294-340 6-48 (238)
208 cd01075 NAD_bind_Leu_Phe_Val_D 28.1 75 0.0016 31.8 4.2 31 174-212 25-55 (200)
209 cd06386 PBP1_NPR_C_like Ligand 27.8 3E+02 0.0066 30.1 9.4 91 82-186 136-230 (387)
210 PRK09590 celB cellobiose phosp 27.4 88 0.0019 28.0 4.0 35 83-120 1-35 (104)
211 PTZ00182 3-methyl-2-oxobutanat 27.3 91 0.002 34.3 5.0 78 81-167 232-310 (355)
212 cd06214 PA_degradation_oxidore 27.3 84 0.0018 31.8 4.5 40 295-339 2-44 (241)
213 TIGR01917 gly_red_sel_B glycin 25.9 5.1E+02 0.011 29.2 10.3 96 96-242 320-420 (431)
214 cd00886 MogA_MoaB MogA_MoaB fa 25.7 79 0.0017 30.1 3.7 54 178-231 1-56 (152)
215 cd05568 PTS_IIB_bgl_like PTS_I 25.7 41 0.00089 28.0 1.6 27 85-111 2-28 (85)
216 cd06184 flavohem_like_fad_nad_ 25.6 1.8E+02 0.0038 29.6 6.6 42 295-341 7-50 (247)
217 PF04392 ABC_sub_bind: ABC tra 24.9 2E+02 0.0044 30.2 7.1 42 82-125 130-171 (294)
218 PRK07452 DNA polymerase III su 24.9 7.9E+02 0.017 26.1 11.8 136 84-237 1-144 (326)
219 PRK12571 1-deoxy-D-xylulose-5- 24.4 2E+02 0.0044 34.3 7.5 58 82-145 504-561 (641)
220 PLN02234 1-deoxy-D-xylulose-5- 24.3 3E+02 0.0066 32.8 8.8 78 81-168 543-621 (641)
221 TIGR00177 molyb_syn molybdenum 24.3 63 0.0014 30.4 2.7 54 179-232 2-64 (144)
222 PF04908 SH3BGR: SH3-binding, 23.7 1.7E+02 0.0037 26.0 5.1 39 84-124 1-41 (99)
223 cd06352 PBP1_NPR_GC_like Ligan 23.6 5.7E+02 0.012 27.6 10.6 91 82-185 136-229 (389)
224 PF04954 SIP: Siderophore-inte 23.6 3.5E+02 0.0076 24.4 7.4 97 545-663 3-101 (119)
225 PTZ00110 helicase; Provisional 23.5 6.3E+02 0.014 29.4 11.3 112 82-208 376-500 (545)
226 cd06189 flavin_oxioreductase N 23.2 1.4E+02 0.003 29.9 5.2 37 298-340 2-38 (224)
227 COG3414 SgaB Phosphotransferas 22.8 2.8E+02 0.0061 24.3 6.3 42 83-126 1-44 (93)
228 KOG1448 Ribose-phosphate pyrop 22.8 6E+02 0.013 27.3 9.6 123 83-220 1-132 (316)
229 PRK13608 diacylglycerol glucos 22.7 1.4E+02 0.003 33.0 5.5 42 82-123 4-46 (391)
230 PF13684 Dak1_2: Dihydroxyacet 22.5 1.6E+02 0.0035 31.8 5.7 47 74-122 254-301 (313)
231 PLN02683 pyruvate dehydrogenas 22.3 1.5E+02 0.0033 32.5 5.6 94 82-187 228-322 (356)
232 PRK07119 2-ketoisovalerate fer 22.2 1.9E+02 0.0041 31.7 6.3 60 83-148 247-307 (352)
233 cd07372 2A5CPDO_B The beta sub 22.1 3.4E+02 0.0073 29.0 8.0 106 96-207 96-226 (294)
234 PF02826 2-Hacid_dh_C: D-isome 22.1 1.3E+02 0.0028 29.3 4.5 33 173-213 32-64 (178)
235 cd06388 PBP1_iGluR_AMPA_GluR4 22.0 4.5E+02 0.0097 28.8 9.3 79 82-169 123-202 (371)
236 PRK14180 bifunctional 5,10-met 21.9 9.8E+02 0.021 25.5 15.0 118 83-212 31-186 (282)
237 PF02780 Transketolase_C: Tran 21.9 77 0.0017 28.8 2.7 58 82-145 9-67 (124)
238 PRK15438 erythronate-4-phospha 21.8 2E+02 0.0043 32.0 6.3 67 136-213 77-144 (378)
239 PRK08105 flavodoxin; Provision 21.7 5.7E+02 0.012 24.1 8.7 98 140-242 3-114 (149)
240 PF02900 LigB: Catalytic LigB 21.6 3.4E+02 0.0074 28.2 7.9 104 96-207 94-211 (272)
241 PLN02582 1-deoxy-D-xylulose-5- 21.6 5.3E+02 0.012 31.0 10.2 91 82-185 543-634 (677)
242 PF13458 Peripla_BP_6: Peripla 21.6 7E+02 0.015 26.1 10.6 50 156-214 120-169 (343)
243 PRK07609 CDP-6-deoxy-delta-3,4 21.5 1.7E+02 0.0038 31.5 5.9 43 293-340 101-144 (339)
244 cd06213 oxygenase_e_transfer_s 21.3 1.9E+02 0.0041 29.0 5.8 39 296-340 2-40 (227)
245 PRK04148 hypothetical protein; 21.1 1.8E+02 0.0039 27.4 5.0 41 160-212 3-43 (134)
246 PF11132 SplA: Transcriptional 20.9 70 0.0015 26.7 1.9 16 327-342 5-20 (75)
247 cd07367 CarBb CarBb is the B s 20.9 5.1E+02 0.011 27.2 9.0 90 96-190 88-183 (268)
248 COG1810 Uncharacterized protei 20.8 9.2E+02 0.02 24.7 11.0 126 83-239 1-133 (224)
249 PF08357 SEFIR: SEFIR domain; 20.8 2.5E+02 0.0054 26.2 6.1 63 84-147 1-67 (150)
250 PRK11892 pyruvate dehydrogenas 20.7 1.9E+02 0.0042 33.0 6.1 95 81-187 339-434 (464)
251 PRK09548 PTS system ascorbate- 20.7 3E+02 0.0065 32.5 7.7 43 82-126 505-549 (602)
252 cd06268 PBP1_ABC_transporter_L 20.7 6E+02 0.013 25.4 9.5 92 83-190 135-227 (298)
253 PRK15083 PTS system mannitol-s 20.6 1E+02 0.0022 36.7 4.1 39 82-122 377-416 (639)
254 cd03030 GRX_SH3BGR Glutaredoxi 20.6 2.3E+02 0.0049 24.7 5.2 37 86-124 2-40 (92)
255 PRK14190 bifunctional 5,10-met 20.6 1E+03 0.023 25.3 14.6 117 83-212 32-186 (284)
256 KOG4723 Uncharacterized conser 20.4 1.8E+02 0.004 29.3 5.0 116 574-694 17-139 (248)
257 COG4245 TerY Uncharacterized p 20.3 4.1E+02 0.0088 26.7 7.3 71 94-188 77-148 (207)
258 KOG4132 Uroporphyrinogen III s 20.3 2.4E+02 0.0053 29.0 5.9 16 91-106 111-126 (260)
259 CHL00144 odpB pyruvate dehydro 20.3 2.3E+02 0.0051 30.7 6.5 95 81-187 200-295 (327)
260 PRK13609 diacylglycerol glucos 20.1 1.5E+02 0.0034 32.1 5.2 33 82-116 3-35 (380)
261 TIGR02298 HpaD_Fe 3,4-dihydrox 20.1 7.7E+02 0.017 26.1 10.2 87 97-190 95-185 (282)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=9.4e-117 Score=930.69 Aligned_cols=571 Identities=32% Similarity=0.561 Sum_probs=505.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
++|+|+||||||||+++|+.|.+++..+ +..+.|+.+++||.++ |.+.++|||+|||+|+|++|+||+.||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~--~~~~~V~s~Deyd~~~------ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRR--GLQCLVMSMDEYDVEK------LLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhc--cCCceEeeccccCHhH------hccCceEEEEEecCCCCCCCccHHHHHH
Confidence 4699999999999999999999999988 8889999999999988 8999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHHHHHHHHHHHh
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQ 241 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W~~~l~~~L~~ 241 (694)
+|...+.+..+|++++|||||||||+|+.||.++|+++++|.+|||+.++++|+|||++ +++..|..|...+|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99988777788999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred hhCCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 005496 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (694)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di 321 (694)
........... .|.......|.+..+... ....+.. .+.. ...+-| ++++.|++||+.+++++++|++|+|
T Consensus 153 i~~p~~~~t~l-~~~~~~~~k~~~l~~~~~-~~~~d~~-~v~~----~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F~i 223 (574)
T KOG1159|consen 153 IYPPYRPETDL-IPTVQITTKYSLLELGKA-SDFSDSD-IVLE----PQGQIP--AKLVENRRLTSADHFQDVRLFEFDI 223 (574)
T ss_pred hcCCCCCcccC-CCcccccchhhhhhcccc-ccCCcch-hhhc----cccccc--cchhcceeecCcchhheeeEEEEec
Confidence 77521111110 111223334444333222 1111100 0000 011222 8999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCc
Q 005496 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (694)
Q Consensus 322 ~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~ 401 (694)
.++.+.|+|||.+.|+|.|+++.|++|++.+||+++....+....++.. +..+-+|.|+|+++++++|+|+++.|+
T Consensus 224 ~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~----~~~~~~~~p~sl~~~lk~~~D~~SvPr 299 (574)
T KOG1159|consen 224 PDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS----SPLPLLPNPLSLLNLLKYVLDFNSVPR 299 (574)
T ss_pred CCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc----ccccccCCchhHHHHHHHhcccccCcc
Confidence 9999999999999999999999999999999999987666665544322 233368999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccCCCCC
Q 005496 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (694)
Q Consensus 402 ~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~ 481 (694)
++||..|+.|++|+.|||||++++|++|.++|++|+.+++||++|+|++|++++.|++++++++ |.++||+|||||+|.
T Consensus 300 rsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~~-P~IrPR~fSIas~~~ 378 (574)
T KOG1159|consen 300 RSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDLL-PVIRPRAFSIASSPG 378 (574)
T ss_pred hHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHhc-cccccceeeeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999997
Q ss_pred CCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEEEecCccchhhHHH
Q 005496 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 561 (694)
Q Consensus 482 ~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsf 561 (694)
.++ ++|+|++|+|.+...+.|.|+||+||++|++| +.+++.+++|++.+|.+.++|+||||||||||||||+
T Consensus 379 ~~~--leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g------~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~ 450 (574)
T KOG1159|consen 379 AHH--LELLVAIVEYKTILKEPRRGLCSNWLASLKPG------DEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRAL 450 (574)
T ss_pred CCc--eeEEEEEEEEeeeccccccchhHHHHhhcCCC------CeEEEEEecCccccCCCCCCCeEEEcCCCCcccHHHH
Confidence 654 99999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHhHHHHHhccc-C
Q 005496 562 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLS-K 640 (694)
Q Consensus 562 lq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~-~ 640 (694)
+++|+.+ ...+..||||||++++||+|++||..+.+.+. +.|||||+++|+||||++.+.++.+|+++. .
T Consensus 451 i~er~~q-----~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~~ 521 (574)
T KOG1159|consen 451 IQERIYQ-----GDKENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQEQKVYVQHKIRENGEEVWDLLDNL 521 (574)
T ss_pred HHHHHhh-----ccCCceEEEecccCCccccccchhhhhhcchh----hhhcccccccceeHHHHHHHhhHHHHHHHhcc
Confidence 9999973 23455999999999999999999999877644 459999999999999999999999999887 7
Q ss_pred CcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 641 EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 641 ~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
||+|||||++..|.++|.++|.+|+.+.++.+.+.|. |++.|++++||+.|.|
T Consensus 522 gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 522 GAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred CCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 9999999999999999999999999999999766666 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.8e-113 Score=959.02 Aligned_cols=600 Identities=44% Similarity=0.755 Sum_probs=520.7
Q ss_pred hhhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhh-ccCCeEEEEEecCCC
Q 005496 73 EDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGD 151 (694)
Q Consensus 73 ~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l-~~~~~vif~~sTyG~ 151 (694)
.....++...+.+++|+|+|||||+|.+|..+.+.+ ++|. .+.+.+.+|+.-. + ...++++|+.+|||+
T Consensus 36 ~~~~~~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~---~~~~~~~d~~~~~------l~~~~~l~~~~~at~g~ 105 (645)
T KOG1158|consen 36 YSLKLKVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFE---LKVLKVADYDLYA------LEDHEKLLVVVLATYGE 105 (645)
T ss_pred hhHHHHhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhcc---ccceeecchhhcc------cccccceeeeeeehhcC
Confidence 456666777889999999999999999999999999 7766 6666666665544 4 456899999999999
Q ss_pred CCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHH
Q 005496 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (694)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W 231 (694)
|+||+|++.|.+|+.+.... ....++|+|||+||++|++||++++.+|++|+++|++|+..+|+|||+.+.|++|..|
T Consensus 106 gd~~dn~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w 183 (645)
T KOG1158|consen 106 GDPPDNAEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTW 183 (645)
T ss_pred CCCCccHHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHH
Confidence 99999999999999886432 2445899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCC--CCCCCCCCCCCCeeEEEEEeEEecCCC
Q 005496 232 RELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNM--PNGNASFDIHHPCRVNVAVRRELHKPD 309 (694)
Q Consensus 232 ~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~a~v~~~~~L~~~~ 309 (694)
++.+|+++++.+..+... . .+.......+.............+..... .+...+++..+||.+.++.++.|+++.
T Consensus 184 ~~~~~~~~~~~f~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (645)
T KOG1158|consen 184 KKPLLPELCETFSLEEDE-A--TKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPS 260 (645)
T ss_pred HHHHhHhhhheeeecccc-c--cCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCC
Confidence 999999999977544322 1 11111111111111000000000000011 113367889999999999999999988
Q ss_pred CCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCC-CCCCCCCCCCCCcccHHH
Q 005496 310 SDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGT-PRGSSLTPPFPGPCTLRT 388 (694)
Q Consensus 310 ~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~pfp~p~tl~~ 388 (694)
+.|+|+|+++++.++++.|+||||++|+|.|+.+.|++++++|+++++..+.++....+.+ +.....+.|||.|||+++
T Consensus 261 ~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~ 340 (645)
T KOG1158|consen 261 SDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRT 340 (645)
T ss_pred CceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHH
Confidence 8899999999999999999999999999999999999999999999876666555444322 334567889999999999
Q ss_pred HHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHhcCC
Q 005496 389 ALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPH 468 (694)
Q Consensus 389 ~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~p~~~ll~~~~p~ 468 (694)
+|++|+||+++|+|++|+.||.||+|+.||++|+.|+|++|+.+|.+|+...++|++|||.+||++++|+.++++++ |+
T Consensus 341 ~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~l-p~ 419 (645)
T KOG1158|consen 341 ALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLELL-PR 419 (645)
T ss_pred HHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHhC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEecCCCC-CcccCccchhhhhcCCCCCCCCccEEE--EEeeCCCcccCCCCCCC
Q 005496 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAP--IFIRPSNFKLPANPSVP 545 (694)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~--v~~~~g~F~lp~~~~~p 545 (694)
++||+|||||||..+++++|+++.++.+.+++| +.++|+||+||+++++| +.++ +.++.+.|+||.|+++|
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~------~~~~~~~~~~~s~frlp~dp~~P 493 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG------EKVPNPVPVGKSMFRLPSDPSTP 493 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc------cccCcceeecccceecCCCCCCc
Confidence 999999999999999999999999999999886 67889999999999999 5555 77778899999999999
Q ss_pred eEEEecCccchhhHHHHHHHHHHhhcCC-CCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCC-CCcccc
Q 005496 546 IIMVGPGTGLAPFRGFLQERMALKQDGA-QLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREG-SQKEYV 623 (694)
Q Consensus 546 iImIa~GTGIAPfrsflq~r~~~~~~~~-~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~-~~k~yV 623 (694)
|||||+||||||||||+|+|..++++|. ..+.+|||||||+++.||+|++||+++.+.|.++++.+||||++ ++|.||
T Consensus 494 iIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YV 573 (645)
T KOG1158|consen 494 IIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYV 573 (645)
T ss_pred EEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceeh
Confidence 9999999999999999999999887663 22238999999999999999999999999999999999999998 799999
Q ss_pred cchhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 624 QHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 624 q~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
||+|++++++||++|. ++|+||||||+++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 574 Qd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 574 QDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 9999999999999884 5999999999888999999999999999999999999999999999999999999
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=7.2e-109 Score=942.47 Aligned_cols=539 Identities=29% Similarity=0.497 Sum_probs=478.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
.+++|+|+|||||||||.+|++|++.+.++ |+.+++.++++++.++ |.+++.+||++||||+|+||+||..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~--g~~~~v~~~~d~~~~~------L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAA--KLNVNLVNAGDYKFKQ------IAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCCcEEechHhCCHhH------hccCCeEEEEECCCCCCCCChhHHHH
Confidence 467899999999999999999999999988 8999999999998877 88999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHHHHHHHh
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~L~~ 241 (694)
|+||..... ..|.+++||||||||++|++||.++|.+|++|+++||+|+.+++.+|. +++++|++|.+++|++|..
T Consensus 132 ~~~L~~~~~--~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~ 207 (600)
T PRK10953 132 HKFLFSKKA--PKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKS 207 (600)
T ss_pred HHHHhhCcC--cCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHh
Confidence 999976422 239999999999999999999999999999999999999999998775 4899999999999999987
Q ss_pred hhCCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 005496 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (694)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di 321 (694)
...... .+.. .. .. .. . . .....+++..+||.++|+.|++|+.++++|+|+||||||
T Consensus 208 ~~~~~~------~~~~---~~--~~----~~-~---~----~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl 264 (600)
T PRK10953 208 RAPAVA------APSQ---SV--AT----GA-V---N----EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDL 264 (600)
T ss_pred hcCCcc------cccc---cc--cc----cc-c---c----ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEec
Confidence 543211 0000 00 00 00 0 0 001235777899999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCc
Q 005496 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (694)
Q Consensus 322 ~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~ 401 (694)
++++++|+|||+|+|||+|+++.|+++|++||+++++.+.+.. .++|++++|++|+||+.+ +
T Consensus 265 ~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~-----------------~~~tl~~~l~~~~dl~~~-~ 326 (600)
T PRK10953 265 GDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG-----------------KTLPLAEALQWHFELTVN-T 326 (600)
T ss_pred CCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-----------------CCCCHHHHHHHhcccCCC-c
Confidence 9999999999999999999999999999999999998876631 267999999999999985 7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccCCCCC
Q 005496 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (694)
Q Consensus 402 ~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~ 481 (694)
+.+|+.++.+++++. |++|. ++++.+.+|.. .++++|||.+|| ++++++||++++ |+++||+|||||+|.
T Consensus 327 ~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~ll-~~l~pR~YSIaSsp~ 396 (600)
T PRK10953 327 ANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGLL-RPLTPRLYSIASSQA 396 (600)
T ss_pred HHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHhC-CCCCCeeeecccCCC
Confidence 899999999999854 44442 35667777764 689999999997 689999999999 999999999999998
Q ss_pred CCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeCC-CcccCCCCCCCeEEEecCccchhhH
Q 005496 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFR 559 (694)
Q Consensus 482 ~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfr 559 (694)
..+++++|||+++.+.. .|+.+.|+||+||.+ +++| +.|+|++++| .|++|.++++|+||||+||||||||
T Consensus 397 ~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfr 469 (600)
T PRK10953 397 EVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEE------GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFR 469 (600)
T ss_pred CCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCC------CEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHH
Confidence 77899999999998874 578889999999996 8888 8999999876 8999988889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHhHHHHHhccc
Q 005496 560 GFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLS 639 (694)
Q Consensus 560 sflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~ 639 (694)
||+|+|... + ..+++|||||||++..||+|++||++|.+.|.++++++||||++.+|+||||+|.++.+++|+++.
T Consensus 470 sflq~r~~~---~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~ 545 (600)
T PRK10953 470 AFMQQRAAD---G-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWIN 545 (600)
T ss_pred HHHHHHHHc---C-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999863 2 458999999999977799999999999999999999999999998899999999999999999999
Q ss_pred CCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 640 KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 640 ~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 546 ~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 546 DGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9999999999878999999999999999999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=3.2e-106 Score=925.25 Aligned_cols=538 Identities=33% Similarity=0.589 Sum_probs=479.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
.++|+|+|||||||||.+|+.|++++.++ |+.+++.++++++.++ +.+++.+||++||||+|+||+||..|+
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~--g~~~~v~~~~d~~~~~------l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAA--GFSVRLSSADDYKFKQ------LKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhC--CCccEEechHHCCHhh------cccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 57899999999999999999999999988 8999999999999887 889999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHHHHHHHhh
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~L~~~ 242 (694)
++|.+... ..|++++||||||||++|++||.++|.+|++|+++||+|+.|++.+|. +++++|++|.+++|+.|...
T Consensus 130 ~~L~~~~~--~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~ 205 (597)
T TIGR01931 130 KFLHSKKA--PKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQ 205 (597)
T ss_pred HHHHhCCC--cccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhh
Confidence 99986432 239999999999999999999999999999999999999999998886 48999999999999999775
Q ss_pred hCCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEec
Q 005496 243 LRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVS 322 (694)
Q Consensus 243 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~ 322 (694)
...... .|. +.+.. .. ......+|+..+||.++|+.|++|+..+++|+|+|||||++
T Consensus 206 ~~~~~~-----~~~------~~~~~---~~---------~~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~ 262 (597)
T TIGR01931 206 AKGSAS-----TPS------LSETP---AR---------SQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLE 262 (597)
T ss_pred ccCccC-----CCc------ceecc---cc---------cccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecC
Confidence 421110 111 11100 00 00122356778999999999999999999999999999999
Q ss_pred CCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcH
Q 005496 323 GTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRK 402 (694)
Q Consensus 323 ~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~ 402 (694)
+++++|+|||||+|||+|+++.|+++|++||++++..+++. +.++|++++|++|+||+. ++|
T Consensus 263 ~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----------------~~~~tl~~~l~~~~dl~~-~~~ 324 (597)
T TIGR01931 263 GSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----------------GKTIPLFEALITHFELTQ-NTK 324 (597)
T ss_pred CCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----------------CCCcCHHHHHHhceeCCC-CCH
Confidence 99999999999999999999999999999999999887653 136899999999999999 589
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccCCCCCC
Q 005496 403 AALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF 482 (694)
Q Consensus 403 ~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~~ 482 (694)
.+|+.||.+++|+..++.| ++++.|.+|+. .++++|||.+|| +++++|||++++ |+++||+|||||+|..
T Consensus 325 ~~l~~la~~~~~~~l~~~~------~~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~ll-~~~~~R~YSIaSsp~~ 394 (597)
T TIGR01931 325 PLLKAYAELTGNKELKALI------ADNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISLL-RPLTPRLYSISSSQSE 394 (597)
T ss_pred HHHHHHHHhcCCHHHHHHh------cCHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHhC-cccCCceeeeccCccc
Confidence 9999999999998655433 26777888885 689999999999 899999999999 9999999999999987
Q ss_pred CCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeCC-CcccCCCCCCCeEEEecCccchhhHH
Q 005496 483 APDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRG 560 (694)
Q Consensus 483 ~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs 560 (694)
++++++|+|+++.+.. .|+.+.|+||+||++ +++| +.|+|++++| .|++|.++.+|+||||+|||||||||
T Consensus 395 ~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 467 (597)
T TIGR01931 395 VGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEG------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRA 467 (597)
T ss_pred CCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCC------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHH
Confidence 7889999999998764 678889999999998 9998 8999999775 89999888899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHhHHHHHhcccC
Q 005496 561 FLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSK 640 (694)
Q Consensus 561 flq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~ 640 (694)
|+|+|... + ..++++||||||+..+|++|++||++|.+.+.++++++||||++..|+||||+|.++.+++|+++.+
T Consensus 468 flq~r~~~---~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~ 543 (597)
T TIGR01931 468 FMQERAED---G-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQE 543 (597)
T ss_pred HHHHHHHc---c-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhC
Confidence 99998863 2 4589999999999666999999999999999999999999998778999999999999999999888
Q ss_pred CcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 641 EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 641 ~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
+++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 544 ~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 544 GAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999996689999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-103 Score=885.34 Aligned_cols=541 Identities=38% Similarity=0.656 Sum_probs=490.5
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
++..++|+||||||||+.+|+.+++++... |..+.+.++++|+..+ +.....++|++||+|+|++|+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~--g~~~~~~~~~~~~~~~------~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAA--GLQVLVASLDDYKPKD------IAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhc--CCceeecchhhcChhh------HHhhhceEEEEccccCCCCCCchHHH
Confidence 577899999999999999999999999988 7889999999999988 55557899999999999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHHHHHHHh
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~L~~ 241 (694)
+++|.... ...|.+++|+||||||++|+.||.++|.++++|..+||+++.+++++|.. +.++....|.+.+++.|..
T Consensus 118 ~~~l~~~~--a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGKK--APKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhcccc--cccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 99998742 23499999999999999999999999999999999999999999999986 7899999999999999887
Q ss_pred hhCCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 005496 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (694)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di 321 (694)
.+........ .++. .+. ...++....|+.+.+..|++|+..+++|+|+||+||+
T Consensus 195 ~~~~~~~~~~--~~~~-----------~~~-------------~~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAAPA--QVAT-----------SPQ-------------SESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccccc--cccc-----------hhc-------------ccccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 5532211100 0000 000 0233445778899999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCc
Q 005496 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (694)
Q Consensus 322 ~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~ 401 (694)
++++++|+|||+++|||+|+++.|+++|..|||++++.+.++ +.+.++.++|.+|+|++..|
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----------------~~~~~~~~~l~~~~e~~~~~- 310 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----------------GETLPLVEALKSHFEFTSAP- 310 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------CCcchHHHHHHHheecccch-
Confidence 999999999999999999999999999999999998666331 34789999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccCCCCC
Q 005496 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (694)
Q Consensus 402 ~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~ 481 (694)
|+++..|+.|+.++..+++|+.++ ...++.|.. +++++|+|.+||++++|+++|++.+ |++.||+|||||+|.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~l-~~lkPR~YSIsSs~~ 383 (587)
T COG0369 311 KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDLL-PPLKPRLYSIASSPG 383 (587)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHhC-ccCCCeeeEeccCCC
Confidence 999999999999999999999885 566666666 8999999999999999999999999 999999999999999
Q ss_pred CCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCC-CcccCCCCCCCeEEEecCccchhhHH
Q 005496 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRG 560 (694)
Q Consensus 482 ~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs 560 (694)
.+++++||||.+|+|..+ ++.+.|+||+||+++.+.| +.++|+++++ +|++|.++.+||||||+|||||||||
T Consensus 384 ~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g-----~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRa 457 (587)
T COG0369 384 VSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEG-----DTIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRA 457 (587)
T ss_pred CCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCC-----CeEEEEeccCCccccCCCCCCceEEEcCCCCchhHHH
Confidence 999999999999999987 5589999999999988732 8999999998 99999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHhHHHHHhcccC
Q 005496 561 FLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSK 640 (694)
Q Consensus 561 flq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~ 640 (694)
|+|+|.... ..|++|||||||+.+.||+|++||++|.+.|.++++.+||||++..|.||||+|++++++||++|++
T Consensus 458 fvq~r~~~~----~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ 533 (587)
T COG0369 458 FVQERAANG----AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEE 533 (587)
T ss_pred HHHHHHhcc----ccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHC
Confidence 999999842 4569999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 641 EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 641 ~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
+|+||||||++.|+++|+++|.+|+.+.++++.++|++++++|++++||++|||
T Consensus 534 ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 534 GAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 999999998899999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.6e-81 Score=694.48 Aligned_cols=396 Identities=51% Similarity=0.909 Sum_probs=363.5
Q ss_pred CCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC-CccEEEEeeCCCCC
Q 005496 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS-LELLFSLHTDNEDG 369 (694)
Q Consensus 291 ~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~ 369 (694)
..+||.++|++|++|+.+ ++|+++||+||+++++++|+|||||+|+|+|+++.|+++|++||++ ++.++.+....+.
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~- 79 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEP- 79 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcc-
Confidence 467999999999999998 8899999999999889999999999999999999999999999999 8999988765531
Q ss_pred CCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHH
Q 005496 370 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 449 (694)
Q Consensus 370 ~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~ 449 (694)
.+...|+|.|+|++++|++|+||+++|+|.+|+.||.||+|+++|++|.+|+| +|+++|.+|+.++++|++|+|.
T Consensus 80 ----~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 80 ----ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----cccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 13467899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCC--C----
Q 005496 450 EFPSAT---PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLE--G---- 520 (694)
Q Consensus 450 ~fps~~---~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~--~---- 520 (694)
+||+++ +|++.|++.+ |+++||+|||||+|..+++.++|||+++.+.++.++.+.|+||+||+++.++. .
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999999 99999999999999888899999999999999999999999999999977310 0
Q ss_pred ---------CCCccEEEEEeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCccc
Q 005496 521 ---------NGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDF 591 (694)
Q Consensus 521 ---------~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ 591 (694)
...++.|++.++.|.|.+|.++.+|+||||+||||||||||++++.....++...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00128999999999999998878999999999999999999999876543343468999999999995599
Q ss_pred ccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHHHHccCC
Q 005496 592 IYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENV 671 (694)
Q Consensus 592 ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~ 671 (694)
+|++||++|.+.+.+++++++|||++..++||||+|.++.+++++++.++++||||||+..|+++|.++|.+|+++++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~ 393 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGM 393 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCCC
Confidence 99999999999888889999999998789999999999888999888888999999994449999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 005496 672 DSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 672 ~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
++++|++++++|+++|||++|||
T Consensus 394 ~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 394 TETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CHHHHHHHHHHHHHcCCeeEecC
Confidence 99999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=9e-80 Score=677.25 Aligned_cols=382 Identities=38% Similarity=0.693 Sum_probs=349.4
Q ss_pred EEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CccEEEEeeCCCCCCCCCCCC
Q 005496 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRGSSL 376 (694)
Q Consensus 299 v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 376 (694)
|+.+++||+++++++++||+||+++++++|+|||||+|||+|+++.|++++++||++ +|++++++....... .+..+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK-KNAKV 80 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc-ccccc
Confidence 678999999999999999999999889999999999999999999999999999999 788888875322111 11246
Q ss_pred CCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCC
Q 005496 377 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 456 (694)
Q Consensus 377 ~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~ 456 (694)
+.+||.|+|++++|++|+||+++|+|+||+.||.||+|+.+|++|.+|+|.+|+++|.+|+.+.++|++|||.+||++++
T Consensus 81 ~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 81 PVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcC-----CCCCCCCccEEEEEe
Q 005496 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI-----PLEGNGDCSWAPIFI 531 (694)
Q Consensus 457 p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~-----~g~~~~~~~~v~v~~ 531 (694)
|++.+++.+ |+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +| +.|.+.+
T Consensus 161 pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G------~~v~i~~ 227 (398)
T cd06203 161 PLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHG------VKVPFYL 227 (398)
T ss_pred CHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCC------CEEEEEE
Confidence 999999999 99999999999999877899999999987543 599999999988 77 8999999
Q ss_pred e-CCCcccCCC-CCCCeEEEecCccchhhHHHHHHHHHHhh--cCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCee
Q 005496 532 R-PSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQ--DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 607 (694)
Q Consensus 532 ~-~g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~--~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~ 607 (694)
+ .|.|.+|.+ +.+|+||||+||||||||||+|++....+ .+...++++||||||+++.|++|++||++|.+.|.++
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~ 307 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILT 307 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCc
Confidence 5 468999977 67999999999999999999999986432 1235689999999999955999999999999999999
Q ss_pred EEEEEEecCCC---CcccccchhHHhHHHHHhcc-cCCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 005496 608 ELILAFSREGS---QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 683 (694)
Q Consensus 608 ~l~~afSR~~~---~k~yVq~~l~~~~~~l~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 683 (694)
++++||||++. .++||||++.++.+++++++ +.+++||||||++.|+++|+++|.+|++++++++.++|++|+++|
T Consensus 308 ~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l 387 (398)
T cd06203 308 RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARL 387 (398)
T ss_pred eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999987 48999999999999999977 468999999997799999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 005496 684 QMEGRYLRDVW 694 (694)
Q Consensus 684 ~~~gRy~~Dvw 694 (694)
+++|||++|||
T Consensus 388 ~~~gRy~~dvw 398 (398)
T cd06203 388 RKEDRYLEDVW 398 (398)
T ss_pred HHcCCeeeecC
Confidence 99999999999
No 8
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=2.9e-79 Score=674.44 Aligned_cols=386 Identities=41% Similarity=0.718 Sum_probs=348.1
Q ss_pred EEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CccEEEEeeCCCCCCCCC--
Q 005496 299 VAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRG-- 373 (694)
Q Consensus 299 v~~~~~L~~~~~~r~~~hi~~di~~-~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~-- 373 (694)
|+.+++|++++++|+|+||+||+++ ++++|+|||||+|||+|+++.|+++|++||+. .+..+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 6789999999999999999999997 69999999999999999999999999999995 467888876444222111
Q ss_pred -CCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCC
Q 005496 374 -SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP 452 (694)
Q Consensus 374 -~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fp 452 (694)
....+++|.|+|++++|++|+||+++|+|++|+.||.||+|+.+|++|+.|++ ++++|.+|+.++++|++|+|.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 12335677799999999999999999999999999999999999999999976 888999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCC--CCcccCccchhhhhcCCCCCCCCccEEEEE
Q 005496 453 SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (694)
Q Consensus 453 s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~--g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 530 (694)
++++|++.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++++| +.|.|.
T Consensus 160 s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG------DTVPCF 232 (406)
T ss_pred cCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC------CEEEEE
Confidence 9999999999999 9999999999999987789999999999887654 456789999999999999 899999
Q ss_pred eeCC-CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhh----cCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCC
Q 005496 531 IRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV 605 (694)
Q Consensus 531 ~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~----~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~ 605 (694)
++.+ .|.+|.++.+|+||||+||||||||||||+|..+.+ .+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 8764 899998888999999999999999999999875421 22356899999999999559999999999999999
Q ss_pred eeEEEEEEecCCC-CcccccchhHHhHHHHHhcc-cCCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 005496 606 ISELILAFSREGS-QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 683 (694)
Q Consensus 606 ~~~l~~afSR~~~-~k~yVq~~l~~~~~~l~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 683 (694)
++++++||||++. .++||||+|.++.+++|+++ ..+++|||||| +.|+++|+++|.+|++++++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999865 58999999999999999987 67899999999 589999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 005496 684 QMEGRYLRDVW 694 (694)
Q Consensus 684 ~~~gRy~~Dvw 694 (694)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
No 9
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=1.7e-79 Score=672.59 Aligned_cols=380 Identities=40% Similarity=0.743 Sum_probs=354.3
Q ss_pred EEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCC
Q 005496 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 378 (694)
Q Consensus 299 v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (694)
|++|++|+.++++|+|+||+|++++++++|+|||||+|||+|+++.|+++|++||++++++++++..+. .+...
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~------~~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ------QRGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc------cccCC
Confidence 678999999999999999999998889999999999999999999999999999999999998876441 13466
Q ss_pred CCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCCCh
Q 005496 379 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPI 458 (694)
Q Consensus 379 pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~p~ 458 (694)
|||.|+|++++|++|+||+++|++++|+.||.||+|+++|++|.+|++.++.+.|.++ ++++++|+|.+||++++|+
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 8999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCccc
Q 005496 459 GVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL 538 (694)
Q Consensus 459 ~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~l 538 (694)
+.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++++| +.|.|.+|.|.|++
T Consensus 153 ~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~~p~g~F~l 225 (382)
T cd06207 153 EQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG------QRVTVFIKKSSFKL 225 (382)
T ss_pred HHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC------CEEEEEEECCcccC
Confidence 9999999 9999999999999987789999999999998888888999999999999999 89999999999999
Q ss_pred CCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCC
Q 005496 539 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 618 (694)
Q Consensus 539 p~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~ 618 (694)
|.+..+|+||||+||||||||||+|++..+.+++...++++||||||+++.|++|++||++|.+.+.++++++||||++.
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP 305 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 98878999999999999999999999987644444678999999999995599999999999999999999999999988
Q ss_pred CcccccchhHHhHHHHHhcccCC-cEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 619 QKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 619 ~k~yVq~~l~~~~~~l~~ll~~~-~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
.++||||++.++.+.+++++.++ ++||||||+..|+++|+++|.+++++++++++++|++++++|+++|||++|||
T Consensus 306 ~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 306 KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 89999999999888999888765 49999999434999999999999999999999999999999999999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=2.5e-76 Score=647.98 Aligned_cols=376 Identities=35% Similarity=0.615 Sum_probs=343.2
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCC
Q 005496 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (694)
Q Consensus 298 ~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (694)
+|+.|++|++++++|+|+||+|++++ +++|+|||+|+|+|+|+++.|+++|++||++++..++++.... ..+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~-------~~~ 72 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS-------ATG 72 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC-------CCC
Confidence 47889999999999999999999975 8999999999999999999999999999999999998876332 345
Q ss_pred CCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCCCCCCC
Q 005496 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 457 (694)
Q Consensus 378 ~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fps~~~p 457 (694)
.|+|.|+|++++|++|+||+++|+|+||+.||.||+|+.+|++|..++ +++|.+++..+++|++|+|.+||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 688999999999999999999999999999999999999999999884 5689999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCC-CcccCccchhhhhcCCCCCCCCccEEEEE--eeCC
Q 005496 458 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIF--IRPS 534 (694)
Q Consensus 458 ~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~v~--~~~g 534 (694)
+++|++++ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|+||+||.++++| +.|.|. .+.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPG------DSIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCC------CeEEEEEecCCC
Confidence 99999999 99999999999999777889999999998877665 56789999999999999 788875 4567
Q ss_pred CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEe
Q 005496 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (694)
Q Consensus 535 ~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afS 614 (694)
.|.+|.+..+|+||||+||||||||||++++......+...++++||||||+++.|++|++||++|.+.+.+ +++++||
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~S 300 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAYS 300 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEec
Confidence 999998778999999999999999999999987544444568999999999995599999999999986654 8999999
Q ss_pred cCCCC-cccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHCCCe
Q 005496 615 REGSQ-KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQE----NVDSSKAESIVKKFQMEGRY 689 (694)
Q Consensus 615 R~~~~-k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~gRy 689 (694)
|++.. ++||||++.+..+++++++.++++|||||| ++|+++|.++|.+|+.+++ +++.++|++++++|+++|||
T Consensus 301 r~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry 379 (384)
T cd06206 301 RPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRY 379 (384)
T ss_pred ccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCe
Confidence 98764 899999999988889888888999999999 5699999999999999999 99999999999999999999
Q ss_pred EEeeC
Q 005496 690 LRDVW 694 (694)
Q Consensus 690 ~~Dvw 694 (694)
++|||
T Consensus 380 ~~dvw 384 (384)
T cd06206 380 ATDVF 384 (384)
T ss_pred eeecC
Confidence 99999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=1.8e-73 Score=619.84 Aligned_cols=356 Identities=40% Similarity=0.645 Sum_probs=324.3
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCC
Q 005496 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (694)
Q Consensus 298 ~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (694)
+|+.|++|++++++|+++||+||+++++++|+|||||+|+|+|+++.|++++++||++++..+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 36789999999999999999999998899999999999999999999999999999999876531
Q ss_pred CCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHHhCC--CCC
Q 005496 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SAT 455 (694)
Q Consensus 378 ~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~~fp--s~~ 455 (694)
++|.|+|++++|++|+||+++ .++.|+.||+|+.++++|+. ++++.|.+ .++++|+|.+|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 356799999999999999997 55568899999999888875 67877764 589999999999 999
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhc-CCCCCCCCccEEEEEeeCC
Q 005496 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 534 (694)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~v~v~~~~g 534 (694)
+|+|||++++ |+++||+|||||+|..+++.++|+|+++.+.++ ++.+.|+||+||+++ ++| +.|.|++++|
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~G------d~v~v~~~~~ 203 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEG------DTVPVFVQPN 203 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCC------CEEEEEEecC
Confidence 9999999999 999999999999998778899999999987763 566789999999986 488 8999999776
Q ss_pred -CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 535 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 535 -~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
.|++|.++.+|+||||+||||||||||+|+++.. + ..++++||||||+++.|++|++||+++.+.+.++++++||
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---G-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 8999988789999999999999999999998763 2 4589999999999866999999999999999999999999
Q ss_pred ecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEee
Q 005496 614 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDV 693 (694)
Q Consensus 614 SR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dv 693 (694)
||++..++||||++.++.+++++++.++++||||||++.|+++|+++|.+|++++++++.++|++++++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999999999999888889999999954899999999999999999999999999999999999999999
Q ss_pred C
Q 005496 694 W 694 (694)
Q Consensus 694 w 694 (694)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1.2e-72 Score=632.19 Aligned_cols=369 Identities=37% Similarity=0.634 Sum_probs=332.8
Q ss_pred CCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeC
Q 005496 286 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 365 (694)
Q Consensus 286 ~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~ 365 (694)
...++..+||.++|+.|++|++++++|+++||+||+++++++|+|||||+|||+|+++.|+++|++||++++.++
T Consensus 160 ~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~----- 234 (530)
T PRK06214 160 PLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI----- 234 (530)
T ss_pred CCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----
Confidence 345778999999999999999999999999999999988999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHH
Q 005496 366 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 445 (694)
Q Consensus 366 ~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~ 445 (694)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.++.+.. ....+++
T Consensus 235 ----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vl 291 (530)
T PRK06214 235 ----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVL 291 (530)
T ss_pred ----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHH
Confidence 2789999999999999966 899999999998776 8888888664443321 1346899
Q ss_pred HHHHhCCCCCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCc
Q 005496 446 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDC 524 (694)
Q Consensus 446 dvl~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~ 524 (694)
|+|.+||++++|+++|++.+ |+++||+|||||+|..+++.++|+|+++.+.. .++.+.|+||+||+ ++++|
T Consensus 292 dvL~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~G------ 363 (530)
T PRK06214 292 AALEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPG------ 363 (530)
T ss_pred HHHHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCC------
Confidence 99999999999999999999 99999999999999877899999999998764 56778999999998 58898
Q ss_pred cEEEEEeeCC-CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHc
Q 005496 525 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (694)
Q Consensus 525 ~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~ 603 (694)
+.|.|+++.+ +|++|.++++|+||||+||||||||||+|+|.... ..++++||||||+.+.|++|++||++|.+.
