Query 005496
Match_columns 694
No_of_seqs 364 out of 2950
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 18:09:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005496.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2004-2008//hhsearch_pdb/005496hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 1.0 1 1 974.0 66.0 602 71-694 6-617 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 1.0 1 1 948.6 62.0 596 70-694 36-682 (682)
3 1tll_A Nitric-oxide synthase, 1.0 1 1 891.7 60.2 589 78-694 6-654 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 1.0 1 1 712.0 48.3 430 258-694 21-457 (458)
5 2qtl_A MSR;, methionine syntha 1.0 1 1 686.3 46.6 403 284-694 104-538 (539)
6 4dql_A Bifunctional P-450/NADP 1.0 1 1 645.6 40.9 384 292-694 4-391 (393)
7 1f20_A Nitric-oxide synthase; 1.0 1 1 634.8 42.4 397 287-694 23-433 (435)
8 1ddg_A Sulfite reductase (NADP 1.0 1 1 606.3 40.2 370 286-694 3-374 (374)
9 3vo2_A Putative uncharacterize 1.0 1 1 306.2 27.3 274 287-694 26-310 (310)
10 1fnb_A Ferredoxin-NADP+ reduct 1.0 1 1 305.5 28.6 274 287-694 30-314 (314)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=1.00 E-value=1 Score=974.02 Aligned_cols=602 Identities=41% Similarity=0.754 Sum_probs=533.4
Q ss_pred CCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEEEC
Q ss_conf 8631699886199869999978985089999999999996508973699718998867446776211--57839999723
Q 005496 71 KDEDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVAT 148 (694)
Q Consensus 71 ~~~~~~~~~~~~~~~v~I~YgS~tGtte~~A~~la~~l~~~~~g~~~~v~~l~~~~~~~~~~~~~l~--~~~~vi~~~sT 148 (694)
..|+|++++.+.+++++|+|||||||||++|++|++++.+. |+.++++++++++.++ +..+. +++.+||++||
T Consensus 6 ~~~~~~~~~~~~~~~i~I~YgS~tGnte~~A~~la~~l~~~--g~~~~v~~~~~~~~~~---l~~~~~~~~~~vi~~~sT 80 (618)
T 3qe2_A 6 RESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRY--GMRGMSADPEEYDLAD---LSSLPEIDNALVVFCMAT 80 (618)
T ss_dssp -CCCHHHHHHHHTCSEEEEEECSSSHHHHHHHHHHHHGGGG--TCCEEEECGGGSCGGG---GGGGGGSTTCEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHC--CCCEEEECHHHCCHHH---HHHCCCCCCCEEEEECCC
T ss_conf 07899998872598299999977669999999999999868--9934994569868777---642013457579997071
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCHHHH
Q ss_conf 89999883499999999606999999899649999841946167989999999999986994852161404899956789
Q 005496 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDF 228 (694)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f 228 (694)
||+|++|+|+..|+++|.+...+ |++++||||||||++|+|||+++|.++++|+++||+++.++|+||++.+++++|
T Consensus 81 ~G~G~~pd~~~~F~~~L~~~~~~---l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~ 157 (618)
T 3qe2_A 81 YGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDF 157 (618)
T ss_dssp BGGGBCCGGGHHHHHHHHHCCCC---CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCC---CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
T ss_conf 37998877899999998622501---168879999678887076738999999999968998841540245678818889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC----CCCCCCCC-CCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 9999999999985517987878878897567784189981886----44457887-899999998777897237998867
Q 005496 229 TAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPT----VTSSVDNY-SNMPNGNASFDIHHPCRVNVAVRR 303 (694)
Q Consensus 229 ~~W~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~p~~a~v~~~~ 303 (694)
+.|.+.+|++|.+.+..+.... . ...+.+++...... ...+++.. ....+...+|+.++|+.++|+.|+
T Consensus 158 ~~W~~~l~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~ 231 (618)
T 3qe2_A 158 ITWREQFWLAVCEHFGVEATGE---E---SSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNR 231 (618)
T ss_dssp HHHHHHHHHHHHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCC---C---CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 9999999999998708876666---6---566522688425666432234542212211236787666785799998678
Q ss_pred EECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 72599999856999997348998458999589902699999999999919999528999507999998889888888876
Q 005496 304 ELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 383 (694)
Q Consensus 304 ~L~~~~~~r~~~hie~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~~~~~~~~~~~~~~~~~~p~p~p 383 (694)
+|+. +++|+|+||||++++++++|+|||||+|||.|+++.|++++++||+++|++|+++..++.. +.+.|||.|
T Consensus 232 ~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~-----~~~~~~p~~ 305 (618)
T 3qe2_A 232 KLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCP 305 (618)
T ss_dssp ECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTC-----SCCSSSSSS
T ss_pred ECCC-CCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC-----CCCCCCCCC
T ss_conf 8279-8888489999972798765556997899707999999999998595988659982588666-----677888884
Q ss_pred CCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCC--CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHH
Q ss_conf 638999975124689885999999998299998999998507--998554788998723999999987599999996879
Q 005496 384 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLS--SPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVF 461 (694)
Q Consensus 384 ~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~--s~~~~~~y~~~i~~~~~~l~dvl~~f~s~~~p~~~l 461 (694)
||++++|++|+||+++|+|+||+.||.||+|+.+|++|+.|+ +++|+++|.+|+.+++++++|||.+||++++|+++|
T Consensus 306 ~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l 385 (618)
T 3qe2_A 306 TSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHL 385 (618)
T ss_dssp EEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHH
T ss_pred EEHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHH
T ss_conf 48899653386167799699999999974998899999986236700089999998406998999998687567888999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHCCC-CCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 98845999871022378999999928999999970389998436932266641088-89999851899996089963689
Q 005496 462 FAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCSWAPIFIRPSNFKLPA 540 (694)
Q Consensus 462 i~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~g~~~~G~~S~~L~~l~~-g~~~~~~~~v~v~~~~g~F~lp~ 540 (694)
++++ |+++||+|||||+|..+++.++|+|+++.++++.++.+.|+||+||+++.+ |+ ......|++++|.|+|++|.
