Query 005497
Match_columns 693
No_of_seqs 386 out of 2589
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 00:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.8E-83 3.9E-88 724.3 40.0 459 191-685 65-578 (727)
2 PLN03192 Voltage-dependent pot 100.0 4.9E-62 1.1E-66 581.4 45.0 393 192-642 50-489 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 2.9E-61 6.4E-66 509.3 24.1 437 167-642 182-661 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 2.4E-57 5.3E-62 476.9 33.1 385 211-642 4-426 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 8.7E-53 1.9E-57 447.0 23.3 410 193-653 217-649 (815)
6 KOG3713 Voltage-gated K+ chann 99.5 2.3E-14 5E-19 154.1 11.3 174 243-452 238-441 (477)
7 PRK09392 ftrB transcriptional 99.3 1.6E-11 3.4E-16 125.9 14.8 111 513-642 8-122 (236)
8 PRK11753 DNA-binding transcrip 99.3 7.7E-11 1.7E-15 118.4 16.1 105 521-643 6-115 (211)
9 cd00038 CAP_ED effector domain 99.3 4.7E-11 1E-15 106.1 12.8 103 519-640 1-108 (115)
10 PF00027 cNMP_binding: Cyclic 99.3 4E-11 8.6E-16 102.9 11.2 85 537-640 1-90 (91)
11 smart00100 cNMP Cyclic nucleot 99.2 2.3E-10 4.9E-15 102.2 13.1 107 519-642 1-112 (120)
12 PRK11161 fumarate/nitrate redu 99.1 7.9E-10 1.7E-14 113.2 14.1 110 514-643 15-130 (235)
13 KOG1113 cAMP-dependent protein 99.1 1.8E-10 3.8E-15 119.2 8.3 107 513-638 123-229 (368)
14 COG0664 Crp cAMP-binding prote 99.1 1.3E-09 2.9E-14 108.6 14.2 106 515-639 3-113 (214)
15 KOG1545 Voltage-gated shaker-l 99.1 1.5E-11 3.2E-16 126.3 -0.1 164 243-438 251-443 (507)
16 KOG0614 cGMP-dependent protein 99.1 1.1E-10 2.4E-15 125.4 6.1 114 507-639 148-262 (732)
17 PRK10402 DNA-binding transcrip 99.1 1E-09 2.2E-14 111.8 12.3 97 529-644 25-126 (226)
18 PF08412 Ion_trans_N: Ion tran 99.1 2.7E-10 5.9E-15 94.2 6.1 63 165-228 9-71 (77)
19 KOG0614 cGMP-dependent protein 99.1 4.1E-10 8.9E-15 121.2 8.8 108 513-639 273-387 (732)
20 COG2905 Predicted signal-trans 99.0 2E-09 4.2E-14 117.7 12.2 116 513-653 8-124 (610)
21 KOG1419 Voltage-gated K+ chann 99.0 3.4E-10 7.4E-15 122.4 5.0 91 383-480 264-354 (654)
22 PLN02868 acyl-CoA thioesterase 99.0 5.1E-09 1.1E-13 116.3 13.7 106 513-639 9-118 (413)
23 PF07885 Ion_trans_2: Ion chan 98.8 7.2E-09 1.6E-13 87.5 7.4 56 387-442 23-78 (79)
24 TIGR03697 NtcA_cyano global ni 98.8 2.3E-08 5E-13 98.8 11.8 84 543-643 1-89 (193)
25 PRK09391 fixK transcriptional 98.8 2.4E-08 5.3E-13 102.0 12.0 92 530-643 33-129 (230)
26 PRK13918 CRP/FNR family transc 98.8 4.4E-08 9.4E-13 97.7 12.3 79 534-632 5-90 (202)
27 KOG1113 cAMP-dependent protein 98.7 3E-08 6.5E-13 102.9 7.3 112 509-639 236-349 (368)
28 PF00520 Ion_trans: Ion transp 98.7 1E-08 2.2E-13 100.8 3.2 55 383-437 140-200 (200)
29 KOG1420 Ca2+-activated K+ chan 98.6 7.4E-09 1.6E-13 111.9 0.2 67 386-452 286-352 (1103)
30 KOG4390 Voltage-gated A-type K 98.4 6.5E-09 1.4E-13 107.9 -7.8 165 243-443 225-415 (632)
31 PRK10537 voltage-gated potassi 98.0 1.6E-05 3.4E-10 87.4 8.4 55 387-441 167-221 (393)
32 KOG3684 Ca2+-activated K+ chan 97.9 0.0004 8.6E-09 75.0 16.4 92 385-484 284-375 (489)
33 KOG2968 Predicted esterase of 97.5 6.9E-05 1.5E-09 86.0 4.3 96 526-640 499-599 (1158)
34 KOG1418 Tandem pore domain K+ 97.4 0.00024 5.1E-09 78.8 6.1 59 388-446 115-173 (433)
35 PRK11832 putative DNA-binding 97.1 0.009 2E-07 59.4 13.3 94 527-639 14-109 (207)
36 PF04831 Popeye: Popeye protei 96.9 0.017 3.7E-07 54.0 12.6 111 523-653 15-127 (153)
37 KOG3542 cAMP-regulated guanine 96.7 0.0052 1.1E-07 68.8 8.7 108 513-639 282-391 (1283)
38 KOG2968 Predicted esterase of 96.5 0.015 3.3E-07 67.5 11.0 100 530-642 110-215 (1158)
39 KOG4404 Tandem pore domain K+ 96.3 0.0044 9.5E-08 64.4 4.9 59 388-446 186-252 (350)
40 PF01007 IRK: Inward rectifier 95.8 0.014 3.1E-07 62.7 5.9 53 387-439 83-137 (336)
41 KOG4404 Tandem pore domain K+ 95.7 0.0044 9.6E-08 64.4 1.6 50 388-437 80-129 (350)
42 KOG3193 K+ channel subunit [In 94.6 0.037 8.1E-07 60.8 4.5 37 390-426 219-255 (1087)
43 KOG1418 Tandem pore domain K+ 93.5 0.024 5.1E-07 62.8 0.3 48 388-435 242-297 (433)
44 KOG3827 Inward rectifier K+ ch 92.6 0.23 5E-06 53.2 6.2 56 388-443 112-169 (400)
45 KOG2302 T-type voltage-gated C 90.9 3.6 7.9E-05 49.0 13.6 87 192-304 1103-1200(1956)
46 PLN03223 Polycystin cation cha 88.6 18 0.0004 45.2 17.4 24 43-67 999-1022(1634)
47 KOG3542 cAMP-regulated guanine 88.3 0.72 1.6E-05 52.4 5.4 89 513-628 38-126 (1283)
48 PF07883 Cupin_2: Cupin domain 80.3 3 6.4E-05 33.4 4.5 45 538-583 3-48 (71)
49 PF08006 DUF1700: Protein of u 77.0 8.1 0.00018 37.8 7.2 56 452-509 4-63 (181)
50 PF05899 Cupin_3: Protein of u 73.7 6.2 0.00013 32.6 4.6 30 554-583 26-55 (74)
51 PRK13290 ectC L-ectoine syntha 72.5 19 0.00041 33.1 7.9 49 536-584 38-87 (125)
52 COG4709 Predicted membrane pro 71.1 20 0.00044 35.0 7.9 56 453-510 5-64 (195)
53 PF00060 Lig_chan: Ligand-gate 62.8 13 0.00028 34.4 4.9 76 384-465 40-115 (148)
54 KOG3676 Ca2+-permeable cation 59.9 37 0.0008 40.3 8.7 83 393-476 591-682 (782)
55 KOG3614 Ca2+/Mg2+-permeable ca 54.3 4.2E+02 0.0091 33.8 16.5 55 417-471 1018-1074(1381)
56 COG1917 Uncharacterized conser 51.9 29 0.00063 31.7 5.3 51 535-586 45-96 (131)
57 PF14377 DUF4414: Domain of un 46.2 31 0.00067 30.8 4.3 44 466-509 52-105 (108)
58 PF13314 DUF4083: Domain of un 45.6 69 0.0015 25.1 5.3 49 415-463 5-56 (58)
59 PF10011 DUF2254: Predicted me 45.0 99 0.0021 34.0 8.9 67 384-452 96-164 (371)
60 COG0662 {ManC} Mannose-6-phosp 41.1 74 0.0016 29.1 6.1 49 534-583 37-86 (127)
61 KOG0501 K+-channel KCNQ [Inorg 39.4 2.6E+02 0.0057 32.3 10.8 48 495-542 499-552 (971)
62 PF15028 PTCRA: Pre-T-cell ant 37.0 14 0.00031 33.4 0.6 39 35-76 68-108 (154)
63 COG4325 Predicted membrane pro 34.1 2.6E+02 0.0057 30.7 9.4 63 383-447 127-194 (464)
64 PF10650 zf-C3H1: Putative zin 33.7 20 0.00042 22.8 0.7 10 137-146 10-19 (23)
65 KOG2301 Voltage-gated Ca2+ cha 32.6 92 0.002 40.6 6.8 47 243-309 870-917 (1592)
66 COG3450 Predicted enzyme of th 29.7 1.3E+02 0.0028 27.3 5.6 30 554-583 64-93 (116)
67 PF07697 7TMR-HDED: 7TM-HD ext 29.5 2E+02 0.0044 28.4 7.7 58 496-554 146-207 (222)
68 TIGR03037 anthran_nbaC 3-hydro 28.6 1.3E+02 0.0029 28.8 5.7 42 541-583 36-81 (159)
69 PRK11171 hypothetical protein; 28.5 1.3E+02 0.0029 31.3 6.4 49 534-583 185-234 (266)
70 PF06865 DUF1255: Protein of u 28.4 2.4E+02 0.0051 24.7 6.6 63 538-626 28-91 (94)
71 COG5374 Uncharacterized conser 27.5 6E+02 0.013 24.9 11.4 34 304-337 21-55 (192)
72 smart00835 Cupin_1 Cupin. This 27.4 1.2E+02 0.0026 28.3 5.2 50 535-584 32-87 (146)
73 PRK11677 hypothetical protein; 26.2 4.5E+02 0.0098 24.5 8.6 11 472-482 49-59 (134)
74 PF08566 Pam17: Mitochondrial 25.3 5.4E+02 0.012 25.1 9.1 62 408-469 68-132 (173)
75 KOG0498 K+-channel ERG and rel 25.0 6.1E+02 0.013 30.6 11.4 41 465-510 402-442 (727)
76 COG3837 Uncharacterized conser 24.5 1.6E+02 0.0035 28.1 5.3 49 537-586 46-96 (161)
77 PF14377 DUF4414: Domain of un 24.1 1.4E+02 0.003 26.6 4.7 47 466-512 8-67 (108)
78 KOG2302 T-type voltage-gated C 23.7 1.1E+03 0.023 29.6 12.7 75 206-307 81-159 (1956)
79 PRK10579 hypothetical protein; 22.7 4.4E+02 0.0096 23.0 7.2 46 537-584 27-73 (94)
80 PF00612 IQ: IQ calmodulin-bin 22.6 1.1E+02 0.0024 18.4 2.7 17 663-679 3-19 (21)
81 COG5559 Uncharacterized conser 22.0 1.4E+02 0.0029 23.6 3.5 22 463-484 7-28 (65)
82 TIGR03214 ura-cupin putative a 21.5 1.7E+02 0.0036 30.5 5.4 50 533-583 179-229 (260)
83 PF02037 SAP: SAP domain; Int 21.5 1.6E+02 0.0034 20.5 3.6 26 454-479 5-35 (35)
84 PRK04190 glucose-6-phosphate i 21.5 2.8E+02 0.0061 27.5 6.7 49 536-584 71-132 (191)
85 COG1422 Predicted membrane pro 21.4 3.7E+02 0.0081 26.8 7.3 39 426-464 49-90 (201)
86 PF06249 EutQ: Ethanolamine ut 20.8 1.4E+02 0.0031 28.4 4.3 29 554-583 96-124 (152)
87 PF11151 DUF2929: Protein of u 20.4 53 0.0012 25.8 1.1 18 388-405 2-19 (57)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-83 Score=724.25 Aligned_cols=459 Identities=41% Similarity=0.722 Sum_probs=407.0
Q ss_pred cCCeeEcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecCCcchhHHHHHHHHHHHHHHHHHhhcceeE
Q 005497 191 YVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAY 270 (693)
Q Consensus 191 ~~~~ii~P~S~f~~~Wd~i~~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDIll~F~t~y 270 (693)
...+||+|+|+++..||.+++++++|+++++|++++|+...++..| +|......+.+++.++|++|++||+++|+|||
T Consensus 65 ~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay 142 (727)
T KOG0498|consen 65 SRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY 142 (727)
T ss_pred ccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence 3456999999999999999999999999999999999998888888 88888999999999999999999999999999
Q ss_pred EcCCccccCCCeEEecHHHHHHHHHhhhHHHHHHHhcChhh--------------------------hhHHHHHHHhhhh
Q 005497 271 VAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ--------------------------RVNQCLRDACHNS 324 (693)
Q Consensus 271 ~~~~s~~~~~g~~V~d~k~Ia~~Ylk~~FiiDlls~iPl~~--------------------------Rl~rllr~~~~~~ 324 (693)
++++| -++|.||++||+||+++||++|++|++|+++ ||.|+.|.+.+..