T Consensus 364 d~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~----~~g~~~LffG~R~~~~D~ly~dEL~~l~~~ 439 (530)
T PRK06214 364 TRVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATK----APGRNWLFFGHQRSATDFFYEDELNGLKAA 439 (530)
T ss_pred CEEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc----CCCCeEEEEEecCChhhhHHHHHHHHHHHh
Confidence 8999988554 59999887899999999999999999999987632 357899999998877799999999999999
Q ss_pred CCeeEEEEEEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 005496 604 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 683 (694)
Q Consensus 604 g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 683 (694)
+.+++++++|||++..|+||||+|.++.+++|+++.++++||||||++.|+++|+++|.+|++++++++.++|++++++|
T Consensus 440 g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l 519 (530)
T PRK06214 440 GVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAEL 519 (530)
T ss_pred CCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999998889999999999999999999889999999997779999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 005496 684 QMEGRYLRDVW 694 (694)
Q Consensus 684 ~~~gRy~~Dvw 694 (694)
+++|||++|||
T Consensus 520 ~~~gRY~~Dvw 530 (530)
T PRK06214 520 KKAGRYQADVY 530 (530)
T ss_pred HHCCCEEEecC
Confidence 99999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=4.4e-49 Score=400.23 Aligned_cols=218 Identities=44% Similarity=0.783 Sum_probs=190.4
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCC
Q 005496 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (694)
Q Consensus 288 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (694)
||+.++||.|+|+.+++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.|+++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHH
Q 005496 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (694)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dv 447 (694)
. .....|||.|+|++++|++|+||+++|+|.||+.||.|++|+.+|++|++|++.+|+++|.+|+.+.+++++|+
T Consensus 82 ~-----~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 82 N-----NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp T-----SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred c-----cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 3 14678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchh
Q 005496 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 511 (694)
Q Consensus 448 l~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~ 511 (694)
|.+||++++|+++|++++ |+++||+|||||||..+++.++|||+++++.++.|+.+.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999 999999999999999999999999999999999999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=2.1e-42 Score=373.39 Aligned_cols=273 Identities=28% Similarity=0.478 Sum_probs=230.8
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCC
Q 005496 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (694)
Q Consensus 288 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (694)
.|..++||.++|+.|.+|+.++...+++||+|+.++ .+.|++|.+++|.|+..+
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~------------------------- 137 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID------------------------- 137 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC-------------------------
Confidence 377899999999999999998877899999999765 799999999999664210
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHH
Q 005496 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (694)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dv 447 (694)
.+|
T Consensus 138 -----------------------------------------------------------~~g------------------ 140 (367)
T PLN03115 138 -----------------------------------------------------------KNG------------------ 140 (367)
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 001
Q ss_pred HHhCCCCCCChHHHHHHhcCCCCCcccccCCCCCC---CCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCc
Q 005496 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (694)
Q Consensus 448 l~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~~---~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (694)
.+..+|+|||||+|.. .++.++|+|+.+.|.++.|+...|+||+||+++++|
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~G------ 195 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 195 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCc------
Confidence 1236799999999853 256899999988777777777899999999999999
Q ss_pred cEEEEEeeCCCc-ccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhHH
Q 005496 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (694)
Q Consensus 525 ~~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~del~~~~~ 602 (694)
+.|.|.+|.|.| .+|.++.+|+||||+||||||||||+++++...... ...++++||||||+.+ |++|++||+++.+
T Consensus 196 d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 196 AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 899999999965 456567789999999999999999999876532111 1247899999999998 9999999999988
Q ss_pred cC-CeeEEEEEEecCCC----CcccccchhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHH
Q 005496 603 EG-VISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 676 (694)
Q Consensus 603 ~g-~~~~l~~afSR~~~----~k~yVq~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a 676 (694)
.. .+++++.+|||++. .++|||++|.++.+++++++. ++++|||||+ ++|+++|.++|.+++..++ + ++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cH
Confidence 74 47899999999865 578999999999999999885 5789999999 8999999999999998764 4 47
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005496 677 ESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 677 ~~~~~~l~~~gRy~~Dvw 694 (694)
++++++|+++|||+.|||
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 899999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=8.2e-40 Score=341.97 Aligned_cols=218 Identities=50% Similarity=0.897 Sum_probs=194.3
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCC-CcccCCCCCCCeEE
Q 005496 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIM 548 (694)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piIm 548 (694)
.+|+|||+|+|...++.++|+|+.+.++.+.+..+.|.+|+||+++++| +.+.+.+|.| .|.++.+...|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~G------d~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLG------AKVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCC------CEEEEEEecCCcccCCCCCCCCEEE
Confidence 5689999999976568999999988776666666789999999999999 8999999999 99998877789999
Q ss_pred EecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCC-cccccchh
Q 005496 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKM 627 (694)
Q Consensus 549 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~-k~yVq~~l 627 (694)
||+|||||||++++++++....++...++++||||+|+.+.|++|++||++|.+.+.++++++++||+... ++||++.+
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l 200 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKL 200 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHHH
Confidence 99999999999999998764322334679999999999933999999999999988888999999998664 78999999
Q ss_pred HHhHHHHHhcccCCcEEEEeCCccc-hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 628 MDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 628 ~~~~~~l~~ll~~~~~iYvCG~a~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
.+..+.+++++.+++.|||||| +. |++.|.+.|.++++++++++.++|++++++|++.|||++|+|
T Consensus 201 ~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 201 KEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 8887777777777779999999 77 999999999999999999999999999999999999999999
No 16
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.2e-35 Score=316.74 Aligned_cols=274 Identities=26% Similarity=0.413 Sum_probs=218.2
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCC
Q 005496 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (694)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (694)
|....|+.++|+..+.++.|.+..++++|.|+.+. .+.|++|.++.|.++... . .
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-~~~f~aGQy~~l~~~~~~--~---------------------~- 73 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGTN--P---------------------K- 73 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC-CCceecCceEeeeCCCCC--h---------------------h-
Confidence 34577889999999999977766789999999764 799999999988543210 0 0
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHH
Q 005496 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (694)
Q Consensus 369 ~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl 448 (694)
..|
T Consensus 74 ----------------------------------------------------------~~g------------------- 76 (307)
T PLN03116 74 ----------------------------------------------------------KPG------------------- 76 (307)
T ss_pred ----------------------------------------------------------hcC-------------------
Confidence 000
Q ss_pred HhCCCCCCChHHHHHHhcCCCCCcccccCCCCCCC---CCeEEEEEEEEEecCCCCC----cccCccchhhhhcCCCCCC
Q 005496 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGR----IHKGVCSTWMKNAIPLEGN 521 (694)
Q Consensus 449 ~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~---~~~i~itv~vv~~~~~~g~----~~~G~~S~~L~~l~~g~~~ 521 (694)
.+...|+|||||+|... ...++|+|+++.+.++... ...|.+|+||+++++|
T Consensus 77 ------------------~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G--- 135 (307)
T PLN03116 77 ------------------APHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPG--- 135 (307)
T ss_pred ------------------CcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCC---
Confidence 12257999999999432 2379999998755444211 1579999999999999
Q ss_pred CCccEEEEEeeCCCccc-CC-CCCCCeEEEecCccchhhHHHHHHHHHHhhc-CCCCCCEEEEEeecCCCcccccHHHHH
Q 005496 522 GDCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELN 598 (694)
Q Consensus 522 ~~~~~v~v~~~~g~F~l-p~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~del~ 598 (694)
+.|.|.+|.|.|.+ |. +..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|++||+
T Consensus 136 ---d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~ 211 (307)
T PLN03116 136 ---DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFE 211 (307)
T ss_pred ---CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHH
Confidence 89999999998876 43 4567999999999999999999987653211 11247899999999998 999999999
Q ss_pred hhHHcCC-eeEEEEEEecCCC----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHHHHccCCCH
Q 005496 599 NFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDS 673 (694)
Q Consensus 599 ~~~~~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~ 673 (694)
+|.+... .++++.++||++. .++||+++|.+..++++..+..++.||+||| ++|+++|.+.|.+++.+. |++
T Consensus 212 ~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~-g~~- 288 (307)
T PLN03116 212 RYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER-GES- 288 (307)
T ss_pred HHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-Ccc-
Confidence 9998865 6789999999765 3679999998877777666666789999999 899999999999988765 454
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 005496 674 SKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 674 ~~a~~~~~~l~~~gRy~~Dvw 694 (694)
++++++.|+++|||++|||
T Consensus 289 --~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 289 --WEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred --HHHHHHHHHHcCceEEecC
Confidence 5689999999999999999
No 17
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.7e-35 Score=326.50 Aligned_cols=269 Identities=24% Similarity=0.442 Sum_probs=221.2
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCC
Q 005496 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (694)
Q Consensus 289 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (694)
|..++|+.++|+.+++|+......+++||.|+.++..+.|+||.++.|.++...
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~-------------------------- 190 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD-------------------------- 190 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--------------------------
Confidence 677889999999999999876667899999998766789999999998653210
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHH
Q 005496 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (694)
Q Consensus 369 ~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl 448 (694)
.++
T Consensus 191 ----------------------------------------------------------~~g------------------- 193 (411)
T TIGR03224 191 ----------------------------------------------------------ASG------------------- 193 (411)
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 001
Q ss_pred HhCCCCCCChHHHHHHhcCCCCCcccccCCCCCCC---CCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCcc
Q 005496 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCS 525 (694)
Q Consensus 449 ~~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~---~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~ 525 (694)
.+..+|+|||+|+|... .+.++|+|+++.. ...|+.+.|.+|+||+++++| +
T Consensus 194 ------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~G------d 248 (411)
T TIGR03224 194 ------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKG------D 248 (411)
T ss_pred ------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCc------C
Confidence 12357999999987421 2479999998863 345667789999999999999 8
Q ss_pred EEEEEeeCCC-cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcC
Q 005496 526 WAPIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 604 (694)
Q Consensus 526 ~v~v~~~~g~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g 604 (694)
.|.|.+|.|. |.+|..+.+|+||||+|||||||++|++++......+ ..++++||||+|+++ |++|.+||+++.+..
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~ 326 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF 326 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC
Confidence 9999999995 7777655689999999999999999999987643223 468999999999999 999999999998654
Q ss_pred CeeEEEEEEecCCC-CcccccchhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 005496 605 VISELILAFSREGS-QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 682 (694)
Q Consensus 605 ~~~~l~~afSR~~~-~k~yVq~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 682 (694)
. +++++|||++. .++|||+.+.++.+++++++. .++.||+||| ++|+++|.+.|.++..+. ++. .++++++
T Consensus 327 ~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~~~ 399 (411)
T TIGR03224 327 I--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLEPR 399 (411)
T ss_pred c--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHHHH
Confidence 3 56779999654 689999999988888887775 4589999999 899999999999999654 444 4679999
Q ss_pred HHHCCCeEEeeC
Q 005496 683 FQMEGRYLRDVW 694 (694)
Q Consensus 683 l~~~gRy~~Dvw 694 (694)
|+++|||+.|+|
T Consensus 400 l~~~~r~~~e~~ 411 (411)
T TIGR03224 400 LRAEGRLHLETY 411 (411)
T ss_pred HHHCCCeEEecC
Confidence 999999999999
No 18
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=2.9e-35 Score=310.93 Aligned_cols=271 Identities=29% Similarity=0.469 Sum_probs=219.7
Q ss_pred CCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCC
Q 005496 290 DIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDG 369 (694)
Q Consensus 290 ~~~~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 369 (694)
-.+.|+.++|+..+.|+++....++++++|+. +..+.|+||.++.|.++....
T Consensus 4 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~~~~~-------------------------- 56 (286)
T cd06208 4 KPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPPGTDA-------------------------- 56 (286)
T ss_pred CCCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECCCcch--------------------------
Confidence 35678889999999999776666899999997 457999999999885432100
Q ss_pred CCCCCCCCCCCCCcccHHHHHHhccccCCCCcHHHHHHHHHhCCCHHHHHHHHhcCCCCchhHHHHHHHhcCCCHHHHHH
Q 005496 370 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 449 (694)
Q Consensus 370 ~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~a~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~~l~dvl~ 449 (694)
..|
T Consensus 57 ---------------------------------------------------------~~g-------------------- 59 (286)
T cd06208 57 ---------------------------------------------------------KNG-------------------- 59 (286)
T ss_pred ---------------------------------------------------------hcC--------------------
Confidence 000
Q ss_pred hCCCCCCChHHHHHHhcCCCCCcccccCCCCCC---CCCeEEEEEEEEEecCCCC-CcccCccchhhhhcCCCCCCCCcc
Q 005496 450 EFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCS 525 (694)
Q Consensus 450 ~fps~~~p~~~ll~~~~p~l~pR~YSIsSsp~~---~~~~i~itv~vv~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~ 525 (694)
++..+|+|||||+|.. .++.++|+|+++...++.+ ..+.|.+|+||+++++| +
T Consensus 60 -----------------~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~G------d 116 (286)
T cd06208 60 -----------------KPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPG------D 116 (286)
T ss_pred -----------------CCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCC------C
Confidence 3346799999999854 2468999999887655443 34569999999999999 8
Q ss_pred EEEEEeeCCCcccC-CCCCCCeEEEecCccchhhHHHHHHHHHHhhc-CCCCCCEEEEEeecCCCcccccHHHHHhhHHc
Q 005496 526 WAPIFIRPSNFKLP-ANPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (694)
Q Consensus 526 ~v~v~~~~g~F~lp-~~~~~piImIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~ 603 (694)
.|.|.+|.|+|.+. .+..+|+||||+|||||||+||+++++..... ....++++||||+|+++ |++|++||+++.+.
T Consensus 117 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~ 195 (286)
T cd06208 117 DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPKQ 195 (286)
T ss_pred EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHHh
Confidence 99999999977554 44567999999999999999999998763211 11347899999999999 99999999999986
Q ss_pred C-CeeEEEEEEecCCC----CcccccchhHHhHHHHHhcccC-CcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHH
Q 005496 604 G-VISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAE 677 (694)
Q Consensus 604 g-~~~~l~~afSR~~~----~k~yVq~~l~~~~~~l~~ll~~-~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~ 677 (694)
. .+++++.++||++. .++||++.+.+..+++++.+.. +..||+||| ++|+++|.+.|.+++. ...+|+
T Consensus 196 ~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~~ 269 (286)
T cd06208 196 YPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAWE 269 (286)
T ss_pred CCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHHH
Confidence 4 46789999999764 4689999999877777776664 469999999 8999999999999986 235789
Q ss_pred HHHHHHHHCCCeEEeeC
Q 005496 678 SIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 678 ~~~~~l~~~gRy~~Dvw 694 (694)
+++++|+++|||+.|+|
T Consensus 270 ~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 270 EFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHcCCeEEecC
Confidence 99999999999999999
No 19
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.2e-34 Score=306.61 Aligned_cols=189 Identities=32% Similarity=0.641 Sum_probs=163.0
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEe-eCCCcccCCCCCCCeEEE
Q 005496 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI-RPSNFKLPANPSVPIIMV 549 (694)
Q Consensus 471 pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~-~~g~F~lp~~~~~piImI 549 (694)
+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.+ +.|.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~G------d~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPG------DTIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCc------CEEEEEeccCCCccCC-CCCCCEEEE
Confidence 58999999984 47899998853 259999999999999 8999986 56699887 456899999
Q ss_pred ecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHH
Q 005496 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMD 629 (694)
Q Consensus 550 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~ 629 (694)
|+|||||||++|++++. ..++++||||+|+++.|.+|++||+++.+.+.+++++.++||++ .++|||+++..
T Consensus 162 AgGtGIaP~~s~l~~~~-------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANA-------ARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhh-------ccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 99999999999998752 24689999999998558999999999999888888999999975 47899999988
Q ss_pred hHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 630 KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 630 ~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
..+.+..++.+++.||+||| ++|++.|.+.|.+|+.+++ + -+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 77777777777899999999 8999999999999997653 2 3888999999999998
No 20
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=4.5e-35 Score=302.74 Aligned_cols=211 Identities=33% Similarity=0.519 Sum_probs=179.6
Q ss_pred CCChHHHHHHhcCC-CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhc-CCCCCCCCccEEEEEee
Q 005496 455 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~v~v~~~ 532 (694)
...+|||+.+..+. ..+|+|||||+|. .+.++|+|+.+... .| ..|.+|+||++. ++| +.|.|.+|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~--~~--~~G~~S~~L~~~~~~G------d~v~i~gp 98 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA--DG--GLGLGSGWLTRHAPIG------ASVALRLR 98 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC--CC--CCeeechhhhhCCCCC------CEEEEEec
Confidence 34689999987342 6789999999985 47899999876421 12 359999999984 788 89999998
Q ss_pred CC-CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEE
Q 005496 533 PS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (694)
Q Consensus 533 ~g-~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~ 611 (694)
.| .|.+|. ..+|+||||+|||||||+||++++... ..++++||||||+.+.|++|.+||++|.+.+.++++++
T Consensus 99 ~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~-----~~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~ 172 (245)
T cd06200 99 ENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARA-----GRHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDL 172 (245)
T ss_pred CCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhc-----cCCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEE
Confidence 65 898875 568999999999999999999998752 23679999999998559999999999999999999999
Q ss_pred EEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCcc-chHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeE
Q 005496 612 AFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK-GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYL 690 (694)
Q Consensus 612 afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 690 (694)
++||++..++||++.+.++.+++++++..+++||+||| + +|+++|.+.|.+++.+ +.+++|+++|||+
T Consensus 173 ~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~ 241 (245)
T cd06200 173 AFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYR 241 (245)
T ss_pred EEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeE
Confidence 99998877899999999887777776666789999999 6 9999999999999964 3488999999999
Q ss_pred EeeC
Q 005496 691 RDVW 694 (694)
Q Consensus 691 ~Dvw 694 (694)
+|+|
T Consensus 242 ~d~~ 245 (245)
T cd06200 242 RDVY 245 (245)
T ss_pred EecC
Confidence 9999
No 21
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=2.4e-33 Score=266.70 Aligned_cols=144 Identities=25% Similarity=0.320 Sum_probs=130.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
|++|+|+|||||||||.+|++|++.+.++ |+.++++++.+ .++ +.+++++||++||||+|++|+|++.|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~--g~~~~~~~~~~--~~~------l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEA--GFSTETLHGPL--LDD------LSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHc--CCceEEeccCC--HHH------hccCCeEEEEECCCCCCCCChhHHHHH
Confidence 46899999999999999999999999987 88888887654 344 788999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHHHHHHHHHH
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W~~~l~~~L 239 (694)
++|++...+ |++++|+||||||++|++||.+++.++++|+++||+++.|++++|++. ..|++|++|.+.+|..|
T Consensus 71 ~~L~~~~~~---l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQKPD---LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhcCCC---CCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999875433 999999999999999999999999999999999999999999999875 47899999999988764
No 22
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=5.1e-33 Score=265.28 Aligned_cols=145 Identities=23% Similarity=0.357 Sum_probs=130.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
|++|.|+|||||||||.+|++|++++.+. |+.++++++++++... +.+.+.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~--g~~~~~~~~~~~~~~~------~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQ--GHEVTLFEDPELSDWQ------PYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCceEEechhhCCchh------cccCCeEEEEECCCCCCCCChhHHHHH
Confidence 45799999999999999999999999987 8889999988765433 455789999999999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHHHHHHHHHH
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W~~~l~~~L 239 (694)
++|++... .|++++|+|||||||+|++||.+++.++++|+++||+++.|++++|++. ++|+.|++|.++ |..+
T Consensus 73 ~~l~~~~~---~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDTAG---YQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhcCc---ccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 99987532 3999999999999999999999999999999999999999999999876 589999999998 7654
No 23
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=1.1e-32 Score=263.03 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=125.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhcc--CCeEEEEEecCCCCCCChhHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK--ETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~--~~~vif~~sTyG~G~~p~na~~F 161 (694)
++|+|+|||||||||.+|++|++++.++ |+.+.++. ..+..+ +.. .+.+||++||||+|+||+|+..|
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~--g~~~~~~~--~~~~~~------~~~~~~~~li~~~sT~G~Ge~Pd~~~~f 70 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAA--GFEAWHNP--RASLQD------LQAFAPEALLAVTSTTGMGELPDNLMPL 70 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHC--CCceeecC--cCCHhH------HHhCCCCeEEEEECCCCCCCCchhHHHH
Confidence 5799999999999999999999999876 67665543 233333 333 37899999999999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHHHHHHHHH
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W~~~l~~~ 238 (694)
+++|++... ..|++++|||||||||+| ++||.+++.++++|+++||+|+.+++++|++. ++|++|++|++.+|++
T Consensus 71 ~~~L~~~~~--~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~ 148 (151)
T PRK05723 71 YSAIRDQLP--AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAA 148 (151)
T ss_pred HHHHHhcCc--cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHH
Confidence 999986432 149999999999999999 89999999999999999999999999999884 6899999999999988
Q ss_pred HH
Q 005496 239 LD 240 (694)
Q Consensus 239 L~ 240 (694)
|.
T Consensus 149 l~ 150 (151)
T PRK05723 149 LK 150 (151)
T ss_pred hc
Confidence 73
No 24
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=9.1e-27 Score=220.66 Aligned_cols=138 Identities=39% Similarity=0.620 Sum_probs=121.6
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHH-HHHHHHh
Q 005496 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA-RFYKWFT 166 (694)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~-~F~~~L~ 166 (694)
|+|+|+|||||++|+.|+++|.++ |+.++++++++++.. ..++...+.++|++||||+|++|+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~--g~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRER--GVEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHT--TSEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHc--CCceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 899999999999999999999988 899999999999854 112888999999999999999999988 5666665
Q ss_pred ccC--CCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHH
Q 005496 167 EGN--DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAW 231 (694)
Q Consensus 167 ~~~--~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W 231 (694)
... .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 421 01134899999999999999988999999999999999999999999999987 789999999
No 25
>PRK07308 flavodoxin; Validated
Probab=99.93 E-value=2.8e-25 Score=211.65 Aligned_cols=140 Identities=22% Similarity=0.317 Sum_probs=121.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
|+++.|+|+|+|||||++|+.|++.+.+. |+.++++++++.+.++ +.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~--g~~~~~~~~~~~~~~~------l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLREL--GHDVDVDECTTVDASD------FEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhC--CCceEEEecccCCHhH------hccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 35799999999999999999999999877 8889999999887766 788999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCC--chHHHHHHHHHH
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQC--IEDDFTAWRELV 235 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~--~e~~~~~W~~~l 235 (694)
++|.+.. +++++++|||+||+.|+|||.+++.++++|+++|++++.+....|...+ ..+...+|.+.|
T Consensus 73 ~~l~~~~-----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADLD-----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcCC-----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9998754 8899999999999999999999999999999999999998888876532 233334454443
No 26
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.93 E-value=2.2e-25 Score=227.21 Aligned_cols=183 Identities=19% Similarity=0.303 Sum_probs=150.2
Q ss_pred CCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEee
Q 005496 454 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 454 ~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (694)
....+|||+.+..|....|+|||+|.|.. .+.++|+|+.+. .|.+|++|.+ +++| +.|.|.+|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAVP---------GGSFSDYVFEELKEN------GLVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEecC---------CCccHHHHHHhccCC------CEEEEecC
Confidence 34578999988767777999999999854 478999998652 4899999986 8998 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.++.+..+++||||+|||||||++++++.... + ...+++|+||+|+.+ |++|++||+++.+...+++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQ---G-SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhc---C-CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 999988766678999999999999999999988752 1 357899999999998 99999999999988788889999
Q ss_pred EecCCC----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+||+++ .++|+++.+.+... -..+..+|+||| +.|++++.+.|.+
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp-~~m~~~~~~~l~~ 211 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGS-PEMVYAARDDFVE 211 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhcc-----CccccEEEEECC-HHHHHHHHHHHHH
Confidence 998644 45677765543211 114678999999 8899999988865
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.93 E-value=2.9e-25 Score=225.07 Aligned_cols=188 Identities=29% Similarity=0.436 Sum_probs=150.9
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEe
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (694)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+. .|.+|+||+++++| +.+.|.+
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G------~~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPG------DEVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCC------CEEEEEC
Confidence 34689999987564 57899999999864 478999998653 59999999999998 8999999
Q ss_pred eCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEE
Q 005496 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (694)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~ 611 (694)
|.|+|.++.+..+|+||||+|||||||+++++++... + ..++++||||+|+.+ |++|++||+++.+.+.++++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD---K-PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhh---C-CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 9999876656678999999999999999999998752 1 467899999999998 9999999999999888889999
Q ss_pred EEecCCCCcccccchhHHhHHHHHhc-ccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 612 AFSREGSQKEYVQHKMMDKAAQLWSL-LSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 612 afSR~~~~k~yVq~~l~~~~~~l~~l-l~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+++|++....+.++.+..+....... ...+..+|+||| ++|++.+.+.|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 161 ALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred EecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99998765444444333211111111 235689999999 89999999888653
No 28
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.92 E-value=6.3e-25 Score=231.92 Aligned_cols=179 Identities=17% Similarity=0.323 Sum_probs=140.4
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEEEe
Q 005496 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVG 550 (694)
Q Consensus 471 pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa 550 (694)
.|+|||+|+|.. .+.++|+|++........+...|.+|+||+++++| +.|.|.+|.|.|.++ +..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~-~~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPG------DKVTASGPFGEFFIK-DTDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCC------CEEEEECcccccccc-CCCCcEEEEE
Confidence 499999999864 57899999875422110123369999999999999 899999999999886 3567999999
Q ss_pred cCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCC------Cccccc
Q 005496 551 PGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQ 624 (694)
Q Consensus 551 ~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~------~k~yVq 624 (694)
+|||||||++++++++.. +....+++||||+|+.+ |.+|.+||+++.+....+++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~---~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKT---LKSKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhc---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999987652 21246899999999998 99999999999988778889999998541 357888
Q ss_pred chhHHhHHHHHhcc-cCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 625 HKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 625 ~~l~~~~~~l~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+.+.+.. +.... ..+..+|+||| ++|++.+.+.|.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 7765432 11111 23568999999 89999999888653
No 29
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.92 E-value=7.4e-25 Score=226.99 Aligned_cols=186 Identities=19% Similarity=0.218 Sum_probs=143.0
Q ss_pred CCChHHHHHHhcC--C-CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEe
Q 005496 455 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 455 ~~p~~~ll~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (694)
...+|||+.+.++ . ...|+|||+|+|. .+.++|+|+.+. .|.+|+||+++++| +.|.|.+
T Consensus 30 ~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~g 92 (248)
T PRK10926 30 PFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVP---------EGKLSPRLAALKPG------DEVQVVS 92 (248)
T ss_pred CCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeC---------CCCcChHHHhCCCC------CEEEEec
Confidence 3468999877543 2 2369999999985 357888888652 59999999999999 8999999
Q ss_pred eC-CCcccCCC-CCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcC-CeeE
Q 005496 532 RP-SNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 608 (694)
Q Consensus 532 ~~-g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g-~~~~ 608 (694)
|. |.|.++.. ..+|+||||+|||||||+||++++... + ...+++||||+|+.+ |++|++||+++.+.. ..++
T Consensus 93 p~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~---~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~ 167 (248)
T PRK10926 93 EAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL---E-RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLR 167 (248)
T ss_pred CCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh---C-CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEE
Confidence 87 56777644 347999999999999999999987542 2 457899999999998 999999999998874 4668
Q ss_pred EEEEEecCCC---CcccccchhHHh-HHHHHh-cc-cCCcEEEEeCCccchHHHHHHHHHH
Q 005496 609 LILAFSREGS---QKEYVQHKMMDK-AAQLWS-LL-SKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 609 l~~afSR~~~---~k~yVq~~l~~~-~~~l~~-ll-~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+++++||++. .+++|++.+.+. ...... .+ .++..+|+||| ++|++++.+.|.+
T Consensus 168 v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~ 227 (248)
T PRK10926 168 IQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKE 227 (248)
T ss_pred EEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHH
Confidence 9999998654 246777655332 111111 12 24688999999 8999999987765
No 30
>PRK08051 fre FMN reductase; Validated
Probab=99.92 E-value=7.4e-25 Score=224.74 Aligned_cols=182 Identities=19% Similarity=0.238 Sum_probs=144.8
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchh-hhhcCCCCCCCCccEEEEEeeC
Q 005496 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW-MKNAIPLEGNGDCSWAPIFIRP 533 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~-L~~l~~g~~~~~~~~v~v~~~~ 533 (694)
...+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|..|.+ +.++++| +.|.|.+|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G------~~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKD------GEIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCC------CEEEEEcCC
Confidence 3578999888757777899999999854 477999888542 2444444 4668998 899999999
Q ss_pred CCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
|+|.++.+..+|+||||+||||||+++++++.+.. + ...+++|+||+|+.+ |.+|.+||+++++....++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~---~-~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQ---G-PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHh---C-CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 99988766668999999999999999999998752 2 457899999999999 999999999999987778899999
Q ss_pred ecCCC----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHH-HH
Q 005496 614 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL-HT 663 (694)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L-~~ 663 (694)
|++++ .++||++.+.+... . ..+..+|+||| ++|+++|.+.| .+
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~m~~~v~~~l~~~ 216 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGR-FEMAKIARELFCRE 216 (232)
T ss_pred CCCCCCcccceeeehHHHHhhcc---C--cccCEEEEECC-HHHHHHHHHHHHHH
Confidence 98654 35677766543211 1 13468999999 89999999887 54
No 31
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.92 E-value=1e-24 Score=224.47 Aligned_cols=183 Identities=24% Similarity=0.344 Sum_probs=147.1
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEEee
Q 005496 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~~ 532 (694)
...+|||+.+..|.. .+|+|||+|.|.. .+.++|+|+++. .|.+|+||+ ++++| +.|.|.+|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLVP---------GGIATTYVHKQLKEG------DELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEECC---------CCcchhhHhhcCCCC------CEEEEECC
Confidence 357899988875655 5899999999864 478999998642 599999997 58998 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|+|.++.+..+|+||||+|||||||++++++... ++ ...+++||||+|+.+ |.+|.+||+++.+....++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLE---RG-DTRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 99998876656899999999999999999999765 22 346899999999998 99999999999988777789999
Q ss_pred EecCCC------CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~------~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+||+.. .++|+++.+.+... -..++..+|+||| ++|++.+.+.|.+
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~~----~~~~~~~vyvCGp-~~m~~~~~~~L~~ 225 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHFK----NDFRGHKAYLCGP-PPMIDACIKTLMQ 225 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhcc----cccccCEEEEECC-HHHHHHHHHHHHH
Confidence 998643 24566654433210 0113578999999 8999999988875
No 32
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.92 E-value=7.3e-25 Score=237.27 Aligned_cols=181 Identities=18% Similarity=0.274 Sum_probs=148.2
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEEeeCC
Q 005496 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPS 534 (694)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~~~g 534 (694)
..+|||+.+..|....|+|||+|+|.. .+.++|+|+.+. .|.+|+||. .+++| +.+.+.+|.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~l~~~l~~G------~~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHMP---------GGVFTDHVFGALKER------DILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEecC---------CCccHHHHHHhccCC------CEEEEEcCce
Confidence 467999998767667899999999864 478999998542 599999997 58998 8999999999
Q ss_pred CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEe
Q 005496 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (694)
Q Consensus 535 ~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afS 614 (694)
.|.++.+..+|+||||+|||||||++++++.... + ...+++||||+|+.+ |++++++|++|.+....++++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~---~-~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAK---G-IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHhc---C-CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 9998866678999999999999999999998752 2 346899999999998 9989999999988777788999999
Q ss_pred cCCC------CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 615 REGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 615 R~~~------~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
|+.+ .++||++.+.+... + ..+..+|+||| ++|++.+.+.|.+
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~~---~--~~~~~vy~CGp-~~m~~~~~~~l~~ 319 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDFP---D--LSGHQVYACGS-PVMVYAARDDFVA 319 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhcc---c--ccCCEEEEECC-HHHHHHHHHHHHH
Confidence 8532 35677766543221 1 13578999999 8999999988865
No 33
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.92 E-value=1.3e-23 Score=226.81 Aligned_cols=169 Identities=15% Similarity=0.279 Sum_probs=135.4
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEEE
Q 005496 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (694)
Q Consensus 471 pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImI 549 (694)
.|+|||+|+|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.|.+|.|.|.++.+...|+|||
T Consensus 54 ~R~ySias~p~~-~~~l~i~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~gP~G~f~l~~~~~~~~vli 117 (332)
T PRK10684 54 LRAYTLSSTPGV-SEFITLTVRRID---------DGVGSQWLTRDVKRG------DYLWLSDAMGEFTCDDKAEDKYLLL 117 (332)
T ss_pred eeeecccCCCCC-CCcEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEeCCccccccCCCCCCcEEEE
Confidence 489999999854 467999998542 599999997 59999 8999999999999886667899999
Q ss_pred ecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHH
Q 005496 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMD 629 (694)
Q Consensus 550 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~ 629 (694)
|+|||||||++|+++.+.. + ...+++|+||+|+++ |++|.+||+++.+....+++++..+++. .++|.++++.+
T Consensus 118 AgG~GItP~~sml~~~~~~---~-~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~~~~-~~~~~~grl~~ 191 (332)
T PRK10684 118 AAGCGVTPIMSMRRWLLKN---R-PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLVAENNA-TEGFIAGRLTR 191 (332)
T ss_pred ecCcCcchHHHHHHHHHhc---C-CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEEeccCC-CCCccccccCH
Confidence 9999999999999987652 2 357899999999998 9999999999998766667777776643 35566776653
Q ss_pred hHHHHHhccc--CCcEEEEeCCccchHHHHHHHHHHH
Q 005496 630 KAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 630 ~~~~l~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
. .+.+.+. .+..+|+||| ++|++.+.+.|.+.
T Consensus 192 ~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 192 E--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred H--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 2 2222222 2578999999 89999999888653
No 34
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.91 E-value=2.9e-24 Score=218.54 Aligned_cols=181 Identities=20% Similarity=0.294 Sum_probs=147.8
Q ss_pred CChHHHHHHhcCCC--CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEee
Q 005496 456 PPIGVFFAAVAPHL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 456 ~p~~~ll~~~~p~l--~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (694)
..+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+... .|.+|+||.+ +++| +.+.|.+|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAVP---------GGRVSNALHDELKVG------DRVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeCC---------CCcchHHHhhcCccC------CEEEEeCC
Confidence 46799988875654 3799999999865 478999998542 5999999998 9999 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.++.+...++||||+|||||||++++++... ++ ...+++|+|++|+.+ |++|.+||+++.+...+++++.+
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~---~~-~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALR---RG-EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 99998876556899999999999999999999775 22 457899999999998 99999999999988777888888
Q ss_pred EecCCC----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+++++. .++|+++.+.+... -..+..+|+||+ ++|++.|.+.|.+
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp-~~~~~~v~~~l~~ 211 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGP-PAMVDATVDALLA 211 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECC-HHHHHHHHHHHHH
Confidence 888643 45677776654221 014679999999 8999999988865
No 35
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.91 E-value=3.5e-24 Score=219.33 Aligned_cols=186 Identities=20% Similarity=0.168 Sum_probs=147.8
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEee
Q 005496 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (694)
...+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+. .|.+|+||++ +++| +.+.|.+|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~~---------~G~~s~~l~~~~~~g------~~v~v~gP 86 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRKP---------GGAASNALFDNLEPG------DELELDGP 86 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEcC---------CCcchHHHhhcCCCC------CEEEEECC
Confidence 357899998876766 7899999999864 578999998542 5899999987 6888 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.++.+..+++||||+|||||||++++++..... .....+++|+||+|+.+ |++|++||+++.+.+..++++.+
T Consensus 87 ~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 163 (232)
T cd06190 87 YGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPA 163 (232)
T ss_pred cccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEE
Confidence 9988876555679999999999999999999977521 12457899999999988 99999999999998888889999
Q ss_pred EecCCCC--------cccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 613 FSREGSQ--------KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 613 fSR~~~~--------k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+|+++.. ++|+++.+.+.. .....+..||+||| ++|++.+.+.|.+.
T Consensus 164 ~s~~~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 164 VSDAGSGSAAGWDGPTGFVHEVVEATL----GDRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred eCCCCCCcCCCccCCcCcHHHHHHhhc----cCCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 9886532 345555443321 11124679999999 88999999887654
No 36
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.91 E-value=3.9e-24 Score=219.60 Aligned_cols=183 Identities=25% Similarity=0.342 Sum_probs=146.7
Q ss_pred CCChHHHHHHhcCC-CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEee
Q 005496 455 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (694)
...+|||+.+..|. ...|+|||+|+|.. .+.++|+|+... .|.+|+||.+ +++| +.+.|.+|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~~---------~G~~s~~l~~~~~~G------d~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLLP---------GGAFSTYLETRAKVG------QRLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEcC---------CCccchhhhhCcCCC------CEEEEecC
Confidence 34789999886464 35799999999864 468999888542 4999999998 9999 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.++.+..+++||||+|||||||+++++++... + ...+++||||+|+.+ |.+|.+||+++.+...+++++.+
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEW---G-EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhc---C-CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765567999999999999999999997652 2 347899999999988 99999999999988778889999
Q ss_pred EecCCC----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+||++. .++++++.+.+. +.. ......+|+||| ++|++.+.+.|.+
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~---l~~-~~~~~~vyicGp-~~m~~~~~~~l~~ 222 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALRED---LAS-SDAKPDIYLCGP-PGMVDAAFAAARE 222 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHh---hcc-cCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 998643 345665544332 111 123568999999 8999999988865
No 37
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.91 E-value=4.1e-24 Score=218.34 Aligned_cols=180 Identities=25% Similarity=0.346 Sum_probs=147.2
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEee
Q 005496 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (694)
...+|||+.+..|.. ..|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.+.|.+|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLLP---------GGAMSSYLRDRAQPG------DRLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEcC---------CCcchhhHHhccCCC------CEEEEECC
Confidence 346899998865654 4799999998854 78999988542 5999999999 9998 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.++.. .+|++|||+||||||+++++++.... + ..++++|+||+|+.+ |++|.+||+++.+....++++.+
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAED---G-SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhc---C-CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 999887643 48999999999999999999997752 2 457899999999988 99999999999988777889999
Q ss_pred EecCCC---CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~---~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+||+.. .++|+++.+.+.. +...+..+|+||| ++|++.|++.|.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~ 214 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDE 214 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 998654 4567887665431 1123578999999 8999999988865
No 38
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.91 E-value=3.5e-24 Score=236.98 Aligned_cols=183 Identities=16% Similarity=0.243 Sum_probs=144.5
Q ss_pred CChHHHHHHhcC--C--C-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEE
Q 005496 456 PPIGVFFAAVAP--H--L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (694)
Q Consensus 456 ~p~~~ll~~~~p--~--l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v 529 (694)
..+|||+.+.++ . . .+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +++| +.|.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~G------d~v~v 247 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVG------DVLEL 247 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCC------CEEEE
Confidence 367898888643 1 1 349999999985 36788888743 24999999987 9999 89999
Q ss_pred EeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEE
Q 005496 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (694)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l 609 (694)
.+|.|.|.++.+..+|+||||+|||||||++++++.... + ...+++||||+|+.+ |++|++||+++.+...++++
T Consensus 248 ~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~ 322 (399)
T PRK13289 248 AAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQ---Q-PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKA 322 (399)
T ss_pred EcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEE
Confidence 999999999876678999999999999999999997652 2 457999999999998 99999999999988777889
Q ss_pred EEEEecCCCC----ccccc-chhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHH
Q 005496 610 ILAFSREGSQ----KEYVQ-HKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 610 ~~afSR~~~~----k~yVq-~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+.++||+... ..|++ .++.+ +.+.+.+. .+..+||||| ++|++.|.+.|.+
T Consensus 323 ~~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~ 379 (399)
T PRK13289 323 HTWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLE 379 (399)
T ss_pred EEEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 9999986431 12222 23321 23333343 4689999999 8999999988765
No 39
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.91 E-value=4.6e-24 Score=218.59 Aligned_cols=182 Identities=22% Similarity=0.356 Sum_probs=146.1
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEee
Q 005496 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~ 532 (694)
...+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +.+.+.+|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKYP---------GGLFSSFLDDGLAVG------DPVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCchhhHHhhcCCCC------CEEEEEcC
Confidence 346899988865653 5899999999865 478999998642 5899999997 9998 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.++.+...++||||+|||||||++++++.... + ..++++|+||+|+.+ |++|.+||+++.+....++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAAS---G-SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhc---C-CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 999988765568999999999999999999997752 2 456899999999998 99999999999987777788889
Q ss_pred EecCCC------CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~------~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+||+.. ..+++++.+.+... + + ++..+|+||| ++|++.+.+.|.+
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~~---~-~-~~~~v~~CGp-~~~~~~v~~~l~~ 218 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNEA---T-L-AGCDVYLCGP-PPMIDAALPVLEM 218 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhcc---C-c-cCCEEEEECC-HHHHHHHHHHHHH
Confidence 998643 23556554432211 1 1 3678999999 8999999988765
No 40
>PRK06703 flavodoxin; Provisional
Probab=99.91 E-value=1.5e-23 Score=200.77 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=128.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
+++++|+|+|+||||+++|+.|++++.+. |+.+++.++++.+..+ +.+++.+||++||||.|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAF--DHEVVLQEMDGMDAEE------LLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhc--CCceEEEehhhCCHHH------HhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 46899999999999999999999999877 8889999998887666 888999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCC---CchHHHHHHHHHHHHHH
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPEL 239 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~---~~e~~~~~W~~~l~~~L 239 (694)
++|.... +++++++|||+||+.|++||.+++.++++|+++|++++.+....+... ...+...+|.+.+...+
T Consensus 73 ~~l~~~~-----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcCC-----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 9998654 789999999999999999999999999999999999988877766543 23456678888887666
Q ss_pred Hhh
Q 005496 240 DQL 242 (694)
Q Consensus 240 ~~~ 242 (694)
.++
T Consensus 148 ~~~ 150 (151)
T PRK06703 148 AQM 150 (151)
T ss_pred Hhc
Confidence 553
No 41
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.91 E-value=5.2e-24 Score=236.05 Aligned_cols=180 Identities=17% Similarity=0.302 Sum_probs=143.9
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEE
Q 005496 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (694)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piIm 548 (694)
...|+|||+|.|.. .+.++|+|+++......++...|.+|+||+++++| +.+.|.+|.|.|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPG------DKVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCC------CEEEEEccccCcEec-CCCceEEE
Confidence 35799999999865 46899999976544433445579999999999999 899999999999876 45689999
Q ss_pred EecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCC------Cccc
Q 005496 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEY 622 (694)
Q Consensus 549 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~------~k~y 622 (694)
||+|||||||++++++.+... ....+++||||+|+++ |.+|.+||+++.+...++++++++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~---~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRL---KSKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 999999999999999876521 1346899999999998 99999999999988788889999998542 3467
Q ss_pred ccchhHHhHHHHHhcc-cCCcEEEEeCCccchHHHHHHHHHH
Q 005496 623 VQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 623 Vq~~l~~~~~~l~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+++.+.+.. +.+.. ..+..||+||| ++|++.+.+.|.+
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~ 394 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKD 394 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHH
Confidence 777665432 11111 13578999999 8999999988865
No 42
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.91 E-value=4.3e-24 Score=218.64 Aligned_cols=185 Identities=21% Similarity=0.353 Sum_probs=142.7
Q ss_pred CChHHHHHHhcC--C-CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEEe
Q 005496 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 456 ~p~~~ll~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~ 531 (694)
..+|||+.+.++ . ..+|+|||+|.|. .+.++|+|+.+. .|.+|+||+ ++++| +.+.|.+
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~---------~G~~s~~l~~~~~~G------d~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVP---------GGRVSNYLREHIQPG------MTVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECC---------CCccchHHHhcCCCC------CEEEEeC
Confidence 468999877543 2 3479999999986 578999998542 489999998 59999 8999999
Q ss_pred eCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEE
Q 005496 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (694)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~ 611 (694)
|.|.|.++.....++||||+||||||+++++++.... ....+++||||+|+++ |++|++||+++.+....++++.