T Consensus 386 ~~~l-p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd-~~~~~~v~v~~p~g~F~lp~ 463 (618)
T 3qe2_A 386 CELL-PRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGE-NGGRALVPMFVRKSQFRLPF 463 (618)
T ss_dssp HHHS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCS
T ss_pred HHHC-CCCCCCEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCC-CCCCEEEEEEEECCCCCCCC
T ss_conf 9856-333452212026876799989999999997537898778751378874020578-77624999998568610787
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCC
Q ss_conf 99999699814864202599999999986439998987999920279862353999975087299209999971589874
Q 005496 541 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK 620 (694)
Q Consensus 541 ~~~~piImIa~GTGIAPfrs~lqer~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k 620 (694)
++.+|+||||+||||||||||+|+|.++..++...++++||||||+++.|++|++||++|.+.+.+++++++|||++..|
T Consensus 464 ~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k 543 (618)
T 3qe2_A 464 KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHK 543 (618)
T ss_dssp STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSC
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 77777589768852446999999999987538877988999961798513025999999996699747999984789987
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 43100268719999732259859999589600399999999999997059998899999999898898688209
Q 005496 621 EYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 621 ~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 694 (694)
+||||++.++.+.+++++.++++||||||+..|+++|+++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 544 ~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 544 VYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp CCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 76888999759999999868968999799367799999999999998089999999999999998698688504
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=1.00 E-value=1 Score=948.64 Aligned_cols=596 Identities=32% Similarity=0.584 Sum_probs=523.2
Q ss_pred CCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCCCCCHHHHHHHCCC-CEEEEEEE
Q ss_conf 8863169988619986999997898508999999999999-650897369971899886744677621157-83999972
Q 005496 70 AKDEDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIK-ARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVA 147 (694)
Q Consensus 70 ~~~~~~~~~~~~~~~~v~I~YgS~tGtte~~A~~la~~l~-~~~~g~~~~v~~l~~~~~~~~~~~~~l~~~-~~vi~~~s 147 (694)
+++++|++++.+.+++++|+|||||||||++|++|++++. +. |+.++++++++++.++ +.++ +.+||++|
T Consensus 36 ~~~~~~~~~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~--g~~v~v~~l~~~~~~~------l~~~~~~vi~~~s 107 (682)
T 2bpo_A 36 SGNRDIAQVVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKF--NLNVMCADVENYDFES------LNDVPVIVSIFIS 107 (682)
T ss_dssp --CCCHHHHHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHH--CCCEEEEETTSSCGGG------GGGCCSEEEEEEE
T ss_pred CCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEHHHCCHHH------HHHCCCEEEEEEC
T ss_conf 7621499998637981899999985079999999999867761--9944995158789888------8623773999947
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCC-CCHH
Q ss_conf 389999883499999999606999999899649999841946167989999999999986994852161404899-9567
Q 005496 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-CIED 226 (694)
Q Consensus 148 TyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~avFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~gD~~~-~~e~ 226 (694)
|||+|++|+|+..|+++|.... ...|++++|+|||+||++|+|||.++|.++++|+++||+++.+++++|++. +.++
T Consensus 108 T~G~G~~p~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~ 185 (682)
T 2bpo_A 108 TYGEGDFPDGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDE 185 (682)
T ss_dssp CBTTTBCCSSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--CHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCHH
T ss_conf 4079988989999999987456--21305988999925887843676999999999997799696875899248855399
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC---CCCCCCCCCCCCC----------CCCCCCCCCCC
Q ss_conf 8999999999999855179878788788975677841899818---8644457887899----------99999877789
Q 005496 227 DFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHG---PTVTSSVDNYSNM----------PNGNASFDIHH 293 (694)
Q Consensus 227 ~f~~W~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~~~ 293 (694)
+|+.|.+++|++|.+.+..+.... . ..+.+.++... +.+..++++..+. .+...+|+.++
T Consensus 186 ~~~~W~~~l~~~l~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (682)
T 2bpo_A 186 DYMAWKDSILEVLKDELHLDEQEA-K------FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQ 258 (682)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-C------CCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTB
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-C------CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999999986628865544-4------677513674256776422357530013332112222234567666789
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 72379988677259999985699999734899845899958990269999999999991999952899950799999888
Q 005496 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRG 373 (694)
Q Consensus 294 p~~a~v~~~~~L~~~~~~r~~~hie~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~~~~~~~~~~~~~ 373 (694)
||.++|+.|++|++ +++|+|+|||||+++++++|+|||||+|||.|+++.|++++++||+++|++|+++..++
T Consensus 259 p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~------ 331 (682)
T 2bpo_A 259 PYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP------ 331 (682)
T ss_dssp CCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST------
T ss_pred CEEEEEEEEEECCC-CCCCCEEEEEEECCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC------
T ss_conf 66889987787158-88877899999748997302579989997279999999999985125773799716776------
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCC-
Q ss_conf 9888888876638999975124689885999999998299998999998507998554788998723999999987599-
Q 005496 374 SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP- 452 (694)
