BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005497
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 16/134 (11%)
Query: 514 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-- 571
V++V +F MDE +LDAICERL+ + S ++ G + +M+FI+RG++ES+ DG
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 572 ----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSL 627
L EGD CG+ELLTW L+ S + +P RTV+ LT VEAF+L
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGS------NLPSS----TRTVKALTEVEAFAL 117
Query: 628 RAADIEEVTSLFAR 641
A +++ V S F R
Sbjct: 118 IADELKFVASQFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 74/147 (50%)
Query: 442 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPED 501
Q + RR R +D++ ++R RLP+ L +++ E + W+ G++ L + P++
Sbjct: 5 QRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDE 64
Query: 502 LQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVR 561
L+ +I HL K + ++ +F L ++ ++ G ++ +G ++ + F+
Sbjct: 65 LRADIAMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCS 124
Query: 562 GKMESIGEDGIAVCLSEGDACGEELLT 588
G ME + ++ + L +GD G + LT
Sbjct: 125 GSMEVLKDNTVLAILGKGDLIGSDSLT 151
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP +R+++ + + + + +E+ + + L + L+ EI + K V
Sbjct: 19 KQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNFNCRKLV 77
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + A+ +LR + + G I+ G + +KM FI G I + +
Sbjct: 78 ATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEM 137
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
L++G GE LLT +SV D
Sbjct: 138 KLTDGSYFGEICLLTKGRRTASVRADT 164
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 444 LVKRRLDMSLRR-----RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNL 498
LV R D S R+ + VEQ+M +LP R+++ + + + + +ED + L
Sbjct: 1 LVPRGSDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGEL 59
Query: 499 PEDLQREIRR-HLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMV 557
L+ EI + K V + +FA D + A+ +L+ + + G I+ G + +KM
Sbjct: 60 NGPLREEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMY 119
Query: 558 FIVRGKMESIGEDGIAVCLSEGDACGE-ELLTWCLEHSSVNRDA 600
FI G + + + + LS+G GE LLT +SV D
Sbjct: 120 FIQHGVVSVLTKGNKEMKLSDGSYFGEISLLTRGRRTASVRADT 163
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 19 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 77
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 78 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 137
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
LS+G GE LLT +SV D
Sbjct: 138 KLSDGSYFGEICLLTRGRRTASVRADT 164
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 16 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 74
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 75 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 134
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 14 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 72
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 73 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 132
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
LS+G GE LLT +SV D
Sbjct: 133 KLSDGSYFGEICLLTRGRRTASVRADT 159
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 16 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 74
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 75 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 134
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FV 514
+ VE++M++R+LP LR ++ + Y + + +E +F + E +++++ + + V
Sbjct: 15 KQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLV 73
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IA 573
V F D + + L + + ++ G ++M FI +G ++ I DG IA
Sbjct: 74 ASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIA 133
Query: 574 VCLSEGDACGE 584
LS+G GE
Sbjct: 134 TSLSDGSYFGE 144
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +E+ + L E L+ EI + K V
Sbjct: 19 KQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNXRKLV 77
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + ++ +LR + + G I+ G + +KM FI G + + +
Sbjct: 78 ASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKET 137
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
L++G GE LLT +SV D
Sbjct: 138 KLADGSYFGEICLLTRGRRTASVRADT 164
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +E+ + L E L+ EI + K V
Sbjct: 13 KQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLV 71
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + ++ +LR + + G I+ G + +KM FI G + + +
Sbjct: 72 ASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKET 131
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
L++G GE LLT +SV D
Sbjct: 132 KLADGSYFGEICLLTRGRRTASVRADT 158
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +ED + L L+ +I + K V
Sbjct: 16 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLV 74
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 75 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 134
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+M +LP R+++ + + + + +E+ + L E L+ EI + K V
Sbjct: 13 KQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLV 71
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+ +FA D + ++ +LR + + G I+ G + +KM FI G + + +
Sbjct: 72 ASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKET 131
Query: 575 CLSEGDACGE 584
L++G GE
Sbjct: 132 KLADGSYFGE 141
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 456 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 514
+ VEQ+ +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 16 KQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPLREEIVNFNCRKLV 74
Query: 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 574
+FA D + A +L+ + + G I+ G + +K FI G + + +
Sbjct: 75 ASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKEX 134
Query: 575 CLSEGDACGEE-LLTWCLEHSSVNRDA 600
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 499 PEDLQREIRRHLF-KFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMV 557
P+D++ +I HL K K+ F L + L A+ + G I + G ++ +
Sbjct: 13 PKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLC 72
Query: 558 FIVRGKMESIGEDGIAVCLSEGDACGE 584
F+V G +E I +D + L +GD G+
Sbjct: 73 FVVSGSLEVIQDDEVVAILGKGDVFGD 99
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 437 MQNFLQALVKRRL--DMSLRRRDVEQWMRHRRLPEQLRR----QVREAERYNWAATRGVN 490
++N L AL R L D+S + + R EQ++R QV + ER WA N
Sbjct: 116 IENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVINN 175
Query: 491 EDMLFTNLPEDLQREIRRHLF 511
+ L NLP Q+ + H F
Sbjct: 176 DAELAQNLPHLQQKVLELHQF 196
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 528 LDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-----IAVCLSEGDAC 582
LD + ++ Y + S I+Y G E + FI++G + + ED I L+ GD
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 65
Query: 583 GE 584
GE
Sbjct: 66 GE 67
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 511 FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKM-----E 565
+F+K V F + E IL + + L + Y +G I+ +G + I +GK+ +
Sbjct: 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRED 215
Query: 566 SIGEDGIAV-CLSEGDACGEELL 587
S ED + + L +GD GE+ L
Sbjct: 216 SPNEDPVFLRTLGKGDWFGEKAL 238
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 510 LFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE 569
L K ++K +F+ +D+ I + + ++I+G ++ +G + I +G+M+
Sbjct: 33 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN 92
Query: 570 DGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPG------QRLLCNRTVRCLTNVE 623
+ A + EG + GE L + ++ + ++ G +R+L T+R E
Sbjct: 93 NEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYE 152
Query: 624 AFSLRAADIE 633
F + + +E
Sbjct: 153 EFLSKVSILE 162
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 510 LFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE 569
L K ++K +F+ +D+ I + + ++I+G ++ +G + I +G+M+
Sbjct: 35 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN 94
Query: 570 DGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPG------QRLLCNRTVRCLTNVE 623
+ A + EG + GE L + ++ + ++ G +R+L T+R E
Sbjct: 95 NEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYE 154
Query: 624 AFSLRAADIE 633
F + + +E
Sbjct: 155 EFLSKVSILE 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,828,812
Number of Sequences: 62578
Number of extensions: 813672
Number of successful extensions: 2183
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2156
Number of HSP's gapped (non-prelim): 28
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)