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQT----APESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhc----CCCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 9999998766668999999999999999999987652 1357899999999998 9999999999998777788999
Q ss_pred EEecCCCCcccccchhHHhHHHHHhccc--CCcEEEEeCCccchHHHHHHHHHH
Q 005496 612 AFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 612 afSR~~~~k~yVq~~l~~~~~~l~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
++||++....+...+.....+....++. .++.+|+||| ++|++++.+.|.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred EECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 9999754322222221111111111232 2479999999 8999999988854
No 43
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.91 E-value=6.4e-24 Score=229.86 Aligned_cols=179 Identities=22% Similarity=0.327 Sum_probs=147.3
Q ss_pred CChHHHHHHhcCCCC-CcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeC
Q 005496 456 PPIGVFFAAVAPHLQ-PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (694)
Q Consensus 456 ~p~~~ll~~~~p~l~-pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~ 533 (694)
..+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +.|.|.+|.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~L~~~l~~G------~~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLLP---------DGVMSNYLRERCQVG------DEILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEECC---------CCcchhhHhhCCCCC------CEEEEEcCc
Confidence 468999988656543 799999999864 578999998652 5899999974 9999 899999999
Q ss_pred CCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
|.|.++. ..+|+||||+|||||||++++++... .+ ..++++||||+|+++ |++|.+||++|.+...+++++.++
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAE---QG-CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHH---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 9998864 35899999999999999999998775 22 346899999999998 999999999999887788999999
Q ss_pred ecCCC----CcccccchhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHH
Q 005496 614 SREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
|++++ .++||++++.+.. +. ....||+||| ++|++.+.+.|.+
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~~------l~~~~~~vy~CGp-~~mv~~~~~~L~~ 322 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKAQ------LRDQAFDMYLCGP-PPMVEAVKQWLDE 322 (340)
T ss_pred eCCCCcCCCceeeccHHHHHhh------cCcCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 87643 4577877665321 22 3468999999 8999999988865
No 44
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.91 E-value=6.7e-24 Score=234.90 Aligned_cols=179 Identities=18% Similarity=0.325 Sum_probs=141.4
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEEE
Q 005496 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (694)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImI 549 (694)
..|+|||+|+|.. .+.++|+|+++.+.....+...|.+|+||+++++| +.+.|.+|.|.|.++. ..+|+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPG------DKVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCc------CEEEEEeccCCCeecC-CCCCEEEE
Confidence 4699999999965 57899999976332212233469999999999999 8999999999998863 56899999
Q ss_pred ecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCC------Ccccc
Q 005496 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYV 623 (694)
Q Consensus 550 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~------~k~yV 623 (694)
|+|||||||++|+++.+... ....+++||||+|+++ |.+|.+||+++.+...++++++++||+++ .+++|
T Consensus 277 AgGtGIaP~lsmi~~~l~~~---~~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRL---KSKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhcC---CCCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 99999999999999876521 2356899999999998 99999999999988888889999997542 34677
Q ss_pred cchhHHhHHHHHhcc-cCCcEEEEeCCccchHHHHHHHHHH
Q 005496 624 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 624 q~~l~~~~~~l~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
++.+.+. .+.+.. ..++.||+||| ++|++.+.+.|.+
T Consensus 353 ~~~l~~~--~l~~~~~~~~~~vylCGP-~~m~~av~~~L~~ 390 (405)
T TIGR01941 353 HNVLYEN--YLKDHDAPEDCEFYMCGP-PMMNAAVIKMLED 390 (405)
T ss_pred CHHHHHh--hhcccCCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 7766432 121111 24578999999 8999999988865
No 45
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.91 E-value=4.8e-24 Score=225.73 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=141.8
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCC
Q 005496 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (694)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~ 535 (694)
..+|||+.+..|....|+|||+|+|.. .+.++|+|+. .|.+|+||+++++| +.+.|.+|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEG------DIVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCC------CEEEEeCCCCC
Confidence 468999988656655799999999854 4789999973 38999999999999 89999999996
Q ss_pred -cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEe
Q 005496 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (694)
Q Consensus 536 -F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afS 614 (694)
|.++....+|+||||+|||||||++++++++.. +....+++||||+|+.+ |++|++||+++.+....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~---~~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDN---RWKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhc---CCCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 766544457999999999999999999987752 21347899999999998 9999999999988777788999999
Q ss_pred cCCCCc---------------ccccchhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHHH
Q 005496 615 REGSQK---------------EYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 615 R~~~~k---------------~yVq~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
|++... +++.+.+.+. ..+ .+..+|+||| ++|++.+.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 865421 2222222110 121 3568999999 89999999888653
No 46
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.91 E-value=7.3e-24 Score=218.42 Aligned_cols=186 Identities=20% Similarity=0.273 Sum_probs=148.0
Q ss_pred CChHHHHHHhcCCC----CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEE-
Q 005496 456 PPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 530 (694)
Q Consensus 456 ~p~~~ll~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~- 530 (694)
..+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+++. .|.+|+||+++++| +.+.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~G------d~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPG------DTIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCC------CEEEECc
Confidence 46799888754542 4699999999854 68999887652 59999999999999 899999
Q ss_pred eeCCCcccCCC-CCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHc-CCeeE
Q 005496 531 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISE 608 (694)
Q Consensus 531 ~~~g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~-g~~~~ 608 (694)
+|.|.|.++.. ...++||||+|||||||++++++.... ...++++||||+|+.+ |.+|++||+++.+. ...++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~----~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW----ERFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh----CCCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 99999998765 357999999999999999999987642 1457899999999998 99999999999887 66778
Q ss_pred EEEEEecCCCC---cccccchhHH-hHHHHHhc--ccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 609 LILAFSREGSQ---KEYVQHKMMD-KAAQLWSL--LSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 609 l~~afSR~~~~---k~yVq~~l~~-~~~~l~~l--l~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
++.++||++.. ++|+++.+.. ........ ..++..||+||| ++|++.+.+.|.+.
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 223 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEK 223 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHc
Confidence 88899987653 5778776652 11111111 124678999999 89999999888664
No 47
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=7.5e-23 Score=207.53 Aligned_cols=162 Identities=20% Similarity=0.302 Sum_probs=127.6
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEEE
Q 005496 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (694)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImI 549 (694)
..|+|||+|+|.. +.++|+|+++. ..|..|.||.++++| +.+.+.+|.|.|.++ .|+|||
T Consensus 46 ~~r~ySi~s~~~~--~~l~~~vk~~~--------~~g~~s~~l~~l~~G------~~v~i~gP~G~~~~~----~~~vli 105 (218)
T cd06196 46 EKRPFTFTSLPED--DVLEFVIKSYP--------DHDGVTEQLGRLQPG------DTLLIEDPWGAIEYK----GPGVFI 105 (218)
T ss_pred cccccccccCCCC--CeEEEEEEEcC--------CCCcHhHHHHhCCCC------CEEEEECCccceEec----CceEEE
Confidence 5689999999853 78999998642 136679999999999 899999999998763 589999
Q ss_pred ecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHH
Q 005496 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMD 629 (694)
Q Consensus 550 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~ 629 (694)
|+|||||||+++++++.. .+ ...+++|+||+|+.+ |++|++||+++.. ++++.++||++. ..|.+.++.+
T Consensus 106 a~GtGiaP~~s~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~~~~s~~~~-~~~~~g~~~~ 175 (218)
T cd06196 106 AGGAGITPFIAILRDLAA---KG-KLEGNTLIFANKTEK-DIILKDELEKMLG----LKFINVVTDEKD-PGYAHGRIDK 175 (218)
T ss_pred ecCCCcChHHHHHHHHHh---CC-CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceEEEEEcCCCC-CCeeeeEECH
Confidence 999999999999999875 22 456799999999998 9999999999853 356778888654 3455666543
Q ss_pred hHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHHH
Q 005496 630 KAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 630 ~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+.+.+++. .++.+|+||| ++|++++.+.|.+.
T Consensus 176 --~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 176 --AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred --HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 22333343 3578999999 89999999888653
No 48
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.90 E-value=1.9e-23 Score=212.45 Aligned_cols=183 Identities=21% Similarity=0.263 Sum_probs=143.9
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeC
Q 005496 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~ 533 (694)
...+|||+.+..|....|+|||+|+|.. .+.++|+|+.+. .|.+|+||++ +++| +.+.|.+|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~gP~ 86 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRKP---------NGAFSGWLGEEARPG------HALRLQGPF 86 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEecc---------CCccchHHHhccCCC------CEEEEecCc
Confidence 3467999998767777899999999865 367898887542 4999999998 6998 899999999
Q ss_pred CCcccCC-CCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 534 SNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 534 g~F~lp~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
|.|.+.. +...++||||+|||||||++++++++.+ + ..++++||||+|+.+ |++|++||+++.+....++++.+
T Consensus 87 G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 87 GQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ---G-HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc---C-CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEE
Confidence 9877653 4567999999999999999999987752 2 457899999999999 99999999999987767788888
Q ss_pred EecCCCCcc-cccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGSQKE-YVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~~k~-yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+|+++.... +..+.+.+ .+. .+.++..+|+||| ++|++.+.+.|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~vyicGp-~~m~~~~~~~L~~ 208 (222)
T cd06194 162 VSEGSQGDPRVRAGRIAA---HLP-PLTRDDVVYLCGA-PSMVNAVRRRAFL 208 (222)
T ss_pred EccCCCCCcccccchhhh---hhc-cccCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 888654321 11111211 111 1235689999999 8999999988865
No 49
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.90 E-value=1.3e-22 Score=209.48 Aligned_cols=166 Identities=24% Similarity=0.429 Sum_probs=133.1
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEE
Q 005496 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (694)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piIm 548 (694)
.+|+|||+|+|....+.++|+|+.+. .|.+|.||++ +++| +.+.|.+|.|.|.++.+..+++||
T Consensus 63 ~~r~ysi~s~~~~~~~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i~gP~G~f~l~~~~~~~~v~ 127 (243)
T cd06216 63 HWRSYSLSSSPTQEDGTITLTVKAQP---------DGLVSNWLVNHLAPG------DVVELSQPQGDFVLPDPLPPRLLL 127 (243)
T ss_pred EEEEEeccCCCcCCCCeEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEECCceeeecCCCCCCCEEE
Confidence 46899999998512578999998642 4889999986 8898 899999999999998765689999
Q ss_pred EecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhH
Q 005496 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMM 628 (694)
Q Consensus 549 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~ 628 (694)
||+||||||+++++++... .+ ...+++||||+|+.+ |.+|.+||+++.+....++++..+|++ ..++++...+
T Consensus 128 iagG~Giap~~s~l~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~-~~~g~~~~~~- 200 (243)
T cd06216 128 IAAGSGITPVMSMLRTLLA---RG-PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHLLYTRE-ELDGRLSAAH- 200 (243)
T ss_pred EecCccHhHHHHHHHHHHh---cC-CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEEEEcCC-ccCCCCCHHH-
Confidence 9999999999999998765 22 457899999999998 999999999998777777888888886 2334443221
Q ss_pred HhHHHHHhccc--CCcEEEEeCCccchHHHHHHHHHH
Q 005496 629 DKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 629 ~~~~~l~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+.+++. .++.+|+||| ++|++.+.+.|.+
T Consensus 201 -----l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~ 231 (243)
T cd06216 201 -----LDAVVPDLADRQVYACGP-PGFLDAAEELLEA 231 (243)
T ss_pred -----HHHhccCcccCeEEEECC-HHHHHHHHHHHHH
Confidence 222222 3579999999 8999999988865
No 50
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.90 E-value=2.8e-23 Score=212.19 Aligned_cols=178 Identities=23% Similarity=0.342 Sum_probs=142.2
Q ss_pred CChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeC
Q 005496 456 PPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (694)
Q Consensus 456 ~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~ 533 (694)
..+|||+.+..|.. ..|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +.|.|.+|.
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP~ 91 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKVP---------GGAFSGWLFGADRTG------ERLTVRGPF 91 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCcchHHHHhcCCCC------CEEEEeCCC
Confidence 35789988874554 4899999999864 578999988542 4899999965 8998 899999999
Q ss_pred CCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHc-CCeeEEEEE
Q 005496 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISELILA 612 (694)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~-g~~~~l~~a 612 (694)
|.|.++. ..+++||||+|||||||++++++... ++ ...+++||||+|+++ |.+|.+||+++++. ..+++++.+
T Consensus 92 G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 165 (227)
T cd06213 92 GDFWLRP-GDAPILCIAGGSGLAPILAILEQARA---AG-TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPV 165 (227)
T ss_pred cceEeCC-CCCcEEEEecccchhHHHHHHHHHHh---cC-CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEE
Confidence 9998864 35799999999999999999999765 22 456799999999998 99999999999865 566788888
Q ss_pred EecCCC------CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~------~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+||+.. .++++++.+.+ .+..+..+|+||| ++|++.+.+.|.+
T Consensus 166 ~s~~~~~~~~~g~~g~v~~~l~~-------~~~~~~~v~~CGp-~~~~~~~~~~l~~ 214 (227)
T cd06213 166 LSEEPADSSWKGARGLVTEHIAE-------VLLAATEAYLCGP-PAMIDAAIAVLRA 214 (227)
T ss_pred ecCCCCCCCccCCcccHHHHHHh-------hccCCCEEEEECC-HHHHHHHHHHHHH
Confidence 998642 23456554432 2235689999999 8999999988765
No 51
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.89 E-value=3e-23 Score=215.59 Aligned_cols=181 Identities=23% Similarity=0.307 Sum_probs=144.3
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCC
Q 005496 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g 534 (694)
+..+||++.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||+++++| +.+.|.+|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G------~~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPG------DTVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCC------CEEEEECCcC
Confidence 4578999988766656799999999964 4789998873 38899999999998 8999999999
Q ss_pred C-cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 535 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 535 ~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
. |.++....+|+||||+||||||+++++++.++. +....+++|||+.|+.+ |++|++||+++.+. .++++..++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~---~~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDN---REDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhc---cccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 6 666543568999999999999999999998762 22357899999999999 99999999999987 566788889
Q ss_pred ecCCC----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 614 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 614 SR~~~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
||+.+ ..+++++.+.+.. ....+..||+||| +.|++.+.+.|.+.
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred CCCCCCccCCccccchhHHhcC-----CCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 87653 3456665443321 0114678999999 89999999888653
No 52
>PRK12359 flavodoxin FldB; Provisional
Probab=99.89 E-value=1.8e-22 Score=196.26 Aligned_cols=144 Identities=22% Similarity=0.351 Sum_probs=123.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
|++.|+|+|+|||||.+|++|++++. ...+++.++++++.++ +..++.+||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg----~~~v~v~~i~~~~~~~------l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG----EELVDLHNLKDDPPKL------MEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC----CCeEEEEEcccCChhH------HccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 58999999999999999999999873 2347889999988877 8899999999999999999999999999
Q ss_pred HHhccCCCCCCCCCceEEEEEecCc-ch-hHHHHHHHHHHHHHHHcCCeEeecc---------------------eee-c
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL---------------------GLG-D 219 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~i~~~---------------------g~g-D 219 (694)
.|.+.. |+|+++|+||+||+ .| ++||.+++.++++|++.||+.+... |+. |
T Consensus 71 ~l~~~d-----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDLN-----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhCC-----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 987754 89999999999998 58 9999999999999999999877643 222 3
Q ss_pred CCC---CchHHHHHHHHHHHHHHHhh
Q 005496 220 DDQ---CIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 220 ~~~---~~e~~~~~W~~~l~~~L~~~ 242 (694)
+++ -.++++++|.++|-+++..+
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 332 26899999999998877543
No 53
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.89 E-value=5.2e-23 Score=212.79 Aligned_cols=183 Identities=20% Similarity=0.310 Sum_probs=142.6
Q ss_pred CChHHHHHHhcC--C---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEE
Q 005496 456 PPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (694)
Q Consensus 456 ~p~~~ll~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v 529 (694)
..+|||+.+.++ . ...|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.+.|
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i 99 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREP---------GGLVSNYLHDNVKVG------DVLEV 99 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEE
Confidence 467888877643 2 45799999999853 47888877432 4999999998 9999 89999
Q ss_pred EeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEE
Q 005496 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (694)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l 609 (694)
.+|.|.|.++.+..+++||||+|||||||++++++.... ....+++||||+|+++ +.+|++||+++.+...++++
T Consensus 100 ~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~----~~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 174 (247)
T cd06184 100 SAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE----GPGRPVTFIHAARNSA-VHAFRDELEELAARLPNLKL 174 (247)
T ss_pred EcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc----CCCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEE
Confidence 999999999865568999999999999999999998752 2467899999999998 89999999999987677889
Q ss_pred EEEEecCCCCc---ccc-cchhHHhHHHHHh-cccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 610 ILAFSREGSQK---EYV-QHKMMDKAAQLWS-LLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 610 ~~afSR~~~~k---~yV-q~~l~~~~~~l~~-ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+.++||+.... .+. +.++. .+.+.+ +..++..||+||| +.|++++.+.|.+
T Consensus 175 ~~~~s~~~~~~~~~~~~~~g~~~--~~~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~ 230 (247)
T cd06184 175 HVFYSEPEAGDREEDYDHAGRID--LALLRELLLPADADFYLCGP-VPFMQAVREGLKA 230 (247)
T ss_pred EEEECCCCcccccccccccCccC--HHHHhhccCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 99999875431 111 12221 112222 2235789999999 8999999988865
No 54
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.89 E-value=7.6e-23 Score=209.15 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=142.8
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEE
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 530 (694)
...+|||+.+.+|. ...|+|||+|.|.. .+.++|+|++.. .|.+|.||+ ++++| +.+.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~~~~G------~~v~i~ 90 (231)
T cd06215 27 AYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDNLKVG------DELWAS 90 (231)
T ss_pred CcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEE
Confidence 34688988876442 24699999999854 467999988542 489999997 59998 899999
Q ss_pred eeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEE
Q 005496 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (694)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~ 610 (694)
+|.|.|.++.....++||||+|||||||++++++.... + ...+++||||+|+++ |++|.++|+++.+....++++
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 165 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDT---R-PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLH 165 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhc---C-CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEE
Confidence 99999998755568999999999999999999987652 2 356899999999998 999999999999876667888
Q ss_pred EEEecCCCC-cccccchhHHhHHHHHhccc--CCcEEEEeCCccchHHHHHHHHHH
Q 005496 611 LAFSREGSQ-KEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 611 ~afSR~~~~-k~yVq~~l~~~~~~l~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
.+.++++.. ..+.++++.+ +.+.+++. .+..+|+||| ++|++.+.+.|.+
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~ 218 (231)
T cd06215 166 LILEQPAPGAWGGYRGRLNA--ELLALLVPDLKERTVFVCGP-AGFMKAVKSLLAE 218 (231)
T ss_pred EEEccCCCCcccccCCcCCH--HHHHHhcCCccCCeEEEECC-HHHHHHHHHHHHH
Confidence 888886542 2233344432 12222222 2468999999 8999999988854
No 55
>PRK05713 hypothetical protein; Provisional
Probab=99.89 E-value=4.8e-23 Score=220.53 Aligned_cols=175 Identities=18% Similarity=0.228 Sum_probs=138.0
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCC-
Q 005496 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS- 534 (694)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g- 534 (694)
..+|||+.+..+....|+|||+|.|.. .+.++|+|+.+. .|..|+||.++++| +.|.+..+.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~~---------~G~~s~~l~~l~~G------d~v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCSR---------PGAFCDAARQLQVG------DLLRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEcC---------CCccchhhhcCCCC------CEEEEccCCCC
Confidence 468999987646656899999999854 478999997542 59999999999999 8999999987
Q ss_pred CcccCCC-CCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 535 NFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 535 ~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
.|.++.+ ..+|+||||+|||||||+|++++.+. .+ ...+++|+||+|+.+ |++|.+||++|.+...+++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALR---QG-HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 6666644 46899999999999999999998765 22 347899999999999 999999999999876667777766
Q ss_pred ecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 614 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 614 SR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
++ ++++.+.+ +. ....+..+|+||| ++|++.+.+.|.+
T Consensus 258 ~~------~~~~~l~~----~~-~~~~~~~vyiCGp-~~mv~~~~~~L~~ 295 (312)
T PRK05713 258 AA------QLPAALAE----LR-LVSRQTMALLCGS-PASVERFARRLYL 295 (312)
T ss_pred Cc------chhhhhhh----cc-CCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 54 23332221 10 1224578999999 9999999998864
No 56
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.88 E-value=1.7e-22 Score=207.07 Aligned_cols=185 Identities=21% Similarity=0.287 Sum_probs=141.8
Q ss_pred CChHHHHHHhcC--CC--CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEE
Q 005496 456 PPIGVFFAAVAP--HL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 530 (694)
Q Consensus 456 ~p~~~ll~~~~p--~l--~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~ 530 (694)
..+|||+.+.+| .. ..|+|||+|.|.. .+.++|+|+.+. .|.+|+||.+ +++| +.+.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~---------~G~~s~~l~~~l~~G------d~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVP---------GGEVSPYLHDEVKVG------DLLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 467999988754 22 2499999999865 468999998542 4899999986 7898 899999
Q ss_pred eeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEE
Q 005496 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (694)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~ 610 (694)
+|.|.|.++....++++|||+||||||+++++++.... + ...+++|+||+|+.+ |.+|++||.++.+....++++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~---~-~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDL---G-WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhc---C-CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 99999987654467999999999999999999997752 2 457899999999998 899999999999876667888
Q ss_pred EEEecCCC-CcccccchhHHhHHHHHhcc--cCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 611 LAFSREGS-QKEYVQHKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 611 ~afSR~~~-~k~yVq~~l~~~~~~l~~ll--~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
.++||+.. .....++++.+.. +.+++ ..+..+|+||| ++|+++|.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~--l~~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADL--IAELVPPLAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHH--HHhhCCCccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 89998632 1112223332211 11111 24679999999 89999999888653
No 57
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.88 E-value=2.2e-22 Score=207.12 Aligned_cols=186 Identities=23% Similarity=0.347 Sum_probs=142.6
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEE
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 530 (694)
...+|||+.+..|. ..+|+|||+|.|.. +.++|+|+++. .|.+|.||. ++++| +.+.|.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVP---------GGRFSNWANDELKAG------DTLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcC---------CCccchhHHhccCCC------CEEEEe
Confidence 45789999988442 36799999998854 37898888552 599999997 68998 899999
Q ss_pred eeCCCcccCCC-CCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCC-eeE
Q 005496 531 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISE 608 (694)
Q Consensus 531 ~~~g~F~lp~~-~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~-~~~ 608 (694)
+|.|.|.++.+ ...++||||+|||||||+++++++... + ...+++||||+|+.. |++|.+||+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAR---E-PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhc---C-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 99999988865 468999999999999999999997752 1 357899999999998 9999999999987643 667
Q ss_pred EEEEEecCCCCcccccchhHHh-HHHHH-hcc--cCCcEEEEeCCccchHHHHHHHHHH
Q 005496 609 LILAFSREGSQKEYVQHKMMDK-AAQLW-SLL--SKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 609 l~~afSR~~~~k~yVq~~l~~~-~~~l~-~ll--~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+..++|+++....+...++.+. ..... +++ .++..||+||| +.|++.|.+.|.+
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~ 227 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLE 227 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHH
Confidence 7788888654322233333321 11121 121 24579999999 8899999988765
No 58
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.88 E-value=2.4e-22 Score=218.73 Aligned_cols=187 Identities=20% Similarity=0.343 Sum_probs=142.9
Q ss_pred CCChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEE
Q 005496 455 TPPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (694)
Q Consensus 455 ~~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 530 (694)
...+|||+.+.+| ....|+|||+|+|. .+.++|+|+.+. .|.+|+||+ ++++| +.+.|.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~G------d~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPG------DTLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 3468999988643 12469999999984 478999998653 489999997 68999 899999
Q ss_pred eeCCCcccCCCC--CCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCC-ee
Q 005496 531 IRPSNFKLPANP--SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-IS 607 (694)
Q Consensus 531 ~~~g~F~lp~~~--~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~-~~ 607 (694)
+|.|+|.++.+. .+++||||+|||||||++++++.+.. + ...+++||||+|+++ |.+|.+||+++.+... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E-PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 999999887542 37999999999999999999987652 2 347899999999998 9999999999987644 47
Q ss_pred EEEEEEecCCCCcccccchhHH-hHHH-HHhcc--cCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 608 ELILAFSREGSQKEYVQHKMMD-KAAQ-LWSLL--SKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 608 ~l~~afSR~~~~k~yVq~~l~~-~~~~-l~~ll--~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+++.++||+.....+.+.++.. ...+ +.++. .....+|+||| ++|++.+.+.|.+.
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGL 229 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8888999875433333444321 1111 22222 23468999999 89999999988753
No 59
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.88 E-value=2.5e-22 Score=209.83 Aligned_cols=174 Identities=19% Similarity=0.234 Sum_probs=136.3
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCC
Q 005496 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (694)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~ 535 (694)
..+|||+.+.+|...+|+|||++.+ .+.++|+|+. .|.+|+||.++++| +.|.|.+|.|+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEG------DKLFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCC------CEEEEECCCCC
Confidence 4689998887676667999999875 4689998873 38999999999999 89999999996
Q ss_pred -cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEe
Q 005496 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (694)
Q Consensus 536 -F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afS 614 (694)
|.++.+..+|+||||+|||||||++++++.+. .+....+++||||+|+.+ |.+|++||++|.+.. .++.+++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~---~~~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYE---NPQEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 88876566899999999999999999998764 222346899999999998 999999999998743 2455566
Q ss_pred cCCC----CcccccchhHHhHHHHHhccc--CCcEEEEeCCccchHHHHHHHHHH
Q 005496 615 REGS----QKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 615 R~~~----~k~yVq~~l~~~~~~l~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
++.. ..+++++.+.+. .+. .+..+|+||| +.|++++.+.|.+
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp-~~mv~~~~~~L~~ 213 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGP-PIMMKFTVLEFLK 213 (263)
T ss_pred CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECC-HHHHHHHHHHHHH
Confidence 6433 234555433221 122 4678999999 9999999988864
No 60
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.88 E-value=3.1e-22 Score=207.14 Aligned_cols=171 Identities=19% Similarity=0.300 Sum_probs=134.4
Q ss_pred CChHHHHHHhcCC----CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEe
Q 005496 456 PPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 456 ~p~~~ll~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (694)
..+|||+.+..|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++++| +.|.|.+
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~G------d~v~i~g 86 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAG------DELDVLG 86 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCC------CEEEEEe
Confidence 4678888887453 35799999998853 46888888742 7789999999999 8999999
Q ss_pred eCCC-cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEE
Q 005496 532 RPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (694)
Q Consensus 532 ~~g~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~ 610 (694)
|.|. |.++. ...++||||+|||||||++++++... ...+++||||+|+.+ |.+|++||+++.. +++
T Consensus 87 P~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~ 153 (246)
T cd06218 87 PLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAE------RGIKVTVLLGFRSAD-DLFLVEEFEALGA-----EVY 153 (246)
T ss_pred cCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHh------cCCceEEEEEccchh-hhhhHHHHHhhCC-----cEE
Confidence 9994 77774 56899999999999999999998764 236899999999999 9999999999853 122
Q ss_pred EEEecCC--CCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 611 LAFSREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 611 ~afSR~~--~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+ +++++ ..++|+++.+.+..... .+..||+||| +.|++++++.|.+.
T Consensus 154 ~-~~~~~~~~~~g~v~~~l~~~~~~~-----~~~~vyiCGp-~~mv~~~~~~L~~~ 202 (246)
T cd06218 154 V-ATDDGSAGTKGFVTDLLKELLAEA-----RPDVVYACGP-EPMLKAVAELAAER 202 (246)
T ss_pred E-EcCCCCCCcceehHHHHHHHhhcc-----CCCEEEEECC-HHHHHHHHHHHHhc
Confidence 2 23332 24568887666544221 4689999999 89999999988763
No 61
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.87 E-value=4.9e-22 Score=201.38 Aligned_cols=177 Identities=21% Similarity=0.287 Sum_probs=137.1
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEE
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~ 530 (694)
...+|||+.+..|. ...|+|||+|.|.. .+.++|+|+. .|..|++|. ++++| +.+.|.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G------~~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPG------TRVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCC------CEEEEE
Confidence 34689998887553 57899999999854 4689999873 378999999 79998 899999
Q ss_pred eeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEE
Q 005496 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (694)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~ 610 (694)
+|.|.|.++.. .+++||||+||||||+++++++.... + ..++++|+||+|+.+ |.+|.+||+++.+.. .++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAAR---G-DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhc---C-CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 99999998765 68999999999999999999987752 2 357899999999999 999999999998876 55677
Q ss_pred EEEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 611 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 611 ~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+..++++.. ......+ .... ....+..+|+||| +.|++++++.|.+
T Consensus 157 ~~~~~~~~~-~~~~~~~----~~~~-~~~~~~~vyicGp-~~m~~~v~~~l~~ 202 (216)
T cd06198 157 VIDSPSDGR-LTLEQLV----RALV-PDLADADVWFCGP-PGMADALEKGLRA 202 (216)
T ss_pred EEeCCCCcc-cchhhhh----hhcC-CCcCCCeEEEECc-HHHHHHHHHHHHH
Confidence 666654321 1111111 0010 0124578999999 8999999988865
No 62
>PRK09271 flavodoxin; Provisional
Probab=99.87 E-value=1.2e-21 Score=189.63 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=117.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
|+++|+|+|+|||||++|+.|++.+.+. |+.+++.++++.+..+ ...++.+++.++|++||||.|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEA--GHEVDWVETDVQTLAE--YPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhC--CCeeEEEecccccccc--cccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 5899999999999999999999999988 8888888887766443 22236678999999999999999999999999
Q ss_pred HHhccCCCCCCCCCceEEEEEecCcch--hHHHHHHHHHHHHHHHcCCeEeecceeecCCC---CchHHHHHHHHHHHHH
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPE 238 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~---~~e~~~~~W~~~l~~~ 238 (694)
+|.... .++++++|||+||+.| ++||.+++.++++|+... +....+... ...+.+.+|.+++++.
T Consensus 77 ~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 998743 4688999999999999 899999999999998642 434444322 2347889999998888
Q ss_pred H
Q 005496 239 L 239 (694)
Q Consensus 239 L 239 (694)
|
T Consensus 147 ~ 147 (160)
T PRK09271 147 C 147 (160)
T ss_pred h
Confidence 7
No 63
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.87 E-value=6.6e-22 Score=202.39 Aligned_cols=185 Identities=18% Similarity=0.244 Sum_probs=143.0
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEe
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (694)
...+||++.+..|. ...|+|||+|++.. .+.++|+|+.+. .|.+|+||+++++| +.+.|.+
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G------~~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPG------DTVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCC------CEEEEEC
Confidence 35789998887554 46799999999854 467999988542 49999999999998 8999999
Q ss_pred eCCCcccCCCCC-CCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHc-CCeeEE
Q 005496 532 RPSNFKLPANPS-VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISEL 609 (694)
Q Consensus 532 ~~g~F~lp~~~~-~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~-g~~~~l 609 (694)
|.|.|.+..+.. .++||||+||||||+++++++.... +....+++|+||+|+.+ |.+|.+||+++.+. ...+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKD---PEDKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhC---cCcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 999998876554 7999999999999999999998652 11357899999999998 99999999999886 355678
Q ss_pred EEEEecCCCC----cccccchhHHhHHHHHhc-ccCCcEEEEeCCccchHH-HHHHHHHH
Q 005496 610 ILAFSREGSQ----KEYVQHKMMDKAAQLWSL-LSKEGYLYVCGDAKGMAR-DVHRTLHT 663 (694)
Q Consensus 610 ~~afSR~~~~----k~yVq~~l~~~~~~l~~l-l~~~~~iYvCG~a~~M~~-~V~~~L~~ 663 (694)
+.++|+++.. .+++++.+.+. .... ...+..+|+||| ++|++ .+.+.|.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIKE---HLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHHH---hCCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 8888876432 34554332211 1110 124578999999 89999 99988754
No 64
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.87 E-value=3.8e-22 Score=213.55 Aligned_cols=184 Identities=12% Similarity=0.130 Sum_probs=135.4
Q ss_pred CChHHHHHHhcC-C-----CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEE
Q 005496 456 PPIGVFFAAVAP-H-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 529 (694)
Q Consensus 456 ~p~~~ll~~~~p-~-----l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v 529 (694)
..+||++.+..+ . ...|+|||+|+|.. .+.++|+|+.+. .|..|+||+++++| +.|.|
T Consensus 82 f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~---------~G~~S~~L~~lk~G------d~v~v 145 (325)
T PTZ00274 82 LKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKK---------DGLMTNHLFGMHVG------DKLLF 145 (325)
T ss_pred CCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcC---------CCcccHHHhcCCCC------CEEEE
Confidence 357787775423 1 23699999999965 578999998653 59999999999999 89999
Q ss_pred EeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhc--CCCCCCEEEEEeecCCCcccccHHHHHhhHHcCC-e
Q 005496 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-I 606 (694)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~--~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~-~ 606 (694)
.+|.+.|.+..+..+|+||||+|||||||++++++.+..... +....+++|+||+|+.+ |.+|++||+++++... .
T Consensus 146 ~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~~ 224 (325)
T PTZ00274 146 RSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSNR 224 (325)
T ss_pred eCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCCc
Confidence 998766665544457999999999999999999988753211 11235899999999998 9999999999988644 5
Q ss_pred eEEEEEEecCCC------CcccccchhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHH
Q 005496 607 SELILAFSREGS------QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRT 660 (694)
Q Consensus 607 ~~l~~afSR~~~------~k~yVq~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~ 660 (694)
++++.++|++.+ ..++|.+.+.. ++..... ....+|+||| ++|++.|...
T Consensus 225 f~v~~~ls~~~~~~~w~g~~G~V~~~ll~---~~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 225 FKVYYTIDQAVEPDKWNHFLGYVTKEMVR---RTMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred EEEEEEeCCCCcccCCCCCCCccCHHHHH---HhcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 788888887532 22444433211 1111111 2257999999 9999999654
No 65
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.87 E-value=6e-22 Score=206.75 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=134.9
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCC
Q 005496 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (694)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~ 535 (694)
..+|||+.+.+|...+|+|||+|.+ .+.++|+|+. .|.+|++|.++++| +.|.|.+|.|+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~G------d~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEG------DNLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCC------CEEEEecCCCC
Confidence 4689999887677778999999853 4789999873 38999999999999 89999999996
Q ss_pred -cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEe
Q 005496 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (694)
Q Consensus 536 -F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afS 614 (694)
|.++.+..+|++|||+||||||+++++++.+. ++....+++||||+|+.+ |++|++||+++.+.. ++...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~---~~~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVK---NPKEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 88776556899999999999999999998764 222346899999999999 999999999998753 2344455
Q ss_pred cCCC----CcccccchhHHhHHHHHhccc--CCcEEEEeCCccchHHHHHHHHHH
Q 005496 615 REGS----QKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 615 R~~~----~k~yVq~~l~~~~~~l~~ll~--~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
++.+ ..+++.+.+.+. .+. .+..+|+||| +.|++++.+.|.+
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~------~~~~~~~~~v~lCGp-~~mv~~~~~~L~~ 211 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPEL------TLKDIEEVQAIVVGP-PIMMKFTVQELLK 211 (261)
T ss_pred CCCCCCcCCeeccCHhHHhc------cCCCccceEEEEECC-HHHHHHHHHHHHH
Confidence 4322 234555433221 111 3578999999 9999999988765
No 66
>PRK06756 flavodoxin; Provisional
Probab=99.87 E-value=3.3e-21 Score=183.98 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=117.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC-cCchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d-~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
+++++|+|+|+|||||++|+.|++++.+. |+.++++++.+.+ ..+ +.+++.+||++||||.|.+|+++..|
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~--g~~v~~~~~~~~~~~~~------~~~~d~vi~gspt~~~g~~p~~~~~f 72 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRET--ENEIEVIDIMDSPEASI------LEQYDGIILGAYTWGDGDLPDDFLDF 72 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhc--CCeEEEeehhccCCHHH------HhcCCeEEEEeCCCCCCCCcHHHHHH
Confidence 46899999999999999999999999877 8889999887653 233 77899999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHH
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~ 232 (694)
++.+.... ++++++++||+|++.|.|||.+.+.+.+.|+++|++.+.+....... ..+++++.|.
T Consensus 73 l~~l~~~~-----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~ 137 (148)
T PRK06756 73 YDAMDSID-----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCL 137 (148)
T ss_pred HHHHhcCC-----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHH
Confidence 99987643 88999999999999999999999999999999999999887666433 3466665554
No 67
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.86 E-value=1.5e-21 Score=207.59 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=137.9
Q ss_pred CChHHHHHHhcCC-------CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEE
Q 005496 456 PPIGVFFAAVAPH-------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP 528 (694)
Q Consensus 456 ~p~~~ll~~~~p~-------l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~ 528 (694)
..+|||+.+.++. ...|+||++|+|.. .+.++|+|+.+...........|.+|+||.++++| +.|.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLG------DKIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCC------CEEE
Confidence 4678988876442 24699999999854 57899999876211100011259999999999999 8999
Q ss_pred EEeeCCCcccCCC---------------CCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCccccc
Q 005496 529 IFIRPSNFKLPAN---------------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 593 (694)
Q Consensus 529 v~~~~g~F~lp~~---------------~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 593 (694)
|.+|.|.|.++.+ ...|+||||+|||||||++++++.+. +.....++.|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~---~~~~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKK---NKEDRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHh---CCCCCceEEEEEecCCHH-HhhH
Confidence 9999999866432 12489999999999999999998765 222345899999999999 9999
Q ss_pred HHHHHhhHHcCCeeEEEEEEecCCC-----CcccccchhHHhHHHHHhccc------CCcEEEEeCCccchHH-HHHHHH
Q 005496 594 EDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLS------KEGYLYVCGDAKGMAR-DVHRTL 661 (694)
Q Consensus 594 ~del~~~~~~g~~~~l~~afSR~~~-----~k~yVq~~l~~~~~~l~~ll~------~~~~iYvCG~a~~M~~-~V~~~L 661 (694)
.+||+++. ....++++.++|++.. ..++|...+.+.. ....+ ++..||+||| ++|++ .+.+.|
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~---~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L 287 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH---LPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNL 287 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh---cCCccccccccCCeEEEEECC-HHHHHHHHHHHH
Confidence 99999955 4455678888888532 2356655433221 11111 3468999999 89998 466666
Q ss_pred HH
Q 005496 662 HT 663 (694)
Q Consensus 662 ~~ 663 (694)
.+
T Consensus 288 ~~ 289 (300)
T PTZ00319 288 EK 289 (300)
T ss_pred HH
Confidence 54
No 68
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.86 E-value=2.7e-21 Score=201.23 Aligned_cols=178 Identities=20% Similarity=0.293 Sum_probs=136.3
Q ss_pred CChHHHHHHhcCCC---CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhh-hcCCCCCCCCccEEEEEe
Q 005496 456 PPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 456 ~p~~~ll~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~v~~ 531 (694)
+.+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++.. .|..|+||+ ++++| +.|.|..
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~---------~G~~S~~Lh~~lk~G------d~l~v~~ 98 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRED---------GGGGSNWLHDHLKVG------DTLEVSA 98 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeC---------CCcccHHHHhcCCCC------CEEEEec
Confidence 46889888765643 6899999999975 468888888652 399999999 79999 8999999
Q ss_pred eCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCee-EEE
Q 005496 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS-ELI 610 (694)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~-~l~ 610 (694)
|.|.|.++..+..|++|||+|||||||+||++..... + . .++.|+|++|+.+ |..|+|| +.+.+..... .+.
T Consensus 99 P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~---~-~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~ 171 (266)
T COG1018 99 PAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDR---G-P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLG 171 (266)
T ss_pred CCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHh---C-C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEE
Confidence 9999999986777999999999999999999997762 2 4 8899999999999 9999999 8887765443 333
Q ss_pred EEEecCCCCcccccchhHHhHHHHHhcccCC-cEEEEeCCccchHHHHHHHHHHH
Q 005496 611 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 611 ~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~-~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
..+++.. ..+|.. ...+...+.+. ..+|+||| .+|++.|...|.++
T Consensus 172 ~~~~~~~-~~g~~~------~~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~ 218 (266)
T COG1018 172 LYTERGK-LQGRID------VSRLLSAAPDGGREVYLCGP-GPFMQAVRLALEAL 218 (266)
T ss_pred EEEecCC-cccccc------HHHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 3333211 122221 11122223333 79999999 78999999988665
No 69
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.86 E-value=3e-21 Score=194.69 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=132.3
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeC
Q 005496 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~ 533 (694)
...+|||+.+..|....|+|||+|.|.. .+.++|+|+.+.. .+.+|.||++ +++| +.+.|.+|.
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~~--------g~~~s~~l~~~~~~G------d~v~i~gP~ 89 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREPA--------SRGGSRYMHELLRVG------DELEVSAPR 89 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEeccC--------CCchHHHHHhcCCCC------CEEEEcCCc
Confidence 4578999998866667899999999864 4789999885420 1347999976 7888 899999999
Q ss_pred CCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
|.|.++.+ .+|+||||+||||||+++++++... ...+++||||+|+.+ |.+|.+||+++. .. .+.+.+
T Consensus 90 g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~------~~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~ 157 (211)
T cd06185 90 NLFPLDEA-ARRHLLIAGGIGITPILSMARALAA------RGADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHF 157 (211)
T ss_pred cCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHh------CCCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEE
Confidence 99988643 5799999999999999999998754 236899999999998 899999999987 22 244456
Q ss_pred ecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 614 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 614 SR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+++. ...++++.+. -+.++..+|+||| +.|++++.+.|.+
T Consensus 158 ~~~~-~~~~~~~~~~--------~~~~~~~vyicGp-~~m~~~~~~~l~~ 197 (211)
T cd06185 158 DDEG-GRLDLAALLA--------APPAGTHVYVCGP-EGMMDAVRAAAAA 197 (211)
T ss_pred CCCC-CccCHHHHhc--------cCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 6543 2223332221 1234679999999 8999999988865
No 70
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=215.50 Aligned_cols=186 Identities=18% Similarity=0.157 Sum_probs=153.0
Q ss_pred hHHHHHHhhhcccCCCCchhhHHHHHHHHHHHHhHhhheeeccCCCCCcccCCCCCCCCCCCCchhhHHHHhc-----CC
Q 005496 9 LVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----GK 83 (694)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 83 (694)
..++|.++|+++..+ ++++.+|||+ ||. +||++.. ++++.|.+ .+
T Consensus 198 ~~~~v~~~l~~l~~~--~l~~~~i~p~-HG~-------i~~~~~~--------------------~~~~~Y~~~~~~~~~ 247 (394)
T PRK11921 198 FSPLVIKKIEEILSL--NLPVDMICPS-HGV-------IWRDNPL--------------------QIVEKYLEWAANYQE 247 (394)
T ss_pred hHHHHHHHHHHHHhc--CCCCCEEEcC-Ccc-------EEeCCHH--------------------HHHHHHHHHhhcCCc
Confidence 356789999999876 7789999999 999 8998754 45555543 57
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHH--hhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIK--ARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~--~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
++|+|+|+|+|||||++|+.|++.+. .. |++++++++.+.+.++ ++.++.+++.+||++||||.|.+| .+..|
T Consensus 248 ~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~--g~~v~~~~~~~~~~~~--i~~~~~~~d~ii~GspT~~~~~~~-~~~~~ 322 (394)
T PRK11921 248 NQVTILYDTMWNSTRRMAEAIAEGIKKANK--DVTVKLYNSAKSDKND--IITEVFKSKAILVGSSTINRGILS-STAAI 322 (394)
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHhhcCC--CCeEEEEECCCCCHHH--HHHHHHhCCEEEEECCCcCccccH-HHHHH
Confidence 88999999999999999999999997 55 7889999999888776 666677899999999999889885 48889
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHHHHHHHHH
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W~~~l~~~ 238 (694)
++++.... ++||++++|| +|+|+|.+.+.+.++|+++|++.+.+........ ...+.+.+|.+.+...