T Consensus 143 v~~~s-----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~ 217 (727)
T KOG0498|consen 143 VDPSS-----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFA 217 (727)
T ss_pred ECCCC-----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99954 3899999999999999999999999999987 4555555444332
Q ss_pred ch------h----------------hhhHHhhhccccccchhhhccccc-ccccccc-cccccccCcccccchhhhcccc
Q 005497 325 SI------Q----------------DCKKFLDCGHGNGGAEYSQDQTWK-SWSGNQQ-ASDCFEKDKFSYGIYEQAVKLT 380 (693)
Q Consensus 325 ~i------~----------------~~~h~l~c~~~~i~~~~~~~~~~~-~wl~~~~-~~~C~~~~~~~~~~~~~~~~l~ 380 (693)
.+ . ++.||++|+||+++..+....... .|+.... ...|- ...+.+|.
T Consensus 218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~-~~~~~fg~-------- 288 (727)
T KOG0498|consen 218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCY-NLSFTFGI-------- 288 (727)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccC-cccccccc--------
Confidence 11 0 233999999999987665433333 6764321 11221 11233443
Q ss_pred CCcchHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 381 TENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQ 460 (693)
Q Consensus 381 ~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ 460 (693)
.+++.+|++|+||+++||||+|||+++|+|..|++|+|++|++|.++||++||||+++++.+..+..+|+.+++++++
T Consensus 289 --~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~ 366 (727)
T KOG0498|consen 289 --YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQ 366 (727)
T ss_pred --hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHH
Confidence 566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhCCCChHHHHhcCChhHHHHHHHHHHH-HhhhhhhcccCCHHHHHHHHHHcceee
Q 005497 461 WMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKT 539 (693)
Q Consensus 461 ym~~~~Lp~~Lq~rV~~y~~y~~~~~~~~~e~~iL~~Lp~~Lr~~I~~~~~~-~l~~i~~F~~ls~~~l~~L~~~l~~~~ 539 (693)
||++++||++||+||++|++|+|..++|+||+++|++||++||++|.+|+|. +++++|+|+.+|++++++|+.+++...
T Consensus 367 ~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~ 446 (727)
T KOG0498|consen 367 WMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEY 446 (727)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eCCCCEEEccCCccCeEEEEEeeEEEEEecCC----eEEEcCCCCeEehhhhhhhccccccccccccccCCCCcccceeE
Q 005497 540 YISGSKILYRGGLIEKMVFIVRGKMESIGEDG----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRT 615 (693)
Q Consensus 540 y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g----~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~~~~t 615 (693)
|.|||+|++|||++++||||.+|.+++...+| +...|++||+|||+.+.++++ . |+++|
T Consensus 447 f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~------------~-----p~t~T 509 (727)
T KOG0498|consen 447 FTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLD------------L-----PQTRT 509 (727)
T ss_pred cCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhc------------C-----CCCce
Confidence 99999999999999999999999999998664 899999999999777776531 2 46899
Q ss_pred EEEcceEEEEEeeHHHHHHHHHHhHhhccChhhhhhhhhcCchhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 005497 616 VRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSH 685 (693)
Q Consensus 616 v~Alt~~~l~~L~~~df~~ll~~~p~~l~~p~~~~~~r~~s~~~~~~a~~~~q~~~~~~~~r~~~~~~~~ 685 (693)
|+|+|.|+++.|+++||.+++++|| .+++..+++.+++++.+||.++++.+|++|+++.+|+...+.+.
T Consensus 510 Vralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~ 578 (727)
T KOG0498|consen 510 VRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELAL 578 (727)
T ss_pred eehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhh
Confidence 9999999999999999999999997 77788899999999999999999999999999999986665544
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=4.9e-62 Score=581.40 Aligned_cols=393 Identities=21% Similarity=0.344 Sum_probs=337.9
Q ss_pred CCeeEcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecCCcchhHHHHHHHHHHHHHHHHHhhcceeEE
Q 005497 192 VPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYV 271 (693)
Q Consensus 192 ~~~ii~P~S~f~~~Wd~i~~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDIll~F~t~y~ 271 (693)
.+|||+|+++++.+||++++++++|+++++|+.++|.... ....+.++++++|++|++||+++|+|||+
T Consensus 50 ~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~-----------~~~~~~~~d~i~~~~F~iDi~l~f~~ay~ 118 (823)
T PLN03192 50 DGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNAS-----------PKRGLEIADNVVDLFFAVDIVLTFFVAYI 118 (823)
T ss_pred CCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCC-----------CCCCeeeHHHHHHHHHHHHHHhheeEEEE
Confidence 4679999999999999999999999999999999995311 12356789999999999999999999999
Q ss_pred cCCccccCCCeEEecHHHHHHHHHhhhHHHHHHHhcChhh------------------hhHHHHHHHhhhhch-------
Q 005497 272 APESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ------------------RVNQCLRDACHNSSI------- 326 (693)
Q Consensus 272 ~~~s~~~~~g~~V~d~k~Ia~~Ylk~~FiiDlls~iPl~~------------------Rl~rllr~~~~~~~i------- 326 (693)
++ .+|.+|.||++|++||+++||++|+++++|++. |++|++|+.+....+
T Consensus 119 d~-----~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~ 193 (823)
T PLN03192 119 DP-----RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDI 193 (823)
T ss_pred eC-----CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 678999999999999999999999999999864 333333332221000
Q ss_pred ----------------hhhhHHhhhccccccchhhhcccccccccccccccccccCcccccchhhh-ccccCCcchHHHH
Q 005497 327 ----------------QDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQA-VKLTTENSIITRY 389 (693)
Q Consensus 327 ----------------~~~~h~l~c~~~~i~~~~~~~~~~~~wl~~~~~~~C~~~~~~~~~~~~~~-~~l~~~~~~~~~Y 389 (693)
..+.|+++|+|++++.... ....+|+ .. .+...+.+++.+|
T Consensus 194 ~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~--~~~~~Wi--------------------~~~~~~~~~~s~~~~Y 251 (823)
T PLN03192 194 RFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYP--HQGKTWI--------------------GAVIPNFRETSLWIRY 251 (823)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCchH--------------------HHhhhccccCcHHHHH
Confidence 0233777777766532111 1112343 22 1112247899999
Q ss_pred HHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 005497 390 VYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 469 (693)
Q Consensus 390 l~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~Lp~ 469 (693)
++|+|||++|||||||||++|.|..|+++++++|++|+++|||++|++++++.+.+.+..+|+++++.+++||++++||+
T Consensus 252 i~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~ 331 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPP 331 (823)
T ss_pred HHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHhcCChhHHHHHHHHHHH-HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEc
Q 005497 470 QLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILY 548 (693)
Q Consensus 470 ~Lq~rV~~y~~y~~~~~~~~~e~~iL~~Lp~~Lr~~I~~~~~~-~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~ 548 (693)
.||+||++|++|.|+ .+..+++++++.||++||.+|..+++. .++++++|++++++++.+|+..++.+.|.|||.|+.
T Consensus 332 ~lq~ri~~y~~~~~~-~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~ 410 (823)
T PLN03192 332 RLKDQILAYMCLRFK-AESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIM 410 (823)
T ss_pred HHHHHHHHHHHHHHh-hccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEE
Confidence 999999999999995 456889999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCccCeEEEEEeeEEEEEecC-C---eEEEcCCCCeEehhhhhhhccccccccccccccCCCCcccceeEEEEcceEEE
Q 005497 549 RGGLIEKMVFIVRGKMESIGED-G---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEA 624 (693)
Q Consensus 549 ~G~~~~~~yfI~~G~v~v~~~~-g---~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l 624 (693)
+||.++++|||++|+|+++..+ | .+..+.+|++|||.+++.+. +++++++|.+.|++
T Consensus 411 qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~-------------------p~~~t~ra~~~s~l 471 (823)
T PLN03192 411 QNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCR-------------------PQSFTFRTKTLSQL 471 (823)
T ss_pred CCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcCC-------------------CCCCeEEEcccEEE
Confidence 9999999999999999998633 2 68899999999999998531 57899999999999
Q ss_pred EEeeHHHHHHHHHHhHhh
Q 005497 625 FSLRAADIEEVTSLFARF 642 (693)
Q Consensus 625 ~~L~~~df~~ll~~~p~~ 642 (693)
+.|++++|.++++.+|+.
T Consensus 472 l~l~~~~f~~ll~~~p~d 489 (823)
T PLN03192 472 LRLKTSTLIEAMQTRQED 489 (823)
T ss_pred EEEEHHHHHHHHHHhhHH
Confidence 999999999999999554
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-61 Score=509.30 Aligned_cols=437 Identities=21% Similarity=0.372 Sum_probs=365.0
Q ss_pred hhhhhhccCChhhHHHHHHHhhhccCCeeEcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecCCcchh
Q 005497 167 PKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKA 246 (693)
Q Consensus 167 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~ii~P~S~f~~~Wd~i~~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~~~~~~ 246 (693)
+.+...+.-..+.+.+..++.. +-+|.||..++.|+-+||.+++++.+|+.+++||-++|-..+.+ ...
T Consensus 182 S~la~vm~Lg~DilPQYrQEaP-KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~----------~vs 250 (971)
T KOG0501|consen 182 SNLAEVMQLGSDILPQYRQEAP-KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRN----------NVS 250 (971)
T ss_pred hhHHHHHHhccccchhhhhcCC-CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccC----------cee
Confidence 4444444444455555555555 45788999999999999999999999999999999988754322 345
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeEEcCCccccCCCeEEecHHHHHHHHHhhhHHHHHHHhcChhh---------------
Q 005497 247 IVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ--------------- 311 (693)
Q Consensus 247 ~~~i~~i~diiF~lDIll~F~t~y~~~~s~~~~~g~~V~d~k~Ia~~Ylk~~FiiDlls~iPl~~--------------- 311 (693)
|.+++.++|+||++||+|||+|.|+.| .|++|.|||.|+.+|+|+||++|++|++|+++
T Consensus 251 ~lvvDSiVDVIF~vDIvLNFHTTFVGP------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLF 324 (971)
T KOG0501|consen 251 WLVVDSIVDVIFFVDIVLNFHTTFVGP------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLF 324 (971)
T ss_pred EEEecchhhhhhhhhhhhhcceeeecC------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHH
Confidence 778899999999999999999999998 89999999999999999999999999999998
Q ss_pred ------hhHHH---HHHHhhhhchh------------hhhHHhhhccccccchhhh----ccc-cccccccccccccccc
Q 005497 312 ------RVNQC---LRDACHNSSIQ------------DCKKFLDCGHGNGGAEYSQ----DQT-WKSWSGNQQASDCFEK 365 (693)
Q Consensus 312 ------Rl~rl---lr~~~~~~~i~------------~~~h~l~c~~~~i~~~~~~----~~~-~~~wl~~~~~~~C~~~ 365 (693)
|++|+ .|.+..+.++. +..||++|+|+.+|..... +.. ..+|+......
T Consensus 325 SaLKVVRLLRLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~----- 399 (971)
T KOG0501|consen 325 SALKVVRLLRLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLAND----- 399 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhh-----
Confidence 33333 33333333221 2239999999999864322 222 22565322111
Q ss_pred Ccccccch-hhhccccCCcchHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 366 DKFSYGIY-EQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQAL 444 (693)
Q Consensus 366 ~~~~~~~~-~~~~~l~~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 444 (693)
.+.+|..- ..+-.+.+..+--..|+.|+||.++.|||||+|.|.|.+..|++|++++|++|.++||-++|+++.|++++
T Consensus 400 ~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 400 IGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred cCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 01222211 11111222344556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhCCCChHHHHhcCChhHHHHHHHHHHH-HhhhhhhcccC
Q 005497 445 VKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALM 523 (693)
Q Consensus 445 ~~~~~~~~~~~~~v~~ym~~~~Lp~~Lq~rV~~y~~y~~~~~~~~~e~~iL~~Lp~~Lr~~I~~~~~~-~l~~i~~F~~l 523 (693)
.+....|++.++.|.+||+-..+|+.|..||.+|.--.|...+|+|.+++|+..|+++|.+|..|+.+ .++..|.|+..
T Consensus 480 ~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLA 559 (971)
T KOG0501|consen 480 TSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLA 559 (971)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEehhhhhhhccccccccccccc
Q 005497 524 DEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRY 603 (693)
Q Consensus 524 s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~ 603 (693)
++..+++|+..++.....|||.|++.||..+.++||++|.++++.+|.++++|++||+||++.+-..