Q Consensus 374 ~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~~l~dvl~~f~- 452 (694)
+.+.|||.|||++++|++|+||+++|+|+||+.||.||+|+.+|++|++|+ +|+++|.+|+.+++++++|+|.+||
T Consensus 332 -~~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~ 408 (682)
T 2bpo_A 332 -TVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSD 408 (682)
T ss_dssp -TCCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHT
T ss_pred -CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHC--CCHHHHHHHHHCCCCCHHHHHHHCCC
T ss_conf -667889987329999998614248998999999998788989999999861--38899999985279979999986557
Q ss_pred ---CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC---CCCCCCCCCHHHHHCCCC--------
Q ss_conf ---999996879988459998710223789999999289999999703899---984369322666410888--------
Q 005496 453 ---SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT---GRIHKGVCSTWMKNAIPL-------- 518 (694)
Q Consensus 453 ---s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~---g~~~~G~~S~~L~~l~~g-------- 518 (694)
++++|++++++.+ |+++||+|||||+|..+++.++|+|+++.++++. ++.+.|+||+||+++.+|
T Consensus 409 ~~~s~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~ 487 (682)
T 2bpo_A 409 GAKWDTVPMQFLVESV-PQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAE 487 (682)
T ss_dssp TCCCTTSCHHHHHHHS-CBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 5665678999999858-545565334467844589859999999997667666786658632488772152324665445
Q ss_pred ---CCCC---------CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH------CCCCCCCEEE
Q ss_conf ---9999---------851899996089963689999996998148642025999999999864------3999898799
Q 005496 519 ---EGNG---------DCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ------DGAQLGPALL 580 (694)
Q Consensus 519 ---~~~~---------~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~------~~~~~~~~~L 580 (694)
|+.. .+..|+++++.++|++|.++.+|+||||+||||||||||+|+|..... .+...++++|
T Consensus 488 ~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L 567 (682)
T 2bpo_A 488 TNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHIL 567 (682)
T ss_dssp SCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEE
T ss_pred CCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 55565122016767666756889986575568888889879995584758899999999973322333345677687799
Q ss_pred EEEECCCCCCCCCHHHHHHHH-HCCCEEEEEEEEEC-CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 992027986235399997508-72992099999715-8987443100268719999732259859999589600399999
Q 005496 581 FFGCRNRRMDFIYEDELNNFE-EEGVISELILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVH 658 (694)
Q Consensus 581 f~G~R~~~~D~ly~del~~~~-~~g~~~~l~~afSR-~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~ 658 (694)
|||||++. |++|++||++|. +.+.++++++|||| ++..|+||||+|.++.+.+++++.++++||||||+++|+++|+
T Consensus 568 ~fG~R~~~-D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~ 646 (682)
T 2bpo_A 568 FYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVS 646 (682)
T ss_dssp EEEESSSS-SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHH
T ss_pred EEECCCHH-HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 99569816-63049999999985598559999977898999764688998669999998708969999289467689999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999999997059998899999999898898688209
Q 005496 659 RTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 659 ~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 694 (694)
++|.+|+++++++++++|++++++|+++|||++|||
T Consensus 647 ~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 647 TALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999997089999999999999998798799739
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=1.00 E-value=1 Score=891.69 Aligned_cols=589 Identities=33% Similarity=0.596 Sum_probs=505.2
Q ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCHH
Q ss_conf 88619986999997898508999999999999650897369971899886744677621157839999723899998834
Q 005496 78 DIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDN 157 (694)
Q Consensus 78 ~~~~~~~~v~I~YgS~tGtte~~A~~la~~l~~~~~g~~~~v~~l~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p~n 157 (694)
+....+++++|+|||||||||++|++|++.+. . ++.+++++|++|+..+ +.+++++||++||||+|+||+|
T Consensus 6 ~~~~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~--~~~~~v~~m~~~d~~~------l~~~~~vl~vtsT~G~Gdpp~n 76 (688)
T 1tll_A 6 QAMAKRVKATILYATETGKSQAYAKTLCEIFK-H--AFDAKAMSMEEYDIVH------LEHEALVLVVTSTFGNGDPPEN 76 (688)
T ss_dssp ---CCSCEEEEEEECSSSHHHHHHHHHHHHHT-T--TSEEEEEETTTSCTTS------GGGCSEEEEEECCBTTTBCCGG
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHH-C--CCCCEEEECCCCCHHH------HCCCCEEEEEECCCCCCCCCHH
T ss_conf 67557983999998783579999999999985-6--8983896412179657------1547659999812489968777
Q ss_pred HHHHHHHHHCCCC---------------------------------------CCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 9999999960699---------------------------------------9999899649999841946167989999
Q 005496 158 AARFYKWFTEGND---------------------------------------RGPWLQQLKFGVFGLGNRQYEHFNKIGI 198 (694)
Q Consensus 158 a~~F~~~L~~~~~---------------------------------------~~~~l~~~~~avFGlGds~Y~~f~~~~k 198 (694)
+..|+++|.+... ....|++++||||||||++|+|||+++|
T Consensus 77 ~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k 156 (688)
T 1tll_A 77 GEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGH 156 (688)
T ss_dssp GHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 99999999742477655555433432213332234332233456555333344456789769999511576688889999
Q ss_pred HHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---CCC-CCCCCCEEEEECCCC
Q ss_conf 999999986994852161404899956789999999999998551798787887---8---897-567784189981886
Q 005496 199 VLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTV---S---TPY-TAAIPEYRVMIHGPT 271 (694)
Q Consensus 199 ~ld~~L~~lGa~~i~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~~---~---~p~-~~~~~~~~~~~~~~~ 271 (694)
.+|++|+++||+++.++++||+..+.+++|+.|.+.+|++|.+.+....+.... . .+. ....+.+++......