T Consensus 323 l~~l~~~~-----~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 323 LEEIKGLG-----FKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHhhccC-----cCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998765 8899999999 6999999999999999999999998765554432 2334556777666543
No 71
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.85 E-value=1.5e-20 Score=177.09 Aligned_cols=121 Identities=25% Similarity=0.373 Sum_probs=109.8
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCC-hhHHHHHHH
Q 005496 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARFYKW 164 (694)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p-~na~~F~~~ 164 (694)
|+|+|+|+||||+++|+.|++.+.+. |+.++++++.+.+..+ +.+++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~--g~~v~~~~~~~~~~~~------l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEA--GAEVDLLEVADADAED------LLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhc--CCeEEEEEcccCCHHH------HhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 57999999999999999999999887 8889999999887766 77899999999999999999 999999999
Q ss_pred HhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecC
Q 005496 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (694)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~ 220 (694)
|.... ++|+++++||+|++.|+ ||.+++.+++.|+++|++++.+....+.
T Consensus 73 l~~~~-----~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~ 122 (140)
T TIGR01753 73 LEDID-----LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDG 122 (140)
T ss_pred hhhCC-----CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeec
Confidence 87643 78999999999999998 9999999999999999999988655543
No 72
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.85 E-value=7e-21 Score=197.50 Aligned_cols=177 Identities=21% Similarity=0.326 Sum_probs=145.8
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCC
Q 005496 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g 534 (694)
...+|||+.+.+|....|+|||+|.+.. .+.++|.+++.. .|.+|.++..+++| +.+.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~~---------~G~~T~~i~~~k~g------d~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVYE---------VGKVTKYIFGLKEG------DKIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEEe---------CChHHHHHhhccCC------CEEEEEcCCC
Confidence 3689999999978899999999999965 577777777654 59999999999998 7899999999
Q ss_pred CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEe
Q 005496 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (694)
Q Consensus 535 ~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afS 614 (694)
++.+..+..+|+++||+|||+||+++++++... ++ ...+++++||.|++. |.++.+||+++... +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~---~~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKE---KG-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHh---cC-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 887776677889999999999999999998775 44 568999999999999 99999999999876 3555554
Q ss_pred cCCC--Ccccc-cchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 615 REGS--QKEYV-QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 615 R~~~--~k~yV-q~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
++. .+++| ++.+.+... .+...+|+||| +.|++.+.+.+.+-
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~ 214 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEY 214 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhc
Confidence 332 57788 655544321 14689999999 99999999887753
No 73
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.84 E-value=6.6e-21 Score=193.95 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=120.3
Q ss_pred CChHHHHHHhcCCC-------------------CCcccccCCCCCCC--CCeEEEEEEEEEecCCCCCcccCccchhhhh
Q 005496 456 PPIGVFFAAVAPHL-------------------QPRYYSISSSPRFA--PDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 514 (694)
Q Consensus 456 ~p~~~ll~~~~p~l-------------------~pR~YSIsSsp~~~--~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~ 514 (694)
..+||++.+.+|.. ..|+|||+|+|... .+.++|+|+. .|..|+||.+
T Consensus 26 ~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~ 94 (220)
T cd06197 26 WTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQ 94 (220)
T ss_pred cCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHH
Confidence 35688877754531 34999999999654 2688888873 3899999998
Q ss_pred cCC-----CCCCCCccEEEEEeeCCCcccCC---CCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecC
Q 005496 515 AIP-----LEGNGDCSWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRN 586 (694)
Q Consensus 515 l~~-----g~~~~~~~~v~v~~~~g~F~lp~---~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~ 586 (694)
... | +.+.|.+|.|.|.++. +..+++||||+|||||||++++++.+.. +....+++|+||+|+
T Consensus 95 ~~~~~~~~G------~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~---~~~~~~v~l~~~~r~ 165 (220)
T cd06197 95 VARRLREQG------LEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSS---RNTTWDITLLWSLRE 165 (220)
T ss_pred hhhcccCCC------ceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhc---ccCCCcEEEEEEecc
Confidence 644 5 8999999999999875 3457999999999999999999987642 223578999999999
Q ss_pred CCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 587 RRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 587 ~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
.+ |.+|.+||.++.... ..+... +. +.||+||| ++|++.|.+.+.+
T Consensus 166 ~~-~~~~~~el~~~~~~~--~~~~~~-~~--------------------------~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 166 DD-LPLVMDTLVRFPGLP--VSTTLF-IT--------------------------SEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred hh-hHHHHHHHHhccCCc--eEEEEE-Ee--------------------------ccEEEECc-HHHHHHHHHHhhh
Confidence 98 999999998875421 111111 10 16999999 8999999987764
No 74
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.84 E-value=3.3e-20 Score=180.79 Aligned_cols=140 Identities=26% Similarity=0.442 Sum_probs=116.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (694)
+|.|+|+|+|||||++|+.|++.+.. ..++++++++.+..+ +.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~~~------l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASKED------LNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCHhH------HhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 47899999999999999999998853 347888998877666 88899999999999999999999999998
Q ss_pred HhccCCCCCCCCCceEEEEEecCcc-h-hHHHHHHHHHHHHHHHcCCeEeecc------------e---------eecCC
Q 005496 165 FTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL------------G---------LGDDD 221 (694)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~------------g---------~gD~~ 221 (694)
|.... ++++++++||+||+. | +|||.+.+.+++.|+++|++++... . .-|..
T Consensus 71 l~~~~-----l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEELD-----FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcCC-----CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 86643 889999999999984 7 7999999999999999999988765 0 01221
Q ss_pred --C-CchHHHHHHHHHHHHHH
Q 005496 222 --Q-CIEDDFTAWRELVWPEL 239 (694)
Q Consensus 222 --~-~~e~~~~~W~~~l~~~L 239 (694)
+ -.++.+.+|.++|-+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 1 24788889988776553
No 75
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.84 E-value=8.7e-21 Score=196.82 Aligned_cols=166 Identities=21% Similarity=0.295 Sum_probs=131.1
Q ss_pred CCChHHHHHHhcCCC---CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEe
Q 005496 455 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (694)
...+|||+.+..|.. .+|+|||+|+| .+.++|+|+. .|..|+||.++++| +.+.|.+
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G------~~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEG------DELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCC------CEEEEEc
Confidence 347899988864544 68999999998 4789998874 38899999999999 8999999
Q ss_pred eCCC-cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEE
Q 005496 532 RPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (694)
Q Consensus 532 ~~g~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~ 610 (694)
|.|+ |.++. ...|+||||+||||||+++++++... ...+++|+|++|+.+ |++|++||+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKK------KGVEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHH------cCCcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 9995 88864 45799999999999999999998764 235799999999998 9999999998432 22
Q ss_pred EEEecCCC--CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 611 LAFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 611 ~afSR~~~--~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+. ++++. .++||++.+.+.. ....+||+||| +.|++.+.+.|.+
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~ 202 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKE 202 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 22 23322 4568887664431 23468999999 9999999988876
No 76
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.84 E-value=1.4e-20 Score=193.29 Aligned_cols=164 Identities=21% Similarity=0.294 Sum_probs=128.1
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCC
Q 005496 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g 534 (694)
...+|||+.+..|....|+|||+|+| +.++|+|+. .|..|+||+++++| +.+.|.+|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~G------d~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEG------DKLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCC------CEEEEECcCC
Confidence 45789999987566667999999998 678888863 38899999999999 8999999999
Q ss_pred C-cccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 535 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 535 ~-F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
+ |.++ .+|+||||+|||||||++++++... . .+++||||+|+++ |.+|++||++. . ++.+..
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~------~-~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKK------A-ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHh------c-CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 5799999999999999999998764 2 7899999999998 99999999982 1 222222
Q ss_pred ecCC--CCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 614 SREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 614 SR~~--~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
.+. ...+++++.+.+.. ......||+||| ++|.+.+.+.|.+.
T Consensus 145 -~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~ 189 (233)
T cd06220 145 -DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDER 189 (233)
T ss_pred -eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 221 13456665443321 233468999999 89999999888653
No 77
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.83 E-value=2.4e-20 Score=195.97 Aligned_cols=143 Identities=33% Similarity=0.538 Sum_probs=124.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
.+-.|||+||||||+++|+.+++++.+. ...++++|++ |+..+ ++ +.++.|++.|+-+|+|| +..|++
T Consensus 47 ~~~~vfy~s~~GtA~~~A~~~~e~~~sl--d~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~~ 114 (601)
T KOG1160|consen 47 IKSKVFYSSLTGTAKKAAKSVHEKLKSL--DELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFLQ 114 (601)
T ss_pred ccceEEEEeccchHHHHHHHHHHHHHhc--ccchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHHH
Confidence 3447999999999999999999999987 6668899999 87777 77 66677777777699988 889999
Q ss_pred HHhccCCC----CCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHHHHH
Q 005496 164 WFTEGNDR----GPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 238 (694)
Q Consensus 164 ~L~~~~~~----~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~ 238 (694)
||.+...+ +.+|++++||||||||+.| ++||..||+.|+++..|||+|+.|+|++|-++ ..+++|...+.+.
T Consensus 115 ~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~~ 191 (601)
T KOG1160|consen 115 WLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAET 191 (601)
T ss_pred HHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHHH
Confidence 99985544 5789999999999999997 99999999999999999999999999999763 4455999999999
Q ss_pred HHh
Q 005496 239 LDQ 241 (694)
Q Consensus 239 L~~ 241 (694)
|++
T Consensus 192 Lk~ 194 (601)
T KOG1160|consen 192 LKD 194 (601)
T ss_pred HcC
Confidence 876
No 78
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.83 E-value=3.6e-20 Score=191.29 Aligned_cols=172 Identities=13% Similarity=0.118 Sum_probs=130.1
Q ss_pred CChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEee
Q 005496 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 456 ~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (694)
..+|||+.+..| ....|+|||+|.|.. .+.++|+|+. .|..|+||.++++| +.+.|.+|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G------~~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPG------EKLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCC------CEEEEEcc
Confidence 467898888753 456799999999854 4788988873 38899999999999 89999999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|+|.+..+..++++|||+|||||||++++++... ...+++||||+|+++ |.+|.+||+++. . ....
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAA------NGNKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHH------CCCeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEE
Confidence 99776554446799999999999999999998764 236899999999998 999999998872 1 1222
Q ss_pred EecCCC--CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHH
Q 005496 613 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 665 (694)
Q Consensus 613 fSR~~~--~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~ 665 (694)
.++++. ..+++++.. ..+ . ...+..+|+||| +.|++.+.+.|.+..
T Consensus 154 ~~~~~~~~~~g~v~~~~----~~~-~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSD----KPI-P-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhh----hhh-h-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 344432 334554431 111 1 123468999999 899999999987753
No 79
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.83 E-value=8.8e-20 Score=172.59 Aligned_cols=131 Identities=17% Similarity=0.191 Sum_probs=105.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE-EEcCCCCCc--CchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYAM--DDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~-v~dl~~~d~--~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (694)
|+++|+|+|+|||||++|+.|++.+... |+.++ +.++.+++. .+ +.+++.+||++||||.|.+|+++..
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~~~~------~~~~d~iilgs~t~~~g~~p~~~~~ 72 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKD--GHEVDILHRIGTLADAPLD------PENYDLVFLGTWTWERGRTPDEMKD 72 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhC--CeeEEecccccccccCcCC------hhhCCEEEEEcCeeCCCcCCHHHHH
Confidence 5799999999999999999999999877 77776 556664322 23 6678999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEEEecCcch--hHHHHHHHHHHHHHHHcCCeEeecceeecCCC---CchHHHHHHHHHH
Q 005496 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELV 235 (694)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~---~~e~~~~~W~~~l 235 (694)
|++++.. +++++++||+||+.| ++||.+++.++++|++++ |..+.+... ...+.+.+|.+++
T Consensus 73 fl~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 73 FIAELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PVLKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred HHHHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----CceeEecCCcccccHHHHHHHHHHh
Confidence 9998753 578999999999999 799999999999997762 333333222 2456778898765
No 80
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.82 E-value=3.2e-20 Score=208.74 Aligned_cols=187 Identities=16% Similarity=0.110 Sum_probs=148.3
Q ss_pred HHHHHhhhcccCCCCchhhHHHHHHHHHHHHhHhhheeeccCCCCCcccCCCCCCCCCCCCchhhHHHHhc-----CCCe
Q 005496 11 KFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----GKTK 85 (694)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 85 (694)
++|.++|++++.+ ++++.+||++ ||. +||++.. ++++.|.+ .+++
T Consensus 204 ~~v~~~l~~~~~l--~l~~~~i~p~-HG~-------i~r~~~~--------------------~~l~~Y~~~~~~~~~~k 253 (479)
T PRK05452 204 RLVTPKITEILGF--NLPVDMIATS-HGV-------VWRDNPT--------------------QIVELYLKWAADYQEDR 253 (479)
T ss_pred HHHHHHHHHHhhc--CCCCCEEECC-CCc-------eEeCCHH--------------------HHHHHHHHHhhccCcCc
Confidence 4688999999976 7788999999 999 8997654 34444432 4788
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 005496 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (694)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L 165 (694)
|+|+|+|+|||||++|+.|++.+++.-.|+.++++++++.+.++ ++.++.+++.+||+|||||+|.+| .+..|++.|
T Consensus 254 v~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~~l 330 (479)
T PRK05452 254 ITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLEEI 330 (479)
T ss_pred EEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHHHHHh
Confidence 99999999999999999999999865124678999999988876 555666789999999999887777 689999999
Q ss_pred hccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHHHHHHHHHHH
Q 005496 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELD 240 (694)
Q Consensus 166 ~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W~~~l~~~L~ 240 (694)
.... ++|+++++|| +|+|+|.+++.+.++|+++|++.+ +........ ...+.+..+.+.+..++.
T Consensus 331 ~~~~-----l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 331 TGLR-----FRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred hccC-----cCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 8764 8999999999 799999999999999999999986 434444332 233444566666655554
No 81
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.82 E-value=2.8e-20 Score=196.31 Aligned_cols=172 Identities=17% Similarity=0.158 Sum_probs=128.9
Q ss_pred CChHHHHHHhcCC-CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEE-EEEeeC
Q 005496 456 PPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRP 533 (694)
Q Consensus 456 ~p~~~ll~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~v~~~~ 533 (694)
..+|||+.+..+. ..+|+|||+|++.. .+.++|+|+. .|..|++|.++++| +.+ .|.+|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~G------d~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEG------DSILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCC------CEEeeEEcCC
Confidence 4689998886453 34689999998744 5789998874 38899999999999 899 799999
Q ss_pred CCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
|+|..+.+ .+|+||||+|+||||+++++++... ...+++||||.|+++ |.+|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~------~~~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKE------AGNKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHH------CCCeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 97655433 5799999999999999999998653 225799999999999 99999999987752 222 2
Q ss_pred ecCCC--CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 614 SREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 614 SR~~~--~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+.++. .+++|++.+.+... + ......||+||| ++|++.|.+.|.+.
T Consensus 156 ~~d~~~g~~G~v~~~l~~~~~---~-~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKELLE---S-GKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred cCCCCcCcccchHHHHHHHhh---c-CCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 33332 34566654433211 1 112457999999 99999999887653
No 82
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.82 E-value=5.6e-20 Score=190.53 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=129.3
Q ss_pred CCChHHHHHHhcC-CCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEE-EEEee
Q 005496 455 TPPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~v~~~ 532 (694)
...+|||+.+..+ ....|+|||+|.|.. .+.++|+|+. .|..|.+|.++++| +.+ .+.+|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G------~~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEG------DKIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCC------CEeeeeecC
Confidence 3468998887633 235799999998754 4688888873 38889999999998 788 69999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.+.. ...|+||||+||||||+++++++... ...+++||||+|+.+ |++|.+||+++.+. ++.+
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~------~~~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKE------AGNRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHH------cCCeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 99876553 35799999999999999999998664 225899999999998 99999999999652 2222
Q ss_pred EecCCC--CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~--~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+++.. ..+|+++.+.+... . ......||+||| ++|++.+.+.|.+
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELIE---S-GEKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred -eCCCCCCccccchHHHHHHHh---c-cCCccEEEEECC-HHHHHHHHHHHHH
Confidence 34332 34566654433211 1 123457999999 9999999988764
No 83
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.80 E-value=6.1e-19 Score=169.01 Aligned_cols=143 Identities=24% Similarity=0.312 Sum_probs=117.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
|++|.|+|+|+|||||.+|+.|+++|.+. ++++.+......+... +..++.+++++||+|.|+.|+++..|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~--~~~~~~~~~~~~~~~~------~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD--GFEVDIDIRPGIKDDL------LESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC--CceEEEeecCCcchhh------hccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 67899999999999999999999999887 7777444444333323 347899999999999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhH-HHHHHHHHHHHHHHcC--CeEeecceee--cCCC--CchHHHHHHHHHH
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQG--GARLVPLGLG--DDDQ--CIEDDFTAWRELV 235 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~i~~~g~g--D~~~--~~e~~~~~W~~~l 235 (694)
..+.... +++++||+||+||+.|.. ||.++..+...|+..| +....+.... |... ..++....|.+++
T Consensus 73 ~~~~~~~-----~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEPID-----FKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcccC-----cCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 9998733 899999999999999977 9999999999999999 5555555444 3332 6789999999988
Q ss_pred HHH
Q 005496 236 WPE 238 (694)
Q Consensus 236 ~~~ 238 (694)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 754
No 84
>PLN02252 nitrate reductase [NADPH]
Probab=99.80 E-value=1.9e-19 Score=214.01 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=141.0
Q ss_pred CChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEee
Q 005496 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 456 ~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (694)
.++|||+.+.++ ....|+|||+|++.. .+.++|+|+++...........|.+|+||.++++| +.|.|.+|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vG------d~V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIG------DTIDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCC------CEEEEecC
Confidence 467888777532 234799999999865 57899999976211100111359999999999999 89999999
Q ss_pred CCCcc--------cCCC--CCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHH
Q 005496 533 PSNFK--------LPAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (694)
Q Consensus 533 ~g~F~--------lp~~--~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~ 602 (694)
.|.|. ++.+ ..++++|||+|||||||+++|++.+.. .....+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~---~~d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD---PEDKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc---cCCCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 98764 3322 247999999999999999999988752 22457899999999998 9999999999998
Q ss_pred cC-CeeEEEEEEecCC-C----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHH-HHHHHHH
Q 005496 603 EG-VISELILAFSREG-S----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARD-VHRTLHT 663 (694)
Q Consensus 603 ~g-~~~~l~~afSR~~-~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~-V~~~L~~ 663 (694)
.. ..++++.++|++. . .+++|...+.+. .......+..+|+||| ++|++. +...|.+
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~ 877 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGP-PPMIEFACQPNLEK 877 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCC-HHHHHHHHHHHHHH
Confidence 75 5678888999853 1 245565443221 1111123568999999 899985 6767654
No 85
>PRK05802 hypothetical protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=194.00 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=125.4
Q ss_pred ChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeC
Q 005496 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (694)
Q Consensus 457 p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~ 533 (694)
.+|||+.+..|. ...|+|||+|+|.. .+.++|+|++ .|..|++|.++++| +.+.|.+|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~G------d~l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKG------DEILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCC------CEEEEeCCC
Confidence 478888776432 34599999999854 5789999985 39999999999999 899999998
Q ss_pred C--CcccC---CCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeE
Q 005496 534 S--NFKLP---ANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 608 (694)
Q Consensus 534 g--~F~lp---~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~ 608 (694)
| .|.++ ....+++|+||+|+||||+++++++... ++ .+++||||.|+++ |.+|++||+++......++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~---~~---~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~~ 230 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS---NG---NKIIVIIDKGPFK-NNFIKEYLELYNIEIIELN 230 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH---cC---CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEEE
Confidence 5 47663 2335699999999999999999998765 22 4799999999998 9999999999865422221
Q ss_pred EEEEEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 609 LILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 609 l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
+ . .++......++.+.+..++. +...||+||| ..|++.|.+.|.+.
T Consensus 231 ~---~-ddG~~~~~~~g~v~~~l~~~-----~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 231 L---L-DDGELSEEGKDILKEIIKKE-----DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred e---c-ccCCCCccccchHHHHhcCC-----CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1 1 22211111222222211110 2367999999 99999999988764
No 86
>PRK09267 flavodoxin FldA; Validated
Probab=99.79 E-value=2.7e-18 Score=167.58 Aligned_cols=142 Identities=25% Similarity=0.450 Sum_probs=117.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
||+++|+|+|+||||+++|+.|++.+.. ..+.++++.+.+..+ +..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~~~------l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASKED------FEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCHhh------HhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999853 247888988876555 788999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcc-h-hHHHHHHHHHHHHHHHcCCeEeecc---eee-----------------cC
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL---GLG-----------------DD 220 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~---g~g-----------------D~ 220 (694)
+.+.... |+++++++||+||+. | ++||.+.+.+.+.|++.|++.+... |.. |.
T Consensus 71 ~~~~~~~-----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEID-----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcCC-----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 8885543 889999999999985 8 8999999999999999999877552 111 21
Q ss_pred CC---CchHHHHHHHHHHHHHH
Q 005496 221 DQ---CIEDDFTAWRELVWPEL 239 (694)
Q Consensus 221 ~~---~~e~~~~~W~~~l~~~L 239 (694)
+. -.++..++|.+++.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 11 13688899999987764
No 87
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.79 E-value=1.8e-18 Score=179.25 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=139.5
Q ss_pred ChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeC
Q 005496 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (694)
Q Consensus 457 p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~ 533 (694)
|.|+.+.+.+|. +--|+||..|++.. .+.+++.|++.. +|.+|.||.+++.| +.|.+++|.
T Consensus 83 p~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~---------~G~mS~~l~~LkiG------d~ve~rGP~ 146 (286)
T KOG0534|consen 83 PIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYP---------KGKMSQHLDSLKIG------DTVEFRGPI 146 (286)
T ss_pred ccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEecc---------CCcccHHHhcCCCC------CEEEEecCc
Confidence 455555444332 35799999999976 689999998764 59999999999999 899999999
Q ss_pred CCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCC-eeEEEEE
Q 005496 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELILA 612 (694)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~-~~~l~~a 612 (694)
|+|.+.....+.+.|||+||||||+..++|+.+.. ..+..+++|+|++++++ |.++++||+.++.+.+ .++++.+
T Consensus 147 G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~---~~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y~ 222 (286)
T KOG0534|consen 147 GEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKD---PEDTTKISLLYANKTED-DILLREELEELASKYPERFKVWYV 222 (286)
T ss_pred cceEecCCCcceEEEEecccchhhHHHHHHHHhcC---CCCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEEE
Confidence 99988876678999999999999999999998862 22467899999999999 9999999999999866 8889999
Q ss_pred EecCCC----CcccccchhHHhHHHHHhccc---C-CcEEEEeCCccchHHH
Q 005496 613 FSREGS----QKEYVQHKMMDKAAQLWSLLS---K-EGYLYVCGDAKGMARD 656 (694)
Q Consensus 613 fSR~~~----~k~yVq~~l~~~~~~l~~ll~---~-~~~iYvCG~a~~M~~~ 656 (694)
.+++.. .++||..- .+...+. + ...++|||| ++|...
T Consensus 223 v~~~~~~w~~~~g~It~~------~i~~~l~~~~~~~~~~liCGP-p~m~~~ 267 (286)
T KOG0534|consen 223 VDQPPEIWDGSVGFITKD------LIKEHLPPPKEGETLVLICGP-PPMING 267 (286)
T ss_pred EcCCcccccCccCccCHH------HHHhhCCCCCCCCeEEEEECC-HHHHhH
Confidence 998774 34565432 2333332 2 478999999 999974
No 88
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.78 E-value=7.3e-19 Score=176.41 Aligned_cols=185 Identities=18% Similarity=0.323 Sum_probs=145.7
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEEE
Q 005496 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (694)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImI 549 (694)
.-|.||.+|.|.+ .+.|-+-|++-.-+-.+.....|.||+|+.+|+|| ++|.|++|.|.|... +.++|+|+|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpG------DKvtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCC------CeEEEeccchhhhhc-cCCCceEEE
Confidence 4589999999976 57888888876533333456789999999999999 899999999977654 567899999
Q ss_pred ecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCc------ccc
Q 005496 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK------EYV 623 (694)
Q Consensus 550 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k------~yV 623 (694)
++|.|.||+|+-|-+.+.... ..+++.+.||+|... +.+|++|++++++..++|+.|+|+|.+.++. +++
T Consensus 282 gGGAGmapmRSHIfDqL~rlh---SkRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLH---SKRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhc---ccceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 999999999998877665432 568999999999998 9999999999999999999999999976632 333
Q ss_pred cchhHHhHHHHHhcc-cCCcEEEEeCCccchHHHHHHHHHHHHHHcc
Q 005496 624 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQE 669 (694)
Q Consensus 624 q~~l~~~~~~l~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~ 669 (694)
...+.+. .+.++= .++..+|+||| +-|-..|-+.|.+...+..
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~e 401 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCcccc
Confidence 3333332 122221 24689999999 8888888888887655443
No 89
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.77 E-value=1.2e-18 Score=214.93 Aligned_cols=186 Identities=16% Similarity=0.260 Sum_probs=140.3
Q ss_pred CChHHHHHHhcC--C-CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEee
Q 005496 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (694)
Q Consensus 456 ~p~~~ll~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~ 532 (694)
..+|||+.+..+ + ...|+|||+|.|.. .+.++|+|+. ..|.+|+||+++++| +.|.|.+|
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~G------d~v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPG------DSVEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCC------CEEEEeCC
Confidence 578999998743 1 23599999999954 5778888862 149999999999999 89999986
Q ss_pred CC----------CcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHH
Q 005496 533 PS----------NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (694)
Q Consensus 533 ~g----------~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~ 602 (694)
.| .|.++.+..+|+||||+|||||||++++++.+... ......+++||||+|+.+ |.+|++||++|.+
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~-~~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKP-YVDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCc-ccCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 44 46666556689999999999999999999876510 001246899999999999 9999999999988
Q ss_pred cCC-eeEEEEEEecCCC----CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 603 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 603 ~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
... .++++.++|++++ ..++|++.+.+. +......+..||+||| ++|++.|.+.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 644 5789999998643 235665433221 1111124568999999 89999999888653
No 90
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.3e-18 Score=177.17 Aligned_cols=163 Identities=17% Similarity=0.268 Sum_probs=128.4
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEeeCCCcccCCCCCCCe
Q 005496 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (694)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~pi 546 (694)
.+.|.+||||++... ++++++|+. .|..|.-|++ +++| +++.|.+|+|.|......++ -
T Consensus 259 ~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G------~k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVG------TKLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCC------ceEEEecCcceeecccCCcc-c
Confidence 457889999999853 478888874 4999999998 9999 89999999999988754333 9
Q ss_pred EEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCccccc-c
Q 005496 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ-H 625 (694)
Q Consensus 547 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq-~ 625 (694)
|.||+|+|||||+|+++..... ....+++|||.|||.+ +-+|.+||+++++..+++.++.. |...++|+. +
T Consensus 319 VWIAGGIGITPFis~l~~l~~~----~s~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHii---DSs~~g~l~~e 390 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAER----KSDPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHII---DSSKDGYLDQE 390 (438)
T ss_pred EEEecCcCcchHHHHHHhhccc----ccCCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEe---cCCCCCccCHH
Confidence 9999999999999999987652 2568999999999999 99999999999998888778873 333556663 2
Q ss_pred hhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHH
Q 005496 626 KMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 664 (694)
Q Consensus 626 ~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i 664 (694)
.+..+.+ . ...-.||.||| .+|++.+++.|+..
T Consensus 391 ~ler~~~-~----~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 391 DLERYPD-R----PRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred Hhhcccc-c----cCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 2222210 0 11237999999 99999999988764
No 91
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.73 E-value=1.3e-17 Score=168.08 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=122.0
Q ss_pred CCChHHHHHHhcCCC----CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcC------CCCCCCCc
Q 005496 455 TPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI------PLEGNGDC 524 (694)
Q Consensus 455 ~~p~~~ll~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~------~g~~~~~~ 524 (694)
...+|||+.+.+|.. +.|+|||+|+|....+.++|+|+.. .|.+|.++.++. .+
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~------ 87 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVS------ 87 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCce------
Confidence 456888888876654 7899999999864347899998743 388888888876 44
Q ss_pred cEEEEEeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcc-cccHHHHHhhHHc
Q 005496 525 SWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMD-FIYEDELNNFEEE 603 (694)
Q Consensus 525 ~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D-~ly~del~~~~~~ 603 (694)
..+.|.+|.|.|..+.....++||||+||||||+++++++......+.....++.|+|++|+.+ | ..|.+||....+.
T Consensus 88 ~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~ 166 (210)
T cd06186 88 LKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQEL 166 (210)
T ss_pred eEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhc
Confidence 7899999999887444456799999999999999999999876322111357899999999998 6 5799999751111
Q ss_pred CCeeEEEEEEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 604 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 604 g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
....++.+.+++ +|+||| .+|+++++....+
T Consensus 167 ~~~~~~~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 167 EVDGEIEIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred cCCceEEEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 111023333333 999999 8899999987765
No 92
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.72 E-value=9.8e-18 Score=172.36 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=119.9
Q ss_pred ChHHHHHHhcCC----------------------CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh
Q 005496 457 PIGVFFAAVAPH----------------------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 514 (694)
Q Consensus 457 p~~~ll~~~~p~----------------------l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~ 514 (694)
.+|||+.+.+|. ...|+|||+|.+.. .+.++|.|++.. ..|..|+||.+
T Consensus 28 ~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l~~ 98 (235)
T cd06193 28 GPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWAAS 98 (235)
T ss_pred CCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHHhh
Confidence 578888886443 34699999998753 578898887532 12899999999
Q ss_pred cCCCCCCCCccEEEEEeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccH
Q 005496 515 AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYE 594 (694)
Q Consensus 515 l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~ 594 (694)
+++| +.|.|.+|.|.|.++. ...+++|||+||||||+++++++... ..++++|||+|+++ |.++.
T Consensus 99 l~~G------d~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~-------~~~~~~~~~~~~~~-d~~~l 163 (235)
T cd06193 99 AQPG------DTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA-------DARGTALIEVPDAA-DEQPL 163 (235)
T ss_pred CCCC------CEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC-------CCeEEEEEEECCHH-Hcccc
Confidence 9999 8999999999998764 45799999999999999999997532 26899999999986 65544
Q ss_pred HHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 595 DELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 595 del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+++. .++++.+.++++. ..... .+ .........++..+|+||+ ++|++.+++.|.+
T Consensus 164 ~~~~-------~~~~~~~~~~~~~-~~~~~-~~---~~~~~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 164 PAPA-------GVEVTWLHRGGAE-AGELA-LL---AVRALAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred CCCC-------CcEEEEEeCCCCC-cchhH-HH---HHhcccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 3322 2245544443322 11111 00 0001111224579999999 8999999987764
No 93
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.72 E-value=2.2e-17 Score=196.62 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=131.5
Q ss_pred CChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEE-EEEeeC
Q 005496 456 PPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRP 533 (694)
Q Consensus 456 ~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~v~~~~ 533 (694)
..+|||+.+..+.. .+|+|||+|.+.. .+.++|+|+++ |..|++|+++++| +.+ .|.+|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~G------d~v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEG------DYITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCC------CEeCeEeCCC
Confidence 46899999874543 4589999999854 57899999753 8899999999999 899 799999
Q ss_pred CCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEE
Q 005496 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (694)
Q Consensus 534 g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~af 613 (694)
|+|.++.. .++++|||+|+||||+++++++... + ..+++||||.|+.+ |++|.+||+++... ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~---~---~~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKA---A---GNRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHH---C---CCeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 98876533 4799999999999999999998764 2 24899999999998 99999999988652 2222
Q ss_pred ecCCC--CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 614 SREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 614 SR~~~--~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+.++. .+++|++.+.+... ...+...||+||| ++|++.|.+.|.+
T Consensus 156 t~dg~~g~~G~v~~~l~~~~~----~~~~~~~vy~CGP-~~M~~~v~~~l~~ 202 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVIK----RETKVDKVFAIGP-AIMMKFVCLLTKK 202 (752)
T ss_pred ECCCCCCCcccHHHHHHHHhh----cCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 23332 45677775543221 1112357999999 9999999987754
No 94
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.68 E-value=8.3e-17 Score=144.82 Aligned_cols=104 Identities=23% Similarity=0.439 Sum_probs=82.3
Q ss_pred EEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCe-eEEEEEEecCCC----Cccc
Q 005496 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFSREGS----QKEY 622 (694)
Q Consensus 548 mIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~-~~l~~afSR~~~----~k~y 622 (694)
|||+|||||||++++++++.. ...++++||||+|+.+ |++|++||+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER----NDNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH----TCTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHh----CCCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 899999999999999998864 2678999999999999 99999999999987654 344433 44433 3678
Q ss_pred ccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHH
Q 005496 623 VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHR 659 (694)
Q Consensus 623 Vq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~ 659 (694)
|++.+.+.... ......+..||+||| ++|++.|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99888665433 233456899999999 999999874
No 95
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.68 E-value=1e-16 Score=171.55 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=140.6
Q ss_pred chHHHHHHhhhcccCCCCchhhHHHHHHHHHHHHhHhhheeeccCCCCCcccCCCCCCCCCCCCchhhHHHHhc-----C
Q 005496 8 DLVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----G 82 (694)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 82 (694)
...++|.++++++. .+++.||||+ ||. +||++.. +++++|.+ .
T Consensus 198 p~~~~v~~~l~~~~----~l~i~~IaP~-HG~-------i~~~~~~--------------------~i~~~Y~~W~~~~~ 245 (388)
T COG0426 198 PNARLVLWALKKIK----LLKIEMIAPS-HGP-------IWRGNPK--------------------EIVEAYRDWAEGQP 245 (388)
T ss_pred ccHHHHHHHHhhhc----ccCccEEEcC-CCc-------eeeCCHH--------------------HHHHHHHHHHccCC
Confidence 34678999999988 4799999999 999 9998775 55555554 2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
..+|.|+|.|++|+|+.+|++|++.|.+. |+.+.++++.+.+.++ +...+.+++.++++|||+ ++++++.+..++
T Consensus 246 ~~~V~l~Y~smyg~T~~ma~aiaegl~~~--gv~v~~~~~~~~~~~e--I~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l 320 (388)
T COG0426 246 KGKVDLIYDSMYGNTEKMAQAIAEGLMKE--GVDVEVINLEDADPSE--IVEEILDAKGLVVGSPTI-NGGAHPPIQTAL 320 (388)
T ss_pred cceEEEEEecccCCHHHHHHHHHHHhhhc--CCceEEEEcccCCHHH--HHHHHhhcceEEEecCcc-cCCCCchHHHHH
Confidence 34799999999999999999999999998 9999999999887776 888899999999999999 555555677799
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecce
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (694)
..+.... .+++..+||| +|+|-+.+.+.+.++|+++|.+...+-.
T Consensus 321 ~~v~~~~-----~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~~i 365 (388)
T COG0426 321 GYVLALA-----PKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFDGI 365 (388)
T ss_pred HHHHhcc-----CcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEeccce
Confidence 9988866 6788999999 8999999999999999999999876643
No 96
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.67 E-value=3.4e-16 Score=188.70 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=130.1
Q ss_pred CCChHHHHHHhcC-CCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEE-EEee
Q 005496 455 TPPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP-IFIR 532 (694)
Q Consensus 455 ~~p~~~ll~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~-v~~~ 532 (694)
...+|||+.+..+ ....|+|||+|.+.. .+.++|+|+++ |..|.+|.++++| +.+. |.+|
T Consensus 676 ~~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~G------d~l~~I~GP 737 (944)
T PRK12779 676 SAQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIG------DAFSGIAGP 737 (944)
T ss_pred cCCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCc------CEEeeeecC
Confidence 3468999988732 234599999998744 57899998743 8889999999999 8894 9999
Q ss_pred CCCcc-cCC-CCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHH---HhhHHc-CCe
Q 005496 533 PSNFK-LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDEL---NNFEEE-GVI 606 (694)
Q Consensus 533 ~g~F~-lp~-~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del---~~~~~~-g~~ 606 (694)
.|+|. ++. ...+++||||+|+||||+++++++... . ..+++|+||+|+++ |.+|.+++ ++|++. +..
T Consensus 738 lG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~---~---g~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~ 810 (944)
T PRK12779 738 LGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR---L---GNHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQ 810 (944)
T ss_pred CCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH---C---CCCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCC
Confidence 99764 443 234699999999999999999998764 2 25899999999997 88887764 556554 333
Q ss_pred eEEEEEEecCCC--CcccccchhHHhHHHHHhccc-CCcEEEEeCCccchHHHHHHHHHH
Q 005496 607 SELILAFSREGS--QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 607 ~~l~~afSR~~~--~k~yVq~~l~~~~~~l~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
++++++ +.++. .+++|.+.+.+...+....-. ....||+||| ++|++.|.+.|.+
T Consensus 811 ~~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~ 868 (944)
T PRK12779 811 LDVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKP 868 (944)
T ss_pred eEEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHH
Confidence 445544 44432 457787765443211100000 1357999999 9999999987754
No 97
>PRK05569 flavodoxin; Provisional
Probab=99.65 E-value=2.1e-15 Score=142.68 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=99.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCC-hhHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p-~na~~F 161 (694)
|++++|+|+|+||||+++|+.|++++.+. |+.++++++.+.+..+ +.+++.++|++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEA--GAEVTIKHVADAKVED------VLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhC--CCeEEEEECCcCCHHH------HhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 45899999999999999999999999877 7889999999887766 88999999999999888764 789999
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcchhHH-HHHHHHHHHHHHHcCCeEeec
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~i~~ 214 (694)
++.+.... ++|+++++|| +|+|. +.+.+.+.+.|++.|++.+.+
T Consensus 73 ~~~l~~~~-----~~~K~v~~f~----t~g~~~~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFKLTP-----NENKKCILFG----SYGWDNGEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhhccC-----cCCCEEEEEe----CCCCCCCcHHHHHHHHHHHCCCeEeee
Confidence 99987643 6899999999 45554 567888999999999998765
No 98
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.65 E-value=5.1e-16 Score=142.66 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=73.7
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhc
Q 005496 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (694)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~ 167 (694)
|+|+|+|||||+|++++ |..+..+.+++.+..+ + .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~l---------g~~~~~i~~~~~d~~~------~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKL---------GFQHIRIPVDETDDIH------V-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHc---------CCCcEEeecCCcchhh------c-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 78999999999995443 3334445666544433 4 5666655 9999999999999999887643
Q ss_pred cCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHH
Q 005496 168 GNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCK 206 (694)
Q Consensus 168 ~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~ 206 (694)
+.+||||+||+.| ++||.+++.+.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 6899999999999 9999999999999987
No 99
>PRK05568 flavodoxin; Provisional
Probab=99.65 E-value=1.7e-15 Score=143.41 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=99.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCC-hhHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p-~na~~F 161 (694)
|++++|+|+|+||||+++|+.|++.+.+. |+.++++++.+.+..+ +.+++.++|++|||+.|.+| ..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKEN--GAEVKLLNVSEASVDD------VKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHC--CCeEEEEECCCCCHHH------HHhCCEEEEECCccCcccccchhHHHH
Confidence 45799999999999999999999999877 8889999999887766 88999999999999888864 789999
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcchhHH-HHHHHHHHHHHHHcCCeEeeccee
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVPLGL 217 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~i~~~g~ 217 (694)
++.+... ++++++++||. |+|. +.+.+.+.+.|+++|++.+.+...
T Consensus 73 ~~~~~~~------~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~~~~ 119 (142)
T PRK05568 73 VESISSL------VKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNEGLI 119 (142)
T ss_pred HHHhhhh------hCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCCcEE
Confidence 9887542 68999999995 5543 456799999999999998876333
No 100
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.60 E-value=2.5e-15 Score=182.70 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=125.9
Q ss_pred CChHHHHHHhcCC-CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhh-hhcCCCCCCCCccEE-EEEee
Q 005496 456 PPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWA-PIFIR 532 (694)
Q Consensus 456 ~p~~~ll~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L-~~l~~g~~~~~~~~v-~v~~~ 532 (694)
..+|||+.+..+. ...|+|||++.+.. .+.++|.|++ .|..|.|| .++++| +.+ .+.+|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~G------d~l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAG------DTFEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCC------CEEeeeecC
Confidence 3689999987433 34699999998743 4678888774 38999998 579999 788 79999
Q ss_pred CCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEE
Q 005496 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (694)
Q Consensus 533 ~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~a 612 (694)
.|.|.... ..+++||||+|+||||+++++++... . ..+++++||+|+++ +.+|.+||+.+... ++++
T Consensus 90 lG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~---~---g~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v~ 156 (1006)
T PRK12775 90 LGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKE---A---GARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIVC 156 (1006)
T ss_pred CCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHh---C---CCcEEEEEeCCChH-HcccHHHHHhhcCc-----EEEE
Confidence 99665432 24689999999999999999997654 2 25699999999998 99999999876542 2222
Q ss_pred EecCCC--CcccccchhHHhHHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 613 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 613 fSR~~~--~k~yVq~~l~~~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
+.++. .+++|.+.+.+... + .....||+||| ..|++.|.+.+.+
T Consensus 157 -tddgs~G~~G~vt~~l~~~l~---~--~~~d~vy~CGP-~~Mm~av~~~~~~ 202 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEVCE---K--DKPDLVVAIGP-LPMMNACVETTRP 202 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHHhc---c--CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 33332 45677765543211 0 12357999999 8999999987754
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.50 E-value=2.9e-13 Score=126.47 Aligned_cols=121 Identities=21% Similarity=0.364 Sum_probs=89.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCC----CCCChhHHH
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGD----GEPTDNAAR 160 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~----G~~p~na~~ 160 (694)
.+.|+|.|.||||+++|++|... ...+++++. +. +..++.+++++||||+ |+.|+...+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~---------~~~i~i~~~--~~------~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLP---------ATRIPINER--ER------LEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCc---------ceEEecCCC--cc------ccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 47899999999999999888543 124455432 12 4567789999999999 699999998
Q ss_pred HHHHHhccCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHcCCeEeecceeecCCCC---chHHHHHHHHHHH
Q 005496 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQC---IEDDFTAWRELVW 236 (694)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~---~e~~~~~W~~~l~ 236 (694)
|++...+ ....++|||+||++| ++||.+++.+.+++. .|...-=+..+ ..+.+.+|.+++|
T Consensus 65 Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~-------vp~l~k~El~gt~~Dv~~~~~~~~~~~ 129 (134)
T PRK03600 65 FLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ-------VPLLYRFELSGTNEDVENVRKGVEEFW 129 (134)
T ss_pred HHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 8877433 246899999999999 889999999999976 23322222222 3455577887776
Q ss_pred H
Q 005496 237 P 237 (694)
Q Consensus 237 ~ 237 (694)
.
T Consensus 130 ~ 130 (134)
T PRK03600 130 Q 130 (134)
T ss_pred h
Confidence 5
No 102
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.49 E-value=3e-13 Score=128.55 Aligned_cols=136 Identities=15% Similarity=0.258 Sum_probs=89.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecC-CCCCCChhHHH-
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATY-GDGEPTDNAAR- 160 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTy-G~G~~p~na~~- 160 (694)
|+++.|+|.|+||||++||++|...+.++..+..+..+++.++..++. ..+.....+|+++||| |.|.+|+++..