T Consensus 560 SDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~~------------- 626 (971)
T KOG0501|consen 560 SDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKEN------------- 626 (971)
T ss_pred cchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcEEEEeecCccchhHHhhhh-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999877431
Q ss_pred cCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 005497 604 RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 642 (693)
Q Consensus 604 ~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~ 642 (693)
.+ + .+.++|+|+|.|.+..|.++.+.+++.-|..|
T Consensus 627 t~-~---qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAF 661 (971)
T KOG0501|consen 627 TL-G---QSAANVRALTYCDLHMIKRDKLLKVLDFYTAF 661 (971)
T ss_pred hh-h---hhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHH
Confidence 11 3 46799999999999999999999999988555
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-57 Score=476.92 Aligned_cols=385 Identities=23% Similarity=0.374 Sum_probs=327.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCceeeecCCcchhHHHHHHHHHHHHHHHHHhhcceeEEcCCccccCCCeEEecHHHH
Q 005497 211 VITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKI 290 (693)
Q Consensus 211 ~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDIll~F~t~y~~~~s~~~~~g~~V~d~k~I 290 (693)
.+.++|++++++...+|...+ ..+...|..+|+++|++|++||+++.||||+ ++|.+|.|-++.
T Consensus 4 s~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyl-------eqGllV~~~~Kl 67 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYL-------EQGLLVKDTSKL 67 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------hcCeeehhhHHH
Confidence 456899999999999997544 3456789999999999999999999999998 789999999999
Q ss_pred HHHHHhh-hHHHHHHHhcChhh-----------hhHHHHHHHhhhhch----------------------hhhhHHhhhc
Q 005497 291 ALNYLRG-YFFIDFFVALPLPQ-----------RVNQCLRDACHNSSI----------------------QDCKKFLDCG 336 (693)
Q Consensus 291 a~~Ylk~-~FiiDlls~iPl~~-----------Rl~rllr~~~~~~~i----------------------~~~~h~l~c~ 336 (693)
++||+.+ .|.+|++|++|+++ |++|++|.+++..-+ -.+.||-+|.
T Consensus 68 ~~hY~~s~~f~lD~l~liP~D~l~~~~~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaCl 147 (536)
T KOG0500|consen 68 RKHYVHSTQFKLDVLSLIPLDLLLFKDGSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACL 147 (536)
T ss_pred HHHHHHhhhhhhhhhhhcchhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHH
Confidence 9999998 79999999999998 777877776653110 0223677776
Q ss_pred cccccchhhhcccccccccccccccccccCcccccchhh-hccccCCcchHHHHHHHHHHHhhhccccccCCCCCCchhh
Q 005497 337 HGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQ-AVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGE 415 (693)
Q Consensus 337 ~~~i~~~~~~~~~~~~wl~~~~~~~C~~~~~~~~~~~~~-~~~l~~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E 415 (693)
++++.... ......|. |+-..+ ........++..+|++|+||+..||||+|--..| .+..|
T Consensus 148 Yf~iS~~~--g~~~d~wv---------------Y~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P-~t~~e 209 (536)
T KOG0500|consen 148 YFLISKAI--GFTTDDWV---------------YPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQPPP-VTSSE 209 (536)
T ss_pred HHhhhHhc--Cccccccc---------------cCCccCccccccchhHHHHHHHHHHHHHhhhhhhccCCCCC-CcCch
Confidence 65542210 00111132 211011 0011112458899999999999999999866554 56799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhCCCChHHHH
Q 005497 416 VLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLF 495 (693)
Q Consensus 416 ~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~Lp~~Lq~rV~~y~~y~~~~~~~~~e~~iL 495 (693)
.+|.|+-.++|+++||.++|++++++.++++.+.+|+.+|+.+++||+.|++|..||.||.+||+|.|.+++..+|++++
T Consensus 210 y~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl 289 (536)
T KOG0500|consen 210 YAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVL 289 (536)
T ss_pred hhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHH-HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCC--e
Q 005497 496 TNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG--I 572 (693)
Q Consensus 496 ~~Lp~~Lr~~I~~~~~~-~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g--~ 572 (693)
+.||+.|+.+|+.+++. .++++++|++..+.++.+|+.+++++.|.|||+|+++||.+.+||+|.+|.+++..+|| .
T Consensus 290 ~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~ 369 (536)
T KOG0500|consen 290 KLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV 369 (536)
T ss_pred HhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999998 7
Q ss_pred EEEcCCCCeEehhhhhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 005497 573 AVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 642 (693)
Q Consensus 573 ~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~ 642 (693)
...+.+|++|||+++++- +|. ..|+ +|+++|+++..+++++|+++|+-+++++||+-
T Consensus 370 ~~~L~~G~~FGEisIlni--------~g~---~~gN--RRtanvrSvGYSDlfvLskdDl~~aL~eYP~a 426 (536)
T KOG0500|consen 370 FVTLKAGSVFGEISILNI--------KGN---KNGN--RRTANVRSVGYSDLFVLSKDDLWEALSEYPDA 426 (536)
T ss_pred EEEecCCceeeeeEEEEE--------cCc---ccCC--cceeeeeeeccceeeEeeHHHHHHHHHhCCHH
Confidence 899999999999999752 221 1133 58999999999999999999999999999543
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-53 Score=447.04 Aligned_cols=410 Identities=22% Similarity=0.362 Sum_probs=346.7
Q ss_pred CeeEcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecCCcchhHHHHHHHHHHHHHHHHH-hhcceeE
Q 005497 193 PGIMNPHT-RIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNIL-LQFRLAY 270 (693)
Q Consensus 193 ~~ii~P~S-~f~~~Wd~i~~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDIl-l~F~t~y 270 (693)
+..|+|.. +++..|-.+..++..+++|+||+..+|+....+| ...|.+.|++||+|+++|++ ++=|+-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 66999998 9999999999999999999999999999866543 45789999999999999996 4667788
Q ss_pred EcCCccccCCCeEEecHHHHHHHHHhh-hHHHHHHHhcChhh-----------hhHHHHHHHhhhhchhhhhHHhhhccc
Q 005497 271 VAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ-----------RVNQCLRDACHNSSIQDCKKFLDCGHG 338 (693)
Q Consensus 271 ~~~~s~~~~~g~~V~d~k~Ia~~Ylk~-~FiiDlls~iPl~~-----------Rl~rllr~~~~~~~i~~~~h~l~c~~~ 338 (693)
+ ..|.+|.|.+...+||+++ .|-+|++|++|+++ |++|+|+...... +.|.+..+..
T Consensus 288 v-------rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~wR~~R~lK~~sF~e----~~~~Le~i~s 356 (815)
T KOG0499|consen 288 V-------RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMWRANRMLKYTSFFE----FNHHLESIMS 356 (815)
T ss_pred e-------eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhhhhhhHHHHHHHHH----HHHHHHHHhc
Confidence 7 5899999999999999998 79999999999998 8888887754421 1222222110
Q ss_pred cccchhhhcccccccccccccccccccCcccc---c--chhhhccccCCcchHHHHHHHHHHHhhhccccccCCCCCCch
Q 005497 339 NGGAEYSQDQTWKSWSGNQQASDCFEKDKFSY---G--IYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFV 413 (693)
Q Consensus 339 ~i~~~~~~~~~~~~wl~~~~~~~C~~~~~~~~---~--~~~~~~~l~~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~ 413 (693)
-....+..+. ....+..+|..+|+++....| | -|.. +.....|++|+|||+-|++|+|...- |++.
T Consensus 357 ~~y~~RV~rT-~~YmlyilHinacvYY~~SayqglG~~rWVy-------dg~Gn~YiRCyyfa~kt~~tiG~~P~-P~~~ 427 (815)
T KOG0499|consen 357 KAYIYRVIRT-TGYLLYILHINACVYYWASAYQGLGTTRWVY-------DGEGNEYIRCYYFAVKTLITIGGLPE-PQTL 427 (815)
T ss_pred chhhhhhHHH-HHHHHHHHhhhHHHHHHHHhhcccccceeEE-------cCCCCceeeehhhHHHHHHHhcCCCC-cchH
Confidence 0000111111 112455677788885432211 1 1211 22345799999999999999997665 5689
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhCCCChHH
Q 005497 414 GEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDM 493 (693)
Q Consensus 414 ~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~Lp~~Lq~rV~~y~~y~~~~~~~~~e~~ 493 (693)
.|.+|..+--+.|+++||.+||.|-.++.+.++.+++|+..|++.-.||++.+||++.|+||+.+|+|.|.+++..||.+
T Consensus 428 ~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ 507 (815)
T KOG0499|consen 428 FEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESD 507 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHH-HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEe-cCC
Q 005497 494 LFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG 571 (693)
Q Consensus 494 iL~~Lp~~Lr~~I~~~~~~-~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~-~~g 571 (693)
+|+.||..|+.+++..++. .+.++.+|++++.+.+..++.+++.++|.|||+|+++||.+.+||+|..|.|++.. ++|
T Consensus 508 ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~ 587 (815)
T KOG0499|consen 508 LLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDG 587 (815)
T ss_pred HHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999997 566
Q ss_pred --eEEEcCCCCeEehhhhhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhccChhhh
Q 005497 572 --IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQ 649 (693)
Q Consensus 572 --~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~l~~p~~~ 649 (693)
++++|.+|++|||++++.- | |.+ +|+++|+|...|.+++|+++|+.+++..| |.-|
T Consensus 588 ~~Vl~tL~~GsVFGEISLLai---------g------G~n-RRTAnV~a~Gf~nLfvL~KkdLneil~~Y------P~sq 645 (815)
T KOG0499|consen 588 TKVLVTLKAGSVFGEISLLAI---------G------GGN-RRTANVVAHGFANLFVLDKKDLNEILVHY------PDSQ 645 (815)
T ss_pred CEEEEEecccceeeeeeeeee---------c------CCC-ccchhhhhcccceeeEecHhHHHHHHHhC------ccHH
Confidence 8999999999999999742 1 222 58999999999999999999999999999 7766
Q ss_pred hhhh
Q 005497 650 GAIR 653 (693)
Q Consensus 650 ~~~r 653 (693)
+.+|
T Consensus 646 ~iLr 649 (815)
T KOG0499|consen 646 RILR 649 (815)
T ss_pred HHHH
Confidence 6554
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.3e-14 Score=154.07 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=108.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcceeEEcCCccccCCCeEEecHHHHHHHHHhh-hHHHHHHHhcChhh----------
Q 005497 243 WTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ---------- 311 (693)
Q Consensus 243 ~~~~~~~i~~i~diiF~lDIll~F~t~y~~~~s~~~~~g~~V~d~k~Ia~~Ylk~-~FiiDlls~iPl~~---------- 311 (693)
....+.+++.+|.++|.++++++|..+ |+ ..+++|+ --++|++|++||++
T Consensus 238 ~~p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~ 298 (477)
T KOG3713|consen 238 PHPILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGE 298 (477)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 345789999999999999999999533 32 5889998 56999999999988
Q ss_pred ---------------hhHHHHHHHhhh---hchhhhhHHh-hhccccccchhhhcccccccccccccccccccCcccccc
Q 005497 312 ---------------RVNQCLRDACHN---SSIQDCKKFL-DCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGI 372 (693)
Q Consensus 312 ---------------Rl~rllr~~~~~---~~i~~~~h~l-~c~~~~i~~~~~~~~~~~~wl~~~~~~~C~~~~~~~~~~ 372 (693)
|+.|++|++++- +.+..+.|-+ +|..-+ +...+........+. ... .
T Consensus 299 ~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~El-glLllfL~~GI~iFS-----------tlv--Y 364 (477)
T KOG3713|consen 299 SLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYREL-GLLLLFLAVGIVIFS-----------TLV--Y 364 (477)
T ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHH--H
Confidence 333333333331 1121111111 111100 000000000000000 000 0
Q ss_pred hhhhccccCCcchHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 373 YEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMS 452 (693)
Q Consensus 373 ~~~~~~l~~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~ 452 (693)
|... ..+.+.++.--.++|||++|||||||||+.|.|...++++...++.|+++.|+.|..|-+-+.......++.+
T Consensus 365 ~~Ek---~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~ 441 (477)
T KOG3713|consen 365 FAEK---DEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKARE 441 (477)
T ss_pred Hhhh---cCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence 1111 1112235566679999999999999999999999999999999999999999998887776666655444433
No 7
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.33 E-value=1.6e-11 Score=125.87 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=100.8
Q ss_pred HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEe-cCC---eEEEcCCCCeEehhhhh
Q 005497 513 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG---IAVCLSEGDACGEELLT 588 (693)
Q Consensus 513 ~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~-~~g---~~~~l~~Gd~fGe~~ll 588 (693)
+++.+++|..++++.++.+....+.+.|.+|+.|+++|+.++.+|+|.+|.|+++. .+| .+..+.+|++||+.+++
T Consensus 8 ~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~ 87 (236)
T PRK09392 8 RLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVV 87 (236)
T ss_pred HHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHh
Confidence 67889999999999999999999999999999999999999999999999999986 223 78899999999999887
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 005497 589 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 642 (693)
Q Consensus 589 ~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~ 642 (693)
.. . ++.++++|+++|+++.+++++|.+++.++|.+
T Consensus 88 ~~-----------------~--~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l 122 (236)
T PRK09392 88 LD-----------------A--PYLMSARTLTRSRVLMIPAELVREAMSEDPGF 122 (236)
T ss_pred CC-----------------C--CCceEEEEcCceEEEEEeHHHHHHHHHHCHHH
Confidence 42 1 57899999999999999999999999999555
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.28 E-value=7.7e-11 Score=118.38 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=92.9
Q ss_pred ccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEe--cCC---eEEEcCCCCeEehhhhhhhccccc
Q 005497 521 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSS 595 (693)
Q Consensus 521 ~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~--~~g---~~~~l~~Gd~fGe~~ll~~~~~~~ 595 (693)
+.++++.++.++..++.+.|.+|++|+.+|+.++.+|||++|.++++. .+| .+..+.+|++||+..++..