T Consensus 157 ~ld~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (688)
T 1tll_A 157 AVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEA 236 (688)
T ss_dssp HHHHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCC
T ss_pred HHHHHHHHCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 99999998699442553662167784999999999999999875288866554433332345643457761377325665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCC-CCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 44457887899999998777897237998867725999998569999973489-98458999589902699999999999
Q 005496 272 VTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGK 350 (694)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~ 350 (694)
... .....+++.++|+.++|+.|++|+.++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++++
T Consensus 237 ~~~--------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~ 308 (688)
T 1tll_A 237 PDL--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIE 308 (688)
T ss_dssp CCH--------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHT
T ss_pred CCC--------CCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 432--------223454456885698997556647888886089999956898988637889899963799999999999
Q ss_pred HHCC--CCCCEEEEEECCCCCCCCC----CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 9199--9952899950799999888----988888887663899997512468988599999999829999899999850
Q 005496 351 LLGQ--SLELLFSLHTDNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL 424 (694)
Q Consensus 351 ~l~l--~~d~~~~~~~~~~~~~~~~----~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l 424 (694)
+||+ ++|++|+++..++...+.+ ...+.+|| |||++++|++|+||+++|+|+||+.||.|++|+.+|++|++|
T Consensus 309 ~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l 387 (688)
T 1tll_A 309 RLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVL 387 (688)
T ss_dssp TCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHH
T ss_pred HHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8378788872899852566667776544445667889-865999998601077899799999999986999999999988
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC--C
Q ss_conf 79985547889987239999999875999999968799884599987102237899999992899999997038999--8
Q 005496 425 SSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--R 502 (694)
Q Consensus 425 ~s~~~~~~y~~~i~~~~~~l~dvl~~f~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~g--~ 502 (694)
++ +++.|.+|+..++++++|+|.+||++++|+++++..+ |+++||+|||||+|..+++.++|+|+++.++++.| +
T Consensus 388 ~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~ 464 (688)
T 1tll_A 388 SK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGP 464 (688)
T ss_dssp TT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSC
T ss_pred HC--CHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHC-CCCCEEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 66--9799999985138989999975887677999999768-66622688545786468985899999999745888877
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCEEEEEEECC-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCCEEE
Q ss_conf 43693226664108889999851899996089-963689999996998148642025999999999864-3999898799
Q 005496 503 IHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALL 580 (694)
Q Consensus 503 ~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~-~~~~~~~~~L 580 (694)
.+.|+||+||+++++| +.|.+++|++ .|.+|.++.+|+||||+||||||||+|+|++....+ .+...++++|
T Consensus 465 ~~~G~~S~~L~~l~~G------d~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L 538 (688)
T 1tll_A 465 VHHGVCSSWLNRIQAD------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVL 538 (688)
T ss_dssp EEECHHHHHHTTCCTT------SEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEE
T ss_pred CCCCCHHHHHHHCCCC------CEEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 6787464788718998------9899996028973568678987899974702187899999999753201578887899
Q ss_pred EEEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCC-CCCCCCHHHHH-HHHHHHCC-CCCCEEEEECCCCCHHHHH
Q ss_conf 992027986235399997508729920999997158987-44310026871-99997322-5985999958960039999
Q 005496 581 FFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL-SKEGYLYVCGDAKGMARDV 657 (694)
Q Consensus 581 f~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~-k~yVq~~l~~~-~~~i~~ll-~~~~~iYvCG~a~~M~~~V 657 (694)
|||||+++.|++|++||+++.+.+.+++++++|||++.. ++|||++|.++ ...+++.+ .++++|||||| .+|+++|
T Consensus 539 ~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V 617 (688)
T 1tll_A 539 VFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADV 617 (688)
T ss_dssp EEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHH
T ss_conf 997566200045899999999729962999998889888851321066776799999862259828999699-8999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9999999997059998899999999898898688209
Q 005496 658 HRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 658 ~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 694 (694)
.++|.+++++++++++++|++|+++|+.++||++|+|
T Consensus 618 ~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 618 LKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999997089999999999995232598899926
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=1.00 E-value=1 Score=711.96 Aligned_cols=430 Identities=41% Similarity=0.760 Sum_probs=390.6
Q ss_pred CCCCCEEEEECCCCC----CCCCCCCC-CCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 677841899818864----44578878-9999999877789723799886772599999856999997348998458999
Q 005496 258 AAIPEYRVMIHGPTV----TSSVDNYS-NMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGD 332 (694)
Q Consensus 258 ~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~~~~Y~~GD 332 (694)
....+|+++.+++.. +.|+++.. ...+++.+|+.++||.|+|++|++|+. .++|+|+|||||+++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred CCEECEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 3112108998047652000347711100013467987778978999987787479-889878999997079876527789
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 58990269999999999991999952899950799999888988888887663899997512468988599999999829
Q 005496 333 HVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHA 412 (694)
Q Consensus 333 ~l~V~p~N~~~~V~~~l~~l~l~~d~~~~~~~~~~~~~~~~~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~ 412 (694)
||+|||.|+++.|++++++||+++|++|+++..++.. +.+.|||.|+|++++|++|+||+++|+|+||+.||.||
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~-----~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a 174 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYA 174 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTC-----SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGB
T ss_pred EEEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCC-----CCCCCCCCCEEHHHHHHHCEECCCCCCHHHHHHHHHHC
T ss_conf 7999833999999999998686998469965787666-----66788888726999998607126899889999999976
Q ss_pred CCHHHHHHHHHCCC--CCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99989999985079--9855478899872399999998759999999687998845999871022378999999928999
Q 005496 413 TEPSEAERLKFLSS--PQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVT 490 (694)
Q Consensus 413 ~d~~~k~~L~~l~s--~~~~~~y~~~i~~~~~~l~dvl~~f~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~lt 490 (694)
+|+.+|++|++|++ ++|+++|.+|+.+++++++|||.+||++++|+++|++++ |+++||+|||||+|..+++.++|+
T Consensus 175 ~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~l-p~l~pR~YSIsSsp~~~~~~i~lt 253 (458)
T 3qfs_A 175 SEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELL-PRLQARYYSIASSSKVHPNSVHIC 253 (458)
T ss_dssp CSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHC-CCCCCEEEEECCCCCCCCCEEEEE
T ss_conf 9988999999874457224999999986349999999986875679989998647-777634676225855689879999
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99997038999843693226664108889999851899996089963689999996998148642025999999999864
Q 005496 491 CALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ 570 (694)
Q Consensus 491 v~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~v~~~~g~F~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~ 570 (694)
|++|.++++.|+.+.|+||+||+++.++++......|++++|.|.|.+|.++.+|+||||+||||||||||+|+|.++.+
T Consensus 254 V~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~ 333 (458)
T 3qfs_A 254 AVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQ 333 (458)
T ss_dssp EECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999327889878981558998426687667734999995478743687777865998388301438999999999985
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 39998987999920279862353999975087299209999971589874431002687199997322598599995896
Q 005496 571 DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDA 650 (694)
Q Consensus 571 ~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a 650 (694)
++...++++||||||+++.|++|++||++|.+.+.++++++||||++..|+||||+|.++.+.+|+++.++++||||||+
T Consensus 334 ~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~ 413 (458)
T 3qfs_A 334 QGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDA 413 (458)
T ss_dssp HTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 38878988999984891576437999999997299878999997899974567689997189999876189799997998
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 00399999999999997059998899999999898898688209
Q 005496 651 KGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 651 ~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 694 (694)
..|+++|+++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 414 ~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 414 RNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 89999999999999997089999999999999998798698704
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=1.00 E-value=1 Score=686.31 Aligned_cols=403 Identities=34% Similarity=0.611 Sum_probs=370.0
Q ss_pred CCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCC--CCEEE
Q ss_conf 9999877789723799886772599999856999997348998458999589902699999999999919999--52899
Q 005496 284 NGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSL--ELLFS 361 (694)
Q Consensus 284 ~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~--d~~~~ 361 (694)
+...+|+.++||.++|+.|++|+.++++|+|+||+||+++++++|+|||||+|||.|+++.|++++++||+++ +.+|.