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~~ 77 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDVE 77 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCccc
Confidence 356899999999999999999998765431122233466555543210 0145667899999999 88866654321
Q ss_pred -----HHHHHhccCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHH
Q 005496 161 -----FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (694)
Q Consensus 161 -----F~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~ 233 (694)
..++|.... .+++.+||||+||++| +.||.+|+.+++. .+.-.+.. =+-.+..+|.+.-.+
T Consensus 78 ~vp~~v~dFL~~~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~----fEl~GT~~Dv~~v~~ 144 (154)
T PRK02551 78 ILTTPLGDFIAYHD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLAD----FELRGTPSDIERIAA 144 (154)
T ss_pred cchHHHHHHHcchh-----hhhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEE----eeccCCHHHHHHHHH
Confidence 223332221 3578899999999999 8999999999986 44433332 233345555554443
No 103
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.42 E-value=9.6e-13 Score=153.07 Aligned_cols=185 Identities=13% Similarity=0.092 Sum_probs=123.6
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCC----CCCCCCccE
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIP----LEGNGDCSW 526 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~----g~~~~~~~~ 526 (694)
+..+||++.+..|. .+.|+|||+|+|...++.++++|++. |-.|+.|.+ ++. |..+..+..
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 44678888876564 36799999998865567888888742 334555544 332 211112247
Q ss_pred EEEEeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhH----
Q 005496 527 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE---- 601 (694)
Q Consensus 527 v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~del~~~~---- 601 (694)
+.|.+|.|.|.++.....+++|||+|||||||++++++.....+.. ....++.|+|++|+.+ |..|.+++....
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 8899999988766444579999999999999999999987532111 1236899999999999 999999986322
Q ss_pred HcCCeeEEEEEEecCCCCcccccchhHHh--HHHHHhcccCCcEEEEeCCccc
Q 005496 602 EEGVISELILAFSREGSQKEYVQHKMMDK--AAQLWSLLSKEGYLYVCGDAKG 652 (694)
Q Consensus 602 ~~g~~~~l~~afSR~~~~k~yVq~~l~~~--~~~l~~ll~~~~~iYvCG~a~~ 652 (694)
.+....+++...+|+......+.+.+..- ..+++ +-.+...+.+||+...
T Consensus 486 ~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~ 537 (722)
T PLN02844 486 SNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESF 537 (722)
T ss_pred HHhcCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCch
Confidence 12234467888999876544444444331 12222 2224578999999543
No 104
>PRK06242 flavodoxin; Provisional
Probab=99.41 E-value=1.3e-12 Score=124.84 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=88.1
Q ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 84 TKVTVFYGTQ-TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 84 ~~v~I~YgSq-tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
|+++|+|+|+ ||||+++|+.|++.+. ++++++.+....+ +.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~~~------~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNPED------LSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCccc------HhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5789999999 7999999999999872 4567777666555 78899999999999 688888999888
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecc
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (694)
+.+.. +.++++++||.+..... ...+.+.+.|+.+|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~---~~~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFL---KYHKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcc---hHHHHHHHHHHHCCCEEEEEE
Confidence 87743 57899999996544432 237899999999999988764
No 105
>PLN02631 ferric-chelate reductase
Probab=99.41 E-value=5.7e-13 Score=154.26 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=111.6
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEE
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 530 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~ 530 (694)
+..+||++.+..|. .+.|+|||+|+|...++.++++|+. .|..|++|.+ ++.++ +...+.+.
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g---~~i~V~Ve 399 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSI---DSLEVSTE 399 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCC---CeeEEEEE
Confidence 44678877765554 4779999999986556789999873 4888999977 44321 11467788
Q ss_pred eeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhh------HHc
Q 005496 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNF------EEE 603 (694)
Q Consensus 531 ~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~del~~~------~~~ 603 (694)
+|+|.|..+.....++||||+|+||||+++++++.+....++ .+.+++.|+||.|+.+ |.+|.||++.+ .+
T Consensus 400 GPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~- 477 (699)
T PLN02631 400 GPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS- 477 (699)
T ss_pred CCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh-
Confidence 999977666555578999999999999999999987642221 1235899999999998 99999999863 22
Q ss_pred CCeeEEEEEEecCCCC
Q 005496 604 GVISELILAFSREGSQ 619 (694)
Q Consensus 604 g~~~~l~~afSR~~~~ 619 (694)
..+.++...+||++..
T Consensus 478 ~~ni~i~iyVTR~~~~ 493 (699)
T PLN02631 478 RLNLRIEAYITREDKK 493 (699)
T ss_pred cCceEEEEEEcCCCCC
Confidence 3456788899997653
No 106
>PLN02292 ferric-chelate reductase
Probab=99.40 E-value=1.8e-12 Score=150.33 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=119.7
Q ss_pred CChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEEEEEe
Q 005496 456 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 456 ~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~v~~ 531 (694)
..+||++-+..|. .+.|+|||+|+|...++.++++|+. .|..|++|.+ ++.|+ +.....+.|.+
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd-~i~~~~V~VeG 419 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSD-QIDRLAVSVEG 419 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCC-ccccceEEEEC
Confidence 3567666554454 4789999999986446789998873 4778888887 45552 11123678999
Q ss_pred eCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcC-CCCCCEEEEEeecCCCcccccHHHHHhhH------HcC
Q 005496 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE------EEG 604 (694)
Q Consensus 532 ~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~del~~~~------~~g 604 (694)
|.|.+..+.....+++|||+|+||||+++++++..+....+ ....++.|+|+.|+++ |.++.+++.... .+.
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~ 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSF 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhc
Confidence 99977644334469999999999999999999887532111 1136899999999999 998877654322 122
Q ss_pred CeeEEEEEEecCCCCc-ccccchhHHhHHHHHhcc-----cCCcEEEEeCCcc
Q 005496 605 VISELILAFSREGSQK-EYVQHKMMDKAAQLWSLL-----SKEGYLYVCGDAK 651 (694)
Q Consensus 605 ~~~~l~~afSR~~~~k-~yVq~~l~~~~~~l~~ll-----~~~~~iYvCG~a~ 651 (694)
...++...++|+.+.+ .|-++ ..+.+...+ .+...+.+|||..
T Consensus 499 ~~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~ 547 (702)
T PLN02292 499 IDIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNS 547 (702)
T ss_pred CCceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCc
Confidence 3446777788876532 23333 222232221 2457899999943
No 107
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.29 E-value=4.7e-11 Score=119.56 Aligned_cols=127 Identities=19% Similarity=0.086 Sum_probs=96.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCch------------hH--HhhhccCCeEEEEEecC
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE------------QY--EEKLKKETLAFFMVATY 149 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~------------~~--~~~l~~~~~vif~~sTy 149 (694)
.+|+|+|+|+||||+++|+.+++.+++. +|++++++++.+...++. .+ ..++.+++.+||++|||
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~-~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREV-DGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhc-CCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc
Confidence 3699999999999999999999999752 268899998866432110 00 14477899999999999
Q ss_pred CCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
.|.+++.++.|++++...... ..+.+|.+++|+.+.....-...+...+...|..+|+..+.
T Consensus 80 -~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~ 141 (197)
T TIGR01755 80 -FGNMASQMRNFLDQTGGLWAS-GALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVP 141 (197)
T ss_pred -ccCccHHHHHHHHhccccccc-cccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeC
Confidence 899999999999998754211 23889999999965544444555667777778899997764
No 108
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.28 E-value=4.7e-11 Score=119.85 Aligned_cols=127 Identities=18% Similarity=0.091 Sum_probs=96.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCCeeEEEcCCCCCcCch--------------hHHhhhccCCeEEEEEe
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDE--------------QYEEKLKKETLAFFMVA 147 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~-~~~g~~~~v~dl~~~d~~~~--------------~~~~~l~~~~~vif~~s 147 (694)
|++|+|+|+|++|||+++|+.+++.+.+ . |++++++++.+....+. .-.+++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~--G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVA--GAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcC--CcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 3689999999999999999999999987 6 89999999865332210 00455788999999999
Q ss_pred cCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 148 TyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
|| .|.+|..++.|++++...... ..+.+|.+++|+...+..+---...+.+...|..+|+..+.
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~ 142 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWAK-GALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVG 142 (200)
T ss_pred cc-CCCchHHHHHHHHHhcccccc-CCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeC
Confidence 99 999999999999998653211 23889999999964433323334556677777899997764
No 109
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.18 E-value=8.5e-11 Score=115.67 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=75.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
|+++|+|+|.||||+++|+.|++++.. |+.++++++++.+..+ +.+++.|||++||| .|.+++.+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~---g~~v~~~~~~~~~~~~------l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE---GIQCDVVNLHRIEEPD------LSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC---CCeEEEEEhhhcCccC------HHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 579999999999999999999999963 5778899999877666 78899999999999 8888999998987
Q ss_pred HHhccCCCCCCCCCceEEEEEec
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGLG 186 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlG 186 (694)
..... |+++++++|++|
T Consensus 71 ~~~~~------l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHATQ------LNQMPSAFFSVN 87 (177)
T ss_pred HHHHH------hCCCeEEEEEec
Confidence 65432 889999999998
No 110
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.11 E-value=1.8e-11 Score=122.89 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=111.1
Q ss_pred CCCChHHHHHHhc--CCC---CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCCCCCCCCccEE
Q 005496 454 ATPPIGVFFAAVA--PHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWA 527 (694)
Q Consensus 454 ~~~p~~~ll~~~~--p~l---~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v 527 (694)
....+||++.++. |++ .-|.||.|+....-.+.++|.|+.+ -.|+.|+|+++ ++.| |.|
T Consensus 179 ~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVG------D~v 243 (385)
T KOG3378|consen 179 SHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVG------DIV 243 (385)
T ss_pred ccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhcccccc------cee
Confidence 3446788877641 332 2366666666554567888888754 36999999998 8888 899
Q ss_pred EEEeeCCCcccCC---CCCCCeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHc-
Q 005496 528 PIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE- 603 (694)
Q Consensus 528 ~v~~~~g~F~lp~---~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~- 603 (694)
.++.|.|+|.... +.++|++++++|+||+|+++++++.+. .|..| .+..-++++...
T Consensus 244 ~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-------------C~~~R------P~~~~~~~~~~K~ 304 (385)
T KOG3378|consen 244 GVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-------------CYSSR------PFKQWLEQLKLKY 304 (385)
T ss_pred eccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh-------------cCCCC------cHHHHHHHHHHHH
Confidence 9999999997753 467999999999999999999998664 22222 111112221111
Q ss_pred CCeeEEEEEEecCCC--CcccccchhHH--hHHHHHhcccCCcEEEEeCCccchHHHHHHHHHHHH
Q 005496 604 GVISELILAFSREGS--QKEYVQHKMMD--KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 665 (694)
Q Consensus 604 g~~~~l~~afSR~~~--~k~yVq~~l~~--~~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~ 665 (694)
..+.++.-.||.+.+ ++.-|...+.. +.+++-++--..++||.||| .++++.|...|.++-
T Consensus 305 k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~ 369 (385)
T KOG3378|consen 305 KENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLG 369 (385)
T ss_pred HHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhc
Confidence 001111112233322 22333322222 23334333335789999999 889999999998864
No 111
>PRK07116 flavodoxin; Provisional
Probab=99.06 E-value=1.3e-09 Score=105.53 Aligned_cols=133 Identities=16% Similarity=0.168 Sum_probs=86.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc-------------------h----hHHhhhccC
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-------------------E----QYEEKLKKE 139 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~-------------------~----~~~~~l~~~ 139 (694)
+|+++|+|.|.||||+++|+.|++.+... . .++.+...|+..+ . ....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d--~--~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGAD--L--FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCC--e--EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 57899999999999999999999998643 1 2333333222100 0 012246778
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEe-cCcchhHHHHHHHHHHHHHHHcCCeEeecceee
Q 005496 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (694)
Q Consensus 140 ~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (694)
+.|+|++|+| .|.+|..+..|++.+ . +.++++++|+. |.+.+ +.+...+.+.+...+ +.+--..
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~---~-----l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~~---~~~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY---D-----FSGKTVIPFATSGGSGI---GNAEKELKKSYPDAN---WKEGRLL 142 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc---C-----CCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcCc---cccCeee
Confidence 9999999999 588888888787643 2 78999999997 55554 445555555543322 2221111
Q ss_pred cCCCCchHHHHHHHHHH
Q 005496 219 DDDQCIEDDFTAWRELV 235 (694)
Q Consensus 219 D~~~~~e~~~~~W~~~l 235 (694)
+ .+..+.++++|.+++
T Consensus 143 ~-~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 N-GGASKEEIKEWINKL 158 (160)
T ss_pred c-CCCcHHHHHHHHHHc
Confidence 1 223467899998764
No 112
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=99.03 E-value=9.7e-10 Score=100.57 Aligned_cols=95 Identities=24% Similarity=0.408 Sum_probs=64.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCC----CChhHHHHHH
Q 005496 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGE----PTDNAARFYK 163 (694)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~----~p~na~~F~~ 163 (694)
|+|.|.||||++|+++|...+. ..-+.+...+. + +.-....|+++||||.|+ .|....+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~-------~~~i~~~~~~~-~------~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAP-------AIRIPIREISP-D------LEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--S-------EEEE-SSCTTS-T------S--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccch-------hcccccccccc-c------ccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 7999999999999998876442 11222222211 1 344668999999999999 9999998888
Q ss_pred HHhccCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHH
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEEL 204 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L 204 (694)
+-.+. ..-.+|+|.||++| ..||.+|+.+.+++
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 65542 46788999999999 89999999999875
No 113
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.02 E-value=3.3e-09 Score=100.74 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=69.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCC--CcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 005496 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (694)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~--d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (694)
+|+|+|.||||+++|+.|++.|.+. +..+|+.+. +..+ +.+++.|||++|+| .|.++..+.+|++.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~-----~~~v~~~~~~~~~~~------~~~yD~vi~gspiy-~g~~~~~~~~fi~~ 68 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEE-----GELVDLEKVEEDEPD------LSDYDAVIFGSPIY-AGRIPGEMREFIKK 68 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhh-----ccEEEHHhhhhcccc------cccCCEEEEEEEEE-CCcCCHHHHHHHHH
Confidence 4899999999999999999999876 445566554 2333 78899999999999 79999999999988
Q ss_pred HhccCCCCCCCCCceEEEEEecCcc
Q 005496 165 FTEGNDRGPWLQQLKFGVFGLGNRQ 189 (694)
Q Consensus 165 L~~~~~~~~~l~~~~~avFGlGds~ 189 (694)
+... |+++++++|..|-..
T Consensus 69 ~~~~------l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 69 NKDN------LKNKKVALFSVGGSS 87 (143)
T ss_pred HHHH------HcCCcEEEEEEeCCC
Confidence 7553 788999999986543
No 114
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.94 E-value=4.8e-09 Score=95.82 Aligned_cols=124 Identities=19% Similarity=0.338 Sum_probs=85.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCC----CCChhHHH
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDG----EPTDNAAR 160 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G----~~p~na~~ 160 (694)
.+.|+|.|.||||.+|+++|. +. .+.+.+....+ . +.-.+..|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~----~------~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREED----P------IEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CC----ceecccccccC----C------ccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 478999999999999999987 11 22233332222 1 33455799999999999 88988776
Q ss_pred HHHHHhccCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHcCCeEeecceeecCCCCch---HHHHHHHHHHH
Q 005496 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIE---DDFTAWRELVW 236 (694)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e---~~~~~W~~~l~ 236 (694)
|+. ... ...+.-+|.|.||+.| ..||.+|+.+.+++ |.-.++..- -.+.. ..+.+|..++|
T Consensus 66 FLn---~~~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FE----L~GT~~Dv~~v~~~v~~~~ 130 (141)
T COG1780 66 FLN---NEH-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFE----LLGTAEDVAAVRKGVTEFW 130 (141)
T ss_pred Hhc---ccc-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEe----ccCCHHHHHHHHHHHHHHH
Confidence 654 322 3567889999999999 89999999998864 444333321 12333 45667887777
Q ss_pred HHH
Q 005496 237 PEL 239 (694)
Q Consensus 237 ~~L 239 (694)
+..
T Consensus 131 ~~~ 133 (141)
T COG1780 131 KRA 133 (141)
T ss_pred HhC
Confidence 653
No 115
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.82 E-value=6e-08 Score=92.66 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=99.5
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC---------------cCchhHHhhhccCCeEEEEE
Q 005496 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYA---------------MDDEQYEEKLKKETLAFFMV 146 (694)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d---------------~~~~~~~~~l~~~~~vif~~ 146 (694)
|||+|++||.. |||+.+|+.+++.+.+. |++++++++.+++ .+-.++.+++.+.+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~--g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA--GAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT--TEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc--CCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 99999999999999988 8999999999861 11133556788899999999
Q ss_pred ecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 147 sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
|+| .|.+|..++.|++++.. .....+++|.+++++.|.+.... ..+...+...|..+|+..+..
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCC
Confidence 999 99999999999999972 11123899999999987665432 346678888888999987754
No 116
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.67 E-value=1.5e-07 Score=90.85 Aligned_cols=97 Identities=27% Similarity=0.359 Sum_probs=72.4
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHh
Q 005496 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (694)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~ 166 (694)
+|+|.|.||||+++|+.|++.|.. ..++++++.... +.++++|++++.+| .|.+++.+++|++.
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~~-------~~~yD~i~lG~w~d-~G~~d~~~~~fl~~-- 64 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPED-------LEDYDLIFLGFWID-KGTPDKDMKEFLKK-- 64 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEeccccccC-------CCCCCEEEEEcCcc-CCCCCHHHHHHHHH--
Confidence 489999999999999999998852 356677766432 56789999999999 79999998877665
Q ss_pred ccCCCCCCCCCceEEEEEecCc-ch-hHHHHHHHHHHHHHHHc
Q 005496 167 EGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQ 207 (694)
Q Consensus 167 ~~~~~~~~l~~~~~avFGlGds-~Y-~~f~~~~k~ld~~L~~l 207 (694)
|+|+++++||..-. .. +|+..+.+++...+.+-
T Consensus 65 --------l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~ 99 (160)
T PF12641_consen 65 --------LKGKKVALFGTAGAGPDSEYAKKILKNVEALLPKG 99 (160)
T ss_pred --------ccCCeEEEEEecCCCCchHHHHHHHHHHHHhhccC
Confidence 45789999996211 11 45666666666666544
No 117
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.62 E-value=1e-07 Score=91.41 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=50.6
Q ss_pred CeEEEecCccchhhHHHHHHHHHHhh-cCCCCCCEEEEEeecCCCcccccHHHHHhhHHcC--CeeEEEEEEecCCC
Q 005496 545 PIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG--VISELILAFSREGS 618 (694)
Q Consensus 545 piImIa~GTGIAPfrsflq~r~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g--~~~~l~~afSR~~~ 618 (694)
.++|||+|+||+|+.+++++...... ......++.|+|-+|+.+.=..|.++|+++.... ...++.+.++++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 48999999999999999999987654 2235688999999999984447786666554431 34567777777543
No 118
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.61 E-value=8.4e-08 Score=89.95 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=88.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
|+++|+|+|.+|+|.++|+.|+..|.+. |..|++.|+.....-+ +.+++.||++.|.| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~--g~qvdi~dl~~~~~~~------l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRES--GIQVDIQDLHAVEEPA------LEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhc--CCeeeeeehhhhhccC------hhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 5799999999999999999999999998 8999999998776545 78899999999999 9999899888887
Q ss_pred HHhccCCCCCCCCCceEEEEEecCcchhHH---HHHHHHHHHHHHHcCCe
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHF---NKIGIVLDEELCKQGGA 210 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y~~f---~~~~k~ld~~L~~lGa~ 210 (694)
.-.+. |.++..|+|.++-. |..+ -..-..+++.|.+--.+
T Consensus 72 k~~e~------L~~kP~A~f~vnl~-a~k~k~~~e~~~yv~kfl~~~~Wq 114 (175)
T COG4635 72 KHAEA------LSTKPSAFFSVNLT-ARKEKRTPETNSYVRKFLMKSPWQ 114 (175)
T ss_pred HHHHH------HhcCCceEEEeehh-hcccccCchHHHHHHHHHhcCCCc
Confidence 66554 88899999987532 3222 33344566666665444
No 119
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.41 E-value=1.7e-06 Score=83.36 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=74.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc---C------c--hh------------HHhhhccCCe
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---D------D--EQ------------YEEKLKKETL 141 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~---~------~--~~------------~~~~l~~~~~ 141 (694)
|++|+|-|.||||+++|+.|++.+... -.++.....|.. + . .+ ....+.+++.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999866321 122333333333 0 0 00 1123567899
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEe-cCcchhHHHHHHHHHHHHHHHcCCeEeecceeecC
Q 005496 142 AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (694)
Q Consensus 142 vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~ 220 (694)
|+++.|+| .|.+|..+..|++ +.. ++|++++.|-. |.+. ++.+.+.+.+.+. +++...... ...
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~---~~~-----~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~i~~g~~-~~~ 141 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLE---QYD-----FSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GATILEGLA-INR 141 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHH---CTT-----TTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSEE---EE----
T ss_pred EEEechHH-cCCCCHHHHHHHH---hcC-----CCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCEeecCeE-EeC
Confidence 99999999 8999988887765 332 88999999975 2222 3444555554432 344332222 211
Q ss_pred CCCchHHHHHHHHHH
Q 005496 221 DQCIEDDFTAWRELV 235 (694)
Q Consensus 221 ~~~~e~~~~~W~~~l 235 (694)
+.-.++++.+|.++|
T Consensus 142 ~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 142 GSVSEEEIKEWLKKI 156 (156)
T ss_dssp S---HHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhC
Confidence 112678999998764
No 120
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.37 E-value=1.4e-05 Score=79.78 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=97.0
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc-----------hhHHhhhccCCeEEEEEecCC
Q 005496 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYG 150 (694)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~-----------~~~~~~l~~~~~vif~~sTyG 150 (694)
|+|+++.||-. ++|.++++.+.+.+.+. |++++++|+.+++..+ ..+.+.+.+.+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~--g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGL--GVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhC--CCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 57999999984 88999999999999887 8899999887765422 12345567889999999999
Q ss_pred CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEe
Q 005496 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (694)
Q Consensus 151 ~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (694)
.|..|.-.+.|++|+... .+.+|.+++++.| ....+.-..--.+...|..+|+..+
T Consensus 78 ~~s~pg~LKn~iD~l~~~-----~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPER-----ALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCChh-----hhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 999999999999999542 3899999999998 5556555555677788889999864
No 121
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.29 E-value=2.1e-06 Score=102.47 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=73.9
Q ss_pred HHHHHHhCCCC--CCChHHHHHHhcCC-----C-CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhc
Q 005496 444 LLEVMAEFPSA--TPPIGVFFAAVAPH-----L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA 515 (694)
Q Consensus 444 l~dvl~~fps~--~~p~~~ll~~~~p~-----l-~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l 515 (694)
+..+..+.|.. ..-+|||+.+..+. + .||++||++.... .+.++|+++++ |..|.+|+++
T Consensus 805 i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l 872 (1028)
T PRK06567 805 TFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTL 872 (1028)
T ss_pred EEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcC
Confidence 34444445532 34689999987431 2 6789999998754 57899999876 9999999999
Q ss_pred CCCCCCCCccEEEEEeeCC-CcccCCCCCCCeEEEecCccchh
Q 005496 516 IPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAP 557 (694)
Q Consensus 516 ~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAP 557 (694)
++| +.+.|.+|.| .|.++. ...+++||+|+|+||
T Consensus 873 ~~G------d~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 873 SEN------EKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred CCC------CEEEEEcccCCCCCCCC--CCeEEEEEccccHHH
Confidence 999 7899999999 788764 357999999999998
No 122
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=98.20 E-value=3.9e-05 Score=75.10 Aligned_cols=119 Identities=12% Similarity=0.196 Sum_probs=92.4
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc-----------hhHHhhhccCCeEEEEEecCCC
Q 005496 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYGD 151 (694)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~-----------~~~~~~l~~~~~vif~~sTyG~ 151 (694)
+|+++.||- .++|.++++.+.+.+.+. +..++++|+.++...+ ..+.+.+...+.+||++|.| .
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~--~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQ--GVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHC--CCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 488999995 789999999999999877 7778888877654321 22345566789999999999 9
Q ss_pred CCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEe
Q 005496 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (694)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (694)
|.+|...+.|++|+... .+.+|.+++++.| ..+.++...-..+...|..+|+..+
T Consensus 78 ~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~ 132 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHI 132 (171)
T ss_pred CCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccc
Confidence 99999999999998532 2889999988877 4555555544568888999999644
No 123
>PRK00170 azoreductase; Reviewed
Probab=98.13 E-value=0.00011 Score=73.52 Aligned_cols=157 Identities=11% Similarity=-0.011 Sum_probs=105.8
Q ss_pred CCeEEEEEECC--C-chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcC---------------------------chhH
Q 005496 83 KTKVTVFYGTQ--T-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------------------DEQY 132 (694)
Q Consensus 83 ~~~v~I~YgSq--t-Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~---------------------------~~~~ 132 (694)
|++|+|++||- . |+|..+|+.+.+.+++.+++.+++++||.+.+.. -.++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999988766788999988655421 0123
Q ss_pred HhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccC--------CCCCCCCCceEEEEEecCcch--hHHHHHHHHHHH
Q 005496 133 EEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (694)
Q Consensus 133 ~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~--------~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~ 202 (694)
.+++...+.+||++|.| .+.+|.-.+.|++++.... .....++++++.++......+ ..+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 45577889999999999 8889999999999975311 011347899999888633222 222445566777
Q ss_pred HHHHcCCeEeecceeecCCCCchHHHHHHHHHHHHHHHh
Q 005496 203 ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (694)
Q Consensus 203 ~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~L~~ 241 (694)
.|.-+|++.+.......-+ ...+.-.+|.++....+.+
T Consensus 160 ~~~~~G~~~~~~~~~~g~~-~~~~~~~~~~~~a~~~~~~ 197 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHN-YGPEKAAKIISAAKAAADE 197 (201)
T ss_pred HHHhcCCCceEEEEEeccc-CCchHHHHHHHHHHHHHHH
Confidence 7888998865444322211 1223345566555444443
No 124
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=2.1e-05 Score=92.26 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=87.0
Q ss_pred ChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhh-cCC-C-CCCCC----ccE
Q 005496 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIP-L-EGNGD----CSW 526 (694)
Q Consensus 457 p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~-l~~-g-~~~~~----~~~ 526 (694)
.+||++-+-.|. +|-.||||+|+| +++.+.+.|+.. |--|+-|.+ +.. . +.+.+ .-+
T Consensus 383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~ 449 (646)
T KOG0039|consen 383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPK 449 (646)
T ss_pred CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCce
Confidence 456655443254 588999999999 468999999854 666666665 221 1 11111 247
Q ss_pred EEEEeeCCCcccCCCCCCCeEEEecCccchhhHHHHHHHHHHhhcCC------------CCCCEEEEEeecCCCcccccH
Q 005496 527 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA------------QLGPALLFFGCRNRRMDFIYE 594 (694)
Q Consensus 527 v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~------------~~~~~~Lf~G~R~~~~D~ly~ 594 (694)
+.|.+|.|.=..+-..-.-++|||+|.|++||.+++++.+...+.+. ..+++..+|-||....=-.+.
T Consensus 450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~ 529 (646)
T KOG0039|consen 450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFK 529 (646)
T ss_pred EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHH
Confidence 88999988322111223457999999999999999999987544332 346778888899887333456
Q ss_pred HHHHhhH
Q 005496 595 DELNNFE 601 (694)
Q Consensus 595 del~~~~ 601 (694)
+.+.+..
T Consensus 530 ~~l~~v~ 536 (646)
T KOG0039|consen 530 GLLTEVE 536 (646)
T ss_pred HHHHHHH
Confidence 6555554
No 125
>PRK09739 hypothetical protein; Provisional
Probab=98.04 E-value=0.00016 Score=72.60 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=106.0
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc---------------------CchhHHhhhccC
Q 005496 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------------DDEQYEEKLKKE 139 (694)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~---------------------~~~~~~~~l~~~ 139 (694)
+++|+|++||- .|+|..+++.+.+++.+. |.+++++||.+.+. +-..+.+++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~--g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQER--GHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 67899999987 577899999999999987 78888888765421 013355667889
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhccCC---CCCCCCCceEEEEEecCcchhHHHH------HHHHHH-HHHHHcCC
Q 005496 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGND---RGPWLQQLKFGVFGLGNRQYEHFNK------IGIVLD-EELCKQGG 209 (694)
Q Consensus 140 ~~vif~~sTyG~G~~p~na~~F~~~L~~~~~---~~~~l~~~~~avFGlGds~Y~~f~~------~~k~ld-~~L~~lGa 209 (694)
+.+||++|.| .+.+|.-.+.|++.+..... .+..|.+++..++......|.+|.. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 88889999999988743110 1134788888887764445544422 223343 33445787
Q ss_pred eEeecceeecCC-----CCchHHHHHHHHHHHHHHHhh
Q 005496 210 ARLVPLGLGDDD-----QCIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 210 ~~i~~~g~gD~~-----~~~e~~~~~W~~~l~~~L~~~ 242 (694)
+.+.....+.-. +...+..++|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 654333333222 345677899998877665543
No 126
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=98.04 E-value=9.6e-05 Score=72.52 Aligned_cols=120 Identities=19% Similarity=0.173 Sum_probs=89.6
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC------------cCc-hhHHhhhccCCeEEEEEecC
Q 005496 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA------------MDD-EQYEEKLKKETLAFFMVATY 149 (694)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d------------~~~-~~~~~~l~~~~~vif~~sTy 149 (694)
||+++.||. .|++..+|+.+.+.+.+.. |++++++|+.+++ .++ ..+.+.+.+.+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~-g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARL-GISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhc-CCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999998 5999999999999886432 5778888876652 000 23556677889999999999
Q ss_pred CCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEe
Q 005496 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (694)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (694)
+|.+|...+.|++|+... .+.+|++++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~~-----~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDPN-----ALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCHh-----HhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 999999999999998532 28899999999875443 222233456777778887655
No 127
>PRK01355 azoreductase; Reviewed
Probab=98.03 E-value=0.00023 Score=71.46 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=108.7
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcC----------------c-hhHHhhhccCCe
Q 005496 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------D-EQYEEKLKKETL 141 (694)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~----------------~-~~~~~~l~~~~~ 141 (694)
|++|+|+.||-. |++..+|+.+.+++++..++.+++++||.+.+.. + ..+.+++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987534678888988765441 1 224466778899
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhccC--------CC---CCCCCCceEEEEEecCcch--hHHHHHHHHHHHHHHHcC
Q 005496 142 AFFMVATYGDGEPTDNAARFYKWFTEGN--------DR---GPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQG 208 (694)
Q Consensus 142 vif~~sTyG~G~~p~na~~F~~~L~~~~--------~~---~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lG 208 (694)
+||++|.| .+.+|.-.+.|++++.... .. ...++++++.++....... ..+......+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 8999999999999975321 01 1347888887766543221 123455677788888899
Q ss_pred CeEeecceeecCCC-Cc-hHHHHHHHHHHHHHHHh
Q 005496 209 GARLVPLGLGDDDQ-CI-EDDFTAWRELVWPELDQ 241 (694)
Q Consensus 209 a~~i~~~g~gD~~~-~~-e~~~~~W~~~l~~~L~~ 241 (694)
.+.+.......-.. .. .+....|.+.-.+++.+
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 98766555433222 11 12366777665555544
No 128
>PRK06934 flavodoxin; Provisional
Probab=98.03 E-value=5.7e-05 Score=76.58 Aligned_cols=127 Identities=11% Similarity=0.101 Sum_probs=75.2
Q ss_pred ECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcC----------------chh---HHhhhccCCeEEEEEecCCC
Q 005496 91 GTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------DEQ---YEEKLKKETLAFFMVATYGD 151 (694)
Q Consensus 91 gSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~----------------~~~---~~~~l~~~~~vif~~sTyG~ 151 (694)
|+.||||+++|+.|++.+... - .++...+.|..+ ... ....+..++.|+++.|.| -
T Consensus 67 ~~~~GnTk~vAe~Ia~~~gaD--l--~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIW-w 141 (221)
T PRK06934 67 GEVLGSTQYVAQIIQEETGGD--L--FRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIW-W 141 (221)
T ss_pred CCCCCHHHHHHHHHHHHHCCC--E--EEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchh-h
Confidence 334499999999999987432 1 222222222210 011 224577899999999999 8
Q ss_pred CCCChhHHHHHHHHhccCCCCCCCCCceEEEEEe-cCcchhHHHHHHHHHHHHHHHcCCeEeeccee--ecCCC--CchH
Q 005496 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGL--GDDDQ--CIED 226 (694)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~--gD~~~--~~e~ 226 (694)
|.+|.-+..|++.. . ++|++++.|.. |.+ .+....+.+.+.+. +++.+.+-.. +++.. ..++
T Consensus 142 g~~P~~V~tFLe~~---d-----~~GK~I~pF~T~ggs---g~g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~~~~~~~~ 208 (221)
T PRK06934 142 YKMPMVMYSFFEQH---D-----FSGKTLIPFTTHGGS---RFSDSLREIKRLQP--NAQLVTQGLAISRNDVTDDDTPK 208 (221)
T ss_pred ccccHHHHHHHHhc---C-----CCCCEEEEEEecCCC---CccchHHHHHHHcC--CcceeccceeeecCcccccchHH
Confidence 88888888776433 2 88999999985 222 23334444444432 3422322111 22211 2578
Q ss_pred HHHHHHHHH
Q 005496 227 DFTAWRELV 235 (694)
Q Consensus 227 ~~~~W~~~l 235 (694)
++..|.+++
T Consensus 209 ~I~~Wl~~l 217 (221)
T PRK06934 209 EIINWLNTL 217 (221)
T ss_pred HHHHHHHHc
Confidence 899998753
No 129
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.94 E-value=2.4e-06 Score=75.52 Aligned_cols=67 Identities=22% Similarity=0.172 Sum_probs=54.7
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEe
Q 005496 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (694)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~ 531 (694)
...+|||+.+.++. ...|+|||+|.|.. .+.++|+|+.. ..|..|+||+++++| +.|.+.+
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~---------~~G~~S~~L~~l~~G------d~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRY---------PNGRVSRYLHQLKPG------DEVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEEC---------TTSHHHHHHHTSCTT------SEEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEec---------cCCHHHHHHHhCCCC------CEEEEEE
Confidence 34789998887562 24699999999964 67899999864 269999999999999 8999999
Q ss_pred eCCCcc
Q 005496 532 RPSNFK 537 (694)
Q Consensus 532 ~~g~F~ 537 (694)
|.|+|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 999986
No 130
>PRK13556 azoreductase; Provisional
Probab=97.88 E-value=0.0007 Score=68.39 Aligned_cols=157 Identities=9% Similarity=0.060 Sum_probs=106.8
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc-----------------------------Cc
Q 005496 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-----------------------------DD 129 (694)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~-----------------------------~~ 129 (694)
|++|+|+.+|-- +++..+++.+.+.+.+.+++.+++++||.+.+. .-
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998765578898888863211 00
Q ss_pred hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccC------CC--CCCCCCceEEEEEecCcch-----hHHHHH
Q 005496 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------DR--GPWLQQLKFGVFGLGNRQY-----EHFNKI 196 (694)
Q Consensus 130 ~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~------~~--~~~l~~~~~avFGlGds~Y-----~~f~~~ 196 (694)
+.+..++...+.+||++|-| ++.+|.-.+.+++++.... .. ...+.++++.++...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12345577889999999999 8889999999999987531 11 1358899999987733345 334445
Q ss_pred HHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHHHHHHHh
Q 005496 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (694)
Q Consensus 197 ~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~L~~ 241 (694)
...+...|.-+|++.+.. ...+......+..+.+.++....+.+
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~~ 203 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAAK 203 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHHH
Confidence 567888888899876533 33322212334455665554444443
No 131
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.87 E-value=0.00046 Score=69.07 Aligned_cols=152 Identities=17% Similarity=0.098 Sum_probs=108.8
Q ss_pred CeEEEEEECCCc---hHHHHHHHHHHHHHhhhCC-CeeEEEcCCCC----------------------CcCchhHHhhhc
Q 005496 84 TKVTVFYGTQTG---TAEGFAKALAEEIKARYEK-AAVKVVDLDDY----------------------AMDDEQYEEKLK 137 (694)
Q Consensus 84 ~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g-~~~~v~dl~~~----------------------d~~~~~~~~~l~ 137 (694)
|+|+|+++|-.+ ++..+++.+.+.+.+. + .++.+.||.+. +...+. ++++.
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~--~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~ 77 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEA--GPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELL 77 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHH--TTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHc--CCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHH
Confidence 689999999987 5899999999999998 6 88999999874 111112 36678
Q ss_pred cCCeEEEEEecCCCCCCChhHHHHHHHHhc--cCC--------CCCCCCCceEEEEEe-cCcch--h-------HHHHHH
Q 005496 138 KETLAFFMVATYGDGEPTDNAARFYKWFTE--GND--------RGPWLQQLKFGVFGL-GNRQY--E-------HFNKIG 197 (694)
Q Consensus 138 ~~~~vif~~sTyG~G~~p~na~~F~~~L~~--~~~--------~~~~l~~~~~avFGl-Gds~Y--~-------~f~~~~ 197 (694)
..+.+||+.|.| .+.+|.-.+.|++.+-. ... ....|+|+++.++-. |...+ . .+..+.
T Consensus 78 ~AD~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~ 156 (199)
T PF02525_consen 78 WADHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLL 156 (199)
T ss_dssp HSSEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHH
T ss_pred HcCcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhH
Confidence 899999999999 88889999999998732 111 124688999887764 54422 2 345566
Q ss_pred HHHHHHHHHcCCeEeecceeecCCC-CchHHHHHHHHHHHHHH
Q 005496 198 IVLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPEL 239 (694)
Q Consensus 198 k~ld~~L~~lGa~~i~~~g~gD~~~-~~e~~~~~W~~~l~~~L 239 (694)
.-+...+.-+|++.+.....++-.. ..++..++|++++-+.|
T Consensus 157 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 157 PYLRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 6678888999999987766555332 23788889988765543
No 132
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.71 E-value=0.00036 Score=70.46 Aligned_cols=123 Identities=17% Similarity=0.098 Sum_probs=90.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc-------------------Cc-hhHHhhhccCCeEEE
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-------------------DD-EQYEEKLKKETLAFF 144 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~-------------------~~-~~~~~~l~~~~~vif 144 (694)
.|.+.|-| +|||+.+++.+++.+++. |++++++.+.+.+. ++ .++.+++.+.+.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~--G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEA--GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHc--CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45666667 899999999999999998 89999887776511 11 235555778899999
Q ss_pred EEecCCCCCCChhHHHHHHH-HhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEe
Q 005496 145 MVATYGDGEPTDNAARFYKW-FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (694)
Q Consensus 145 ~~sTyG~G~~p~na~~F~~~-L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (694)
++||| .|..+..++.|++. ....... ..+.++..++|..+.+.-.........+...+...|...+
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~~~-~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLWAP-GALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhccc-chhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEe
Confidence 99999 99999999999998 4332211 3488888888887665543222455667777777777554
No 133
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=97.33 E-value=0.012 Score=59.82 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=91.1
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc---------hhHHhhhccCCeEEEEEecCCC
Q 005496 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD---------EQYEEKLKKETLAFFMVATYGD 151 (694)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~---------~~~~~~l~~~~~vif~~sTyG~ 151 (694)
+++|+++.||.- -++..+|+.+++.+.+. |+.++++|+.+++.-+ ..+...+...+.+||++|-| +
T Consensus 26 ~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~--g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n 102 (219)
T TIGR02690 26 IPRILLLYGSLRERSYSRLLAEEAARLLGCE--GRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-H 102 (219)
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHhhc--CCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-c
Confidence 568999999874 34578999999988877 7889999876544211 11234455789999999999 8
Q ss_pred CCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
|..|...+.+++|+.....+...+.+|.++|.|.+-.. . --.+...+...|..+|+..+-
T Consensus 103 ~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~-~-g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 103 GAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS-Q-SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred cCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH-h-HHHHHHHHHHHHHHCCCcccc
Confidence 88899999999999764211124889999999853111 1 234567888889999987553
No 134
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=96.92 E-value=0.064 Score=53.14 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=97.8
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC----cCchhHHhhhccCCeEEEEEecCCCCCCCh
Q 005496 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA----MDDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (694)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d----~~~~~~~~~l~~~~~vif~~sTyG~G~~p~ 156 (694)
+.+++++|++++-.+..-. +++...++.+. ...+.+.||...- .+-......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~-~n~~l~~~~~~--~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSV-ANRVLLKPAQQ--LEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCH-HHHHHHHHHHc--CCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 4568999999998865322 33333333333 3457778876432 22222345577899999999999 777788
Q ss_pred hHHHHHHHHhccC----CCCCCCCCceEEEEEe-cCcc--hh--HHHH-----HHHHHHHHHHHcCCeEeecceeecCCC
Q 005496 157 NAARFYKWFTEGN----DRGPWLQQLKFGVFGL-GNRQ--YE--HFNK-----IGIVLDEELCKQGGARLVPLGLGDDDQ 222 (694)
Q Consensus 157 na~~F~~~L~~~~----~~~~~l~~~~~avFGl-Gds~--Y~--~f~~-----~~k~ld~~L~~lGa~~i~~~g~gD~~~ 222 (694)
-.+.|++..-... ..+..|+|+++.+.-. |... |. .++. .-.-+...+.-+|.+.+.+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 8888887654311 1124589999888644 4433 42 1221 222233444567998887776666555
Q ss_pred CchHHHHHHHHHHHHHHHhh
Q 005496 223 CIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 223 ~~e~~~~~W~~~l~~~L~~~ 242 (694)
..+++.++|.++....|...
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 159 QSPEELASHARAYGDWLANP 178 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 56777888887776666553
No 135
>PRK13555 azoreductase; Provisional
Probab=96.91 E-value=0.066 Score=54.18 Aligned_cols=129 Identities=11% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcC---------------------c--------
Q 005496 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------------D-------- 129 (694)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~---------------------~-------- 129 (694)
|++++++++|=. -.+..+|+.+.+++++..++..+.+.||-+.+.. +
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 568999999943 5678888888888887755578888887653210 0
Q ss_pred hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccC------C--CCCCCCCceEEEEEecCcchh-----HHHHH
Q 005496 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------D--RGPWLQQLKFGVFGLGNRQYE-----HFNKI 196 (694)
Q Consensus 130 ~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~------~--~~~~l~~~~~avFGlGds~Y~-----~f~~~ 196 (694)
..+..++...+.+||++|-| ++.+|.-.+.|++++.... . ....|+|++..|++.....|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 12345577789999999999 8888999999999876421 1 124589999999987333452 12223
Q ss_pred HHHHHHHHHHcCCeEe
Q 005496 197 GIVLDEELCKQGGARL 212 (694)
Q Consensus 197 ~k~ld~~L~~lGa~~i 212 (694)
...+...|.-+|.+.+
T Consensus 160 ~~yl~~il~~~Gi~~v 175 (208)
T PRK13555 160 VNYVTTVLGFWGITNP 175 (208)
T ss_pred HHHHHHHHHhcCCCce
Confidence 3667777887898643
No 136
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=96.90 E-value=0.01 Score=56.51 Aligned_cols=128 Identities=17% Similarity=0.124 Sum_probs=86.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHH-----------------hhhccCCeEEEEE
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYE-----------------EKLKKETLAFFMV 146 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~-----------------~~l~~~~~vif~~ 146 (694)
.+|.|+|-|.+|.-+.+|++..+.+... +-+..++.+.+.-.++ ++ +.|.+++.++|+.