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~----- 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE----- 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccC-----
Confidence 468999999999999999999999999999999999999999999985 445 7789999999999988732
Q ss_pred cccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhc
Q 005497 596 VNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFL 643 (693)
Q Consensus 596 ~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~l 643 (693)
.. ++.++++|.++|+++.+++++|.+++.++|++.
T Consensus 81 ------------~~-~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 115 (211)
T PRK11753 81 ------------GQ-ERSAWVRAKTACEVAEISYKKFRQLIQVNPDIL 115 (211)
T ss_pred ------------CC-CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHH
Confidence 11 467899999999999999999999999995553
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.28 E-value=4.7e-11 Score=106.10 Aligned_cols=103 Identities=25% Similarity=0.414 Sum_probs=92.4
Q ss_pred hcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEec--CC---eEEEcCCCCeEehhhhhhhccc
Q 005497 519 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG---IAVCLSEGDACGEELLTWCLEH 593 (693)
Q Consensus 519 ~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~--~g---~~~~l~~Gd~fGe~~ll~~~~~ 593 (693)
+|..++++.++.++..++.+.|.+|++|+.+|+..+.+|||.+|.++++.. +| .+..+.+|++||+..++..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--- 77 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGN--- 77 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcC---
Confidence 477899999999999999999999999999999999999999999999863 33 7888999999999988632
Q ss_pred cccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhH
Q 005497 594 SSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 640 (693)
Q Consensus 594 ~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p 640 (693)
. ++..+++|.++|+++.|+.++|.+++.++|
T Consensus 78 --------------~--~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 78 --------------G--PRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred --------------C--CCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 1 467899999999999999999999999993
No 10
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.27 E-value=4e-11 Score=102.85 Aligned_cols=85 Identities=27% Similarity=0.333 Sum_probs=76.0
Q ss_pred eeeeCCCCEEEccCCccCeEEEEEeeEEEEEec--CC---eEEEcCCCCeEehhhhhhhccccccccccccccCCCCccc
Q 005497 537 QKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLL 611 (693)
Q Consensus 537 ~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~--~g---~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~ 611 (693)
++.|.+|++|+++|+..+.+|||++|.++++.. +| .+..+.+|++||+..++.. . +
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-----------------~--~ 61 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTG-----------------K--P 61 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHT-----------------S--B
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCC-----------------C--c
Confidence 368999999999999999999999999999873 33 5789999999999998853 1 5
Q ss_pred ceeEEEEcceEEEEEeeHHHHHHHHHHhH
Q 005497 612 CNRTVRCLTNVEAFSLRAADIEEVTSLFA 640 (693)
Q Consensus 612 ~~~tv~Alt~~~l~~L~~~df~~ll~~~p 640 (693)
+.++++|.++|+++.|++++|.++++++|
T Consensus 62 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 62 SPFTVIALTDSEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp BSSEEEESSSEEEEEEEHHHHHHHHHHSH
T ss_pred cEEEEEEccCEEEEEEeHHHHHHHHHhCc
Confidence 78999999999999999999999999995
No 11
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.20 E-value=2.3e-10 Score=102.18 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=93.2
Q ss_pred hcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEec--CC---eEEEcCCCCeEehhhhhhhccc
Q 005497 519 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG---IAVCLSEGDACGEELLTWCLEH 593 (693)
Q Consensus 519 ~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~--~g---~~~~l~~Gd~fGe~~ll~~~~~ 593 (693)
+|..++++.++.++..++.+.|.+|++|+++|+..+.+|||.+|.++++.. +| .+..+.+|++||+..++..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--- 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTN--- 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccC---
Confidence 477899999999999999999999999999999999999999999999863 33 7889999999999988621
Q ss_pred cccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 005497 594 SSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 642 (693)
Q Consensus 594 ~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~ 642 (693)
.. .+...++.|.++|+++.++.+++.+.+..++.+
T Consensus 78 -------------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 112 (120)
T smart00100 78 -------------SR-RAASATAVALELATLLRIDFRDFLQLLQENPQL 112 (120)
T ss_pred -------------CC-cccceEEEEEeeEEEEccCHHHHHHHHHHhHHH
Confidence 11 146789999999999999999999999998433
No 12
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.12 E-value=7.9e-10 Score=113.15 Aligned_cols=110 Identities=16% Similarity=0.257 Sum_probs=92.0
Q ss_pred hhhhhhcccCCHHHHHHHHHHcce-eeeCCCCEEEccCCccCeEEEEEeeEEEEEe--cCC---eEEEcCCCCeEehhhh
Q 005497 514 VKKVRIFALMDEPILDAICERLRQ-KTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 587 (693)
Q Consensus 514 l~~i~~F~~ls~~~l~~L~~~l~~-~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~--~~g---~~~~l~~Gd~fGe~~l 587 (693)
+.+.+.|..++++.++.|....+. +.|.+|+.|+.+||..+.+|||.+|.|+++. .+| ++..+.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 444455557999999999988864 6799999999999999999999999999987 445 6778899999998765
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhc
Q 005497 588 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFL 643 (693)
Q Consensus 588 l~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~l 643 (693)
+. + ....+++|+++++++.|++++|++++..+|.+.
T Consensus 95 ~~-----------------~---~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~ 130 (235)
T PRK11161 95 GS-----------------G---QHPSFAQALETSMVCEIPFETLDDLSGKMPKLR 130 (235)
T ss_pred cC-----------------C---CCcceEEEeccEEEEEEEHHHHHHHHHHChHHH
Confidence 32 1 234689999999999999999999999996653
No 13
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=1.8e-10 Score=119.25 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=99.1
Q ss_pred HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEehhhhhhhcc
Q 005497 513 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLE 592 (693)
Q Consensus 513 ~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~~ll~~~~ 592 (693)
.+++.-+|.+++++.+.++...|.++.+..|+.|++||+.++.+|+|.+|+++++..+.-+..+++|..|||.+++++
T Consensus 123 a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~~v~~~~~g~sFGElALmyn-- 200 (368)
T KOG1113|consen 123 AFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGTYVTTYSPGGSFGELALMYN-- 200 (368)
T ss_pred HHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCeEEeeeCCCCchhhhHhhhC--
Confidence 678888999999999999999999999999999999999999999999999999988778999999999999999864
Q ss_pred ccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHH
Q 005497 593 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSL 638 (693)
Q Consensus 593 ~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~ 638 (693)
. ||.+||.|.+++.+|.|++..|..++-.
T Consensus 201 ------------~-----PRaATv~a~t~~klWgldr~SFrrIi~~ 229 (368)
T KOG1113|consen 201 ------------P-----PRAATVVAKSLKKLWGLDRTSFRRIIMK 229 (368)
T ss_pred ------------C-----CcccceeeccccceEEEeeceeEEEeec
Confidence 2 6899999999999999999999877643
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.09 E-value=1.3e-09 Score=108.60 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=92.1
Q ss_pred hhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEe--cCC---eEEEcCCCCeEehhhhhh
Q 005497 515 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTW 589 (693)
Q Consensus 515 ~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~--~~g---~~~~l~~Gd~fGe~~ll~ 589 (693)
...+.|...+.+....+....+.+.+++|+.|+++|+.++.+|+|.+|.++++. .+| .+..+.+|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 345566667777777777889999999999999999999999999999999987 455 788899999999999974
Q ss_pred hccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 005497 590 CLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 590 ~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~ 639 (693)
. . ++.++++|+++|+++.+++++|.+++.+.
T Consensus 83 ~-----------------~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 113 (214)
T COG0664 83 G-----------------D--PRSASAVALTDVEVLEIPRKDFLELLAES 113 (214)
T ss_pred C-----------------C--CccceEEEcceEEEEEecHHHHHHHHhhC
Confidence 2 1 47899999999999999999999998775
No 15
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.5e-11 Score=126.33 Aligned_cols=164 Identities=13% Similarity=0.155 Sum_probs=96.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcceeEEcCCccccCCCeEEecHHHHHHHHHhh-hHHHHHHHhcChhh----------
Q 005497 243 WTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ---------- 311 (693)
Q Consensus 243 ~~~~~~~i~~i~diiF~lDIll~F~t~y~~~~s~~~~~g~~V~d~k~Ia~~Ylk~-~FiiDlls~iPl~~---------- 311 (693)
.+.++++++.+|.++|.++++++|...-- ..-+.++ --++|++|++|+.+
T Consensus 251 f~dPFFiVEt~CIiWFtfEllvRf~aCPs-------------------K~~Ff~nimNiIDiVaI~PyFitlgtela~q~ 311 (507)
T KOG1545|consen 251 FTDPFFIVETLCIIWFTFELLVRFFACPS-------------------KATFFRNIMNIIDIVAIIPYFITLGTELAEQQ 311 (507)
T ss_pred cCCchHhHHHHHHHHHhHHHHHHHhcCcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 45689999999999999999999954432 2445666 46999999999977
Q ss_pred ------------------hhHHHHHHHhhhhchhhhhHHhhhccccccchhhhcccccccccccccccccccCcccccch
Q 005497 312 ------------------RVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIY 373 (693)
Q Consensus 312 ------------------Rl~rllr~~~~~~~i~~~~h~l~c~~~~i~~~~~~~~~~~~wl~~~~~~~C~~~~~~~~~~~ 373 (693)
||.|++|++++... +.-+.+++-.... ....+..+ ..++.. +.+. |.-..|
T Consensus 312 g~g~~gqqaMSlAILRViRLVRVFRIFKLSRH-SkGLQILGqTl~a-SmrElgLL--IFFlfI----gviL---FsSavY 380 (507)
T KOG1545|consen 312 GGGGQGQQAMSLAILRVIRLVRVFRIFKLSRH-SKGLQILGQTLRA-SMRELGLL--IFFLFI----GVIL---FSSAVY 380 (507)
T ss_pred cCCccchhhhhHHHHHHHHHHHHhhheeeccc-cchHHHHHHHHHH-HHHHHHHH--HHHHHH----HHHH---Hhceee
Confidence 44444444443211 1111111100000 00000000 001100 0000 000001
Q ss_pred hhhccccCCcchHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 374 EQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQ 438 (693)
Q Consensus 374 ~~~~~l~~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~ 438 (693)
-. ...+.++-+..--.|+|||++|||||||||..|.+...+++..+..+.|++-.|..+-.|-
T Consensus 381 FA--Eade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV 443 (507)
T KOG1545|consen 381 FA--EADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV 443 (507)
T ss_pred ee--ecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence 00 1111233344455699999999999999999999999999999999999988887665443
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-10 Score=125.41 Aligned_cols=114 Identities=16% Similarity=0.258 Sum_probs=104.0
Q ss_pred HHHHHH-HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEehh
Q 005497 507 RRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEE 585 (693)
Q Consensus 507 ~~~~~~-~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~ 585 (693)
..++-+ .+....++++++...++.++..|.++.|.+|+.|+++||++..+|.+..|++++...+..+..+++|..|||.
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~ll~~m~~gtvFGEL 227 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGKLLGKMGAGTVFGEL 227 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCeeeeccCCchhhhHH
Confidence 344555 7888899999999999999999999999999999999999999999999999999877799999999999999
Q ss_pred hhhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 005497 586 LLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 586 ~ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~ 639 (693)
+++++. .|+++|+|+|+|.++.|+++.|+.++...
T Consensus 228 AILync-------------------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 228 AILYNC-------------------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred HHHhCC-------------------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 998753 58999999999999999999999998654
No 17
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.07 E-value=1e-09 Score=111.80 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=84.7
Q ss_pred HHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEe--cCC---eEEEcCCCCeEehhhhhhhccccccccccccc
Q 005497 529 DAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRY 603 (693)
Q Consensus 529 ~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~--~~g---~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~ 603 (693)
..|....+.+.|.+|+.|+.+|+.++.+|||.+|.|+++. .+| .+..+.+|++||+.+++..
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~------------- 91 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDK------------- 91 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcC-------------
Confidence 4577788899999999999999999999999999999986 455 6889999999999987632
Q ss_pred cCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhcc
Q 005497 604 RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLR 644 (693)
Q Consensus 604 ~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~l~ 644 (693)
. ++.++++|+++|+++.+++++|.+++..+|.+..
T Consensus 92 ----~--~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~ 126 (226)
T PRK10402 92 ----D--HETKAVQAIEECWCLALPMKDCRPLLLNDALFLR 126 (226)
T ss_pred ----C--CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHH
Confidence 1 5789999999999999999999999999965543
No 18
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=99.06 E-value=2.7e-10 Score=94.19 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=57.9
Q ss_pred CChhhhhhccCChhhHHHHHHHhhhccCCeeEcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005497 165 FDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLL 228 (693)
Q Consensus 165 ~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~ii~P~S~f~~~Wd~i~~i~~l~~~~~iP~~i~F~ 228 (693)
-+||++.++|||++++.+|..+.. +..++||||+|+||.+||++++++++++++++|+.++|.