T Consensus 104 ~~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~ 183 (539)
T 2qtl_A 104 SQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVL 183 (539)
T ss_dssp ---------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEE
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 36699888997787997568868999887679999966999867688998999807999999999998099866776999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 95079999988898888888766389999751246898859999999982999989999985079985547889987239
Q 005496 362 LHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQ 441 (694)
Q Consensus 362 ~~~~~~~~~~~~~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~ 441 (694)
++..++.... +.+.+++||.|||++++|++|+||+++|+|+||+.||.||+|+.+|++|++|++++|+++|.+|+.+++
T Consensus 184 ~~~~~~~~~~-~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~ 262 (539)
T 2qtl_A 184 LKIKADTKKK-GATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAC 262 (539)
T ss_dssp EEECTTCCCT-TCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTT
T ss_pred EECCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 8515666677-766788889864299999987051479999999999987699899999998747241899999986449
Q ss_pred CCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC--CCCCCCCCCHHHHHC----
Q ss_conf 99999987599999996879988459998710223789999999289999999703899--984369322666410----
Q 005496 442 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNA---- 515 (694)
Q Consensus 442 ~~l~dvl~~f~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~--g~~~~G~~S~~L~~l---- 515 (694)
++++|+|.+||++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.+..+. ++.+.|+||+||+++
T Consensus 263 ~~lldvL~~fps~~~p~~~ll~~l-p~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 263 ACLLDLLLAFPSCQPPLSLLLEHL-PKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp CCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTT
T ss_pred CCHHHHHHHCCCCCCCHHHHHHHC-CCCCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 989999986888678999999867-6876468864478657899899999999842677777688984556899766432
Q ss_pred -------CCCCCCCCCC-------EEEEEEECC-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC--CCCCCE
Q ss_conf -------8889999851-------899996089-96368999999699814864202599999999986439--998987
Q 005496 516 -------IPLEGNGDCS-------WAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG--AQLGPA 578 (694)
Q Consensus 516 -------~~g~~~~~~~-------~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~~~--~~~~~~ 578 (694)
.+| + .|++++|.| .|++|.++.+|+||||+||||||||||+|+|.++.+.+ ...+++
T Consensus 342 ~~~~~~~~~G------d~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v 415 (539)
T 2qtl_A 342 LQPNIHASHE------DSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAM 415 (539)
T ss_dssp C--------------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCE
T ss_pred CCCCCCCCCC------CCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 0244568998------7466676499999631887547866789779998673289999999999998752456888988
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCC------CCCCCCCHHHHHHHHHHHCC-CCCCEEEEECCCC
Q ss_conf 9999202798623539999750872992099999715898------74431002687199997322-5985999958960
Q 005496 579 LLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAK 651 (694)
Q Consensus 579 ~Lf~G~R~~~~D~ly~del~~~~~~g~~~~l~~afSR~~~------~k~yVq~~l~~~~~~i~~ll-~~~~~iYvCG~a~ 651 (694)
+||||||+++.|++|++||++|.+.+.++++++||||++. .++||||+|.++..++|+++ .++++||||||++
T Consensus 416 ~LffG~R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~ 495 (539)
T 2qtl_A 416 WLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAK 495 (539)
T ss_dssp EEEEEESCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf 99999888444167899999999719971899998068876665787012569999868999876245992899979879
Q ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 0399999999999997059998899999999898898688209
Q 005496 652 GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 652 ~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 694 (694)
+|+++|+++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 496 ~M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 496 NMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9999999999999997079999999999999997796799727
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=1.00 E-value=1 Score=645.56 Aligned_cols=384 Identities=35% Similarity=0.617 Sum_probs=351.4
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 89723799886772599999856999997348998458999589902699999999999919999528999507999998
Q 005496 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTP 371 (694)
Q Consensus 292 ~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~~~~~~~~~~~ 371 (694)
..++.|+|++|++|+.++++|+|+|||||+++ +++|+|||||+|||.|+++.|++++++||+++|+.|++......