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a--~geA~i~qVpEtl~~e--vl~km~a~pkp~d~piit~~~L~e~D~flFG~ 77 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESA--GGEATIYQVPETLSEE--VLEKMKAPPKPSDYPIITPETLTEYDGFLFGF 77 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhcc--CCeeEEEEcccccCHH--HHHHhcCCCCCccCCccCHHHHhhccceeecc
Confidence 5799999999999999999999998766 3367776555432221 22 2366788999999
Q ss_pred ecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceee
Q 005496 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (694)
Q Consensus 147 sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (694)
||- .|.+|..++.||+.-..+ -....|.|+..++|=++.+.=.-=-..+..--..|.-+|. .++|+|.-
T Consensus 78 PTR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGm-ifVPlGYk 146 (203)
T KOG3135|consen 78 PTR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGM-IFVPLGYK 146 (203)
T ss_pred ccc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcce-EEEecccc
Confidence 999 999999999999852211 1112389999999977553321111122333344555665 56687754
No 137
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.11 Score=54.14 Aligned_cols=166 Identities=20% Similarity=0.291 Sum_probs=103.2
Q ss_pred CCCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCcccCCCCCCCe
Q 005496 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (694)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~pi 546 (694)
.+..+|.|+|.+-... .+++.|-+.+.. ..|.+|.|-.+.++| +.+.|.+|.|.+..+.. ..-+
T Consensus 83 ~r~~~R~YTiR~~d~~-~~e~~vDfVlH~--------~~gpas~WA~~a~~G------D~l~i~GP~g~~~p~~~-~~~~ 146 (265)
T COG2375 83 QRPPQRTYTIRAVDAA-AGELDVDFVLHG--------EGGPASRWARTAQPG------DTLTIMGPRGSLVPPEA-ADWY 146 (265)
T ss_pred cCCCcccceeeeeccc-ccEEEEEEEEcC--------CCCcchhhHhhCCCC------CEEEEeCCCCCCCCCCC-cceE
Confidence 3457899999866422 345555444321 269999999999999 89999999998776643 4579
Q ss_pred EEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccch
Q 005496 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHK 626 (694)
Q Consensus 547 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~ 626 (694)
+|||==|++--+.++|++.- ...+...|.-..... |. .++. ....+ ++... .|.+.. +.| .
T Consensus 147 lLigDetAlPAIa~iLE~lp-------~~~~~~a~lev~d~a-d~---~~l~---~~~~l-~~~Wl-~r~~~~--~~~-l 207 (265)
T COG2375 147 LLIGDETALPAIARILETLP-------ADTPAEAFLEVDDAA-DR---DELP---SPDDL-ELEWL-ARDDAP--TEQ-L 207 (265)
T ss_pred EEeccccchHHHHHHHHhCC-------CCCceEEEEEeCChH-Hh---hccC---CCCce-eEEEe-cCCCcc--chH-H
Confidence 99999999988888888753 233446677777666 44 2222 11222 23333 343321 111 1
Q ss_pred hHHhHHHHHhc-ccC-CcEEEEeCCccchHHHHHHHHHHHHHHccCCCHHH
Q 005496 627 MMDKAAQLWSL-LSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK 675 (694)
Q Consensus 627 l~~~~~~l~~l-l~~-~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~ 675 (694)
+.+. +.+. +.+ +.++||.|- ..|++.+++.| .++.|++...
T Consensus 208 l~~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L----~~e~g~dk~~ 250 (265)
T COG2375 208 LAAA---LAQAALPAGDYYVWIAGE-ASAVKAIRKFL----RNERGFDKSR 250 (265)
T ss_pred HHHH---HhcccCCCCceEEEEecc-HHHHHHHHHHH----hhhcCCCHHH
Confidence 2211 2221 222 379999999 66777666554 4566776544
No 138
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=95.63 E-value=0.12 Score=51.32 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=84.9
Q ss_pred CeEEEEEECCCc--hHHHHHHHHHHHHHhhhCC-CeeEEEcCC----CCCcC-------chhHHhhhccCCeEEEEEecC
Q 005496 84 TKVTVFYGTQTG--TAEGFAKALAEEIKARYEK-AAVKVVDLD----DYAMD-------DEQYEEKLKKETLAFFMVATY 149 (694)
Q Consensus 84 ~~v~I~YgSqtG--tte~~A~~la~~l~~~~~g-~~~~v~dl~----~~d~~-------~~~~~~~l~~~~~vif~~sTy 149 (694)
++|++++||..= .+..+|+.+++.+... + ..+...+++ +.+.+ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~--~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAG--GEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhccc--CceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc
Confidence 579999999754 4678888888888765 3 333332221 11111 112334566789999999999
Q ss_pred CCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
+|..|.-.+..++|+.... +.++.+++++.|.... +.-.+...+...|..+|+..+..
T Consensus 79 -n~s~pg~lKnaiD~l~~~~-----~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 79 -NGSYPGALKNAIDWLSREA-----LGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred -CCCCCHHHHHHHHhCCHhH-----hCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 9999999999999997652 8899999988644442 33345677888888899876643
No 139
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=94.91 E-value=0.66 Score=45.71 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=91.3
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc----CchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~----~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
|+|+++.-......+-+.|.+.+... -.+++.||.+..+ +-......|...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 78999988876666777777777643 2377777654322 1112345577899999999999 77788888888
Q ss_pred HHHHhcc----CCCCCCCCCceEE-EEEecCcc--hh-----HHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHH
Q 005496 162 YKWFTEG----NDRGPWLQQLKFG-VFGLGNRQ--YE-----HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 229 (694)
Q Consensus 162 ~~~L~~~----~~~~~~l~~~~~a-vFGlGds~--Y~-----~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~ 229 (694)
++..-.. ...+..|+|+++. ++-.|... |. .+.....-+...+.-+|++-+.+..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 8765321 1112458899874 45556542 31 12223444555666789987766554433223345555
Q ss_pred HHHHHHHHHHHh
Q 005496 230 AWRELVWPELDQ 241 (694)
Q Consensus 230 ~W~~~l~~~L~~ 241 (694)
+..++..+.|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555544444443
No 140
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=91.52 E-value=4.2 Score=40.54 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=94.9
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhhhCCCeeEEE-----------cCCC--CCcCchhHHhhhccCCeEEEEEecC
Q 005496 84 TKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVV-----------DLDD--YAMDDEQYEEKLKKETLAFFMVATY 149 (694)
Q Consensus 84 ~~v~I~YgSqt-Gtte~~A~~la~~l~~~~~g~~~~v~-----------dl~~--~d~~~~~~~~~l~~~~~vif~~sTy 149 (694)
|+|+|+|+--- .-+-..++...+.+.+. ++++... ...| ...+-..-.+.+...+.+||.-|-|
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~--~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw 78 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEA--GHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW 78 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHc--chHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch
Confidence 57999999885 33334444444444444 3332211 1122 2222222345577889999999999
Q ss_pred CCCCCChhHHHHHHHHhc-c-C--CCC----CCCCCceEEEEEecCcchhHHHHHHH---------HHHHHHHHcCCeEe
Q 005496 150 GDGEPTDNAARFYKWFTE-G-N--DRG----PWLQQLKFGVFGLGNRQYEHFNKIGI---------VLDEELCKQGGARL 212 (694)
Q Consensus 150 G~G~~p~na~~F~~~L~~-~-~--~~~----~~l~~~~~avFGlGds~Y~~f~~~~k---------~ld~~L~~lGa~~i 212 (694)
=...|.-.+.+++..-. . + ..+ ..|+|+++-++..-+..-+.|...+. .+.-.+.-.|...+
T Consensus 79 -W~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 157 (189)
T COG2249 79 -WYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWL 157 (189)
T ss_pred -hccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccc
Confidence 77778888877776433 1 1 111 56999999888875444344433333 23345566787777
Q ss_pred ecceeecCCCCchHHHHHHHHHHHHHHHhh
Q 005496 213 VPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 213 ~~~g~gD~~~~~e~~~~~W~~~l~~~L~~~ 242 (694)
-+...+......++...+|.+++-..|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 158 PPFTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred cceeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 666666555567899999998887777653
No 141
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.05 E-value=7.4 Score=36.66 Aligned_cols=128 Identities=13% Similarity=0.164 Sum_probs=79.5
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCC-CCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~-~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
+-.|+-++.-|-.-.+...+...+-+..| .+++++-. ...++ +.....+.+.=+++.|.. .+..-..+..+.+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G---~eVi~LG~~vp~e~--i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~ 76 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAG---FEVINLGVMTSQEE--FIDAAIETDADAILVSSL-YGHGEIDCRGLRE 76 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCC---CEEEECCCCCCHHH--HHHHHHHcCCCEEEEcCc-cccCHHHHHHHHH
Confidence 34577788888888888877776655544 66777753 33444 666666666544444444 3344466777888
Q ss_pred HHhccCCCCCCCCCceEEEEEe---cCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHHH
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGL---GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGl---Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~ 236 (694)
.|++.. +.+.++.+=|. +++.+ ....++|+++|...+++.+. ..++.-.|..+.|
T Consensus 77 ~L~~~~-----~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~------~~~~i~~~l~~~~ 134 (137)
T PRK02261 77 KCIEAG-----LGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT------DPEEAIDDLKKDL 134 (137)
T ss_pred HHHhcC-----CCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC------CHHHHHHHHHHHh
Confidence 887653 44555444442 22223 56678899999988887543 3456667765544
No 142
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=87.80 E-value=0.22 Score=54.92 Aligned_cols=61 Identities=30% Similarity=0.537 Sum_probs=54.4
Q ss_pred EEEecCcch------hHHHHHHHHHHHHHHHcCCeEeecceeecCCC--CchHHHHHHHHHHHHHHHhh
Q 005496 182 VFGLGNRQY------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 182 vFGlGds~Y------~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~--~~e~~~~~W~~~l~~~L~~~ 242 (694)
|||+||+.| ..|++-.|.+..+|.+++|....++|+|+|++ +....+..|--.||++|..-
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 689999998 36899999999999999999999999999887 67888999999999998763
No 143
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=85.55 E-value=16 Score=34.27 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=80.6
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCC-CCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 005496 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (694)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~-~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L 165 (694)
+|+-|+--|..-.....+-..+-+..| .+++|+-- ...+ ++++...+++.=+++.|+. .|.--..++++.+.|
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~G---feVi~LG~~v~~e--~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l 76 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAG---FNVVNLGVLSPQE--EFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKC 76 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCC---CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHH
Confidence 466678888888888766655544444 66788753 3343 4777777888877777777 455556788888888
Q ss_pred hccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHH
Q 005496 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (694)
Q Consensus 166 ~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~ 234 (694)
++.. +.+.. .++| |.-..+. .-...+.++|+++|..++++.+. .-++.-.|..+
T Consensus 77 ~~~g-----l~~~~-vivG-G~~vi~~--~d~~~~~~~l~~~Gv~~vF~pgt------~~~~iv~~l~~ 130 (134)
T TIGR01501 77 DEAG-----LEGIL-LYVG-GNLVVGK--QDFPDVEKRFKEMGFDRVFAPGT------PPEVVIADLKK 130 (134)
T ss_pred HHCC-----CCCCE-EEec-CCcCcCh--hhhHHHHHHHHHcCCCEEECcCC------CHHHHHHHHHH
Confidence 7754 55544 3455 4322210 00133567899999999887553 33566666543
No 144
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.39 E-value=12 Score=34.86 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=71.4
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCC-CCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHh
Q 005496 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (694)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~-~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~ 166 (694)
|+-|+.-|..-.....|-..+-+..| .+++|+-- ...+ ++++...+++.=+++.|+. .|.--..+++..+.|+
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~G---feVidLG~~v~~e--~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAG---FNVVNLGVLSPQE--EFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCD 75 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHCC---CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHH
Confidence 56678888888887776665544444 66788753 3333 4777777778767777776 4544577888888887
Q ss_pred ccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecce
Q 005496 167 EGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (694)
Q Consensus 167 ~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (694)
+.. +...+ |+.=|.-.-+ ..-...-.++|+++|..++++.|
T Consensus 76 ~~g-----l~~v~--vivGG~~~i~--~~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 76 EAG-----LKDIL--LYVGGNLVVG--KQDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred HCC-----CCCCe--EEEECCCCCC--hhhhHHHHHHHHHcCCCEEECcC
Confidence 753 44433 3333432110 00013345789999999998765
No 145
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=82.39 E-value=0.24 Score=44.38 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=3.7
Q ss_pred CHHHHHHhCCC--CCCChHHHHHHhcCCC-----CCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhc
Q 005496 443 SLLEVMAEFPS--ATPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA 515 (694)
Q Consensus 443 ~l~dvl~~fps--~~~p~~~ll~~~~p~l-----~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l 515 (694)
++++|....|. .+..+||++-+.+|.+ +..+|||+|+|. .+.+.++|+. .|-.|.-|.+.
T Consensus 15 ~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~ 81 (105)
T PF08022_consen 15 DVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHH
Confidence 44455445554 4567899888866754 567999999997 5788888874 35566666654
Q ss_pred CCC--CCCCCccEEEEEeeCC
Q 005496 516 IPL--EGNGDCSWAPIFIRPS 534 (694)
Q Consensus 516 ~~g--~~~~~~~~v~v~~~~g 534 (694)
... .+.....++.|.+|+|
T Consensus 82 ~~~~~~~~~~~~~v~idGPYG 102 (105)
T PF08022_consen 82 LSESPSKQGNRLRVFIDGPYG 102 (105)
T ss_dssp ---------------TTSTTS
T ss_pred HhhhcccCCCceEEEEECCCC
Confidence 211 0011113555566665
No 146
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=79.78 E-value=1.5 Score=40.16 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchhhhhcCCCCCCCCccEEEEEeeCCCc
Q 005496 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 536 (694)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~itv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F 536 (694)
+...|.|||.+.... .+++.|-+.+.. ..|.+|.|..++++| +.|.|.+|.|.|
T Consensus 64 ~p~~R~YTvR~~d~~-~~~l~iDfv~Hg--------~~Gpas~WA~~A~pG------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 64 RPVMRTYTVRRFDPE-TGELDIDFVLHG--------DEGPASRWARSARPG------DRVGVTGPRGSF 117 (117)
T ss_dssp --EEEEEE--EEETT---EEEEEEE--S--------S--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCCcCEeeEcCC-CCEEEEEEEECC--------CCCchHHHHhhCCCC------CEEEEeCCCCCC
Confidence 346799999987533 345555554321 139999999999999 899999998877
No 147
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=73.52 E-value=2.2 Score=47.05 Aligned_cols=126 Identities=12% Similarity=-0.016 Sum_probs=84.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhcc-CCeEEEEEecCCCCCCChhHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~-~~~vif~~sTyG~G~~p~na~~F 161 (694)
-.-++|.=+=++|-+-.+|+.|++.+.+.|= ++-+ - . .++...+..+.. +-.+++.+-|.-.|.+.+-.++|
T Consensus 357 calslVgepi~yp~in~f~k~lH~k~issfl---vtna--q-~-pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdF 429 (601)
T KOG1160|consen 357 CALSLVGEPIMYPEINPFAKLLHQKLISSFL---VTNA--Q-F-PEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDF 429 (601)
T ss_pred heeeeecccccchhhhHHHHHHHhccchHHh---cccc--c-C-hHHHhchhhhheeEEEEeecchhhhcCCCCchHHHH
Confidence 3457788889999999999999988765532 2111 0 0 111000111221 22466667777778899999999
Q ss_pred HHHHhccCCC---CCCCCCceEEEEEecCcch--hHHHHHHHHHHHHHHHcCCeEeecc
Q 005496 162 YKWFTEGNDR---GPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 215 (694)
Q Consensus 162 ~~~L~~~~~~---~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (694)
|+||.+.... .....--++.+.|.||+.= ..||.+++-+-.+++-+|++-+.+.
T Consensus 430 wEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ges 488 (601)
T KOG1160|consen 430 WERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGES 488 (601)
T ss_pred HHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEeccc
Confidence 9998763211 1123345788999898885 7899999999999999999987554
No 148
>PRK05907 hypothetical protein; Provisional
Probab=66.09 E-value=1.2e+02 Score=32.55 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=72.4
Q ss_pred hHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhh-----ccCCeEEEE-Eec
Q 005496 75 DEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-----KKETLAFFM-VAT 148 (694)
Q Consensus 75 ~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l-----~~~~~vif~-~sT 148 (694)
....++++. .++++||++. +...++|.+.+-.. + ...+|.++++.+. +++.. ..++-+|++ -|
T Consensus 10 ~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~--~--~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~- 78 (311)
T PRK05907 10 FSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSG--R--KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA- 78 (311)
T ss_pred HHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCC--c--cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc-
Confidence 333444444 8999999999 77777776665322 2 2447888777655 43332 233333433 22
Q ss_pred CCCCCCC-hhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHH
Q 005496 149 YGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDD 227 (694)
Q Consensus 149 yG~G~~p-~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~ 227 (694)
+.+. .+.+.+.+++.+.. .....-||.. .++|+.+.-|.+.+ |+. +-..++. ....+.+
T Consensus 79 ---~~~~~~~~~~L~~Yl~np~------~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v~~~~e~--~~l~e~~ 138 (311)
T PRK05907 79 ---EKMSSSTQEFLIRYARNPN------PHLTLFLFTT---KQECFSSLSKKLSS-----ALC-LSLFGEW--FADRDKR 138 (311)
T ss_pred ---cccccccHHHHHHHHhCCC------CCeEEEEEEe---cccHHHHHHHHHhh-----cce-ecccccc--CCCCHHH
Confidence 2222 35667888887732 2234444654 26677655555543 321 2000111 1234688
Q ss_pred HHHHHHHHHHHH
Q 005496 228 FTAWRELVWPEL 239 (694)
Q Consensus 228 ~~~W~~~l~~~L 239 (694)
+..|..+.....
T Consensus 139 L~~Wi~~~~~~~ 150 (311)
T PRK05907 139 IAQLLIQRAKEL 150 (311)
T ss_pred HHHHHHHHHHHc
Confidence 999997765443
No 149
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=61.08 E-value=64 Score=36.16 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=63.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc-CchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~-~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
...++|.|||..++++..++.|.+ + |.++.++++.-+.+ +.+.+...+.+.+.|+++=-++-.|..-....++
T Consensus 268 ad~~iV~~Gs~~~~a~ea~~~L~~----~--G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 268 AEVAIVALGTTYESAIVAAKEMRK----E--GIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred CCEEEEEEChhHHHHHHHHHHHHh----C--CCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 346888899988888888877643 4 66677777665432 2223445566677788776666455444455555
Q ss_pred HHHHhccCCCCCCCCCceE---EEEEecCcch--hHHHHHHHHHHH
Q 005496 162 YKWFTEGNDRGPWLQQLKF---GVFGLGNRQY--EHFNKIGIVLDE 202 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~---avFGlGds~Y--~~f~~~~k~ld~ 202 (694)
...|..... ..... .++|+|.+.+ +..-++.+.+.+
T Consensus 342 ~~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 342 TSAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHHh
Confidence 555543210 01233 6778887776 444444444433
No 150
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=61.00 E-value=71 Score=29.81 Aligned_cols=111 Identities=12% Similarity=0.000 Sum_probs=67.8
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 005496 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (694)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L 165 (694)
+.|+-++.-|..-+....|...+-+..| ++|+++.-+... +++.+...+++.=+++.|+. .+.-.+.+....+.|
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~G---feVi~lg~~~s~-e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~L 77 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLG---FDVDVGPLFQTP-EEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKEL 77 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCC---cEEEECCCCCCH-HHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHHH
Confidence 4567778888888887777766654434 667777644222 23666666677645555555 455556788888888
Q ss_pred hccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecce
Q 005496 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (694)
Q Consensus 166 ~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (694)
++.. +...+ |+.=|.-- +.-.+.|+++|..+++..|
T Consensus 78 ~~~g-----~~~i~--vivGG~~~--------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 78 DKLG-----RPDIL--VVVGGVIP--------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HhcC-----CCCCE--EEEeCCCC--------hHhHHHHHHCCCCEEECCC
Confidence 7743 33333 33323322 2223459999999988765
No 151
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.00 E-value=47 Score=32.36 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=56.9
Q ss_pred hhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEE-cCCCCCcCchhHHhhhccC--CeEEEEEecCC
Q 005496 74 DDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLKKE--TLAFFMVATYG 150 (694)
Q Consensus 74 ~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~-dl~~~d~~~~~~~~~l~~~--~~vif~~sTyG 150 (694)
...+...+++.+|.++ |.++..++.+++.++++|+++.+--+ +.---+.++..++..+... ++|++++.+=
T Consensus 37 ~ll~~~~~~~~~v~ll-----G~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~P- 110 (171)
T cd06533 37 ALLELAAQKGLRVFLL-----GAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAP- 110 (171)
T ss_pred HHHHHHHHcCCeEEEE-----CCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC-
Confidence 3444444456666655 55566666666666667887765432 2111111122244555543 4566554332
Q ss_pred CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCC
Q 005496 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 209 (694)
Q Consensus 151 ~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa 209 (694)
.-+.|...+.+. + ..-.+||+|.+ ++.+.+..+.-=+++.++|-
T Consensus 111 ------kQE~~~~~~~~~------l--~~~v~~~vG~~-~d~~aG~~~raP~w~~~~gl 154 (171)
T cd06533 111 ------KQELWIARHKDR------L--PVPVAIGVGGS-FDFLAGTVKRAPKWMQKLGL 154 (171)
T ss_pred ------HHHHHHHHHHHH------C--CCCEEEEecee-eEeccCCcccCcHHHHHhCc
Confidence 334455555543 2 12346666654 44444444444555555554
No 152
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.07 E-value=2.3e+02 Score=30.45 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=75.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHh---hhccC---CeEEEEEecC-------
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEE---KLKKE---TLAFFMVATY------- 149 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~---~l~~~---~~vif~~sTy------- 149 (694)
..++.|+....--.+..|++...+.+++- |+..+++.+.+-..++ +++. ++.++ +.+++-.|--
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~t~~-~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~ 109 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEA--GIRSLEHRLPADTSQA-RLLALIAELNADPSVNGILLQLPLPAHIDEAR 109 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHH-HHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHH
Confidence 45677777777777788888777777776 7777777775432221 2222 23222 2455555522
Q ss_pred ------------------------C-CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHH
Q 005496 150 ------------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (694)
Q Consensus 150 ------------------------G-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (694)
| .+-.|-++..-++.|+.... .++|++++|+|.|+.- ++-+...|
T Consensus 110 i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~V~vIG~s~iv-------G~PmA~~L 179 (301)
T PRK14194 110 VLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCG---DLTGKHAVVIGRSNIV-------GKPMAALL 179 (301)
T ss_pred HHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCC---CCCCCEEEEECCCCcc-------HHHHHHHH
Confidence 1 12246666667777766443 3999999999986554 78899999
Q ss_pred HHcCCeEe
Q 005496 205 CKQGGARL 212 (694)
Q Consensus 205 ~~lGa~~i 212 (694)
.+.|++..
T Consensus 180 ~~~gatVt 187 (301)
T PRK14194 180 LQAHCSVT 187 (301)
T ss_pred HHCCCEEE
Confidence 99999764
No 153
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=56.11 E-value=45 Score=33.55 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=42.5
Q ss_pred eEEEEEECCCc----hHHHHHHHHHHHHHhhhCCCeeEEE-cCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005496 85 KVTVFYGTQTG----TAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (694)
Q Consensus 85 ~v~I~YgSqtG----tte~~A~~la~~l~~~~~g~~~~v~-dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (694)
+|+|+++.-+| ..+...+.|++.|++. +++++.+. |.+.+..++ |...+++||.... ++--.++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~-~~~~v~~~~~~~~~~~~~------L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEES-EGFEVTVTEDPDDLTPEN------LKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHT-TCEEEEECCSGGCTSHHC------HCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccC-CCEEEEEEeCcccCChhH------hcCCCEEEEECCC-CCcCCHHHHH
Confidence 58888888433 2235666676666632 25666654 344454444 8888988777655 2223444566
Q ss_pred HHHHHHhc
Q 005496 160 RFYKWFTE 167 (694)
Q Consensus 160 ~F~~~L~~ 167 (694)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77778765
No 154
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=55.49 E-value=2.3e+02 Score=28.51 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=89.8
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc---------------------Cc-------hh
Q 005496 83 KTKVTVFYGTQTG---TAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------------DD-------EQ 131 (694)
Q Consensus 83 ~~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g~~~~v~dl~~~d~---------------------~~-------~~ 131 (694)
|++|+++=+|-.| -+..+++++.+..++.+++.++...||.+-.. ++ +.
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 4577888777774 35677777777888777777776666542211 00 23
Q ss_pred HHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccC--------CCCCCCCCceEEEEEecCcchhH----HHHHHHH
Q 005496 132 YEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQYEH----FNKIGIV 199 (694)
Q Consensus 132 ~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~--------~~~~~l~~~~~avFGlGds~Y~~----f~~~~k~ 199 (694)
+++++...+.+||+.|=| +-..|...+.+++.+.... .+...+.+|++.+...=-.-|.+ ++-...-
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 666778889999999999 7788888888888876421 12356888999888753333533 5667788
Q ss_pred HHHHHHHcCCeEe
Q 005496 200 LDEELCKQGGARL 212 (694)
Q Consensus 200 ld~~L~~lGa~~i 212 (694)
|...|.=+|.+-+
T Consensus 160 Lr~ilgF~Gitd~ 172 (202)
T COG1182 160 LRTILGFLGITDV 172 (202)
T ss_pred HHHHhhhcCCCcc
Confidence 8888888998643
No 155
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=54.62 E-value=35 Score=29.03 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=28.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEE
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV 119 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v 119 (694)
.+++++.++-.|++.-++.+|.+.+.+. ++.+.+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~--~i~~~v 34 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKEN--GIDVKV 34 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEE
Confidence 3689999999999999999999999766 554443
No 156
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=53.88 E-value=16 Score=35.50 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=41.9
Q ss_pred CCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHH
Q 005496 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (694)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W 231 (694)
+...+++|+-.||+....++..+..+...|++.|++...-....||.+.+.+.+++|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 567899999999999887888999999999999998554333334433444455444
No 157
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=52.74 E-value=41 Score=28.97 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=29.5
Q ss_pred EEEEEeEEecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 005496 297 VNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (694)
Q Consensus 297 a~v~~~~~L~~~~~~r~~~hi~~di~~~--~l~Y~~GD~l~V~p~ 339 (694)
++|++.++++. ++.+++|.+++. .+.|+||.++.|.-.
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 67888888873 788999988843 478999999999766
No 158
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=52.29 E-value=67 Score=33.23 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhCCCeeEEEcCCCCCc---C-c-hhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCC
Q 005496 99 GFAKALAEEIKARYEKAAVKVVDLDDYAM---D-D-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGP 173 (694)
Q Consensus 99 ~~A~~la~~l~~~~~g~~~~v~dl~~~d~---~-~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~ 173 (694)
.-++.+++.|.+. |..+-.+.+-++.. . . ...+..+..++.+||.|++- .+.|.++|.....+
T Consensus 13 ~~~~~l~~~l~~~--G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~na--------V~~~~~~l~~~~~~-- 80 (255)
T PRK05752 13 EECAALAASLAEA--GIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPA--------ARLGLELLDRYWPQ-- 80 (255)
T ss_pred HHHHHHHHHHHHc--CCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHH--------HHHHHHHHHhhCCC--
Confidence 3456666777666 66655443222211 1 0 11234467788888877543 56677888654322
Q ss_pred CCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 174 ~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
..+.++++.| +.-.+.|++.|.+...+
T Consensus 81 -~~~~~~~aVG-------------~~Ta~al~~~G~~~~~~ 107 (255)
T PRK05752 81 -PPQQPWFSVG-------------AATAAILQDYGLDVSYP 107 (255)
T ss_pred -CcCCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 4457888887 55667777888765443
No 159
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=50.34 E-value=1.9e+02 Score=25.88 Aligned_cols=108 Identities=16% Similarity=0.042 Sum_probs=59.9
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhc
Q 005496 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (694)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~ 167 (694)
|+.++.-|..-.+.-.+...+-+.. |++ ++++...- ..+++...+.+.+.-+++.|++ .+.....+.++.+.+++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~-G~~--V~~lg~~~-~~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDA-GFE--VIDLGVDV-PPEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKE 76 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHC-CCE--EEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHH
Confidence 5666777777777766666654443 444 56554322 2223555565555434443433 34444777778888877
Q ss_pred cCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecc
Q 005496 168 GNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (694)
Q Consensus 168 ~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (694)
.. ..+..+.+=|. .. .... +.++++|+..+++.
T Consensus 77 ~~-----~~~~~i~vGG~---~~---~~~~----~~~~~~G~D~~~~~ 109 (119)
T cd02067 77 AG-----LDDIPVLVGGA---IV---TRDF----KFLKEIGVDAYFGP 109 (119)
T ss_pred cC-----CCCCeEEEECC---CC---ChhH----HHHHHcCCeEEECC
Confidence 42 12444444442 12 1111 57889999888764
No 160
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.89 E-value=93 Score=28.82 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=47.4
Q ss_pred hHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCC
Q 005496 75 DEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (694)
Q Consensus 75 ~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~ 154 (694)
+.+.+.+.+.-..+-+|+..|+++.+|.+|.+... +.+..++..++--.. ...+.+..++|++++ .|+-
T Consensus 6 ~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is~---~g~t 74 (153)
T cd05009 6 LAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLAP---EDRL 74 (153)
T ss_pred HHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEec---CChh
Confidence 44444444444556678899999999998887642 235555555443222 111444556666553 3333
Q ss_pred ChhHHHHHHHHhc
Q 005496 155 TDNAARFYKWFTE 167 (694)
Q Consensus 155 p~na~~F~~~L~~ 167 (694)
.+.+.+..+++++
T Consensus 75 ~~~~~~~~~~~~~ 87 (153)
T cd05009 75 EEKLESLIKEVKA 87 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 3456667777776
No 161
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=47.71 E-value=1.5e+02 Score=28.90 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=55.2
Q ss_pred hHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC-cCchhHHhhhccC--CeEEEEEecCCC
Q 005496 75 DEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKE--TLAFFMVATYGD 151 (694)
Q Consensus 75 ~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d-~~~~~~~~~l~~~--~~vif~~sTyG~ 151 (694)
.......++.+|.+ +|+ ++..++++++.|.++|+++.+.-..--.++ .+++.++..+.+. ++|++++.+-
T Consensus 40 l~~~~~~~~~~ifl-lG~----~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P-- 112 (172)
T PF03808_consen 40 LLRRAEQRGKRIFL-LGG----SEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP-- 112 (172)
T ss_pred HHHHHHHcCCeEEE-EeC----CHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC--
Confidence 33333334555544 444 455555555666667877665433222222 2233456666544 4565554432
Q ss_pred CCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCC
Q 005496 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 209 (694)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa 209 (694)
--+.|....... +... .++|+|..- +.+.+..+..-+.+.++|-
T Consensus 113 -----kQE~~~~~~~~~------l~~~--v~i~vG~~~-d~~aG~~~raP~w~~~~gl 156 (172)
T PF03808_consen 113 -----KQERWIARHRQR------LPAG--VIIGVGGAF-DFLAGKVKRAPKWMRRLGL 156 (172)
T ss_pred -----HHHHHHHHHHHH------CCCC--EEEEECchh-hhhccCcCccCHHHHHcCc
Confidence 334566665553 3332 566666432 3444444444444444443
No 162
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=46.25 E-value=1.8e+02 Score=32.88 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=74.8
Q ss_pred eEEEEEECCC-------chHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC--cCc-hhHHhhhc--cCCeEEEEEecCCCC
Q 005496 85 KVTVFYGTQT-------GTAEGFAKALAEEIKARYEKAAVKVVDLDDYA--MDD-EQYEEKLK--KETLAFFMVATYGDG 152 (694)
Q Consensus 85 ~v~I~YgSqt-------Gtte~~A~~la~~l~~~~~g~~~~v~dl~~~d--~~~-~~~~~~l~--~~~~vif~~sTyG~G 152 (694)
+|.++-+|+. ..+++.++++.+.|.+. + +++++....+ .++ ..+.+.+. +.+.+|+..+|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNEL--P--VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcC--C--ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4666666766 34666777777777644 3 4555555443 111 11223343 346899999999654
Q ss_pred CCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCc--------chhHHHHHHHHHHHHHHHcCCeEeecceeecCCC-C
Q 005496 153 EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR--------QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-C 223 (694)
Q Consensus 153 ~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds--------~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~-~ 223 (694)
......++. + ++.+.+++..+. .+..+|.. ..+-..|.++|-+...-. |+..+ .
T Consensus 78 ------~~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v~--g~~~d~~ 140 (452)
T cd00578 78 ------KMWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVVY--GHWKDED 140 (452)
T ss_pred ------HHHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEEE--CCCCCHH
Confidence 223333433 2 467888887654 23445543 678888999998754333 33322 4
Q ss_pred chHHHHHHHH
Q 005496 224 IEDDFTAWRE 233 (694)
Q Consensus 224 ~e~~~~~W~~ 233 (694)
..+.+..|..
T Consensus 141 ~~~~i~~~~r 150 (452)
T cd00578 141 VLRKIESWAR 150 (452)
T ss_pred HHHHHHHHHH
Confidence 5677888875
No 163
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=45.02 E-value=65 Score=33.25 Aligned_cols=91 Identities=20% Similarity=0.072 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhhCCCeeEEEcCCCCCcC--chhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCCCCC
Q 005496 99 GFAKALAEEIKARYEKAAVKVVDLDDYAMD--DEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (694)
Q Consensus 99 ~~A~~la~~l~~~~~g~~~~v~dl~~~d~~--~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~ 176 (694)
.-|..+++.+... |..+-.+.+-++... -+..+..+..++.++|-|+.- .+.|++.+.....+ +++
T Consensus 11 ~~~~~~~~~l~~~--G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~a--------v~~~~~~l~~~~~~--~~~ 78 (248)
T COG1587 11 EQAEELAALLRKA--GAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNA--------VRFFFEALKEQGLD--ALK 78 (248)
T ss_pred hhhHHHHHHHHhC--CCcceeecceeeecchhHHHHHhccccCCEEEEECHHH--------HHHHHHHHHhhccc--ccc
Confidence 4455556666656 665444433222221 011334455567777666533 56677777664322 678
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 177 ~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
++++++.| ..-.+.|+++|.+....
T Consensus 79 ~~~i~aVG-------------~~Ta~~l~~~G~~~~~~ 103 (248)
T COG1587 79 NKKIAAVG-------------EKTAEALRKLGIKVDFI 103 (248)
T ss_pred cCeEEEEc-------------HHHHHHHHHhCCCCCcC
Confidence 89999998 67788899999876544
No 164
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=44.33 E-value=37 Score=31.85 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=30.6
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCc
Q 005496 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM 127 (694)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~ 127 (694)
-+++|.|.|...+..|+.|.+-+.++ |..+++..+.+.+.
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~--g~~v~~~~i~~l~~ 63 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEK--GINVEVVEIEGLQT 63 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEE---E--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeeeecc
Confidence 78999999999999999999999987 77787776554443
No 165
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=44.02 E-value=46 Score=33.61 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=32.5
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccC
Q 005496 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 340 (694)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hi~~di~~~-~l~Y~~GD~l~V~p~N 340 (694)
|.++|+..+.++. +++++.|+++.. .+.|+||.++.|..++
T Consensus 1 ~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 1 FVGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred CceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 4578888888864 688999987653 6799999999998654
No 166
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=43.37 E-value=1.1e+02 Score=33.71 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=59.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
+.+|.++||.-|-.+++...-+.++... .=.+.. .|.- +.-++.+|.. ...|..++....
T Consensus 66 ~d~V~~ifGc~TSasRKaVlPvvE~~~~------LL~Yp~-~YEG--------~E~S~nviYt-----Ga~PNQ~~~pl~ 125 (363)
T PF13433_consen 66 EDGVRAIFGCYTSASRKAVLPVVERHNA------LLFYPT-QYEG--------FECSPNVIYT-----GAAPNQQLLPLI 125 (363)
T ss_dssp HS---EEEE--SHHHHHHHHHHHHHCT-------EEEE-S-----------------TTEEE------S--GGGTHHHHH
T ss_pred hCCccEEEecchhhhHHHHHHHHHhcCc------eEEecc-cccc--------ccCCCceEEc-----CCCchhhHHHHH
Confidence 4567888888888777776655553321 112222 1211 2223344432 233556799999
Q ss_pred HHHhccCCCCCCCCC-ceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecc
Q 005496 163 KWFTEGNDRGPWLQQ-LKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~-~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (694)
+|+.+. .| +++...|. +|-|=-.+-|.+.+.+++.|++.+.+.
T Consensus 126 ~~~~~~-------~G~~r~~lvGS---dYv~pre~Nri~r~~l~~~GgevvgE~ 169 (363)
T PF13433_consen 126 DYLLEN-------FGAKRFYLVGS---DYVYPRESNRIIRDLLEARGGEVVGER 169 (363)
T ss_dssp HHHHHH-------S--SEEEEEEE---SSHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHhc-------cCCceEEEecC---CccchHHHHHHHHHHHHHcCCEEEEEE
Confidence 999874 36 99999995 787777788999999999999888654
No 167
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=42.32 E-value=60 Score=35.19 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=54.6
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCch-hHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005496 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-QYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (694)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~-~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (694)
++..-++|-|||+++.+.+.|+.|.+ + |+++.++|+....+=+. .+...+.+.+.||.+=-.+-.|..-..
T Consensus 200 ~G~di~iva~G~~~~~a~eAa~~L~~----~--Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~-- 271 (327)
T PRK09212 200 EGSDVTIVTFSIQVKLALEAAELLEK----E--GISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAE-- 271 (327)
T ss_pred eCCCEEEEEccHHHHHHHHHHHHHHh----c--CCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHH--
Confidence 45566778899999999999887754 4 78888888776655443 355666778888888777756665444
Q ss_pred HHHHHHhc
Q 005496 160 RFYKWFTE 167 (694)
Q Consensus 160 ~F~~~L~~ 167 (694)
+.++|.+
T Consensus 272 -la~~l~~ 278 (327)
T PRK09212 272 -IAALIMK 278 (327)
T ss_pred -HHHHHHH
Confidence 5555554
No 168
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=42.28 E-value=1.4e+02 Score=29.80 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=60.6
Q ss_pred hhhHHHHhcC-CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE---EEcCCCCCcCchhHHhhhccC--CeEEEEE
Q 005496 73 EDDEADIAAG-KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKLKKE--TLAFFMV 146 (694)
Q Consensus 73 ~~~~~~~~~~-~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~---v~dl~~~d~~~~~~~~~l~~~--~~vif~~ 146 (694)
++....+.+. ..+..|+|..--+....+++.|.+ . |+.+. ++.....+.. +.....+... +.++|.|
T Consensus 109 ~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~----~--g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS 181 (239)
T cd06578 109 EGLLELLELQDGKGKRILRPRGGRAREDLAEALRE----R--GAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTS 181 (239)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHH----C--CCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeC
Confidence 3444444442 345566666655555666655543 3 44333 3333222211 1122323333 3344444
Q ss_pred ecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 147 sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
+. .++.|.+++.+.. ..++.+.++.++| ....+.|++.|.+.+..
T Consensus 182 ~~--------~v~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 182 PS--------TVRNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVIV 226 (239)
T ss_pred HH--------HHHHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCceee
Confidence 33 5788888887532 1237788888887 67788888899876643
No 169
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.28 E-value=4.6e+02 Score=27.81 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeE
Q 005496 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (694)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (694)
.|.+..-|++.|+.... .++|+++.|+|-|. -++|-+...|.+.||+.
T Consensus 139 ~p~T~~gii~~L~~~~i---~l~Gk~vvViG~gg-------~vGkpia~~L~~~gatV 186 (283)
T PRK14192 139 GSATPAGIMRLLKAYNI---ELAGKHAVVVGRSA-------ILGKPMAMMLLNANATV 186 (283)
T ss_pred cCCcHHHHHHHHHHcCC---CCCCCEEEEECCcH-------HHHHHHHHHHHhCCCEE
Confidence 35555779999987543 39999999999432 35788999999999954
No 170
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=40.34 E-value=50 Score=33.96 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=29.2
Q ss_pred EEecCCCCC-CceEEEEEEecCCCCccCCCCeEEEeccC
Q 005496 303 RELHKPDSD-RSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (694)
Q Consensus 303 ~~L~~~~~~-r~~~hi~~di~~~~l~Y~~GD~l~V~p~N 340 (694)
+.+.++++. ..+++|+|+.++....|+||+++.|.+.+
T Consensus 6 ~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 6 RVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 345555543 37999999987667899999999998765
No 171
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=40.15 E-value=1.5e+02 Score=31.09 Aligned_cols=88 Identities=8% Similarity=-0.009 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEEcCCCC---Cc-CchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCC
Q 005496 98 EGFAKALAEEIKARYEKAAVKVVDLDDY---AM-DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGP 173 (694)
Q Consensus 98 e~~A~~la~~l~~~~~g~~~~v~dl~~~---d~-~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~ 173 (694)
+.-++.+++.|++. |..+-.+.+=++ +. .....+..|.+++.+||.|++- .+.|..++ +. .
T Consensus 27 ~~q~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA--------V~~~~~~~-~~----~ 91 (266)
T PRK08811 27 SGEHAPLRRAVARH--GGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA--------VRAAHRLL-PL----Q 91 (266)
T ss_pred HHHHHHHHHHHHHC--CCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH--------HHHHHHHh-cc----c
Confidence 34556677777766 666544433211 11 1112345567888888877532 34444433 21 2
Q ss_pred CCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 174 ~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
++.+.++++.| +.-.+.|++.|.....
T Consensus 92 ~~~~~~~~AVG-------------~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 92 RPARAHWLSVG-------------EGTARALQACGIDEVV 118 (266)
T ss_pred CccCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 36788888887 5566677788886543
No 172
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=39.94 E-value=1.8e+02 Score=32.44 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=60.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCC---CCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD---DYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~---~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (694)
..-+.|.|||.+|+++..++.+.+ + |.++-++.+. -+..+. +..-+.+.+.|+++=-++-.|..-.-+.
T Consensus 260 Ae~~iV~~Gs~~~~~~eav~~lr~----~--G~kvg~l~i~~~~PfP~~~--i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ 331 (390)
T PRK08366 260 ADFVFMGMGSLMGTVKEAVDLLRK----E--GYKVGYAKVRWFRPFPKEE--LYEIAESVKGIAVLDRNFSFGQEGILFT 331 (390)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHh----c--CCceeeEEEeeecCCCHHH--HHHHHhcCCEEEEEeCCCCCCcccHHHH
Confidence 346888999999999999987754 3 4445444443 333332 4455667788888866642233222222
Q ss_pred HHHHHHhccCCCCCCCCCceEEEEEecCcch--hHHHHHHHHHHH
Q 005496 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (694)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k~ld~ 202 (694)
+....|.+... -.-+.-.|.|+|-+.+ ++.-++.+.+.+
T Consensus 332 ev~~~l~~~~~----~~~~~~~i~g~gGr~~t~~~i~~~~~~~~~ 372 (390)
T PRK08366 332 EAKGALYNTDA----RPIMKNYIVGLGGRDFTVNDVKAIAEDMKK 372 (390)
T ss_pred HHHHHHhccCC----CCceeceEeCcCCccCCHHHHHHHHHHHHH
Confidence 22222322110 0113457889998886 555554444433
No 173
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=38.66 E-value=1e+02 Score=32.03 Aligned_cols=83 Identities=10% Similarity=-0.005 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhc-cCC-eEEEEEecCCCCCCChhHHHHHHHHhccCCCCCC
Q 005496 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-KET-LAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (694)
Q Consensus 97 te~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~-~~~-~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~ 174 (694)
...+|++|++.+.+. |+.+...+--..|-.----+.-+. +.+ .||-++-.. +.+|...-+|=+.|.+
T Consensus 79 ~~eLa~~i~~~l~~~--gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~--~~~~~~~~~lG~aL~~------- 147 (253)
T cd07363 79 SPELAERVAELLKAA--GIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPA--SLDPAEHYALGRALAP------- 147 (253)
T ss_pred CHHHHHHHHHHHHhc--CCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecC--CCCHHHHHHHHHHHHh-------
Confidence 345899999999877 776655331112211100111122 223 244443333 2244444445555655
Q ss_pred CCCceEEEEEecCcch
Q 005496 175 LQQLKFGVFGLGNRQY 190 (694)
Q Consensus 175 l~~~~~avFGlGds~Y 190 (694)
+...+++|+|.|+.+.