T Consensus 9 ~~nk~sl~~f~S~~ai~~E~~R~~-~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 9 GDNKFSLRVFGSKKAIEKEKERQR-SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred ccCHHHHHHHccHHHHHHHHHHHh-cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 389999999999999999987765 567899999999999999999999999999999999885
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.05 E-value=4.1e-10 Score=121.17 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=98.9
Q ss_pred HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCC------eEEEcCCCCeEehhh
Q 005497 513 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG------IAVCLSEGDACGEEL 586 (693)
Q Consensus 513 ~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g------~~~~l~~Gd~fGe~~ 586 (693)
+++++|+|.+++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...+. .+..+..||+|||.+
T Consensus 273 fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~a 352 (732)
T KOG0614|consen 273 FLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERA 352 (732)
T ss_pred HHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHH
Confidence 89999999999999999999999999999999999999999999999999999987332 789999999999999
Q ss_pred hhhhccccccccccccccCCCCcccceeEEEEcce-EEEEEeeHHHHHHHHHHh
Q 005497 587 LTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTN-VEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 587 ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~-~~l~~L~~~df~~ll~~~ 639 (693)
++.. . .|++++.|..+ ++++.|+++.|..++-..
T Consensus 353 l~~e------------------d-vRtAniia~~~gv~cl~lDresF~~liG~l 387 (732)
T KOG0614|consen 353 LLGE------------------D-VRTANIIAQAPGVECLTLDRESFKKLIGDL 387 (732)
T ss_pred hhcc------------------C-ccchhhhccCCCceEEEecHHHHHHhcccH
Confidence 9843 2 57999999888 999999999999988766
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.01 E-value=2e-09 Score=117.71 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=104.3
Q ss_pred HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCC-eEEEcCCCCeEehhhhhhhc
Q 005497 513 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCL 591 (693)
Q Consensus 513 ~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g-~~~~l~~Gd~fGe~~ll~~~ 591 (693)
++.+.|.|+.++++.+.+|...++...|.+||+|+..|.+...+|+|.+|.|++..++| .+..+..||.||-.+++...
T Consensus 8 Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l~~~~ 87 (610)
T COG2905 8 FLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSLFTEL 87 (610)
T ss_pred HHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccchhhcccC
Confidence 78899999999999999999999999999999999999999999999999999999998 69999999999999998542
Q ss_pred cccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhccChhhhhhhh
Q 005497 592 EHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIR 653 (693)
Q Consensus 592 ~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~l~~p~~~~~~r 653 (693)
.....+.|.+++.+|.|+++.|.+++.++ |.+++.+.
T Consensus 88 -------------------~~~~~~~aeedsl~y~lp~s~F~ql~~~n------~~f~~ff~ 124 (610)
T COG2905 88 -------------------NKQRYMAAEEDSLCYLLPKSVFMQLMEEN------PEFADFFL 124 (610)
T ss_pred -------------------CCcceeEeeccceEEecCHHHHHHHHHhC------cHHHHHHH
Confidence 12456788889999999999999999999 66555553
No 21
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.98 E-value=3.4e-10 Score=122.38 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 383 NSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWM 462 (693)
Q Consensus 383 ~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym 462 (693)
.+-+..|-.|+||+++|+|||||||.+|++...++++.+..++|..+||..-|.+++=++-.-+.+. + =++|-
T Consensus 264 n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~--R-----QKHf~ 336 (654)
T KOG1419|consen 264 NDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH--R-----QKHFN 336 (654)
T ss_pred cccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH--H-----HHHHH
Confidence 4557789999999999999999999999999999999999999999999999998887654322211 1 13455
Q ss_pred HHcCCCHHHHHHHHHHHH
Q 005497 463 RHRRLPEQLRRQVREAER 480 (693)
Q Consensus 463 ~~~~Lp~~Lq~rV~~y~~ 480 (693)
+.++.-..|.+-.-+||.
T Consensus 337 rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYA 354 (654)
T ss_pred hhcchHHHHHHHHHHHHh
Confidence 666666777777777665
No 22
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.97 E-value=5.1e-09 Score=116.29 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=94.2
Q ss_pred HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEec--CC--eEEEcCCCCeEehhhhh
Q 005497 513 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG--IAVCLSEGDACGEELLT 588 (693)
Q Consensus 513 ~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~--~g--~~~~l~~Gd~fGe~~ll 588 (693)
+++++++|+.++++.++.|+..++.+.|.+|++|+++|+..+.+|+|++|.|+++.. +| .+..+++|++||+. +
T Consensus 9 ~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~--l 86 (413)
T PLN02868 9 FLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG--L 86 (413)
T ss_pred HHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh--h
Confidence 678999999999999999999999999999999999999999999999999999873 33 67788999999975 3
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 005497 589 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 589 ~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~ 639 (693)
. +. ++.++++|.++|+++.|++++|..+....
T Consensus 87 ~-----------------~~--~~~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 87 S-----------------GS--VHSADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred C-----------------CC--CcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 2 11 46899999999999999999999887655
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.85 E-value=7.2e-09 Score=87.50 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 387 TRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQ 442 (693)
Q Consensus 387 ~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~ 442 (693)
..|..|+||+++|+||+||||+.|.+..+++++++.+++|..++++.++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778999999999999999999999999999999999999999999999998875
No 24
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.84 E-value=2.3e-08 Score=98.85 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=71.5
Q ss_pred CCEEEccCCccCeEEEEEeeEEEEEe--cCC---eEEEcCCCCeEehhhhhhhccccccccccccccCCCCcccceeEEE
Q 005497 543 GSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVR 617 (693)
Q Consensus 543 ge~I~~~G~~~~~~yfI~~G~v~v~~--~~g---~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv~ 617 (693)
|+.|+++|+..+.+|+|.+|.|+++. ++| .+..+.+|++||+.+++.. ...++.++++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~-----------------~~~~~~~~~~ 63 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITG-----------------HRSDRFYHAV 63 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccC-----------------CCCccceEEE
Confidence 78999999999999999999999986 456 6889999999999887642 1112457899
Q ss_pred EcceEEEEEeeHHHHHHHHHHhHhhc
Q 005497 618 CLTNVEAFSLRAADIEEVTSLFARFL 643 (693)
Q Consensus 618 Alt~~~l~~L~~~df~~ll~~~p~~l 643 (693)
|+++|+++.+++++|++++.++|++.
T Consensus 64 A~~~~~v~~i~~~~~~~l~~~~p~l~ 89 (193)
T TIGR03697 64 AFTRVELLAVPIEQVEKAIEEDPDLS 89 (193)
T ss_pred EecceEEEEeeHHHHHHHHHHChHHH
Confidence 99999999999999999999996653
No 25
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.83 E-value=2.4e-08 Score=102.01 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=78.5
Q ss_pred HHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEe--cCC---eEEEcCCCCeEehhhhhhhcccccccccccccc
Q 005497 530 AICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYR 604 (693)
Q Consensus 530 ~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~--~~g---~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~ 604 (693)
.++...+.+.|.+|++|+.+||.++.+|||.+|.|+++. .+| .+..+.+|++||+..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~------------------ 94 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES------------------ 94 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC------------------
Confidence 345667889999999999999999999999999999986 455 677889999999642
Q ss_pred CCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhc
Q 005497 605 IPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFL 643 (693)
Q Consensus 605 ~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~l 643 (693)
+. ++.++++|+++|+++.++.++|++++..+|++.
T Consensus 95 --~~--~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~ 129 (230)
T PRK09391 95 --GS--THRFTAEAIVDTTVRLIKRRSLEQAAATDVDVA 129 (230)
T ss_pred --CC--cCCeEEEEcCceEEEEEEHHHHHHHHhhChHHH
Confidence 11 457899999999999999999999999996653
No 26
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.80 E-value=4.4e-08 Score=97.73 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=68.0
Q ss_pred HcceeeeCCCCEEEccCC--ccCeEEEEEeeEEEEEe--cCC---eEEEcCCCCeEehhhhhhhccccccccccccccCC
Q 005497 534 RLRQKTYISGSKILYRGG--LIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIP 606 (693)
Q Consensus 534 ~l~~~~y~~ge~I~~~G~--~~~~~yfI~~G~v~v~~--~~g---~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p 606 (693)
.++.+.|.+|++|+++|| ..+.+|+|++|.|+++. .+| .+..+.+||+||+..++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~----------------- 67 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAG----------------- 67 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcC-----------------
Confidence 467889999999999999 77999999999999986 456 788899999999976541
Q ss_pred CCcccceeEEEEcceEEEEEeeHHHH
Q 005497 607 GQRLLCNRTVRCLTNVEAFSLRAADI 632 (693)
Q Consensus 607 ~~~~~~~~tv~Alt~~~l~~L~~~df 632 (693)
+ ++++++.|+++|+++.|++++|
T Consensus 68 -~--~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 68 -A--ERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred -C--CCCceEEEcCceEEEEEEHHHc
Confidence 1 4678999999999999998876
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=3e-08 Score=102.92 Aligned_cols=112 Identities=22% Similarity=0.365 Sum_probs=100.8
Q ss_pred HHHH-HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEe-cCCeEEEcCCCCeEehhh
Q 005497 509 HLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDGIAVCLSEGDACGEEL 586 (693)
Q Consensus 509 ~~~~-~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~-~~g~~~~l~~Gd~fGe~~ 586 (693)
.++. +|+++|++..+.......++..+.++.|.+|+.|+.+|+.++.+|+|.+|+|.+.. .+|+...+..||+|||.+
T Consensus 236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfge~a 315 (368)
T KOG1113|consen 236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFGELA 315 (368)
T ss_pred hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhhcchHH
Confidence 4566 89999999999999999999999999999999999999999999999999999876 345444999999999999
Q ss_pred hhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 005497 587 LTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 587 ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~ 639 (693)
++..+ ++.++|.|.+...+..+++..|+.++..-
T Consensus 316 l~~~~-------------------pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 316 LLKNL-------------------PRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred HHhhc-------------------hhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 98542 68999999999999999999999998765
No 28
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.67 E-value=1e-08 Score=100.79 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHHhhhccccccCCCCCC-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 005497 383 NSIITRYVYSLFWGFQQISTLAGNQTPSY-----FVGEVLFT-MAIIGVGLLLFAFLIGNM 437 (693)
Q Consensus 383 ~~~~~~Yl~SlYwai~tmtTVGyGdi~p~-----~~~E~i~~-i~i~i~G~~~fa~iig~i 437 (693)
.+....|..|+||++.++|+.|+||+.+. +..+.++. +++++.+.++++.++|.|
T Consensus 140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 45677899999999999999999999987 78999998 666666668899988875
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.61 E-value=7.4e-09 Score=111.86 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 386 ITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMS 452 (693)
Q Consensus 386 ~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~ 452 (693)
...|..|+|+-++||+||||||+...+...++|.++.++.|..+||--+-.|..++.+.++-.-+|+
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk 352 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYK 352 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceee
Confidence 3478899999999999999999999999999999999999999999999999999887765555553
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.36 E-value=6.5e-09 Score=107.86 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=104.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcceeEEcCCccccCCCeEEecHHHHHHHHHhh-hHHHHHHHhcChhh----------
Q 005497 243 WTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ---------- 311 (693)
Q Consensus 243 ~~~~~~~i~~i~diiF~lDIll~F~t~y~~~~s~~~~~g~~V~d~k~Ia~~Ylk~-~FiiDlls~iPl~~---------- 311 (693)
+...++.+|..+-+||..+++|++..+-- +.+++|+ -=++|+++++|+++
T Consensus 225 y~~aFFclDTACVmIFT~EYlLRL~aAPs-------------------R~rF~RSvMSiIDVvAIlPYYigLv~t~N~DV 285 (632)
T KOG4390|consen 225 YPVAFFCLDTACVMIFTGEYLLRLFAAPS-------------------RYRFLRSVMSIIDVVAILPYYIGLVMTDNEDV 285 (632)
T ss_pred cceeeEEecceeEEEeeHHHHHHHHcCch-------------------HHHHHHHHHHHHHHhhhhhhheEEEecCCccc
Confidence 34567888999999999999999965542 5788999 56999999999988
Q ss_pred -------hhHHHHHHHhhhhc---hhhhh-HHhhhccccccchhhhcccccccccccccccccccCcccccchhhhcccc
Q 005497 312 -------RVNQCLRDACHNSS---IQDCK-KFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLT 380 (693)
Q Consensus 312 -------Rl~rllr~~~~~~~---i~~~~-h~l~c~~~~i~~~~~~~~~~~~wl~~~~~~~C~~~~~~~~~~~~~~~~l~ 380 (693)
|++|++|+++.... +..+. .+-+|..-+. ++...-..+-+.+.. .-.|..+ .