T Consensus 4 ~~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~--- 79 (393)
T 4dql_A 4 HGAFSTNVVASKELQQPGSARSTRHLEIELPK-EASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEK--- 79 (393)
T ss_dssp -CCEEEEEEEEEECSCTTCSCCEEEEEEECCT-TCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC-------
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEEECCC-CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCC---
T ss_conf 78589999868881799988358999997799-98658898899970599999999999868497875997178876---
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 88988888887663899997512468988599999999829999899999850799855478899872399999998759
Q 005496 372 RGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEF 451 (694)
Q Consensus 372 ~~~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~~l~dvl~~f 451 (694)
....|+|.|+|++++|++ +||+++|+|++|+.||.||+|+.+|++|+.|++. +.|.+|+..++++++|+|.+|
T Consensus 80 ---~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 80 ---LAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred ---CCCCCCCCCEEHHHHHHH-CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCC---HHHHHHHHCCCCCHHHHHHHC
T ss_conf ---666888973889999975-4235898789999999867997799999987375---678999862699899999868
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCC-CCCCCCCHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 999999687998845999871022378999999928999999970389998-4369322666410888999985189999
Q 005496 452 PSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (694)
Q Consensus 452 ~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~g~-~~~G~~S~~L~~l~~g~~~~~~~~v~v~ 530 (694)
|++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.+++..|+ .+.|+||+||+++++| +.+.++
T Consensus 153 ps~~~p~~~~l~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~G------d~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIALL-PSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEG------DTITCF 225 (393)
T ss_dssp TTCCCCHHHHHHTS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTT------CEEEEE
T ss_pred CCCCCCHHHHHHHC-CCCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCC------CEEEEE
T ss_conf 87799999999868-78764300024564456745789999984356788844278453538758994------989999
Q ss_pred --EECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCEEE
Q ss_conf --608996368999999699814864202599999999986439998987999920279862353999975087299209
Q 005496 531 --IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 608 (694)
Q Consensus 531 --~~~g~F~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~g~~~~ 608 (694)
+|.|+|.+|.++.+|+||||+||||||||||+|+|.++.+.+...++++||||||++..|++|++||+++.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EECCCCCCCCCCCCCCCEEEECCCCEECHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCE-E
T ss_conf 975887841686688976998069240327999999999996399889899999889964406899999999847985-9
Q ss_pred EEEEEEC-CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999715-898744310026871999973225985999958960039999999999999705999889999999989889
Q 005496 609 LILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEG 687 (694)
Q Consensus 609 l~~afSR-~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 687 (694)
++++||| ++..|+||||++.++.+.+++++.++++||||||++.|+++|+++|.+|+++++++++++|++|+++|+++|
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 384 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKG 384 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCCCCHHHHHHHCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99998189999975612077769999999986896899979962547999999999999836999999999999999879
Q ss_pred CEEEEEC
Q ss_conf 8688209
Q 005496 688 RYLRDVW 694 (694)
Q Consensus 688 Ry~~Dvw 694 (694)
||++|||
T Consensus 385 Ry~~dv~ 391 (393)
T 4dql_A 385 RYAKDVW 391 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEEC
T ss_conf 8899841
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=1.00 E-value=1 Score=634.79 Aligned_cols=397 Identities=36% Similarity=0.654 Sum_probs=356.8
Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCC-CCCCCCCCEEEEECCCCHHHHHHHHHHHCC--CCCCEEEEE
Q ss_conf 98777897237998867725999998569999973489-984589995899026999999999999199--995289995
Q 005496 287 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLLGQ--SLELLFSLH 363 (694)
Q Consensus 287 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l--~~d~~~~~~ 363 (694)
..++.++||.++|+.|++|+.++++|+|+|||||++++ +++|+|||||+|||.|+++.|++++++||+ ++|++|+++
T Consensus 23 ~~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~ 102 (435)
T 1f20_A 23 SNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVE 102 (435)
T ss_dssp HHHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEE
T ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 55565884898998688878999884699999977899998688888899980699899999999848888898389984
Q ss_pred ECCCCCCCCCC----CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 07999998889----88888887663899997512468988599999999829999899999850799855478899872
Q 005496 364 TDNEDGTPRGS----SLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVA 439 (694)
Q Consensus 364 ~~~~~~~~~~~----~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~ 439 (694)
..++...+.+. ..+.+|| |||++++|++|+||+++|+|+||+.||.||+|+.+|++|++|++ +++.|.+|+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~ 179 (435)
T 1f20_A 103 MLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWG 179 (435)
T ss_dssp EEEEESSSTTCEEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC--CHHHHHHHHHC
T ss_conf 3555667777655555567889-86699999851116789989999999998799999999998626--99999998743
Q ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC--CCCCCCCCHHHHHCCC
Q ss_conf 39999999875999999968799884599987102237899999992899999997038999--8436932266641088
Q 005496 440 SQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIP 517 (694)
Q Consensus 440 ~~~~l~dvl~~f~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~g--~~~~G~~S~~L~~l~~ 517 (694)
.+++++|++.+||++++|+++++..+ |+++||+|||||+|..+++.++|+|+++.+.++.| +.+.|+||+||+++++
T Consensus 180 ~~~~i~~vl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~ 258 (435)
T 1f20_A 180 KNPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA 258 (435)
T ss_dssp HCCCHHHHHHHSTTBCBCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCT
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCC
T ss_conf 59989999986876788999999748-78777531324784348983899999999766888876458750156761799
Q ss_pred CCCCCCCCEEEEEEECC-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCCEEEEEEECCCCCCCCCHH
Q ss_conf 89999851899996089-963689999996998148642025999999999864-3999898799992027986235399
Q 005496 518 LEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYED 595 (694)
Q Consensus 518 g~~~~~~~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~d 595 (694)
| +.|.+++|++ .|.+|.++.+|+||||+||||||||||+|++....+ .+...++++||||||+++.|++|++
T Consensus 259 G------d~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~ 332 (435)
T 1f20_A 259 D------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYRE 332 (435)
T ss_dssp T------CEEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHH
T ss_pred C------CEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHH
T ss_conf 8------9899998318975689889998899977857278999999999864302687787899996416630055999
Q ss_pred HHHHHHHCCCEEEEEEEEECCCCC-CCCCCCHHHHH-HHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 997508729920999997158987-44310026871-99997322-5985999958960039999999999999705999
Q 005496 596 ELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVD 672 (694)
Q Consensus 596 el~~~~~~g~~~~l~~afSR~~~~-k~yVq~~l~~~-~~~i~~ll-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~ 672 (694)
||+++.+.+.+++++++|||++.. ++|||+++.++ .+.+++.+ +++++|||||| .+|+++|.++|.+++.++++++
T Consensus 333 El~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~ 411 (435)
T 1f20_A 333 ETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLS 411 (435)
T ss_dssp HHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999759962899998778888972563688763699999988509938999598-6699999999999999708999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 8899999999898898688209
Q 005496 673 SSKAESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 673 ~~~a~~~~~~l~~~~Ry~~Dvw 694 (694)
+++|++++++|+++|||++|||
T Consensus 412 ~~~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 412 EEDAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999998798899724
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=1.00 E-value=1 Score=606.32 Aligned_cols=370 Identities=30% Similarity=0.526 Sum_probs=342.4
Q ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 99877789723799886772599999856999997348998458999589902699999999999919999528999507
Q 005496 286 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 365 (694)
Q Consensus 286 ~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~~~~~ 365 (694)
.++|+.++||.++|+.|++|+.++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.|++.