T Consensus 148 l~~~~v~ii~SG~lsH 163 (253)
T cd07363 148 LRDEGVLIIGSGSSVH 163 (253)
T ss_pred hhhCCEEEEecCccee
Confidence 4456899999999875
No 174
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=38.33 E-value=1.7e+02 Score=29.37 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=37.3
Q ss_pred hhccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEe
Q 005496 135 KLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (694)
Q Consensus 135 ~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (694)
.+..++.+||.|++- +..|++++.+. ....+.+.++.+.| +...+.|++.|.+..
T Consensus 49 ~~~~~d~iiftS~~a--------v~~~~~~~~~~--~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 49 AALGADWVIFTSKNA--------VEFLLSALKKK--KLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred hCCCCCEEEEECHHH--------HHHHHHHHHhc--CcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 356778888877543 77788888721 12346778888887 566677778887653
No 175
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=38.31 E-value=57 Score=28.50 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=31.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEc
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVD 121 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~d 121 (694)
+|+++.||-.||+.-+|..+.+.+.++ |+.+++..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~--gi~~~v~~ 38 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQ 38 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 799999999999999999999999988 88777664
No 176
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=37.78 E-value=2.2e+02 Score=31.04 Aligned_cols=98 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (694)
..++++||=..|.-+.+|+.|.+.+.++ |..+-+++..-...+- + -+|+.-....+.+++.|++
T Consensus 76 P~vVl~HGL~G~s~s~y~r~L~~~~~~r--g~~~Vv~~~Rgcs~~~--------n------~~p~~yh~G~t~D~~~~l~ 139 (345)
T COG0429 76 PLVVLFHGLEGSSNSPYARGLMRALSRR--GWLVVVFHFRGCSGEA--------N------TSPRLYHSGETEDIRFFLD 139 (345)
T ss_pred ceEEEEeccCCCCcCHHHHHHHHHHHhc--CCeEEEEecccccCCc--------c------cCcceecccchhHHHHHHH
Confidence 4788999988888888999999999999 8878788776543321 1 1222223333478899999
Q ss_pred HHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeE
Q 005496 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (694)
Q Consensus 164 ~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (694)
+++.. ....++..+|. +.+ |-.+...|.+-|...
T Consensus 140 ~l~~~------~~~r~~~avG~---SLG-----gnmLa~ylgeeg~d~ 173 (345)
T COG0429 140 WLKAR------FPPRPLYAVGF---SLG-----GNMLANYLGEEGDDL 173 (345)
T ss_pred HHHHh------CCCCceEEEEe---ccc-----HHHHHHHHHhhccCc
Confidence 99875 45677888884 222 456777777766653
No 177
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=37.16 E-value=1.5e+02 Score=31.11 Aligned_cols=104 Identities=10% Similarity=0.036 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc--hhHHhhhc-cCC-eEEEEEecCCCCCCChhHHHHHHHHhccCCCC
Q 005496 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLK-KET-LAFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (694)
Q Consensus 97 te~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~--~~~~~~l~-~~~-~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~ 172 (694)
...+|++|++.+.+. |+.+...+-.+...|. ---+.-+. +.+ .+|.++-..+ .-.+...-+|=+.|.+.-.
T Consensus 86 ~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l~-- 160 (268)
T cd07371 86 DVELAEACVEEGRKA--GLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKATR-- 160 (268)
T ss_pred CHHHHHHHHHHHHHC--CCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHHH--
Confidence 467899999999877 7777654333332222 00011122 233 2444432332 2223333333344532100
Q ss_pred CCCCCceEEEEEecCcchh------------HHHHHHHHHHHHHHHc
Q 005496 173 PWLQQLKFGVFGLGNRQYE------------HFNKIGIVLDEELCKQ 207 (694)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~------------~f~~~~k~ld~~L~~l 207 (694)
-.+++++|+|+|+.+.. .|...++.+|+++.++
T Consensus 161 --~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 161 --DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred --HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 12478999999988752 2335667777777654
No 178
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=36.43 E-value=1.1e+02 Score=34.92 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEE---cCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCCC
Q 005496 98 EGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (694)
Q Consensus 98 e~~A~~la~~l~~~~~g~~~~v~---dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~ 174 (694)
+.-+..+++.|++. |+.+-.+ .+...+.. +..+.++.+++-++|-|+. ..+.|+++|.+...+-..
T Consensus 260 ~~q~~~l~~~L~~~--GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~n--------gV~~Ff~~l~~~~~D~R~ 328 (474)
T PRK07168 260 TNKTSVMKQKLQEA--GAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSAE--------SVEILMQSCSKYKKDIRS 328 (474)
T ss_pred HHHHHHHHHHHHHc--CCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCHH--------HHHHHHHHHHHcCCChHH
Confidence 34456677777766 6654333 22222221 2456778888877776543 367788999875444233
Q ss_pred CCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeE
Q 005496 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (694)
Q Consensus 175 l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (694)
|. .++++.| ....+.|++.|...
T Consensus 329 l~-~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 329 LQ-AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred hC-CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 55 6888887 56778888888754
No 179
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.09 E-value=5.6e+02 Score=27.28 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=71.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHH---hhhccC---CeEEEEEecC--------
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYE---EKLKKE---TLAFFMVATY-------- 149 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~---~~l~~~---~~vif~~sTy-------- 149 (694)
.++.|+....--.+..|++...+.+++- |+.++++.+.+-..++ +++ .+|.++ +.+++-.|--
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~-~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i 109 (284)
T PRK14179 33 PGLVVILVGDNPASQVYVRNKERSALAA--GFKSEVVRLPETISQE-ELLDLIERYNQDPTWHGILVQLPLPKHINEEKI 109 (284)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHH-HHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHH
Confidence 4566666665667777777777777666 6777777765432221 222 222222 2344443311
Q ss_pred -----------------------C-CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 005496 150 -----------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (694)
Q Consensus 150 -----------------------G-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~ 205 (694)
| .+-.|-++..-++.|+.... .++|++++|+|.++- +++=+...|.
T Consensus 110 ~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~v~vIG~S~i-------vG~Pla~lL~ 179 (284)
T PRK14179 110 LLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNV---ELEGKHAVVIGRSNI-------VGKPMAQLLL 179 (284)
T ss_pred HhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEECCCCc-------CcHHHHHHHH
Confidence 1 12346666667777776443 399999999996433 4788899999
Q ss_pred HcCCeEee
Q 005496 206 KQGGARLV 213 (694)
Q Consensus 206 ~lGa~~i~ 213 (694)
+.|++...
T Consensus 180 ~~gatVtv 187 (284)
T PRK14179 180 DKNATVTL 187 (284)
T ss_pred HCCCEEEE
Confidence 99998654
No 180
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=35.33 E-value=1.5e+02 Score=29.48 Aligned_cols=89 Identities=20% Similarity=0.123 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhCCCeeEEEcCCCCCc----CchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCCCCC
Q 005496 101 AKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (694)
Q Consensus 101 A~~la~~l~~~~~g~~~~v~dl~~~d~----~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~ 176 (694)
+..+.+.|.+. |+.+..+.+-+... ........+...+.+||.|+.- ++.|++.+.... ...+.
T Consensus 10 ~~~l~~~L~~~--G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~a--------v~~~~~~~~~~~--~~~~~ 77 (239)
T cd06578 10 ADELAALLEAL--GAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNA--------VEAFFEALEELG--LRALA 77 (239)
T ss_pred hHHHHHHHHHc--CCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHH--------HHHHHHHHHhhC--Ccccc
Confidence 55666777766 66655443322211 1111233445667788877643 677777776532 12367
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 177 ~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
+.++.+.| +...+.|++.|.+....
T Consensus 78 ~~~~~avG-------------~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 78 GLKIAAVG-------------PKTAEALREAGLTADFV 102 (239)
T ss_pred CCEEEEEC-------------HHHHHHHHHcCCCceeC
Confidence 88888887 67788899999887654
No 181
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=34.77 E-value=3.2e+02 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=22.4
Q ss_pred HHHHHhcccCCcEEEEeCCccchHHHHHHHHHH
Q 005496 631 AAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 631 ~~~l~~ll~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
...+.++|.+||.+|++=+.......+.+.+.+
T Consensus 115 l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 115 LKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 345667889999999987755555555555443
No 182
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=34.31 E-value=2.1e+02 Score=29.48 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=64.6
Q ss_pred hhhHHHHhcC---CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEE---cCCCCCcCchhH--HhhhccCCeEEE
Q 005496 73 EDDEADIAAG---KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQY--EEKLKKETLAFF 144 (694)
Q Consensus 73 ~~~~~~~~~~---~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~---dl~~~d~~~~~~--~~~l~~~~~vif 144 (694)
+..++.+... +++|+|+=+.... +.|.+.|.++ |+.+..+ +......+.... .....+.+.++|
T Consensus 110 ~~l~~~l~~~~~~~~~vl~~~~~~~r------~~l~~~L~~~--G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~f 181 (248)
T COG1587 110 EGLLEELPELLKGGKRVLILRGNGGR------EVLEEKLEER--GAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVF 181 (248)
T ss_pred HHHHHHhhhhccCCCeEEEEcCCCch------HHHHHHHHhC--CCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEE
Confidence 3444444442 4676666443322 5666777767 7665433 332222221001 122345567777
Q ss_pred EEecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 145 MVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 145 ~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
-||.. ++.|++.+...... ++..++++++| ....+.++++|.+...
T Consensus 182 tS~~~--------v~~~~~~~~~~~~~--~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 182 TSSSA--------VRALLALAPESGIE--FLERKRVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred eCHHH--------HHHHHHHccccchh--HhhCceEEEec-------------HHHHHHHHHcCCccee
Confidence 77665 88899888764321 46678899998 7788899999988643
No 183
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=34.11 E-value=38 Score=31.39 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=35.5
Q ss_pred eEEEEEecCcch--hHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHH
Q 005496 179 KFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (694)
Q Consensus 179 ~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W 231 (694)
+++|+-.||.-+ .-++..+..+.++|++.|++........|+.+.+.+.+++|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 478888888765 45577788999999999998665434445433344444444
No 184
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=33.91 E-value=2.7e+02 Score=31.12 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=56.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC-cCchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d-~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
..-++|.|||.+|+++...+.+.+ + |.++-++.+.-+- ...+.+.+.+.+.+.|+++=-++..|..-.-..+.
T Consensus 262 Ae~viV~~GS~~~~~keav~~LR~----~--G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV 335 (394)
T PRK08367 262 AEIIFVTMGSLAGTLKEFVDKLRE----E--GYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADA 335 (394)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHh----c--CCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHH
Confidence 345889999999999999887764 3 4445454443221 11122434456677777774443223211223333
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcch--hHHHHHHH
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGI 198 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y--~~f~~~~k 198 (694)
...|.... . -..+.-.+.|||.+.. +.+-.+.+
T Consensus 336 ~aal~~~~-~---~~~v~~~~~glgg~~~~~~~~~~~~~ 370 (394)
T PRK08367 336 SAALVNES-E---KPKILDFIIGLGGRDVTFKQLDEALE 370 (394)
T ss_pred HHHHhccC-C---CCeEEEEEeCCCCCCCCHHHHHHHHH
Confidence 33332211 0 1123467889998885 44444333
No 185
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=33.53 E-value=1.7e+02 Score=30.80 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEEcCCC--CCcCchhHHhhh-c-cCC-eEEEEEecCCCCCCChhHHHHHHHHhc-cC
Q 005496 96 TAEGFAKALAEEIKARYEKAAVKVVDLDD--YAMDDEQYEEKL-K-KET-LAFFMVATYGDGEPTDNAARFYKWFTE-GN 169 (694)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~--~d~~~~~~~~~l-~-~~~-~vif~~sTyG~G~~p~na~~F~~~L~~-~~ 169 (694)
+...+|++|++.+.+. |+.+...|-.. +|-.----+.-+ . ..+ .+|.++-+. ..++...-+|=+.|.+ ..
T Consensus 88 g~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~--~~~~~~~~~lG~al~~~l~ 163 (271)
T cd07373 88 SDTALAEACVTACPEH--GVHARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNL--YHSGEITEKLGAIAADAAK 163 (271)
T ss_pred CCHHHHHHHHHHHHHC--CCcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCC--CCCHHHHHHHHHHHHHHHH
Confidence 4678899999999877 77776555533 332211111112 1 122 244443322 2233343344455553 21
Q ss_pred CCCCCCCCceEEEEEecCcch
Q 005496 170 DRGPWLQQLKFGVFGLGNRQY 190 (694)
Q Consensus 170 ~~~~~l~~~~~avFGlGds~Y 190 (694)
-.+++++|+|+|+-+.
T Consensus 164 -----~~~~rV~iIgSG~lSH 179 (271)
T cd07373 164 -----DQNKRVAVVGVGGLSG 179 (271)
T ss_pred -----HcCCeEEEEEeccccc
Confidence 1358999999999885
No 186
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=32.91 E-value=1.1e+02 Score=25.97 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=30.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeE--EEcCCCC
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK--VVDLDDY 125 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~--v~dl~~~ 125 (694)
++|++++||--||+.-++..|.+.+.+. +.... ..++++.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~--~~~~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKA--GLEIPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEEEEcchhhC
Confidence 4689999999999999999999999866 55433 3344444
No 187
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.03 E-value=2.5e+02 Score=26.74 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=61.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhh-ccCCeEEEEEecCCCCCCChhHHHHH
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGDGEPTDNAARFY 162 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l-~~~~~vif~~sTyG~G~~p~na~~F~ 162 (694)
.+|+|.=--+-|.... |+.+++.|.+. |++| .+.--+..-+ ++.... .+.--+|.+|+++|... .-+....
T Consensus 13 prvlvak~GlDgHd~g-akvia~~l~d~--GfeV--i~~g~~~tp~-e~v~aA~~~dv~vIgvSsl~g~h~--~l~~~lv 84 (143)
T COG2185 13 PRVLVAKLGLDGHDRG-AKVIARALADA--GFEV--INLGLFQTPE-EAVRAAVEEDVDVIGVSSLDGGHL--TLVPGLV 84 (143)
T ss_pred ceEEEeccCccccccc-hHHHHHHHHhC--CceE--EecCCcCCHH-HHHHHHHhcCCCEEEEEeccchHH--HHHHHHH
Confidence 3444442224454432 45566666655 6554 4433333322 244333 45557888888886655 5566677
Q ss_pred HHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecce
Q 005496 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (694)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (694)
+.|++.- ..... |++=|+-.-+. ...|++.|..+++..+
T Consensus 85 e~lre~G-----~~~i~--v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 85 EALREAG-----VEDIL--VVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHHHhC-----CcceE--EeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 8887743 22222 34435554432 5678899999988764
No 188
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=31.92 E-value=2.1e+02 Score=29.15 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhCCCeeEEEcCCCCC--cCchhHHhhhccCCeEEEEEecCCCCCCCh-hHHHHHHHHhc
Q 005496 102 KALAEEIKARYEKAAVKVVDLDDYA--MDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKWFTE 167 (694)
Q Consensus 102 ~~la~~l~~~~~g~~~~v~dl~~~d--~~~~~~~~~l~~~~~vif~~sTyG~G~~p~-na~~F~~~L~~ 167 (694)
..|++.|++. |+.|.+..+++.+ ..+ +.|.++++||+.+-+ +.++.++ ..+.|.+++++
T Consensus 26 ~~~~~~L~~~--gf~V~~~~~~d~~~~~~~----~~L~~~D~lV~~~~~-~~~~l~~eq~~~l~~~V~~ 87 (215)
T cd03142 26 GTIAAALAEY--GFDVQTATLDEPEHGLTE----EVLAETDVLLWWGHI-AHDEVKDEIVERVHRRVLD 87 (215)
T ss_pred HHHHHHHHhc--CcEEEEEeccCccccCCH----hHHhcCCEEEEeCCC-CcCcCCHHHHHHHHHHHHc
Confidence 3455555556 7888866666543 111 127888988875444 4556666 56778888866
No 189
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=31.83 E-value=1.4e+02 Score=30.44 Aligned_cols=85 Identities=15% Similarity=-0.002 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhcc-CCeEEEEEecCCCCCCChhHHHHH-HHHhccCCCCCCCCCc
Q 005496 101 AKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAARFY-KWFTEGNDRGPWLQQL 178 (694)
Q Consensus 101 A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~-~~~vif~~sTyG~G~~p~na~~F~-~~L~~~~~~~~~l~~~ 178 (694)
++.+++.|.+. |..+..+.+=++..........+.. ++.+||.|++ +.+++ ++.... ..+.++
T Consensus 12 ~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~n---------aV~~~~~~~~~~----~~~~~~ 76 (240)
T PRK09189 12 AERTAARLRAM--GHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAE---------AVRHLAALGERL----LPHLAL 76 (240)
T ss_pred hHHHHHHHHHC--CCceEEecccccccChhhhhhhhcCCcCEEEEECHH---------HHHHHHhcchhh----HHhcCC
Confidence 34555566666 6666655444433211111222333 4666665543 44443 321111 125677
Q ss_pred eEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 179 KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 179 ~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
++++.| +.-.+.|++.|.+.+.
T Consensus 77 ~~~aVG-------------~~Ta~~l~~~G~~~~~ 98 (240)
T PRK09189 77 PLFAVG-------------EATAEAARELGFRHVI 98 (240)
T ss_pred eEEEEc-------------HHHHHHHHHcCCCCCc
Confidence 888777 6667778889987554
No 190
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=31.63 E-value=1.1e+02 Score=31.50 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=33.3
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 005496 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (694)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N~ 341 (694)
|..++|+..++++. ++++++|+.+ ..+.|+||+++.|...+.
T Consensus 4 ~~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 4 PENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred ceEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 45688988888873 6888988854 468999999999986654
No 191
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=31.27 E-value=5.9e+02 Score=27.21 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
+....+|+.+. ...+++++++- +|.|-....+.+.+.+++.|.+.+..
T Consensus 120 ~~~~~~~~~~~------~g~k~vaii~~---d~~~g~~~~~~~~~~~~~~G~~vv~~ 167 (348)
T cd06355 120 IIPAVDWLMSN------KGGKRFYLVGS---DYVYPRTANKILKAQLESLGGEVVGE 167 (348)
T ss_pred HHHHHHHHHhc------cCCCeEEEECC---cchHHHHHHHHHHHHHHHcCCeEEee
Confidence 44566777653 24678999874 34544567788899999999987743
No 192
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.88 E-value=4.1e+02 Score=24.06 Aligned_cols=109 Identities=10% Similarity=-0.054 Sum_probs=62.8
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCC-CcCchhHHhhhccCCe-EEEEEecCCCCCCChhHHHHHHHH
Q 005496 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAARFYKWF 165 (694)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~-d~~~~~~~~~l~~~~~-vif~~sTyG~G~~p~na~~F~~~L 165 (694)
|+.++--|---.+...+...+-+..| .+++++-.. ..++ +.....+.+. +|.+|++. +.....+.++.+.|
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G---~~vi~lG~~vp~e~--~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L 74 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAG---FEVIYTGLRQTPEE--IVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELL 74 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCC---CEEEECCCCCCHHH--HHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHH
Confidence 44556666666666666666654434 556666543 3333 5555555554 55555554 45556778788888
Q ss_pred hccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceee
Q 005496 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (694)
Q Consensus 166 ~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~g 218 (694)
++.. +.+..+.+= |. .+ +...++|+++|...+...+..
T Consensus 75 ~~~~-----~~~i~i~~G--G~-~~-------~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 75 RELG-----AGDILVVGG--GI-IP-------PEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred HhcC-----CCCCEEEEE--CC-CC-------HHHHHHHHHCCCCEEECCCCC
Confidence 7742 333333333 32 22 445688899999888766543
No 193
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=30.81 E-value=6.6e+02 Score=26.62 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=33.0
Q ss_pred hHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
.+....+++.+. .+++++++.. .|.+-....+.+.+.++++|.+.+..
T Consensus 119 ~~~~~~~~~~~~-------~~~~vail~~---d~~~g~~~~~~~~~~~~~~G~~vv~~ 166 (334)
T cd06356 119 QFSTLVPYMMEK-------YGKKVYTIAA---DYNFGQISAEWVRKIVEENGGEVVGE 166 (334)
T ss_pred HHHHHHHHHHHc-------cCCeEEEECC---CchhhHHHHHHHHHHHHHcCCEEEee
Confidence 456677777653 2467888863 44444556788889999999987743
No 194
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=30.35 E-value=97 Score=26.13 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=31.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCC
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD 123 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~ 123 (694)
||+++.++--||+--+|++|.+.+.++ |+++.+....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~--gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKEL--GIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHT--TECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhc--cCceEEEEec
Confidence 589999999999999999999999988 7766655443
No 195
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.20 E-value=7e+02 Score=26.59 Aligned_cols=118 Identities=9% Similarity=0.007 Sum_probs=74.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHH---hhhccC---CeEEEEEecC-------
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYE---EKLKKE---TLAFFMVATY------- 149 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~---~~l~~~---~~vif~~sTy------- 149 (694)
..++.|+....--.+..|++...+.+++- |+.++++.+.+-..++ +++ .++.++ +.+++-.|--
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~-~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~ 108 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDN--GFHSLKDRYPADLSEA-ELLARIDELNRDPKIHGILVQLPLPKHIDSHK 108 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHH-HHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHH
Confidence 35666776666667777777777777766 7777777765432211 122 223222 2344444421
Q ss_pred ------------------------C-CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHH
Q 005496 150 ------------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (694)
Q Consensus 150 ------------------------G-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (694)
| .+-.|-++..-++.|+.... .++|+++.|+|-|+.- ++-+...|
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvViGrs~iV-------GkPla~lL 178 (285)
T PRK14189 109 VIEAIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIGI---PLRGAHAVVIGRSNIV-------GKPMAMLL 178 (285)
T ss_pred HHhhcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcCC---CCCCCEEEEECCCCcc-------HHHHHHHH
Confidence 1 22246667777777776543 3999999999965543 78899999
Q ss_pred HHcCCeEee
Q 005496 205 CKQGGARLV 213 (694)
Q Consensus 205 ~~lGa~~i~ 213 (694)
...||+...
T Consensus 179 ~~~~atVt~ 187 (285)
T PRK14189 179 LQAGATVTI 187 (285)
T ss_pred HHCCCEEEE
Confidence 999998754
No 196
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=30.15 E-value=2.6e+02 Score=30.61 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=49.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCC-eEEEEEecCCCCCCChhHHH
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDGEPTDNAAR 160 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~-~vif~~sTyG~G~~p~na~~ 160 (694)
+-+++.|+|.+-.|... .+.+.+.+... |+.+.+..+..-+.+-...+.++...+ -+||+...+ +.+..
T Consensus 138 ~wk~vaily~~~~g~~~--l~~~~~~~~~~--g~~v~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~------~~~~~ 207 (384)
T cd06393 138 KWRSATVVYDDSTGLIR--LQELIMAPSRY--NIRLKIRQLPTDSDDARPLLKEMKRGREFRIIFDCSH------QMAAQ 207 (384)
T ss_pred CCcEEEEEEeCchhHHH--HHHHHHhhhcc--CceEEEEECCCCchHHHHHHHHHhhcCceEEEEECCH------HHHHH
Confidence 56889999987665443 23455555544 555443322211111122455665443 333333333 56777
Q ss_pred HHHHHhccCCCCCCCCCceEEEEEecCcc
Q 005496 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQ 189 (694)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGds~ 189 (694)
|++.+.+.. +.+..|+ +++.+-.
T Consensus 208 il~qa~~~g-----m~~~~~~-~~~~~~~ 230 (384)
T cd06393 208 ILKQAMAMG-----MMTEYYH-FIFTTLD 230 (384)
T ss_pred HHHHHHHhc-----cccCceE-EEEccCc
Confidence 888887754 4455565 5655543
No 197
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=30.03 E-value=1.7e+02 Score=26.71 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=38.0
Q ss_pred CeEEEEEECCCchHHHH--HHHHHHHHHhhhCCCeeEEE------cCCCCCcCchhHHhhhccCCeEEEEE
Q 005496 84 TKVTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVV------DLDDYAMDDEQYEEKLKKETLAFFMV 146 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~--A~~la~~l~~~~~g~~~~v~------dl~~~d~~~~~~~~~l~~~~~vif~~ 146 (694)
|+++++=++.+|-|..| |+.|.+..++. |+.+++- -.+.++.++ +...++||++.
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~--G~~i~VE~qg~~g~~~~lt~~~------i~~Ad~VIia~ 65 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLE--KWGVKIETQGALGTENRLTDED------IRRADVVLLIT 65 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecCCcCcCCCCCHHH------HHhCCEEEEEe
Confidence 67888889999988765 48888888777 7766532 122333344 77788888874
No 198
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=29.99 E-value=1.1e+02 Score=30.60 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=32.5
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 005496 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (694)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hi~~di~~-~~l~Y~~GD~l~V~p~N 340 (694)
+.++|+..+.++. +++.|.|+.++ ....|+||.|+.|...+
T Consensus 2 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 2 FEATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eeEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 4578888888763 68899998775 35899999999998654
No 199
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=29.89 E-value=5.3e+02 Score=25.10 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=28.9
Q ss_pred hccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCCCCCCceEEEEE
Q 005496 136 LKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFG 184 (694)
Q Consensus 136 l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFG 184 (694)
+...+.++|++|-| ++.-|...+.-++||... -.|+...|..
T Consensus 84 i~~aD~ivFvtPqY-N~gypA~LKNAlD~lyhe------W~gKPalivS 125 (199)
T KOG4530|consen 84 ILEADSIVFVTPQY-NFGYPAPLKNALDWLYHE------WAGKPALIVS 125 (199)
T ss_pred HhhcceEEEecccc-cCCCchHHHHHHHHhhhh------hcCCceEEEE
Confidence 45668899999999 555666667777888653 3455555543
No 200
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.44 E-value=7.3e+02 Score=26.57 Aligned_cols=117 Identities=10% Similarity=0.028 Sum_probs=77.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHh---hhccC---CeEEEEEecC-------
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEE---KLKKE---TLAFFMVATY------- 149 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~---~l~~~---~~vif~~sTy------- 149 (694)
..++.|+....--.+..|++...+.+++- |+.++++.+.+...++ +++. ++.++ +.+++-.|=-
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~~-el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~ 108 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEA--GMASFEHKLPADTSQA-ELLALIARLNADPAIHGILVQLPLPKHLDSEA 108 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHH-HHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHH
Confidence 45788888888888888988888888877 7888888776442222 2332 23222 2455554421
Q ss_pred -----------------C--------CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHH
Q 005496 150 -----------------G--------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (694)
Q Consensus 150 -----------------G--------~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (694)
+ .+-.|-++..-++.|+.... .++|++++|+|= .+.+++-+..+|
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i---~~~Gk~V~viGr-------s~~mG~PmA~~L 178 (296)
T PRK14188 109 VIQAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHG---DLSGLNAVVIGR-------SNLVGKPMAQLL 178 (296)
T ss_pred HHhccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEEcC-------CcchHHHHHHHH
Confidence 1 12246667777777776433 399999999981 245688899999
Q ss_pred HHcCCeEe
Q 005496 205 CKQGGARL 212 (694)
Q Consensus 205 ~~lGa~~i 212 (694)
.+.|++..
T Consensus 179 ~~~g~tVt 186 (296)
T PRK14188 179 LAANATVT 186 (296)
T ss_pred HhCCCEEE
Confidence 99998764
No 201
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=29.14 E-value=1.1e+02 Score=30.67 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=31.2
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 005496 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (694)
Q Consensus 296 ~a~v~~~~~L~~~~~~r~~~hi~~di~~~~-l~Y~~GD~l~V~p~N 340 (694)
.++|+.++++++ +++.+.|+.++.. ..|+||+++.|...+
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 367888887753 6889999877632 789999999998653
No 202
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.99 E-value=1.5e+02 Score=26.82 Aligned_cols=97 Identities=18% Similarity=0.037 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhc----cCCeEEEEEecCCCCCCChhHHHHHHHHhccCCC
Q 005496 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK----KETLAFFMVATYGDGEPTDNAARFYKWFTEGNDR 171 (694)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~----~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~ 171 (694)
+..+++..+.+.|.++ |.++-.++...-..........+. .-++++++++ |+.....++.+...
T Consensus 11 ~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~-------~~~~~~~v~~~~~~--- 78 (116)
T PF13380_consen 11 NPGKFGYRVLRNLKAA--GYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP-------PDKVPEIVDEAAAL--- 78 (116)
T ss_dssp STTSHHHHHHHHHHHT--T-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S--------HHHHHHHHHHHHHH---
T ss_pred CCCChHHHHHHHHHhC--CCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC-------HHHHHHHHHHHHHc---
Confidence 5667889999999886 666666655543222211112222 3467777664 34666677776653
Q ss_pred CCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeeccee
Q 005496 172 GPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 217 (694)
Q Consensus 172 ~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~ 217 (694)
|.+..+|-.| .....+.+.+++.|.+.++|-+.
T Consensus 79 -----g~~~v~~~~g--------~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 79 -----GVKAVWLQPG--------AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp -----T-SEEEE-TT--------S--HHHHHHHHHTT-EEEESS-H
T ss_pred -----CCCEEEEEcc--------hHHHHHHHHHHHcCCEEEeCCcc
Confidence 5778888766 33477888888899988877544
No 203
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.97 E-value=1.2e+02 Score=25.54 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCe--eEEEcCCCC
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAA--VKVVDLDDY 125 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~--~~v~dl~~~ 125 (694)
+++|+.++-.|++.-++.+|.+.+.+. +.. +...++++.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~--~i~~~~~~~~~~~~ 41 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKEL--GIEAEVEHTDLGSA 41 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHC--CCcEEEEEeccccc
Confidence 478999999999999999999999755 543 233445443
No 204
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=28.86 E-value=2.9e+02 Score=26.08 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=62.0
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhh-hCCCeeEEEcCCCCCcCchhHHhhhc-----cC-CeEEEEEecC-CCCCCChhH
Q 005496 87 TVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYAMDDEQYEEKLK-----KE-TLAFFMVATY-GDGEPTDNA 158 (694)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~-~~g~~~~v~dl~~~d~~~~~~~~~l~-----~~-~~vif~~sTy-G~G~~p~na 158 (694)
+++||+..+--+...++|.+.+... +..+.+..++..+.+..+ ++..+. .. ++|++--+.. .+....+..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~s~slF~~~klvii~~~~~l~~~~~~~~~ 78 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDDIDE--LLEELQSPSLFGDKKLVIIKNAPFLKDKLKKKEI 78 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH---HTTTSTTTTSSSSEEEEEEE-----TT-S-TTHH
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCcHHH--HHHHHhcCCccCCCeEEEEecCccccccccHHHH
Confidence 5899999999999999999986543 111223333444433322 223322 23 3444444433 344455667
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHHHHH
Q 005496 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 238 (694)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~ 238 (694)
..|.+++... ..-.+-||-.. . .... .+.+-+.+++.|.-.-++.. .+.++..|..+....
T Consensus 79 ~~l~~~l~~~-------~~~~~lii~~~-~---~~~~-~~k~~k~l~~~~~~~~~~~~-------~~~~~~~~i~~~~~~ 139 (172)
T PF06144_consen 79 KALIEYLSNP-------PPDCILIIFSE-E---KLDK-RKKLYKALKKQAIVIECKKP-------KEQELPRWIKERAKK 139 (172)
T ss_dssp HHHHHHTTT---------SSEEEEEEES-----S--H-HHHHHHHHTTTEEEEEE-----------TTTHHHHHHHHHHH
T ss_pred HHHHHHHhCC-------CCCEEEEEEeC-C---chhh-hhhHHHHHhcccceEEecCC-------CHHHHHHHHHHHHHH
Confidence 7787777653 23344555433 1 1122 23356666664432222211 346778888765544
No 205
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=28.82 E-value=1e+02 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.9
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCe
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~ 116 (694)
+++++.++-.|++.-++++|.+.+.+. +..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~--~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKEL--GIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHC--CCe
Confidence 367888888899999999999999876 553
No 206
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.41 E-value=77 Score=27.78 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=28.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEE
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~ 120 (694)
+++|+++.|+--+|+ -+++.+.+.+.++ |+++++.
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~--gi~~~v~ 37 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEY--GVPVKIA 37 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHC--CCcEEEE
Confidence 568999999988866 6999999999988 7776554
No 207
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=28.12 E-value=1.3e+02 Score=30.46 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=33.2
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 005496 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (694)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~-l~Y~~GD~l~V~p~N 340 (694)
++.++|...+++++ +++.+.|..+... ..|+||.++.|...+
T Consensus 6 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 6 DFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 56788998888873 6888888876532 589999999998654
No 208
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=28.11 E-value=75 Score=31.77 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=26.3
Q ss_pred CCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEe
Q 005496 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (694)
Q Consensus 174 ~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (694)
.++|++++|.|+|+ +++.+-+.|.+.|++.+
T Consensus 25 ~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 25 SLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 48999999999763 57888899999999766
No 209
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=27.79 E-value=3e+02 Score=30.12 Aligned_cols=91 Identities=9% Similarity=0.106 Sum_probs=53.4
Q ss_pred CCCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCCeeEEEcCCCCC-cCchhHHhhhccCCeEEEEEecCCCCCCChh
Q 005496 82 GKTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDN 157 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~---~A~~la~~l~~~~~g~~~~v~dl~~~d-~~~~~~~~~l~~~~~vif~~sTyG~G~~p~n 157 (694)
+-+++.|+|.+.. ..+. .++.|.+.++.. |+.+......+.+ .+-...+.++.+..-+|+++..+ +.
T Consensus 136 ~W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~--gi~v~~~~~~~~~~~d~~~~l~~ik~~~rvii~~~~~------~~ 206 (387)
T cd06386 136 HWRSALLVYEDDK-QERNCYFTLEGVHHVFQEE--GYHMSIYPFDETKDLDLDEIIRAIQASERVVIMCAGA------DT 206 (387)
T ss_pred CCeEEEEEEEcCC-CCccceehHHHHHHHHHhc--CceEEEEecCCCCcccHHHHHHHHHhcCcEEEEecCH------HH
Confidence 5678999986432 2232 277777777766 6666554332211 12223566666555555555544 57
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEEEec
Q 005496 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLG 186 (694)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~avFGlG 186 (694)
+..|++...+.. +.+..|..+.++
T Consensus 207 ~~~ll~~A~~~g-----m~~~~yv~i~~d 230 (387)
T cd06386 207 IRSIMLAAHRRG-----LTSGDYIFFNIE 230 (387)
T ss_pred HHHHHHHHHHcC-----CCCCCEEEEEEe
Confidence 788888877654 445567666664
No 210
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.42 E-value=88 Score=28.02 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEE
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~ 120 (694)
+++|+++.|+-.+|+ -+|+.+.+.++++ |+.+++.
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~--gi~~~i~ 35 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQ--GKDIEVD 35 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHC--CCceEEE
Confidence 357999999988666 9999998888888 7776553
No 211
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=27.33 E-value=91 Score=34.26 Aligned_cols=78 Identities=23% Similarity=0.180 Sum_probs=49.7
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCch-hHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005496 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-QYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (694)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~-~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (694)
++..-++|-|||+++.+.+.|+.|.+ . |+.+.++++..+.+=+. .+...+.+.+.++++==.+-.|.. +.
T Consensus 232 ~G~di~Iia~Gs~~~~aleAa~~L~~----~--Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGl---G~ 302 (355)
T PTZ00182 232 EGKDVTIVGYGSQVHVALKAAEELAK----E--GISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGI---GA 302 (355)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHHh----C--CCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCH---HH
Confidence 44555678899999999888887743 4 78888888776655443 245556677777776444434432 23
Q ss_pred HHHHHHhc
Q 005496 160 RFYKWFTE 167 (694)
Q Consensus 160 ~F~~~L~~ 167 (694)
...+++.+
T Consensus 303 ~Va~~l~e 310 (355)
T PTZ00182 303 EIAAQIME 310 (355)
T ss_pred HHHHHHHH
Confidence 34455544
No 212
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=27.29 E-value=84 Score=31.82 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=30.5
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCCC---CccCCCCeEEEecc
Q 005496 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG---ITYETGDHVGVYVE 339 (694)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hi~~di~~~~---l~Y~~GD~l~V~p~ 339 (694)
+.++|+..+.+++ +++.++|..+... +.|+||+++.|.++
T Consensus 2 ~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 2 HPLTVAEVVRETA-----DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred ceEEEEEEEecCC-----CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 3567888887753 6888888876532 58999999999976
No 213
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.91 E-value=5.1e+02 Score=29.22 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhccCCCCCCC
Q 005496 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWL 175 (694)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l 175 (694)
+++++|++|+++|++. |+. .++++||+|. -+....-..+.|.+
T Consensus 320 ~a~~~g~eIa~~Lk~d--gVD-------------------------AvILtstCgt--Ctrcga~m~keiE~-------- 362 (431)
T TIGR01917 320 NSKQFAKEFSKELLAA--GVD-------------------------AVILTSTUGT--CTRCGATMVKEIER-------- 362 (431)
T ss_pred HHHHHHHHHHHHHHHc--CCC-------------------------EEEEcCCCCc--chhHHHHHHHHHHH--------
Confidence 4667777777777654 321 4566778744 34556656677765
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec-----ceeecCCCCchHHHHHHHHHHHHHHHhh
Q 005496 176 QQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP-----LGLGDDDQCIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 176 ~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~-----~g~gD~~~~~e~~~~~W~~~l~~~L~~~ 242 (694)
.|......+ + +-.--+..|+.|+.| .-+||-....++...--..-+-.+|..+
T Consensus 363 ~GIPvV~i~----~----------~~pI~~~vGanRiv~~~~i~~PlGnp~l~~~~e~~~rr~~v~~AL~aL 420 (431)
T TIGR01917 363 AGIPVVHIC----T----------VTPIALTVGANRIIPAIAIPHPLGDPALDAAEEKALRRKIVEKALKAL 420 (431)
T ss_pred cCCCEEEEe----e----------chhHHHhcCCCceecCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 366666665 2 223345689999987 3456655555555444445566666554
No 214
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=25.72 E-value=79 Score=30.05 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=36.8
Q ss_pred ceEEEEEecCcch--hHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHH
Q 005496 178 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (694)
Q Consensus 178 ~~~avFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W 231 (694)
.+++|+-.||..+ .-++..+..+.++|++.|++........||.+.+.+.+..|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 3688988899776 46777788899999999998665444455533333444333
No 215
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.68 E-value=41 Score=28.00 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhh
Q 005496 85 KVTVFYGTQTGTAEGFAKALAEEIKAR 111 (694)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~ 111 (694)
+++|+.++-.|++.-++.+|.+.+...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~ 28 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEI 28 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCc
Confidence 689999999999999999999888543
No 216
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=25.63 E-value=1.8e+02 Score=29.63 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=32.2
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCC-C-CccCCCCeEEEeccCC
Q 005496 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-G-ITYETGDHVGVYVENC 341 (694)
Q Consensus 295 ~~a~v~~~~~L~~~~~~r~~~hi~~di~~~-~-l~Y~~GD~l~V~p~N~ 341 (694)
-.++|++.+.++. ++++++|+.++. . +.|+||+++.|...++
T Consensus 7 ~~~~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 3567888887763 689999987653 2 7899999999996553
No 217
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=24.91 E-value=2e+02 Score=30.24 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCC
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY 125 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~ 125 (694)
..++|.|+|.+.+-++....+.+.+.+... |+++..+.+.+.
T Consensus 130 ~~k~igvl~~~~~~~~~~~~~~~~~~a~~~--g~~l~~~~v~~~ 171 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNSVAQIEQLRKAAKKL--GIELVEIPVPSS 171 (294)
T ss_dssp T--EEEEEEETT-HHHHHHHHHHHHHHHHT--T-EEEEEEESSG
T ss_pred CCCEEEEEecCCCccHHHHHHHHHHHHHHc--CCEEEEEecCcH
Confidence 568899999999988888888888888766 677666655543
No 218
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=24.87 E-value=7.9e+02 Score=26.07 Aligned_cols=136 Identities=9% Similarity=0.028 Sum_probs=67.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhh-hCCCeeEEEcCCCCC-cCchhHHhh-----hc-cCCeEEEEEecCCCCCCC
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYA-MDDEQYEEK-----LK-KETLAFFMVATYGDGEPT 155 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~-~~g~~~~v~dl~~~d-~~~~~~~~~-----l~-~~~~vif~~sTyG~G~~p 155 (694)
+.++++||....--+.+++.|.+.+... ...+.+..+|..+.+ ..+ ++.. +. ..++|++--+.+..+...
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~~~~--~~~~~~t~pff~~~rlVvv~~~~~~~~~~~ 78 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQAIQ--ALNEAMTPPFGSGGRLVWLKNSPLCQGCSE 78 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchHHHH--HHHHhcCCCCCCCceEEEEeCchhhccCCH
Confidence 4689999999999999999888766321 012334444444433 111 2322 22 233444444444333333
Q ss_pred hhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHH
Q 005496 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (694)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l 235 (694)
+....+.+++.+. ..-.+-||-..+.. . ..+++.+.+++.|...-... .. .-.++.+..|..+.
T Consensus 79 ~~~~~L~~~l~~~-------~~~~~li~~~~~~~----d-~r~k~~k~l~k~~~~~~~~~--~~--~~~~~~l~~~i~~~ 142 (326)
T PRK07452 79 ELLAELERTLPLI-------PENTHLLLTNTKKP----D-GRLKSTKLLQKLAEEKEFSL--IP--PWDTEGLKQLVERT 142 (326)
T ss_pred HHHHHHHHHHcCC-------CCCcEEEEEeCCCc----c-hHHHHHHHHHHceeEEEecC--CC--cccHHHHHHHHHHH
Confidence 4455677777652 22345555422111 1 12455666776654322211 11 11235578887654
Q ss_pred HH
Q 005496 236 WP 237 (694)
Q Consensus 236 ~~ 237 (694)
..
T Consensus 143 ~~ 144 (326)
T PRK07452 143 AQ 144 (326)
T ss_pred HH
Confidence 43
No 219
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=24.35 E-value=2e+02 Score=34.26 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=39.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEE
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~ 145 (694)
+..-++|-||++...|.+.|+.|++ . |+.++|+|+....+-|.+++..+.+...++++
T Consensus 504 G~ditIva~G~~v~~aleAa~~L~~----~--Gi~v~VId~~~lkPlD~~~i~sv~k~~~vvvv 561 (641)
T PRK12571 504 GPDVAILSVGAHLHECLDAADLLEA----E--GISVTVADPRFVKPLDEALTDLLVRHHIVVIV 561 (641)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHh----c--CCCEEEEEcCcCCCcCHHHHHHHhhhCCEEEE
Confidence 4455667788888888887776643 5 78899999976555555566666555444444
No 220
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=24.32 E-value=3e+02 Score=32.79 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=49.1
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccC-CeEEEEEecCCCCCCChhHH
Q 005496 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNAA 159 (694)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~-~~vif~~sTyG~G~~p~na~ 159 (694)
++..-.+|-||++...|.+.|+.|++ . |+.++|+|+....+-|.+.+.++.+. +.+|.+=... .|. -+.