T Consensus 286 SGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELG------------FLlFSLtMAIIIFAT--vMfYAEK---g 348 (632)
T KOG4390|consen 286 SGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELG------------FLLFSLTMAIIIFAT--VMFYAEK---G 348 (632)
T ss_pred cceeEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHh------------HHHHHHHHHHHHHHH--HHHhhhc---c
Confidence 77777776654211 11111 1223322110 000000000000000 0001111 1
Q ss_pred CCcchHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 005497 381 TENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFL----IGNMQNFLQA 443 (693)
Q Consensus 381 ~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~i----ig~i~~il~~ 443 (693)
.+.+.+..--.++|+.++||||+||||..|.+...++|..+..+.|+++.|.. +++.+.|..+
T Consensus 349 ~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 349 SSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred ccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 12344555667999999999999999999999999999999999999988874 4556665543
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.99 E-value=1.6e-05 Score=87.38 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 387 TRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFL 441 (693)
Q Consensus 387 ~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il 441 (693)
..+..|+||+++|+|||||||+.|.+...++++++++++|..+|++.++.+...+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999999999999999998877644
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.89 E-value=0.0004 Score=75.00 Aligned_cols=92 Identities=11% Similarity=0.134 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 385 IITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRH 464 (693)
Q Consensus 385 ~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~ 464 (693)
.-..|+.|+|....|..++||||+.|.+...+.++++.-++|+++-|.+++.++.=+. ...--+.|++||..
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999988875443 33333568888888
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 005497 465 RRLPEQLRRQVREAERYNWA 484 (693)
Q Consensus 465 ~~Lp~~Lq~rV~~y~~y~~~ 484 (693)
.+|-+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777776665
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.53 E-value=6.9e-05 Score=86.04 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=83.3
Q ss_pred HHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEec--CC---eEEEcCCCCeEehhhhhhhcccccccccc
Q 005497 526 PILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG---IAVCLSEGDACGEELLTWCLEHSSVNRDA 600 (693)
Q Consensus 526 ~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~--~g---~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~ 600 (693)
.++..+-..+......+|+.+++|||..+++|+|+.|.++.... +| .+..++.||.+|+...++.
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~---------- 568 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTK---------- 568 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhc----------
Confidence 45566666778899999999999999999999999999998763 22 6788999999999998753
Q ss_pred ccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhH
Q 005497 601 KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 640 (693)
Q Consensus 601 ~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p 640 (693)
+ +|..||.|+.++++.+|+.--|..+..+||
T Consensus 569 -------~--~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 569 -------Q--PRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred -------C--CccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 1 578899999999999999999999999993
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00024 Score=78.76 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 388 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVK 446 (693)
Q Consensus 388 ~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 446 (693)
.+..|+|++++++||+|||++.|.|..+++++|+..++|.-++..+++.++..+...-.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999998866543
No 35
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.11 E-value=0.009 Score=59.38 Aligned_cols=94 Identities=9% Similarity=-0.037 Sum_probs=73.9
Q ss_pred HHHHHHHHcceeeeCCCCEE-EccCCccCeEEEEEeeEEEEEecCC-eEEEcCCCCeEehhhhhhhcccccccccccccc
Q 005497 527 ILDAICERLRQKTYISGSKI-LYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYR 604 (693)
Q Consensus 527 ~l~~L~~~l~~~~y~~ge~I-~~~G~~~~~~yfI~~G~v~v~~~~g-~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~ 604 (693)
..+.|....++..+.+|..+ ..........++|++|.|.+...|| .+.+..+-.+||-...+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~~-------------- 79 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMK-------------- 79 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecccccCC--------------
Confidence 44566777788999999997 4433334679999999999976777 6777888889997654421
Q ss_pred CCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 005497 605 IPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 605 ~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~ 639 (693)
. ...+.++|.++|+++.++.++|.++++++
T Consensus 80 --~---~~~~~l~ae~~c~~~~i~~~~~~~iie~~ 109 (207)
T PRK11832 80 --N---DIPYKLISEGNCTGYHLPAKQTITLIEQN 109 (207)
T ss_pred --C---CceEEEEEcCccEEEEeeHHHHHHHHHHh
Confidence 1 23578999999999999999999999998
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.94 E-value=0.017 Score=54.04 Aligned_cols=111 Identities=9% Similarity=0.076 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHH-cceeeeCCCCEEEccC-CccCeEEEEEeeEEEEEecCCeEEEcCCCCeEehhhhhhhcccccccccc
Q 005497 523 MDEPILDAICER-LRQKTYISGSKILYRG-GLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDA 600 (693)
Q Consensus 523 ls~~~l~~L~~~-l~~~~y~~ge~I~~~G-~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~ 600 (693)
.+....+.|+.. .+.....+|+.-.-|| .+.+.+-++++|++.+..++..++.+.+.++...-++....
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~~--------- 85 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESLR--------- 85 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhccc---------
Confidence 477777888777 6678899999988888 56678999999999998876689999999998877775321
Q ss_pred ccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhccChhhhhhhh
Q 005497 601 KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIR 653 (693)
Q Consensus 601 ~~~~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~l~~p~~~~~~r 653 (693)
|+....-..|+.|.++|..++.+|+.+..++... |-++..+.
T Consensus 86 -----~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~------~~L~~vF~ 127 (153)
T PF04831_consen 86 -----PSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKD------PFLAAVFS 127 (153)
T ss_pred -----cCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC------HHHHHHHH
Confidence 0111145789999999999999999999999999 77666664
No 37
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.73 E-value=0.0052 Score=68.76 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=88.6
Q ss_pred HhhhhhhcccCCHHHHHHHHHHcceeee-CCCCEEEccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEehhhhhhhc
Q 005497 513 FVKKVRIFALMDEPILDAICERLRQKTY-ISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCL 591 (693)
Q Consensus 513 ~l~~i~~F~~ls~~~l~~L~~~l~~~~y-~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~~ll~~~ 591 (693)
+..+.|-|.+++-...++||..|-.... .+|.+|+..|+..+..+.|+.|+|++..++|....+.-|+.||..--...
T Consensus 282 FMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGnSFG~~PT~dk- 360 (1283)
T KOG3542|consen 282 FMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGNSFGAEPTPDK- 360 (1283)
T ss_pred HHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeecccccCCCCCcch-
Confidence 6778899999999999999998876554 68999999999999999999999999999998888999999996543210
Q ss_pred cccccccccccccCCCCcccceeEE-EEcceEEEEEeeHHHHHHHHHHh
Q 005497 592 EHSSVNRDAKRYRIPGQRLLCNRTV-RCLTNVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 592 ~~~~~~~~~~~~~~p~~~~~~~~tv-~Alt~~~l~~L~~~df~~ll~~~ 639 (693)
. ...-.+ .-+.+|+..++..+|+..++..-
T Consensus 361 -----------------q-ym~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 361 -----------------Q-YMIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred -----------------h-hhhhhhheecccceEEEeehhhHHHHHHHH
Confidence 0 011122 34789999999999999998765
No 38
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.53 E-value=0.015 Score=67.52 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=79.3
Q ss_pred HHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCC-----eEEEcCCCCeEehhh-hhhhccccccccccccc
Q 005497 530 AICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-----IAVCLSEGDACGEEL-LTWCLEHSSVNRDAKRY 603 (693)
Q Consensus 530 ~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g-----~~~~l~~Gd~fGe~~-ll~~~~~~~~~~~~~~~ 603 (693)
+++..++...+..|++|++.|++.+.+|.+.+|.+++...+| .+....+|+.|-... ++..+ .
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l-----------~ 178 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSL-----------P 178 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhc-----------c
Confidence 444778888999999999999999999999999999987544 788899998776544 33221 1
Q ss_pred cCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 005497 604 RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 642 (693)
Q Consensus 604 ~~p~~~~~~~~tv~Alt~~~l~~L~~~df~~ll~~~p~~ 642 (693)
..|. ..++..++|.++|.+..++...|.++...||+-
T Consensus 179 ~~ps--~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s 215 (1158)
T KOG2968|consen 179 GFPS--LSRTIAAKAATDCTVARIPYTSFRESFHKNPES 215 (1158)
T ss_pred CCCc--ccceeeeeeecCceEEEeccchhhhhhccChHH
Confidence 2222 135778899999999999999999999999443
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.0044 Score=64.39 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhhccccccCCCCCCch--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 388 RYVYSLFWGFQQISTLAGNQTPSYFV--------GEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVK 446 (693)
Q Consensus 388 ~Yl~SlYwai~tmtTVGyGdi~p~~~--------~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 446 (693)
.|..|+|+.++|+||+|+||..+-.. .=+.++.+.+++|..+++..++.+.-.+..++.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 58899999999999999999877422 235788888999999988888877766655543
No 40
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=95.81 E-value=0.014 Score=62.73 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhccccccCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 387 TRYVYSLFWGFQQISTLAGNQ--TPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQN 439 (693)
Q Consensus 387 ~~Yl~SlYwai~tmtTVGyGd--i~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~ 439 (693)
..+..+++|++.|+||||||. ++|....-.++.++-.++|.++.|+++|.+-+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfa 137 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFA 137 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999998 67777777788889999999999999987643
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.0044 Score=64.36 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005497 388 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNM 437 (693)
Q Consensus 388 ~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i 437 (693)
++.-|+|||.+.+||+|||..+|.|+..++|+|+..++|+-+--..+..+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 45669999999999999999999999999999999999986554444443
No 42
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.037 Score=60.79 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHH
Q 005497 390 VYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVG 426 (693)
Q Consensus 390 l~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G 426 (693)
..|+|+.++|.+||||||..|.-..-.++..+++-+.
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icva 255 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVA 255 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHH
Confidence 4589999999999999999997555544444443333
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=93.47 E-value=0.024 Score=62.75 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhccccccCCCCCCchhhH--------HHHHHHHHHHHHHHHHHHH
Q 005497 388 RYVYSLFWGFQQISTLAGNQTPSYFVGEV--------LFTMAIIGVGLLLFAFLIG 435 (693)
Q Consensus 388 ~Yl~SlYwai~tmtTVGyGdi~p~~~~E~--------i~~i~i~i~G~~~fa~iig 435 (693)
-|+.|+|++++++||||+||+.|.+...+ .+..+.+++|....+.+..
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 57889999999999999999999987755 5778888888888877773
No 44
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=92.62 E-value=0.23 Score=53.17 Aligned_cols=56 Identities=9% Similarity=0.233 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhccccccCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 388 RYVYSLFWGFQQISTLAGNQ--TPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQA 443 (693)
Q Consensus 388 ~Yl~SlYwai~tmtTVGyGd--i~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~ 443 (693)
....++-|++-|=||+|||- ++...+.-.+..++-+++|+++-|+++|.+-.=++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45668899999999999997 444455566777777889999999999877554433
No 45
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.94 E-value=3.6 Score=49.00 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=52.1
Q ss_pred CCeeEcCCChHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecCCcchhHHHHHHHHHHHHHHHH
Q 005497 192 VPGIMNPHTRIVQQ---------WKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNI 262 (693)
Q Consensus 192 ~~~ii~P~S~f~~~---------Wd~i~~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDI 262 (693)
-.+++.|.++||.. +|.++++++.++++.+-++-. .. .-...-...+.+-++|+..||+.++
T Consensus 1103 s~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp----~i-----~~~s~EriFltlsnyIFtaIfV~Em 1173 (1956)
T KOG2302|consen 1103 SKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERP----AI-----VEGSTERIFLTLSNYIFTAIFVVEM 1173 (1956)
T ss_pred HHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhccc----cc-----ccCcceEEEEEecchHHHHHHHHHH
Confidence 35689999999865 445555556666655544311 00 0001112233344589999999999
Q ss_pred Hhhcc-eeEEcCCccccCCCeEEecHHHHHHHHHhh-hHHHHHH
Q 005497 263 LLQFR-LAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFF 304 (693)
Q Consensus 263 ll~F~-t~y~~~~s~~~~~g~~V~d~k~Ia~~Ylk~-~FiiDll 304 (693)
.++.. .|.+- | -.-|+++ |-.+|.+
T Consensus 1174 ~lKVVALGl~f--------g---------e~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1174 TLKVVALGLYF--------G---------EQAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHhhhhcc--------c---------hHHHHHHHHHhhhHH
Confidence 98854 45442 2 2789997 8666654
No 46
>PLN03223 Polycystin cation channel protein; Provisional
Probab=88.56 E-value=18 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.3
Q ss_pred ecCCCCCCCCCcccccccCCCCccC
Q 005497 43 TMNSTDSFEPEANLVGLTGPLRNER 67 (693)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (693)
-+.+..+|+-|+.+..|| ||...-
T Consensus 999 ~~~~v~~~GVDPVF~r~s-~lY~~~ 1022 (1634)
T PLN03223 999 GGRDISSYGVDPVFKRGT-PLYKPD 1022 (1634)
T ss_pred CCCCcCccCCCCccccCC-cccCcc
Confidence 347788999999888887 775544
No 47
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.35 E-value=0.72 Score=52.36 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=71.2
Q ss_pred HhhhhhhcccCCHHHHHHHHHHcceeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEehhhhhhhcc
Q 005497 513 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLE 592 (693)
Q Consensus 513 ~l~~i~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~~ll~~~~ 592 (693)
.+.....|.++-..-+++++...+...++...++++.|+.+.+.|++++|.|-+.. ..+-+-..||...