T Consensus 3 ~~~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~-- 80 (374)
T 1ddg_A 3 TSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE-- 80 (374)
T ss_dssp CCCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET--
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEC--
T ss_conf 888888897799998779908999885189999975999865478998999807999999999998597978559977--
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 99999888988888887663899997512468988599999999829999899999850799855478899872399999
Q 005496 366 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 445 (694)
Q Consensus 366 ~~~~~~~~~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~~l~ 445 (694)
+.|+|++++|++|+||+ +|+|+||+.||.|++|++ |++|+ ++++.|.+|+. +++++
T Consensus 81 ---------------~~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~--~~~~~~~~~~~--~~~~~ 136 (374)
T 1ddg_A 81 ---------------GKTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLV--GDKAKLQHYAA--TTPIV 136 (374)
T ss_dssp ---------------TEEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGT--TCTHHHHHHHH--HSCHH
T ss_pred ---------------CCCCCHHHHHHHCCCCC-CCCHHHHHHHHHHCCCHH----HHHHH--CCHHHHHHHHC--CCCHH
T ss_conf ---------------98766999998545577-899999999998789989----99886--29699998871--89799
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHH-CCCCCCCCCC
Q ss_conf 998759999999687998845999871022378999999928999999970389998436932266641-0888999985
Q 005496 446 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDC 524 (694)
Q Consensus 446 dvl~~f~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~ 524 (694)
|+|.+||+ ++++|||+.+. +++++|+|||||+|..+++.++|+|+++.+.++ |+.+.|+||+||++ +++|
T Consensus 137 ~vl~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~G------ 207 (374)
T 1ddg_A 137 DMVRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE------ 207 (374)
T ss_dssp HHHHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSS------
T ss_pred HHHHHCCC-CCCHHHHHHHC-CCCCCCCCEECCCCCCCCCEEEEEEEEEEEECC-CCCCCCCCHHHHHHCCCCC------
T ss_conf 99987789-99989998322-478974424257977899989999999985068-9788987568897217898------
Q ss_pred CEEEEEEECC-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC
Q ss_conf 1899996089-963689999996998148642025999999999864399989879999202798623539999750872
Q 005496 525 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (694)
Q Consensus 525 ~~v~v~~~~g-~F~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~del~~~~~~ 603 (694)
+.|.+++|++ .|.+|.++.+|+||||+||||||||+|+|++... + ..++++||||||+++.|++|++||+++.+.
T Consensus 208 d~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~ 283 (374)
T 1ddg_A 208 GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---E-APGKNWLFFGNPHFTEDFLYQVEWQRYVKE 283 (374)
T ss_dssp CEEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCHHHHCTTHHHHHHHHHT
T ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---C-CCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 989999821897328988999889997781489999999999863---7-789789999827824533479999999983
Q ss_pred CCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99209999971589874431002687199997322598599995896003999999999999970599988999999998
Q 005496 604 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 683 (694)
Q Consensus 604 g~~~~l~~afSR~~~~k~yVq~~l~~~~~~i~~ll~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 683 (694)
+.+++++++|||++..++|||+++.++.+.+++++.+++++||||++++|+++|+++|.+++++++++++++|++++++|
T Consensus 284 ~~~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 363 (374)
T 1ddg_A 284 GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSEL 363 (374)
T ss_dssp TSCCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99839999982379987247779997299999987199489997987789999999999999984899999999999999
Q ss_pred HHCCCEEEEEC
Q ss_conf 98898688209
Q 005496 684 QMEGRYLRDVW 694 (694)
Q Consensus 684 ~~~~Ry~~Dvw 694 (694)
+++|||++|||
T Consensus 364 ~~~~Ry~~dv~ 374 (374)
T 1ddg_A 364 RVERRYQRDVY 374 (374)
T ss_dssp HHTTCEEEEEC
T ss_pred HHCCCEEEECC
T ss_conf 98798689619
No 9
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=1.00 E-value=1 Score=306.19 Aligned_cols=274 Identities=26% Similarity=0.458 Sum_probs=228.3
Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 98777897237998867725999998569999973489984589995899026999999999999199995289995079
Q 005496 287 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 366 (694)
Q Consensus 287 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~~~~~~ 366 (694)
..|+...|+.++|+.+++++..+....+++++|+.++ .+.|.||.|+.|.++...
T Consensus 26 ~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------ 80 (310)
T 3vo2_A 26 NKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG-EIPYREGQSIGIIADGED------------------------ 80 (310)
T ss_dssp CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC------------------------
T ss_pred EEECCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCC-CCCCCCCCEEEEECCCCC------------------------
T ss_conf 4316899889999978981588997628999995799-876668878999798758------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 99998889888888876638999975124689885999999998299998999998507998554788998723999999
Q 005496 367 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 446 (694)
Q Consensus 367 ~~~~~~~~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~~l~d 446 (694)
..|
T Consensus 81 ------------------------------------------------------------~~g----------------- 83 (310)
T 3vo2_A 81 ------------------------------------------------------------KNG----------------- 83 (310)
T ss_dssp ------------------------------------------------------------TTS-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
T ss_conf ------------------------------------------------------------899-----------------
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC---CCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 987599999996879988459998710223789999---99928999999970389998436932266641088899998
Q 005496 447 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGD 523 (694)
Q Consensus 447 vl~~f~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~ltv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~ 523 (694)
-++++|+|||+|+|.. .++.++|+|+++.+..+.|+.+.|.||+||+++++|
T Consensus 84 --------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G----- 138 (310)
T 3vo2_A 84 --------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG----- 138 (310)
T ss_dssp --------------------CBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTT-----
T ss_pred --------------------CCCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCC-----
T ss_conf --------------------7376431035878756478999899999998743688875785004578618997-----
Q ss_pred CCEEEEEEECCCC-CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 5189999608996-368999999699814864202599999999986439-99898799992027986235399997508
Q 005496 524 CSWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE 601 (694)
Q Consensus 524 ~~~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~del~~~~ 601 (694)
+.|.+.+|.|.| .+|.++..|+||||+|||||||++|++++....... ...++++||||||+.+ |++|++||+++.