T Consensus 543 eG~dvtIva~G~~v~~Al~AA~~L~~----~--GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~-~GG---~Gs 612 (641)
T PLN02234 543 DGERVALLGYGSAVQRCLEAASMLSE----R--GLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGS-IGG---FGS 612 (641)
T ss_pred eCCCEEEEEecHHHHHHHHHHHHHHh----c--CCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCC-CCc---HHH
Confidence 34445667799999999988887754 4 78899999887665554455556554 4444443222 233 234
Q ss_pred HHHHHHhcc
Q 005496 160 RFYKWFTEG 168 (694)
Q Consensus 160 ~F~~~L~~~ 168 (694)
...++|.+.
T Consensus 613 ~Va~~l~e~ 621 (641)
T PLN02234 613 HVVQFLALD 621 (641)
T ss_pred HHHHHHHHc
Confidence 456666654
No 221
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.28 E-value=63 Score=30.45 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=36.1
Q ss_pred eEEEEEecCcch---------hHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHH
Q 005496 179 KFGVFGLGNRQY---------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (694)
Q Consensus 179 ~~avFGlGds~Y---------~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~ 232 (694)
+++|+-.||.-+ .-++..+..+.++|++.|++...-....|+.+.+.+.+++|.
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~ 64 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV 64 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 567777777554 235666789999999999987654445565444555555553
No 222
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=23.66 E-value=1.7e+02 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.6
Q ss_pred CeEEEEEECCCchHHHH--HHHHHHHHHhhhCCCeeEEEcCCC
Q 005496 84 TKVTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVVDLDD 124 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~--A~~la~~l~~~~~g~~~~v~dl~~ 124 (694)
|-|.|++.|.||+.+-- -+++..-|.+. ++..+.+|+..
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~--kI~fe~vDIa~ 41 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAK--KIPFEEVDIAM 41 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHT--T--EEEEETTT
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHc--CCCcEEEeCcC
Confidence 34889999999997543 34566667777 78888898886
No 223
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=23.64 E-value=5.7e+02 Score=27.64 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=51.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEE-cCCCC--CcCchhHHhhhccCCeEEEEEecCCCCCCChhH
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~-dl~~~--d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na 158 (694)
+.+++.|+|....+-....++.+.+.+++. |..+... .+... ..+-...+.++....-+|+++... +.+
T Consensus 136 ~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~--G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~vii~~~~~------~~~ 207 (389)
T cd06352 136 NWHVAVVVYSDDSENCFFTLEALEAALREF--NLTVSHVVFMEDNSGAEDLLEILQDIKRRSRIIIMCGSS------EDV 207 (389)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHHHHhc--CCeEEEEEEecCCccchhHHHHHHHhhhcceEEEEECCH------HHH
Confidence 346788888777656667788888888766 5544321 12211 111122455565444344443332 567
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEEEe
Q 005496 159 ARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (694)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~avFGl 185 (694)
..|++.+.+.. +.+..+-++|.
T Consensus 208 ~~~l~q~~~~g-----~~~~~~~~i~~ 229 (389)
T cd06352 208 RELLLAAHDLG-----LTSGDYVFILI 229 (389)
T ss_pred HHHHHHHHHcC-----CCCCcEEEEEE
Confidence 77888887753 44456777764
No 224
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=23.63 E-value=3.5e+02 Score=24.43 Aligned_cols=97 Identities=23% Similarity=0.355 Sum_probs=54.4
Q ss_pred CeEEEecCccchhhHHHHHHHHHHhhcCCCCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCccccc
Q 005496 545 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ 624 (694)
Q Consensus 545 piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq 624 (694)
-++|+|=-|++--+.++|++.- ...+...|+-..+.. |..+ |.. ....++... .|++. ... .
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp-------~~~~~~v~iev~~~~-d~~~---l~~----~~~~~v~wv-~r~~~-~~~-~ 64 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALP-------ADAPGTVFIEVPDEA-DRQP---LPA----PAGVEVTWV-PRDGP-AAQ-G 64 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS--------TT-EEEEEEEESSGG-G--------------TEEEEEEE-E-SS---TT--
T ss_pred eEEEEeccccHHHHHHHHHhCC-------CCCeEEEEEEECChH-hccc---CCC----CCCCEEEEE-eCCCC-Cch-H
Confidence 4789999999999999998752 346677777777766 5333 222 333344433 45443 000 0
Q ss_pred chhHHhHHHHHhcc--cCCcEEEEeCCccchHHHHHHHHHH
Q 005496 625 HKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHT 663 (694)
Q Consensus 625 ~~l~~~~~~l~~ll--~~~~~iYvCG~a~~M~~~V~~~L~~ 663 (694)
..+ .+.+.++. ..+.+++++|- ..+++.+++.|++
T Consensus 65 ~~l---~~al~~~~~~~~~~~vW~AgE-~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 65 SAL---ADALRDLPLPAGDGYVWVAGE-ASAVRALRRHLRE 101 (119)
T ss_dssp HHH---HHHHTTS---SS-EEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHH---HHHHHHhhccCCCeEEEEEec-HHHHHHHHHHHHH
Confidence 111 11122222 35789999999 7899999888774
No 225
>PTZ00110 helicase; Provisional
Probab=23.54 E-value=6.3e+02 Score=29.38 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=61.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCC-eEEEEEecCCCC--------
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDG-------- 152 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~-~vif~~sTyG~G-------- 152 (694)
...+++||..| .+-|+.|++.|... ++.+..+.-+....+.+.++..+.+.+ .+++.+...+.|
T Consensus 376 ~~~k~LIF~~t-----~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~ 448 (545)
T PTZ00110 376 DGDKILIFVET-----KKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKY 448 (545)
T ss_pred cCCeEEEEecC-----hHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCE
Confidence 45577777644 45566666677655 555544422222222233556565544 456666666666
Q ss_pred ----CCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcC
Q 005496 153 ----EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 208 (694)
Q Consensus 153 ----~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lG 208 (694)
++|.+...|+..+-... + .--+|.-+..|-- .-...++.+-+.|++.+
T Consensus 449 VI~~d~P~s~~~yvqRiGRtG-R-~G~~G~ai~~~~~------~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 449 VINFDFPNQIEDYVHRIGRTG-R-AGAKGASYTFLTP------DKYRLARDLVKVLREAK 500 (545)
T ss_pred EEEeCCCCCHHHHHHHhcccc-c-CCCCceEEEEECc------chHHHHHHHHHHHHHcc
Confidence 67888888877775421 1 1124555555532 22345677777777765
No 226
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=23.17 E-value=1.4e+02 Score=29.95 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=29.0
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 005496 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (694)
Q Consensus 298 ~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N 340 (694)
+|+..+.++ .++++++|..++ .+.|+||.++.|...+
T Consensus 2 ~v~~~~~~t-----~~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 2 KVESIEPLN-----DDVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred EEEEEEeCC-----CceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 456666655 368999998765 7899999999999765
No 227
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=22.82 E-value=2.8e+02 Score=24.30 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=33.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCC--eeEEEcCCCCC
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKA--AVKVVDLDDYA 126 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~--~~~v~dl~~~d 126 (694)
+.+|+.+.|+-=||+--++..+.+.|+++ |+ .+.....+++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~--gi~~~~~~~~v~~~~ 44 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKEL--GIDVDVEQCAVDEIK 44 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHc--CCCceeeeEEecccc
Confidence 46899999999999999999999999988 66 44455555554
No 228
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=22.79 E-value=6e+02 Score=27.25 Aligned_cols=123 Identities=13% Similarity=0.245 Sum_probs=65.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc--hhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~--~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (694)
++++.||+|+. ..++|+.|++++. ++..-+.+..|...+ .++.+++.. .-|.++-|..|. ..|+.-+
T Consensus 1 ~~~i~lf~g~s---hp~La~~I~~~lg-----i~l~~v~~kkf~nge~~v~i~esvR~-~dV~iiqsgsg~--ind~lmE 69 (316)
T KOG1448|consen 1 MKNIKLFSGDS---HPELAERIAARLG-----IELGKVNLKKFSNGETSVQIGESVRG-EDVYIIQSGSGP--INDNLME 69 (316)
T ss_pred CCceEEEcCCC---CHHHHHHHHHHhC-----CCcceeeeEEccCCcEEEeccccccc-CcEEEeccCCCc--chHHHHH
Confidence 46788998764 5788888888773 222222233332211 001122222 345566666644 5565433
Q ss_pred HHHHHhccCCCCCCCCCceE-EE---EEecCcch---hHHHHHHHHHHHHHHHcCCeEeecceeecC
Q 005496 161 FYKWFTEGNDRGPWLQQLKF-GV---FGLGNRQY---EHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (694)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~-av---FGlGds~Y---~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~ 220 (694)
.+-.+..... ..-+++ +| |+.+-+.= .|--..||.+.+.|...|+..+.-..+-..
T Consensus 70 LLI~I~ac~~----asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa~ 132 (316)
T KOG1448|consen 70 LLIMINACKR----ASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHAS 132 (316)
T ss_pred HHHHHHhcch----hhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccch
Confidence 3333333221 222232 22 56443332 356678999999999999998876655443
No 229
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=22.70 E-value=1.4e+02 Score=32.97 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhC-CCeeEEEcCC
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYE-KAAVKVVDLD 123 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~-g~~~~v~dl~ 123 (694)
.+++|+|+.+|..|-=...|++|++.+..+.+ +..+.++|+=
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~ 46 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLF 46 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehH
Confidence 46789999999877778999999999987622 2445555543
No 230
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=22.54 E-value=1.6e+02 Score=31.76 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=33.4
Q ss_pred hhHHHHhc-CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcC
Q 005496 74 DDEADIAA-GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDL 122 (694)
Q Consensus 74 ~~~~~~~~-~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl 122 (694)
+.++++.. ...-|+|+|| -+.++..|+.|++.+.++|+++.+.+++=
T Consensus 254 ~ll~~l~~~~~elvTi~~G--~~~~~~~a~~l~~~l~~~~p~~eve~~~G 301 (313)
T PF13684_consen 254 KLLEKLLDEDGELVTIYYG--EDVSEEEAEALAEFLEEKYPDVEVEVYDG 301 (313)
T ss_pred HHHHHhhccCCeEEEEEec--CCCCHHHHHHHHHHHHHHhCCeEEEEEEC
Confidence 33444433 4556999999 45555589999999998988787777643
No 231
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=22.29 E-value=1.5e+02 Score=32.52 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=54.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchh-HHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~-~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (694)
+..-.+|-||++...+.+.|+.|. ++ |++++|+|+....+=|.+ +...+.+.+.+|++=-.+-.|.. ...
T Consensus 228 G~dvtIia~G~~v~~Al~Aa~~L~----~~--GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGl---Gs~ 298 (356)
T PLN02683 228 GKDVTIVAFSKMVGYALKAAEILA----KE--GISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGV---GAE 298 (356)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHH----hc--CCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCH---HHH
Confidence 444556668888888777777664 35 788999998877655533 44555667777776444433432 233
Q ss_pred HHHHHhccCCCCCCCCCceEEEEEecC
Q 005496 161 FYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (694)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGlGd 187 (694)
..+++.+...+ +-..++.-+|+=|
T Consensus 299 Va~~l~e~~f~---~~~~~v~rlg~~d 322 (356)
T PLN02683 299 ICASVVEESFD---YLDAPVERIAGAD 322 (356)
T ss_pred HHHHHHHhchh---ccCCCeEEeccCC
Confidence 44555443210 1123555666533
No 232
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=22.17 E-value=1.9e+02 Score=31.72 Aligned_cols=60 Identities=20% Similarity=0.047 Sum_probs=40.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCch-hHHhhhccCCeEEEEEec
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-QYEEKLKKETLAFFMVAT 148 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~-~~~~~l~~~~~vif~~sT 148 (694)
..-++|.|||+++++++.++.|.+ + |+++.++++..+.+=+. .+...+.+.+.|+++==+
T Consensus 247 ad~~iva~Gs~~~~a~eA~~~L~~----~--Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n 307 (352)
T PRK07119 247 AELVLVAYGTSARIAKSAVDMARE----E--GIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS 307 (352)
T ss_pred CCEEEEEcCccHHHHHHHHHHHHH----c--CCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC
Confidence 345778899999999988877753 5 77788887765544332 244556677776666443
No 233
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=22.13 E-value=3.4e+02 Score=29.02 Aligned_cols=106 Identities=14% Similarity=0.043 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc--hhHHhhhcc-CC-eEEEEEec----C-CCCCCChhHHHHHHHHh
Q 005496 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKK-ET-LAFFMVAT----Y-GDGEPTDNAARFYKWFT 166 (694)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~--~~~~~~l~~-~~-~vif~~sT----y-G~G~~p~na~~F~~~L~ 166 (694)
+...+|++|++.+.+. |+.+...+-.+...|. ..-+.-+.+ .+ .+|-++.. + +...++.....|=+.|.
T Consensus 96 gd~eLA~~i~~~~~~~--Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~ 173 (294)
T cd07372 96 VDVELAEACCEEGRKA--GLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATR 173 (294)
T ss_pred CCHHHHHHHHHHHHHC--CCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCCHHHHHHHHHHHH
Confidence 5788999999999887 7776653333332222 001111222 22 23333321 1 11222333333444455
Q ss_pred ccCCCCCCCCCceEEEEEecCcchhH----------HHH------HHHHHHHHHHHc
Q 005496 167 EGNDRGPWLQQLKFGVFGLGNRQYEH----------FNK------IGIVLDEELCKQ 207 (694)
Q Consensus 167 ~~~~~~~~l~~~~~avFGlGds~Y~~----------f~~------~~k~ld~~L~~l 207 (694)
+... -.+++++++|+||-+... |.. .++.+|+++.++
T Consensus 174 ~al~----~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~ 226 (294)
T cd07372 174 EAIR----KTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIEL 226 (294)
T ss_pred HHHH----hcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHH
Confidence 4111 136899999999887643 222 566777766553
No 234
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.10 E-value=1.3e+02 Score=29.30 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.9
Q ss_pred CCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 173 ~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
..+.|++++|+|+ +..++.+.++|+.+|++.++
T Consensus 32 ~~l~g~tvgIiG~--------G~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 32 RELRGKTVGIIGY--------GRIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp S-STTSEEEEEST--------SHHHHHHHHHHHHTT-EEEE
T ss_pred cccCCCEEEEEEE--------cCCcCeEeeeeecCCceeEE
Confidence 4599999999994 56789999999999998764
No 235
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=21.98 E-value=4.5e+02 Score=28.82 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCC-cCchhHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d-~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (694)
+-++++|+|.+..|- ..++.|.+.+... |..+....+..++ .+-...+.++...+.-.++...+ ++.+..
T Consensus 123 ~wk~vaiiYd~~~~~--~~lq~l~~~~~~~--g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~-----~~~~~~ 193 (371)
T cd06388 123 EWNRFVFLYDTDRGY--SILQAIMEKAGQN--GWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCE-----IERLQN 193 (371)
T ss_pred CceEEEEEecCCccH--HHHHHHHHhhHhc--CCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECC-----HHHHHH
Confidence 568899999988877 4477777777766 5554432222221 11122455565444333333333 257888
Q ss_pred HHHHHhccC
Q 005496 161 FYKWFTEGN 169 (694)
Q Consensus 161 F~~~L~~~~ 169 (694)
|++...+..
T Consensus 194 il~qa~~~g 202 (371)
T cd06388 194 ILEQIVSVG 202 (371)
T ss_pred HHHHHHhcC
Confidence 888887754
No 236
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.91 E-value=9.8e+02 Score=25.46 Aligned_cols=118 Identities=8% Similarity=0.046 Sum_probs=77.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc--hhHHhhhccC---CeEEEEEecC--------
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (694)
..++.|+....--.+..|++...+.+++- |+.++++.+.+...++ ...+.++.++ +.+++-.|=-
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i 108 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQV--GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNV 108 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHH
Confidence 45677888788888888998888888877 7888888887543322 1122333222 2444444421
Q ss_pred -----------------------C--CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHH
Q 005496 150 -----------------------G--DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (694)
Q Consensus 150 -----------------------G--~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (694)
| .+-.|.++..-++.|+.... .++|+++.|+|=+ +-.+|=+...|
T Consensus 109 ~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i---~l~Gk~vvViGrS-------~~VGkPla~lL 178 (282)
T PRK14180 109 IYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI---KTEGAYAVVVGAS-------NVVGKPVSQLL 178 (282)
T ss_pred HhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHH
Confidence 2 22356677777777776543 3899999999832 23478888888
Q ss_pred HHcCCeEe
Q 005496 205 CKQGGARL 212 (694)
Q Consensus 205 ~~lGa~~i 212 (694)
.+.||+..
T Consensus 179 ~~~~ATVt 186 (282)
T PRK14180 179 LNAKATVT 186 (282)
T ss_pred HHCCCEEE
Confidence 88898764
No 237
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.89 E-value=77 Score=28.77 Aligned_cols=58 Identities=26% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhh-hccCCeEEEE
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK-LKKETLAFFM 145 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~-l~~~~~vif~ 145 (694)
+..-++|-|||+...+.+.|+.|.+ + |+.+.++|+.-..+-+.+.+.+ +.+.+.++++
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~----~--Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvv 67 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEE----E--GIKAGVIDLRTIKPFDEEALLESLKKTGRVVVV 67 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHH----T--TCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHS
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHH----c--CCceeEEeeEEEecccccchHHHHHHhcccccc
Confidence 3445677788888888777766655 5 7888888876665544344444 4444444444
No 238
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=21.78 E-value=2e+02 Score=31.97 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=41.5
Q ss_pred hccCCeEEEEEecCCCCCCChhHHHHHHHHhcc-CCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEee
Q 005496 136 LKKETLAFFMVATYGDGEPTDNAARFYKWFTEG-NDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (694)
Q Consensus 136 l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~-~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (694)
+.+..+.+.-+|-+ + ....|+.-+-.|... ...+..+.|++++|+|+ +.+++.+.++|+.+|.+.++
T Consensus 77 ~~~~gI~v~napg~-n--a~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~--------G~IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 77 LKQAGIGFSAAPGC-N--AIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGV--------GNVGRRLQARLEALGIKTLL 144 (378)
T ss_pred HHHCCCEEEECCCc-C--chHHHHHHHHHHHHHhccCCCCcCCCEEEEECc--------CHHHHHHHHHHHHCCCEEEE
Confidence 44445555555544 2 223444333333321 11234589999999995 45789999999999998764
No 239
>PRK08105 flavodoxin; Provisional
Probab=21.66 E-value=5.7e+02 Score=24.13 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=51.9
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhccCCC--------CCCC--CCceEEEEEe---cCcch-hHHHHHHHHHHHHHH
Q 005496 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDR--------GPWL--QQLKFGVFGL---GNRQY-EHFNKIGIVLDEELC 205 (694)
Q Consensus 140 ~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~--------~~~l--~~~~~avFGl---Gds~Y-~~f~~~~k~ld~~L~ 205 (694)
++.||..|++|+-+ .-|+.+.+.+.+...+ -..+ ..-...||++ |+... +..-.+-..+.+...
T Consensus 3 ~i~I~YgS~tGnte--~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~ 80 (149)
T PRK08105 3 KVGIFVGTVYGNAL--LVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAG 80 (149)
T ss_pred eEEEEEEcCchHHH--HHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCc
Confidence 46788788886544 4444455555432111 0112 2235677776 22222 221222222222212
Q ss_pred HcCCeEeecceeecCCCCchHHHHHHHHHHHHHHHhh
Q 005496 206 KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (694)
Q Consensus 206 ~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l~~~L~~~ 242 (694)
.+...+..=.|+||.. + +.|..+...+-..|.++
T Consensus 81 ~l~~~~~avfGlGds~--Y-~~fc~~~~~ld~~l~~l 114 (149)
T PRK08105 81 YQPNLRYGVIALGDSS--Y-DNFCGAGKQFDALLQEQ 114 (149)
T ss_pred ccCCCEEEEEeeecCC--H-HHHHHHHHHHHHHHHHC
Confidence 3556677778999763 4 78999988877777764
No 240
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=21.58 E-value=3.4e+02 Score=28.24 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhcc---CCeEEEEEecCCCCCCChhHHHHH---HHHhccC
Q 005496 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK---ETLAFFMVATYGDGEPTDNAARFY---KWFTEGN 169 (694)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~---~~~vif~~sTyG~G~~p~na~~F~---~~L~~~~ 169 (694)
....+|++|.+.+.+. |+.+....--..|-.----+.-+.. ..+|-+.+.+.... -.+.++.+ +.|.+..
T Consensus 94 g~~~la~~i~~~l~~~--g~~~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p--~~~~~~~~~lG~aL~~~~ 169 (272)
T PF02900_consen 94 GDPELAERIAEHLRKA--GFDVAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPP--SPSPERHYRLGRALRKAR 169 (272)
T ss_dssp B-HHHHHHHHHHHHHT--TS-EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS---TS-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCEEeccCcCCccccceeeeecccccCcceeeeEeeccccc--CCCHHHHHHHHHHHHHHH
Confidence 4578999999999887 7766542111111111000111222 12333444442222 23334444 4455532
Q ss_pred CCCCCCCCceEEEEEecCcch-------hHHHH-HHHHHHHHHHHc
Q 005496 170 DRGPWLQQLKFGVFGLGNRQY-------EHFNK-IGIVLDEELCKQ 207 (694)
Q Consensus 170 ~~~~~l~~~~~avFGlGds~Y-------~~f~~-~~k~ld~~L~~l 207 (694)
.+ . +.+++|+|+|+.+. ..+.. .++.+|+++.++
T Consensus 170 ~~---~-~~rv~vi~SG~lsH~l~~~~~~~~~~~~~~~fD~~i~~~ 211 (272)
T PF02900_consen 170 ES---S-DERVAVIASGGLSHNLRDPRPGGYDPPWAEEFDEWILDA 211 (272)
T ss_dssp HT---S-GGCEEEEEEE-SS--TTSTTTTS---CHHHHHHHHHHCC
T ss_pred Hh---c-CCCEEEEEeCCcccCCCcccccchhhHhHHHHHHHHHHH
Confidence 11 2 78999999998875 12232 567777777664
No 241
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=21.57 E-value=5.3e+02 Score=31.02 Aligned_cols=91 Identities=16% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccC-CeEEEEEecCCCCCCChhHHH
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNAAR 160 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~-~~vif~~sTyG~G~~p~na~~ 160 (694)
+..-.+|.||++...|.+.|+.|++ . |+.++|+|+....+-|.+++.++.+. +.+|.+=..+- |.. ...
T Consensus 543 G~dvtIva~G~~v~~Al~Aa~~L~~----~--GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~---Gs~ 612 (677)
T PLN02582 543 GERVALLGYGTAVQSCLAAASLLER----H--GLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGF---GSH 612 (677)
T ss_pred CCCEEEEeecHHHHHHHHHHHHHHh----c--CCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcH---HHH
Confidence 3444566799988888888877643 5 78899999988766665555555544 45554433332 332 233
Q ss_pred HHHHHhccCCCCCCCCCceEEEEEe
Q 005496 161 FYKWFTEGNDRGPWLQQLKFGVFGL 185 (694)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~avFGl 185 (694)
..+++.+.... ....++--+|+
T Consensus 613 va~~l~~~~~~---~~~~~v~~~Gi 634 (677)
T PLN02582 613 VAQFMALDGLL---DGKLKWRPLVL 634 (677)
T ss_pred HHHHHHhcCCc---cCCceeEEecC
Confidence 44555543210 11245555665
No 242
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=21.57 E-value=7e+02 Score=26.06 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeec
Q 005496 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (694)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (694)
..+..+.+++.+. ...++++++.. | +.+.......+.+.+++.|.+.+..
T Consensus 120 ~~~~~~~~~~~~~------~g~~~v~iv~~-~--~~~g~~~~~~~~~~~~~~G~~vv~~ 169 (343)
T PF13458_consen 120 QQAAALAEYLAKK------LGAKKVAIVYP-D--DPYGRSLAEAFRKALEAAGGKVVGE 169 (343)
T ss_dssp HHHHHHHHHHHHT------TTTSEEEEEEE-S--SHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHH------cCCcEEEEEec-C--chhhhHHHHHHHHHHhhcCceeccc
Confidence 4566777887653 34689999984 3 4445667788999999999996543
No 243
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=21.53 E-value=1.7e+02 Score=31.46 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=33.8
Q ss_pred CCeeEEEEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 005496 293 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (694)
Q Consensus 293 ~p~~a~v~~~~~L~~~~~~r~~~hi~~di~~-~~l~Y~~GD~l~V~p~N 340 (694)
..+.++|+..+.++. ++++++|+.++ ..+.|+||.++.|..++
T Consensus 101 ~~~~~~V~~~~~~~~-----d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 101 KKLPCRVASLERVAG-----DVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred eEEEEEEEEEEcCCC-----cEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 345688888887763 68899998864 36899999999998765
No 244
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=21.28 E-value=1.9e+02 Score=28.98 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=30.6
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 005496 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (694)
Q Consensus 296 ~a~v~~~~~L~~~~~~r~~~hi~~di~~~~l~Y~~GD~l~V~p~N 340 (694)
.++|++.+.++. +++.+.|..+ ..+.|+||+++.|..+.
T Consensus 2 ~~~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLTH-----DIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecCC-----CEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 477888888863 6888888765 36789999999998754
No 245
>PRK04148 hypothetical protein; Provisional
Probab=21.10 E-value=1.8e+02 Score=27.37 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEe
Q 005496 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (694)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (694)
.+.+||.+.-.. .+++++.++|+| +- ..+...|.++|.+.+
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~G-fG--------~~vA~~L~~~G~~Vi 43 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIG-FY--------FKVAKKLKESGFDVI 43 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEec-CC--------HHHHHHHHHCCCEEE
Confidence 456666653222 467899999998 22 345567778887654
No 246
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=20.90 E-value=70 Score=26.66 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=14.8
Q ss_pred ccCCCCeEEEeccCCH
Q 005496 327 TYETGDHVGVYVENCD 342 (694)
Q Consensus 327 ~Y~~GD~l~V~p~N~~ 342 (694)
.|++||.+.|+.+|+-
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 6999999999999985
No 247
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=20.85 E-value=5.1e+02 Score=27.15 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhcc-C--CeEEEEEecCCCCCCChhHHHHH---HHHhccC
Q 005496 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-E--TLAFFMVATYGDGEPTDNAARFY---KWFTEGN 169 (694)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~-~--~~vif~~sTyG~G~~p~na~~F~---~~L~~~~ 169 (694)
+-..+|+.|++.+.+. |+.+...+--..|-.--.-+.-+.. . .+|-+...++-.. ....++.+ +.|.+..
T Consensus 88 gd~~LA~~i~~~l~~~--g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p--~~~~~~~~~lG~al~~~i 163 (268)
T cd07367 88 GHREFARAFVRQAAED--GFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDP--APSPRRCWALGKVLAQYV 163 (268)
T ss_pred CCHHHHHHHHHHHHHc--CCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCC--CCCHHHHHHHHHHHHHHH
Confidence 3466999999999887 7765443211122111000111222 2 2333333333222 22334444 3454421
Q ss_pred CCCCCCCCceEEEEEecCcch
Q 005496 170 DRGPWLQQLKFGVFGLGNRQY 190 (694)
Q Consensus 170 ~~~~~l~~~~~avFGlGds~Y 190 (694)
.+ .+-.+++++|+|+|+-+.
T Consensus 164 ~~-~~~~d~rV~iiaSGgLSH 183 (268)
T cd07367 164 EK-RRPAGERVAVIAAGGLSH 183 (268)
T ss_pred Hh-cCCCCCcEEEEEcccccC
Confidence 10 001578999999999886
No 248
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.84 E-value=9.2e+02 Score=24.73 Aligned_cols=126 Identities=13% Similarity=0.021 Sum_probs=72.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCC---CcCc----hhHHhhhccCCeEEEEEecCCCCCCC
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY---AMDD----EQYEEKLKKETLAFFMVATYGDGEPT 155 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~---d~~~----~~~~~~l~~~~~vif~~sTyG~G~~p 155 (694)
++++.|+|.-++| +++.+-|. .+ ++...++.+.++ ..+. +.++..+++.+++| +.+ .-|
T Consensus 1 ~mki~vlt~g~yG--~R~~~nl~----~~--~f~~~~v~v~~~Pe~~~~fie~P~~~Lp~~~e~Di~v--a~~----lHP 66 (224)
T COG1810 1 MMKILVLTDGEYG--KRAVNNLA----CK--GFKNQFVAVKEYPEELPDFIEEPEDLLPKLPEADIVV--AYG----LHP 66 (224)
T ss_pred CcEEEEEeeccch--HHHHHhHh----hh--ccccceEEEEeccccccchhhCHHHhcCCCCCCCEEE--Eec----cCc
Confidence 5789999998887 34444444 22 222222222222 1111 22444444555444 332 345
Q ss_pred hhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHcCCeEeecceeecCCCCchHHHHHHHHHH
Q 005496 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (694)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~~~~W~~~l 235 (694)
|.--..-+... ..+.+.-|.+.++.. +.-++|.+...++|+....|.-.++-..+. ..|.+.+
T Consensus 67 Dl~~~L~e~~~--------~~~~~alIvp~~~~~-----g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~----~p~i~~F 129 (224)
T COG1810 67 DLLLALPEKAA--------EGGVKALIVPAEPPE-----GLRKQLKEFCEELGVEFEAPEPFCSLEPNE----NPHIDEF 129 (224)
T ss_pred cHHHHHHHHHH--------hCCccEEEEecCCCh-----hHHHHHHHHhhhcceeeecCCccccCCCCC----ChHHHHH
Confidence 65443444332 457788899965555 667999999999999998888777643322 5666555
Q ss_pred HHHH
Q 005496 236 WPEL 239 (694)
Q Consensus 236 ~~~L 239 (694)
.+..
T Consensus 130 ~e~F 133 (224)
T COG1810 130 AERF 133 (224)
T ss_pred HHHc
Confidence 4443
No 249
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=20.81 E-value=2.5e+02 Score=26.16 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=36.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEE--EcCCCCCcCc-hhHH-hhhccCCeEEEEEe
Q 005496 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV--VDLDDYAMDD-EQYE-EKLKKETLAFFMVA 147 (694)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v--~dl~~~d~~~-~~~~-~~l~~~~~vif~~s 147 (694)
.+|.|.|..-+-.=......|++.|++.+| +.|.+ .+..+....+ ...+ ..+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g-~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCG-IDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccC-CceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 379999999776667888999999986644 44321 1222211111 1122 33556666666666
No 250
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=20.75 E-value=1.9e+02 Score=32.99 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=57.8
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCch-hHHhhhccCCeEEEEEecCCCCCCChhHH
Q 005496 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-QYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (694)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~-~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (694)
++..-.+|.||++...+.+.|+.|++ . |+.++|+|+....+-|. .++..+.+.+.+|.+=--+-.|..-..
T Consensus 339 ~G~DvtIva~G~~v~~Al~Aa~~L~~----~--GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~-- 410 (464)
T PRK11892 339 EGKDVTIVSFSIGMTYALKAAEELAK----E--GIDAEVIDLRTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAE-- 410 (464)
T ss_pred cCCCEEEEEccHHHHHHHHHHHHHHh----c--CCCEEEEECCCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHH--
Confidence 34444566688888888888877754 5 78899999887765443 356667778877777555544443233
Q ss_pred HHHHHHhccCCCCCCCCCceEEEEEecC
Q 005496 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (694)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGd 187 (694)
....|.+...+ .+ ..++.-+|.-|
T Consensus 411 -va~~l~e~~f~--~l-~~pv~ri~~~d 434 (464)
T PRK11892 411 -IAARVMEQAFD--YL-DAPVLRVTGKD 434 (464)
T ss_pred -HHHHHHHhCcc--cc-CCCeEEeccCC
Confidence 44445443211 01 23566666544
No 251
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=20.72 E-value=3e+02 Score=32.46 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=35.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEE--EcCCCCC
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV--VDLDDYA 126 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v--~dl~~~d 126 (694)
++++|+++.||--||+--++..+.+.|+++ |+++++ .++.+.+
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~--GI~veV~~~~Vsev~ 549 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKR--GIPIIMDSCAVNDYK 549 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHc--CCCeEEEEechHhCc
Confidence 567899999999999999999999999988 776543 3555443
No 252
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=20.69 E-value=6e+02 Score=25.44 Aligned_cols=92 Identities=27% Similarity=0.273 Sum_probs=50.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEE-cCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~-dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (694)
.++|.|+|.... ..+..++.+.+.+++. |..+... ....-..+-...+..+...+.-++++.+.+ ..+..|
T Consensus 135 ~~~i~~v~~~~~-~~~~~~~~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~ 206 (298)
T cd06268 135 VKKVAIIYDDYA-YGRGLAAAFREALKKL--GGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYG-----GDAALF 206 (298)
T ss_pred CCEEEEEEcCCc-hhHHHHHHHHHHHHHc--CCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEcccc-----chHHHH
Confidence 578999987654 6677888888888766 5443221 221111111123444444332222223331 456778
Q ss_pred HHHHhccCCCCCCCCCceEEEEEecCcch
Q 005496 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY 190 (694)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~avFGlGds~Y 190 (694)
++.+.+. |....++|+.....
T Consensus 207 ~~~~~~~--------g~~~~~~~~~~~~~ 227 (298)
T cd06268 207 LKQAREA--------GLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHHc--------CCCCcEEecCccCC
Confidence 8888764 23677788655544
No 253
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=20.63 E-value=1e+02 Score=36.67 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe-eEEEcC
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA-VKVVDL 122 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~-~~v~dl 122 (694)
+.++|.|+++|-.|++.-++..|.+.+++. +.+ +++.+.
T Consensus 377 ~~kkilvVC~sG~GsS~m~~~~l~~~l~~~--~i~~i~i~~~ 416 (639)
T PRK15083 377 HVRKIIVACDAGMGSSAMGAGVLRKKVQDA--GLSQISVTNS 416 (639)
T ss_pred ccCEEEEECCCCccHHHHHHHHHHHHHHHc--CCCeeEEEEe
Confidence 356899999999999999999999999876 333 555443
No 254
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=20.62 E-value=2.3e+02 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=28.4
Q ss_pred EEEEEECCCchHHHHH--HHHHHHHHhhhCCCeeEEEcCCC
Q 005496 86 VTVFYGTQTGTAEGFA--KALAEEIKARYEKAAVKVVDLDD 124 (694)
Q Consensus 86 v~I~YgSqtGtte~~A--~~la~~l~~~~~g~~~~v~dl~~ 124 (694)
|.|+|.|++|+.+-.- +++..-|..+ ++..+-+|++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k--~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAK--KIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHC--CCceEEEecCC
Confidence 7899999999986554 4566667766 78888888874
No 255
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.62 E-value=1e+03 Score=25.27 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=81.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHh---hhccC---CeEEEEEecC-------
Q 005496 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEE---KLKKE---TLAFFMVATY------- 149 (694)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~---~l~~~---~~vif~~sTy------- 149 (694)
..++.|+....--.+..|++...+.+++- |+.++++.+.+...++ +++. ++.++ +.+++-.|=-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~~-el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~ 108 (284)
T PRK14190 32 VPGLAVILVGDDPASHSYVRGKKKAAEKV--GIYSELYEFPADITEE-ELLALIDRLNADPRINGILVQLPLPKHIDEKA 108 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHH-HHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence 45677887777778899999888888877 8999999887553222 2333 33333 3566666621
Q ss_pred ------------------------C-CCCCChhHHHHHHHHhccCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHH
Q 005496 150 ------------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (694)
Q Consensus 150 ------------------------G-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L 204 (694)
| .+-.|-++..-++.|+....+ ++|+++.|+|=+ +-.+|=+...|
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~i~---l~Gk~vvViGrS-------~iVG~Pla~lL 178 (284)
T PRK14190 109 VIERISPEKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYNID---ISGKHVVVVGRS-------NIVGKPVGQLL 178 (284)
T ss_pred HHhcCCccccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcCCC---CCCCEEEEECCC-------CccHHHHHHHH
Confidence 1 223577777788888775433 999999999832 23478899999
Q ss_pred HHcCCeEe
Q 005496 205 CKQGGARL 212 (694)
Q Consensus 205 ~~lGa~~i 212 (694)
...||+..
T Consensus 179 ~~~~atVt 186 (284)
T PRK14190 179 LNENATVT 186 (284)
T ss_pred HHCCCEEE
Confidence 99999865
No 256
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=1.8e+02 Score=29.33 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCCCEEEEEeecCCCcccccHHHHHhhHHcCCeeEEEEEEecCCCCcccccchhHHh-HHHHHhcccCCcEEEEeCCccc
Q 005496 574 QLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDK-AAQLWSLLSKEGYLYVCGDAKG 652 (694)
Q Consensus 574 ~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~-~~~l~~ll~~~~~iYvCG~a~~ 652 (694)
..|+.+|+-+||.....|++..-+..+.+.+.. .+++||||.-+. | +++.+. .-++.--=++|-.+|+=|=...
T Consensus 17 EqgkltLl~d~~eT~gsFl~H~~l~~~Lkan~~-~cFlaf~k~fsh--y--~i~~rKlG~~l~t~k~rgqlvF~dgl~~~ 91 (248)
T KOG4723|consen 17 EQGKLTLLLDTRETPGSFLFHYYLYHALKANES-TCFLAFSKTFSH--Y--AISMRKLGMDLKTKKNRGQLVFIDGLSML 91 (248)
T ss_pred CCccEEEEeecccCCceeeHHHHHHHHHhcCCc-EEEEEeecchhH--H--HHHHHHhCCceeecccCCcEEEEhhhhhh
Confidence 458999999999777799999999888887755 489999997432 1 111111 1011000113456777665211
Q ss_pred hHHHHHHHH------HHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005496 653 MARDVHRTL------HTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 653 M~~~V~~~L------~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 694 (694)
.+..+.+.- ...+....+-...-.++...+.++.=+..+|+|
T Consensus 92 ~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~ 139 (248)
T KOG4723|consen 92 FAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDID 139 (248)
T ss_pred hCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeee
Confidence 111111111 111112222233445788888888889999998
No 257
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=20.34 E-value=4.1e+02 Score=26.65 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=40.8
Q ss_pred CchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchhHHhhhccCCeEEEEEecCCCCCCChhHHHHH-HHHhccCCCC
Q 005496 94 TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY-KWFTEGNDRG 172 (694)
Q Consensus 94 tGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~-~~L~~~~~~~ 172 (694)
.||.-..|-.++..+.+. +...++.+. ...++.++|++. +|+|+|.+++=. .+....
T Consensus 77 GgT~lGaAl~~a~d~Ie~---------~~~~~~a~~------kgdyrP~vfLiT---DG~PtD~w~~~~~~~~~~~---- 134 (207)
T COG4245 77 GGTPLGAALTLALDMIEE---------RKRKYDANG------KGDYRPWVFLIT---DGEPTDDWQAGAALVFQGE---- 134 (207)
T ss_pred CCCchHHHHHHHHHHHHH---------HHhhcccCC------ccccceEEEEec---CCCcchHHHhHHHHhhhcc----
Confidence 566666665555444332 112344444 445777888764 999999866432 222222
Q ss_pred CCCCCceEEEEEecCc
Q 005496 173 PWLQQLKFGVFGLGNR 188 (694)
Q Consensus 173 ~~l~~~~~avFGlGds 188 (694)
-..++++.|++|-.
T Consensus 135 --~~~k~v~a~~~G~~ 148 (207)
T COG4245 135 --RRAKSVAAFSVGVQ 148 (207)
T ss_pred --cccceEEEEEeccc
Confidence 24577888888765
No 258
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=20.30 E-value=2.4e+02 Score=28.97 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=12.7
Q ss_pred ECCCchHHHHHHHHHH
Q 005496 91 GTQTGTAEGFAKALAE 106 (694)
Q Consensus 91 gSqtGtte~~A~~la~ 106 (694)
|-+.||++.+|+.|.+
T Consensus 111 Ge~~gNa~~LaD~Ive 126 (260)
T KOG4132|consen 111 GEDAGNAEILADLIVE 126 (260)
T ss_pred ccccccHHHHhHhhhh
Confidence 5677888888887776
No 259
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=20.28 E-value=2.3e+02 Score=30.65 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=58.3
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCchh-HHhhhccCCeEEEEEecCCCCCCChhHH
Q 005496 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAA 159 (694)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~~~-~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (694)
++..-.+|.||+++..+.+.|+.|++ + |++++|+|+-...+-|.+ +...+.+.+.++.+=--+-.|..-..
T Consensus 200 ~G~ditiia~G~~v~~al~Aa~~L~~----~--Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~-- 271 (327)
T CHL00144 200 PGNDITILTYSRMRHHVLQAVKVLVE----K--GYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAE-- 271 (327)
T ss_pred cCCCEEEEEccHHHHHHHHHHHHHHh----c--CCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHH--
Confidence 34444566788888888888877743 5 788999999888665533 44556677777777555544543333
Q ss_pred HHHHHHhccCCCCCCCCCceEEEEEecC
Q 005496 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (694)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~avFGlGd 187 (694)
..+++.+.... ....++.-+|.-|
T Consensus 272 -va~~l~e~~f~---~~~~pv~rl~~~d 295 (327)
T CHL00144 272 -LIAQINEHLFD---ELDAPIVRLSSQD 295 (327)
T ss_pred -HHHHHHHhchh---hcCCCeEEEccCC
Confidence 44555443100 0124666777645
No 260
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=20.09 E-value=1.5e+02 Score=32.12 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe
Q 005496 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (694)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~ 116 (694)
+.++|+|+++|..|--...|++|+++|.++ |..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~--g~~ 35 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQK--GIK 35 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhc--CCC
Confidence 456899999998768889999999999877 543
No 261
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=20.07 E-value=7.7e+02 Score=26.06 Aligned_cols=87 Identities=6% Similarity=0.030 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEEcCCCCCcCc--hhHHhhhcc-CC-eEEEEEecCCCCCCChhHHHHHHHHhccCCCC
Q 005496 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKK-ET-LAFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (694)
Q Consensus 97 te~~A~~la~~l~~~~~g~~~~v~dl~~~d~~~--~~~~~~l~~-~~-~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~ 172 (694)
...+|++|++.+.+. |+.+...+..+...|. ---+.-+.. .+ .+|-++... ....+...-+|=+.|.+...
T Consensus 95 d~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~-~~~~~~~~~~lG~al~~~i~-- 169 (282)
T TIGR02298 95 NPALGQLIADEAQEH--GVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWC-TVHDIEESRALGEAIRKAIE-- 169 (282)
T ss_pred CHHHHHHHHHHHHHC--CCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecC-CCCCHHHHHHHHHHHHHHHH--
Confidence 367999999999877 7765433323222221 001111222 22 244443322 12233444444455655311
Q ss_pred CCCCCceEEEEEecCcch
Q 005496 173 PWLQQLKFGVFGLGNRQY 190 (694)
Q Consensus 173 ~~l~~~~~avFGlGds~Y 190 (694)
-.+++++|+|+||-+.
T Consensus 170 --~~~~rV~iIaSG~lSH 185 (282)
T TIGR02298 170 --QSDGRVAVLASGSLSH 185 (282)
T ss_pred --hcCCCEEEEEecccce
Confidence 1468899999999885
Done!