T Consensus 38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----qi~mp~~~fgkr~------ 106 (1283)
T KOG3542|consen 38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----QIYMPYGCFGKRT------ 106 (1283)
T ss_pred HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----ceecCcccccccc------
Confidence 56778889999899999999999999999999999999999999999999986642 2333444566431
Q ss_pred ccccccccccccCCCCcccceeEEEEcceEEEEEee
Q 005497 593 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLR 628 (693)
Q Consensus 593 ~~~~~~~~~~~~~p~~~~~~~~tv~Alt~~~l~~L~ 628 (693)
|+ .|+.++-.++.+|..+++
T Consensus 107 --------------g~--~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 107 --------------GQ--NRTHNCLLLQESEMIVID 126 (1283)
T ss_pred --------------cc--ccccceeeecccceeeee
Confidence 33 367888889999998884
No 48
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=80.26 E-value=3 Score=33.42 Aligned_cols=45 Identities=27% Similarity=0.240 Sum_probs=34.9
Q ss_pred eeeCCCCEEEccCCccC-eEEEEEeeEEEEEecCCeEEEcCCCCeEe
Q 005497 538 KTYISGSKILYRGGLIE-KMVFIVRGKMESIGEDGIAVCLSEGDACG 583 (693)
Q Consensus 538 ~~y~~ge~I~~~G~~~~-~~yfI~~G~v~v~~~~g~~~~l~~Gd~fG 583 (693)
..+.||+..-..-.... .+++|++|++++. .+|....+.+||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGERVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEEEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEEeEccCCEEEE
Confidence 46788887665555555 8999999999998 566778899988764
No 49
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=77.00 E-value=8.1 Score=37.78 Aligned_cols=56 Identities=23% Similarity=0.468 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh--hCCCChHHHHhcC--ChhHHHHHHHH
Q 005497 452 SLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAA--TRGVNEDMLFTNL--PEDLQREIRRH 509 (693)
Q Consensus 452 ~~~~~~v~~ym~~~~Lp~~Lq~rV~~y~~y~~~~--~~~~~e~~iL~~L--p~~Lr~~I~~~ 509 (693)
++-+++++.+++ ++|++-++.+.+||+-.... ..|.+|+++.++| |..+-+++..+
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 345677888886 69999999999999988764 4577899999997 56666666644
No 50
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=73.70 E-value=6.2 Score=32.58 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.3
Q ss_pred CeEEEEEeeEEEEEecCCeEEEcCCCCeEe
Q 005497 554 EKMVFIVRGKMESIGEDGIAVCLSEGDACG 583 (693)
Q Consensus 554 ~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fG 583 (693)
+++.+|++|.|.+..++|....+.+||.|=
T Consensus 26 ~E~~~vleG~v~it~~~G~~~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGETVTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEETTTEEEEEETTEEEE
T ss_pred CEEEEEEEeEEEEEECCCCEEEEcCCcEEE
Confidence 788899999999999999889999999875
No 51
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=72.54 E-value=19 Score=33.12 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=35.4
Q ss_pred ceeeeCCCCEEEccCCccCeEEEEEeeEEEEE-ecCCeEEEcCCCCeEeh
Q 005497 536 RQKTYISGSKILYRGGLIEKMVFIVRGKMESI-GEDGIAVCLSEGDACGE 584 (693)
Q Consensus 536 ~~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~-~~~g~~~~l~~Gd~fGe 584 (693)
....+.||..+-..-....++++|++|++.+. ..+|....+.+||.+--
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~ 87 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYAL 87 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEE
Confidence 34577888765432212247999999999998 45578899999998863
No 52
>COG4709 Predicted membrane protein [Function unknown]
Probab=71.05 E-value=20 Score=35.01 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh--hCCCChHHHHhcC--ChhHHHHHHHHH
Q 005497 453 LRRRDVEQWMRHRRLPEQLRRQVREAERYNWAA--TRGVNEDMLFTNL--PEDLQREIRRHL 510 (693)
Q Consensus 453 ~~~~~v~~ym~~~~Lp~~Lq~rV~~y~~y~~~~--~~~~~e~~iL~~L--p~~Lr~~I~~~~ 510 (693)
+-++++++|++ ++|++.++.+..||+-.+.. ..|.+|+++..+| |.++-.|+..+.
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~ 64 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSER 64 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHc
Confidence 44677888885 79999999999999877763 3577899999987 455666665443
No 53
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.76 E-value=13 Score=34.42 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 384 SIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMR 463 (693)
Q Consensus 384 ~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~ 463 (693)
........++++.+.+++. +.++..|.+...+++.+++.+++.++.++-.+++++++..... +..++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHH
Confidence 4455677788888877776 6677999999999999999999999999999999998865432 223455555555
Q ss_pred Hc
Q 005497 464 HR 465 (693)
Q Consensus 464 ~~ 465 (693)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 54
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.94 E-value=37 Score=40.29 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=59.3
Q ss_pred HHHHhhhc--cccccCCCCCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 005497 393 LFWGFQQI--STLAGNQTPSYFVG------EVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR-LDMSLRRRDVEQWMR 463 (693)
Q Consensus 393 lYwai~tm--tTVGyGdi~p~~~~------E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~v~~ym~ 463 (693)
+.-++.++ .|+|+||.+..... -.+|.++++++..+++-.+|+.|++........+ .+.+.+... .-.|-
T Consensus 591 ~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~l 669 (782)
T KOG3676|consen 591 FSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILML 669 (782)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHH
Confidence 33344444 58999998765332 3467777788888888999999999998887666 566655443 44677
Q ss_pred HcCCCHHHHHHHH
Q 005497 464 HRRLPEQLRRQVR 476 (693)
Q Consensus 464 ~~~Lp~~Lq~rV~ 476 (693)
++.+|+.++.+-+
T Consensus 670 Ers~p~~~r~~~~ 682 (782)
T KOG3676|consen 670 ERSLPPALRKRFR 682 (782)
T ss_pred HhcCCHHHHHHHh
Confidence 8899999988733
No 55
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.26 E-value=4.2e+02 Score=33.81 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCHHH
Q 005497 417 LFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDM--SLRRRDVEQWMRHRRLPEQL 471 (693)
Q Consensus 417 i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~--~~~~~~v~~ym~~~~Lp~~L 471 (693)
+.++++.+.-.++.-.+|+.++.++.+......++ -++...|.+|=.+=-||+.+
T Consensus 1018 Ll~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPf 1074 (1381)
T KOG3614|consen 1018 LLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPF 1074 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 34444445555666667777777777665544443 35666777777666666543
No 56
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=51.90 E-value=29 Score=31.71 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=42.3
Q ss_pred cceeeeCCCCEEEccCCc-cCeEEEEEeeEEEEEecCCeEEEcCCCCeEehhh
Q 005497 535 LRQKTYISGSKILYRGGL-IEKMVFIVRGKMESIGEDGIAVCLSEGDACGEEL 586 (693)
Q Consensus 535 l~~~~y~~ge~I~~~G~~-~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~~ 586 (693)
+....+.||+.+-..-.+ .+...+|++|.+++... |....+.+||++-...
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEECC
Confidence 446778999999877776 77899999999999877 8788999999987543
No 57
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=46.18 E-value=31 Score=30.77 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhh----------CCCChHHHHhcCChhHHHHHHHH
Q 005497 466 RLPEQLRRQVREAERYNWAAT----------RGVNEDMLFTNLPEDLQREIRRH 509 (693)
Q Consensus 466 ~Lp~~Lq~rV~~y~~y~~~~~----------~~~~e~~iL~~Lp~~Lr~~I~~~ 509 (693)
-||+++|..|..++.-.-... ...+...+|..||+.||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 489999999999888654321 12345689999999999999754
No 58
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=45.63 E-value=69 Score=25.14 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 005497 415 EVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKR---RLDMSLRRRDVEQWMR 463 (693)
Q Consensus 415 E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~---~~~~~~~~~~v~~ym~ 463 (693)
..+|.++++++-+++++..-+-+-.++.+.+.+ ....++|++.+-+.+.
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 345555444443333333333344444443322 2357888888777654
No 59
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=45.03 E-value=99 Score=33.98 Aligned_cols=67 Identities=7% Similarity=0.187 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHhhhccccccCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 384 SIITRYVYSLFWGFQQISTLAGNQT--PSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMS 452 (693)
Q Consensus 384 ~~~~~Yl~SlYwai~tmtTVGyGdi--~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~ 452 (693)
...--|+-++-+++..+.+++.++. .|. .. ..+++++.+++.+.|.+.|.+++..++--+--..-.+
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~-~~-~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~ 164 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPR-LS-VFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEE 164 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcc-hH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4456788899999999988885554 443 23 8888888899999999999999888765554443333
No 60
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=41.06 E-value=74 Score=29.07 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=36.0
Q ss_pred HcceeeeCCCCEE-EccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEe
Q 005497 534 RLRQKTYISGSKI-LYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 583 (693)
Q Consensus 534 ~l~~~~y~~ge~I-~~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fG 583 (693)
......+.||+.+ .+.-...++.|+|++|...+... +....+++||.+=
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-~~~~~v~~gd~~~ 86 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-GEEVEVKAGDSVY 86 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-CEEEEecCCCEEE
Confidence 3556778888885 44444578999999999998775 4556677877653
No 61
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=39.44 E-value=2.6e+02 Score=32.28 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=25.7
Q ss_pred HhcCChhHHHHHHHHHHH--Hh-hh---hhhcccCCHHHHHHHHHHcceeeeCC
Q 005497 495 FTNLPEDLQREIRRHLFK--FV-KK---VRIFALMDEPILDAICERLRQKTYIS 542 (693)
Q Consensus 495 L~~Lp~~Lr~~I~~~~~~--~l-~~---i~~F~~ls~~~l~~L~~~l~~~~y~~ 542 (693)
|.+.|+.|-+.++.++.. .. +. -..+.-++.+....||-++..+.|..
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnE 552 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNE 552 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhcc
Confidence 446888888888877644 11 11 12233344455555555555554443
No 62
>PF15028 PTCRA: Pre-T-cell antigen receptor; PDB: 3OF6_E.
Probab=37.05 E-value=14 Score=33.45 Aligned_cols=39 Identities=41% Similarity=0.488 Sum_probs=22.9
Q ss_pred cccceeeeecCCCCCCCCCcccccccCCCC--ccCCCcceeccc
Q 005497 35 TRSASMSITMNSTDSFEPEANLVGLTGPLR--NERRTQFLQMSG 76 (693)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 76 (693)
|.=|-+|.|-..++.+| .+|-||||=. ..|.|+=.|.||
T Consensus 68 tslaqLSlpsEelaaWE---~LVCHtgPg~~~~~~sT~PLqLsg 108 (154)
T PF15028_consen 68 TSLAQLSLPSEELAAWE---PLVCHTGPGAGGHSRSTQPLQLSG 108 (154)
T ss_dssp EEEEEEEEETTCGGGS----SBEEEE--TTSSS-EE---B----
T ss_pred eeeehhcCCHHHhhccc---ceeeecCCCCCCCCCCCCceEecc
Confidence 55678999998888998 8999999973 345777778887
No 63
>COG4325 Predicted membrane protein [Function unknown]
Probab=34.12 E-value=2.6e+02 Score=30.67 Aligned_cols=63 Identities=5% Similarity=0.125 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHHHhhhccccc-----cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497 383 NSIITRYVYSLFWGFQQISTLA-----GNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKR 447 (693)
Q Consensus 383 ~~~~~~Yl~SlYwai~tmtTVG-----yGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~ 447 (693)
......++-.|-+++..+.||| +|-..|. .-...+++..+++.+.+-|.+..++..++--+.-
T Consensus 127 qvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp~--~avtv~lLlaiisig~~iyfl~~l~~siq~~n~i 194 (464)
T COG4325 127 QVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIPK--VAVTVSLLLAIISIGALIYFLHHLMHSIQIDNII 194 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccccceeh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999998 3445554 4455666667777777888888877666554443
No 64
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=33.70 E-value=20 Score=22.77 Aligned_cols=10 Identities=60% Similarity=1.404 Sum_probs=8.4
Q ss_pred CCCCCCCCCC
Q 005497 137 GMCNDPYCTT 146 (693)
Q Consensus 137 ~~~~~~~~~~ 146 (693)
|.|||+.|..
T Consensus 10 g~Cnd~~C~~ 19 (23)
T PF10650_consen 10 GVCNDPDCEF 19 (23)
T ss_pred CeeCCCCCCc
Confidence 4899999976
No 65
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.56 E-value=92 Score=40.64 Aligned_cols=47 Identities=23% Similarity=0.481 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcceeEEcCCccccCCCeEEecHHHHHHHHHhh-hHHHHHHHhcCh
Q 005497 243 WTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPL 309 (693)
Q Consensus 243 ~~~~~~~i~~i~diiF~lDIll~F~t~y~~~~s~~~~~g~~V~d~k~Ia~~Ylk~-~FiiDlls~iPl 309 (693)
....+...|+++..+|+++++++.. +| | ..-|+++ |.++|++.++=.