T Consensus 139 -d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~ 216 (310)
T 3vo2_A 139 -ADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMK 216 (310)
T ss_dssp -CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHH
T ss_pred -CEEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHH-HCCCHHHHHHHH
T ss_conf -989999335874227878898789995894156899999999985255456778689999806746-451399999999
Q ss_pred HCCC-EEEEEEEEECCCC----CCCCCCCHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 7299-2099999715898----744310026871999973225-985999958960039999999999999705999889
Q 005496 602 EEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK 675 (694)
Q Consensus 602 ~~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~ 675 (694)
+.+. ++++++++||++. .++|||+++.+..+.+++.+. +++.+|+||| ++|+++|+++|.+++.+.+ + +
T Consensus 217 ~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~ 291 (310)
T 3vo2_A 217 EMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---D 291 (310)
T ss_dssp HHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---C
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEEECC-HHHHHHHHHHHHHHHHHCC-C---C
T ss_conf 849997899999887887778860344889999999999750469958999698-8999999999999998709-6---7
Q ss_pred HHHHHHHHHHCCCEEEEEC
Q ss_conf 9999999898898688209
Q 005496 676 AESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 676 a~~~~~~l~~~~Ry~~Dvw 694 (694)
+++++++|+++|||++|||
T Consensus 292 ~~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 292 WMQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHCCCEEEECC
T ss_conf 9999999987795699639
No 10
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=1.00 E-value=1 Score=305.48 Aligned_cols=274 Identities=27% Similarity=0.467 Sum_probs=225.8
Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 98777897237998867725999998569999973489984589995899026999999999999199995289995079
Q 005496 287 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 366 (694)
Q Consensus 287 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hie~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~~~~~~ 366 (694)
..++...++.++|+.+++++..++++++++++|+.++ .+.|+||+|+.|.+.|..
T Consensus 30 ~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------ 84 (314)
T 1fnb_A 30 NKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED------------------------ 84 (314)
T ss_dssp CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC------------------------
T ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCC-CCCCCCCCEEEEECCCCC------------------------
T ss_conf 4357789879999888993688878847999992699-777489998999657998------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 99998889888888876638999975124689885999999998299998999998507998554788998723999999
Q 005496 367 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 446 (694)
Q Consensus 367 ~~~~~~~~~~~~p~p~p~tl~~~l~~y~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~~l~d 446 (694)
..|
T Consensus 85 ------------------------------------------------------------~~g----------------- 87 (314)
T 1fnb_A 85 ------------------------------------------------------------KNG----------------- 87 (314)
T ss_dssp ------------------------------------------------------------TTS-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
T ss_conf ------------------------------------------------------------678-----------------
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC---CCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 987599999996879988459998710223789999---99928999999970389998436932266641088899998
Q 005496 447 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGD 523 (694)
Q Consensus 447 vl~~f~s~~~p~~~li~~~~p~l~pR~YSIsSsp~~---~~~~i~ltv~vv~~~~~~g~~~~G~~S~~L~~l~~g~~~~~ 523 (694)
.+.++|+|||+|+|.. .++.++|+|+.+.|.++.|+...|.||+||+++++|
T Consensus 88 --------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~G----- 142 (314)
T 1fnb_A 88 --------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPG----- 142 (314)
T ss_dssp --------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTT-----
T ss_pred --------------------CCCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCC-----
T ss_conf --------------------8178612743778756578898799999998852688875787066676439998-----
Q ss_pred CCEEEEEEECCCC-CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 5189999608996-368999999699814864202599999999986439-99898799992027986235399997508
Q 005496 524 CSWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE 601 (694)
Q Consensus 524 ~~~v~v~~~~g~F-~lp~~~~~piImIa~GTGIAPfrs~lqer~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~del~~~~ 601 (694)
+.+.+.+|.|+| .+|.+...|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|++||+++.
T Consensus 143 -d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~ 220 (314)
T 1fnb_A 143 -AEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMK 220 (314)
T ss_dssp -CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHH
T ss_pred -CEEEEEECCCCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHH-HHHHHHHHHHHH
T ss_conf -989999525873448888898889995783688899999999873243446778779999439779-842499999999
Q ss_pred HCCC-EEEEEEEEECCCC----CCCCCCCHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 7299-2099999715898----744310026871999973225-985999958960039999999999999705999889
Q 005496 602 EEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK 675 (694)
Q Consensus 602 ~~g~-~~~l~~afSR~~~----~k~yVq~~l~~~~~~i~~ll~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~ 675 (694)
+.+. ++++++++||+.. .++||++++.+....+++.+. +++.+|+||| ++|+++|.+.|.+++.+.+ . +
T Consensus 221 ~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~ 295 (314)
T 1fnb_A 221 EKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---D 295 (314)
T ss_dssp HHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---C
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHHHHHHC-C---H
T ss_conf 729985899999877876668985340689997099999987319809999898-8899999999999999818-2---2
Q ss_pred HHHHHHHHHHCCCEEEEEC
Q ss_conf 9999999898898688209
Q 005496 676 AESIVKKFQMEGRYLRDVW 694 (694)
Q Consensus 676 a~~~~~~l~~~~Ry~~Dvw 694 (694)
+++++++|+++|||++|||
T Consensus 296 ~~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 296 WIEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEECC
T ss_conf 9999999997796798629
Done!