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~i-a~----------G---------f~~y~rn~w~~lDf~Vv~vs 917 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWI-AY----------G---------FFFYFRNAWNWLDFVVVIVS 917 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-Hh----------H---------HHHHHhhHHhhhhHHHhhhH
Confidence 4567889999999999999999963 33 2 1229998 899999866543
No 66
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=29.75 E-value=1.3e+02 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=27.0
Q ss_pred CeEEEEEeeEEEEEecCCeEEEcCCCCeEe
Q 005497 554 EKMVFIVRGKMESIGEDGIAVCLSEGDACG 583 (693)
Q Consensus 554 ~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fG 583 (693)
++..-|++|.+++..++|....+.+||.|=
T Consensus 64 ~E~chil~G~v~~T~d~Ge~v~~~aGD~~~ 93 (116)
T COG3450 64 DEFCHILEGRVEVTPDGGEPVEVRAGDSFV 93 (116)
T ss_pred ceEEEEEeeEEEEECCCCeEEEEcCCCEEE
Confidence 678899999999998889889999999874
No 67
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=29.48 E-value=2e+02 Score=28.45 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=38.5
Q ss_pred hcCChhHHHHHHHHHHH-Hhhhhhhc-ccCCHHHHHHHHHHcceee--eCCCCEEEccCCccC
Q 005497 496 TNLPEDLQREIRRHLFK-FVKKVRIF-ALMDEPILDAICERLRQKT--YISGSKILYRGGLIE 554 (693)
Q Consensus 496 ~~Lp~~Lr~~I~~~~~~-~l~~i~~F-~~ls~~~l~~L~~~l~~~~--y~~ge~I~~~G~~~~ 554 (693)
..+|.. ...+...+.. ++...-.| ...++...........+.. +.+|+.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 355555 3333334444 44443344 3456677788888888888 999999999999775
No 68
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=28.57 E-value=1.3e+02 Score=28.82 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCCCEE-EccCCccCeEEEEEeeEEEEEecC-C--eEEEcCCCCeEe
Q 005497 541 ISGSKI-LYRGGLIEKMVFIVRGKMESIGED-G--IAVCLSEGDACG 583 (693)
Q Consensus 541 ~~ge~I-~~~G~~~~~~yfI~~G~v~v~~~~-g--~~~~l~~Gd~fG 583 (693)
-||+.. ++..+ .++++++++|.+.+-..+ | ....+.+||+|=
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fl 81 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFL 81 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcCCcEEEEEECCCCEEE
Confidence 344433 55544 789999999999986533 4 478899999874
No 69
>PRK11171 hypothetical protein; Provisional
Probab=28.53 E-value=1.3e+02 Score=31.26 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=39.8
Q ss_pred HcceeeeCCCCEEEc-cCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEe
Q 005497 534 RLRQKTYISGSKILY-RGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 583 (693)
Q Consensus 534 ~l~~~~y~~ge~I~~-~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fG 583 (693)
.+....+.||..+-. .....++.++|++|++.+.. +|....+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-~~~~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-NNDWVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-CCEEEEeCCCCEEE
Confidence 466788999999876 35666789999999999864 56788899999875
No 70
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=28.35 E-value=2.4e+02 Score=24.65 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=41.4
Q ss_pred eeeCCCCEEEccCCccCeEEEEEeeEEEEEecCC-eEEEcCCCCeEehhhhhhhccccccccccccccCCCCcccceeEE
Q 005497 538 KTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTV 616 (693)
Q Consensus 538 ~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g-~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~~~~tv 616 (693)
-...||++=+ |....+..=|++|.+++..++. ....+.+|+.|--. + .+...+
T Consensus 28 GVm~pGeY~F--~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~Vp---------------------a---nssF~v 81 (94)
T PF06865_consen 28 GVMLPGEYTF--GTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVP---------------------A---NSSFDV 81 (94)
T ss_dssp EEE-SECEEE--EESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE----------------------T---TEEEEE
T ss_pred EEEeeeEEEE--cCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEEC---------------------C---CCeEEE
Confidence 4567888655 4455678899999999988655 67889999998743 2 357888
Q ss_pred EEcceEEEEE
Q 005497 617 RCLTNVEAFS 626 (693)
Q Consensus 617 ~Alt~~~l~~ 626 (693)
++.+.+.-+|
T Consensus 82 ~v~~~~~Y~C 91 (94)
T PF06865_consen 82 KVKEPTAYLC 91 (94)
T ss_dssp EESS-EEEEE
T ss_pred EECcceeeEE
Confidence 8887776554
No 71
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=27.50 E-value=6e+02 Score=24.92 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=17.9
Q ss_pred HHhcChhhhhHHHHHHHhhhhch-hhhhHHhhhcc
Q 005497 304 FVALPLPQRVNQCLRDACHNSSI-QDCKKFLDCGH 337 (693)
Q Consensus 304 ls~iPl~~Rl~rllr~~~~~~~i-~~~~h~l~c~~ 337 (693)
+-++|++.|+-|-+-.+-..+.. ....|.+.|..
T Consensus 21 il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~ 55 (192)
T COG5374 21 ILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITF 55 (192)
T ss_pred HHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 44788888777755443332221 23345555544
No 72
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=27.37 E-value=1.2e+02 Score=28.27 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred cceeeeCCCCEEEccCCc-cCeEEEEEeeEEEEEecC--C---eEEEcCCCCeEeh
Q 005497 535 LRQKTYISGSKILYRGGL-IEKMVFIVRGKMESIGED--G---IAVCLSEGDACGE 584 (693)
Q Consensus 535 l~~~~y~~ge~I~~~G~~-~~~~yfI~~G~v~v~~~~--g---~~~~l~~Gd~fGe 584 (693)
+....+.||...-..-.. .+++++|++|...+...+ | ....+.+||.+=.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 445677888876544332 568999999999987532 2 4678999997754
No 73
>PRK11677 hypothetical protein; Provisional
Probab=26.16 E-value=4.5e+02 Score=24.50 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 005497 472 RRQVREAERYN 482 (693)
Q Consensus 472 q~rV~~y~~y~ 482 (693)
++.|.+||...
T Consensus 49 kqeV~~HFa~T 59 (134)
T PRK11677 49 RQELVSHFARS 59 (134)
T ss_pred HHHHHHHHHHH
Confidence 55666666643
No 74
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=25.31 E-value=5.4e+02 Score=25.06 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-H-HHHHHHHHHHHHHHHHHHHcCCCH
Q 005497 408 TPSYFVGEVLFTMAIIGVGLLLFAFLIGN-MQNFLQAL-V-KRRLDMSLRRRDVEQWMRHRRLPE 469 (693)
Q Consensus 408 i~p~~~~E~i~~i~i~i~G~~~fa~iig~-i~~il~~~-~-~~~~~~~~~~~~v~~ym~~~~Lp~ 469 (693)
..+.--.+-++.+.++.+++...++++|- +++.+=.+ + +...++..|-.+.-+-++++++++
T Consensus 68 ~~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 68 TQQIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred cccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 33333467788888899999999999984 33332222 2 223344444444555555566554
No 75
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.97 E-value=6.1e+02 Score=30.57 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCCCChHHHHhcCChhHHHHHHHHH
Q 005497 465 RRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL 510 (693)
Q Consensus 465 ~~Lp~~Lq~rV~~y~~y~~~~~~~~~e~~iL~~Lp~~Lr~~I~~~~ 510 (693)
++||++||+.|..|+-+..-+ .--+++.+++.+-..|...+
T Consensus 402 ~~LP~~LR~dI~~hL~~~lv~-----~vpLF~~md~~~L~al~~rl 442 (727)
T KOG0498|consen 402 QSLPKDLRRDIKRHLCLDLVR-----KVPLFAGMDDGLLDALCSRL 442 (727)
T ss_pred HhCCHHHHHHHHHHHhHHHHh-----hCchhhcCCHHHHHHHHHHh
Confidence 679999999999999776532 22345555555555555443
No 76
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.47 E-value=1.6e+02 Score=28.12 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=35.6
Q ss_pred eeeeCCCCE--EEccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEehhh
Q 005497 537 QKTYISGSK--ILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEEL 586 (693)
Q Consensus 537 ~~~y~~ge~--I~~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fGe~~ 586 (693)
...++||.. ..+.-...+++++|++|+..+..++ ....+.+||+.|--+
T Consensus 46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~-~e~~lrpGD~~gFpA 96 (161)
T COG3837 46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG-GETRLRPGDSAGFPA 96 (161)
T ss_pred eEEeCCCCccccccccccCceEEEEEcCceEEEECC-eeEEecCCceeeccC
Confidence 345566543 5555667789999999999877544 557799999998543
No 77
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=24.15 E-value=1.4e+02 Score=26.57 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhh---------CCC----ChHHHHhcCChhHHHHHHHHHHH
Q 005497 466 RLPEQLRRQVREAERYNWAAT---------RGV----NEDMLFTNLPEDLQREIRRHLFK 512 (693)
Q Consensus 466 ~Lp~~Lq~rV~~y~~y~~~~~---------~~~----~e~~iL~~Lp~~Lr~~I~~~~~~ 512 (693)
-||.++|.+|..-+...-... ..- -..++|.-||++||.+|......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~ 67 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERR 67 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHH
Confidence 478999999855443321100 000 03589999999999999876544
No 78
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.69 E-value=1.1e+03 Score=29.56 Aligned_cols=75 Identities=15% Similarity=0.311 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecC--CcchhHHHHHHHHHHHHHHHHHhhcc-eeEEcCCccccCCCe
Q 005497 206 WKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINW--PWTKAIVVVRSMTDLIYFLNILLQFR-LAYVAPESRVVGAGE 282 (693)
Q Consensus 206 Wd~i~~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~--~~~~~~~~i~~i~diiF~lDIll~F~-t~y~~~~s~~~~~g~ 282 (693)
++.+-+++++++++.+-++ .-|-.++- +.-..+..+|-++-++|.++++++.. .|.+..
T Consensus 81 fe~vsmlvillncvtlgmf---------rpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifgk--------- 142 (1956)
T KOG2302|consen 81 FECVSMLVILLNCVTLGMF---------RPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFGK--------- 142 (1956)
T ss_pred HHHHHHHHHHHhhhhhccc---------ccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------
Confidence 4677777778877765442 11222221 22356788888899999999999975 566542
Q ss_pred EEecHHHHHHHHHhh-hHHHHHHHhc
Q 005497 283 LVDHPKKIALNYLRG-YFFIDFFVAL 307 (693)
Q Consensus 283 ~V~d~k~Ia~~Ylk~-~FiiDlls~i 307 (693)
+-||-. |--+|++-++
T Consensus 143 ---------kcylgdtwnrldffiv~ 159 (1956)
T KOG2302|consen 143 ---------KCYLGDTWNRLDFFIVM 159 (1956)
T ss_pred ---------cccccCchhhhhhhhee
Confidence 667754 7677766554
No 79
>PRK10579 hypothetical protein; Provisional
Probab=22.73 E-value=4.4e+02 Score=22.99 Aligned_cols=46 Identities=7% Similarity=0.060 Sum_probs=34.9
Q ss_pred eeeeCCCCEEEccCCccCeEEEEEeeEEEEEecCC-eEEEcCCCCeEeh
Q 005497 537 QKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGE 584 (693)
Q Consensus 537 ~~~y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g-~~~~l~~Gd~fGe 584 (693)
.-...|||+-+ |....+..=|++|.+++..++. ....+.+|+.|--
T Consensus 27 lGVm~pGey~F--~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~V 73 (94)
T PRK10579 27 VGVMAEGEYTF--STAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNV 73 (94)
T ss_pred EEEEeeeEEEE--cCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEE
Confidence 34567788544 5566788899999999987655 6778999999873
No 80
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=22.57 E-value=1.1e+02 Score=18.41 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 005497 663 AAIVIQVAWRYRKKRLN 679 (693)
Q Consensus 663 a~~~~q~~~~~~~~r~~ 679 (693)
|+..+|..||.+..|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67889999999987764
No 81
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=22.01 E-value=1.4e+02 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=18.8
Q ss_pred HHcCCCHHHHHHHHHHHHHHHH
Q 005497 463 RHRRLPEQLRRQVREAERYNWA 484 (693)
Q Consensus 463 ~~~~Lp~~Lq~rV~~y~~y~~~ 484 (693)
-..+||.+|++.|.+|.+|..+
T Consensus 7 lfqkLPDdLKrEvldY~EfLle 28 (65)
T COG5559 7 LFQKLPDDLKREVLDYIEFLLE 28 (65)
T ss_pred HHHHCcHHHHHHHHHHHHHHHH
Confidence 3468999999999999999875
No 82
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=21.53 E-value=1.7e+02 Score=30.47 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=39.4
Q ss_pred HHcceeeeCCCCEEE-ccCCccCeEEEEEeeEEEEEecCCeEEEcCCCCeEe
Q 005497 533 ERLRQKTYISGSKIL-YRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 583 (693)
Q Consensus 533 ~~l~~~~y~~ge~I~-~~G~~~~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fG 583 (693)
..+...++.||..+- ++-...++.++|++|+... ..||....+.+||++=
T Consensus 179 ~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~-~~~g~~~~V~~GD~i~ 229 (260)
T TIGR03214 179 MNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVY-NLDNNWVPVEAGDYIW 229 (260)
T ss_pred cEEEEEEECCCcccCCcccccceeEEEEEeceEEE-EECCEEEEecCCCEEE
Confidence 456678899999994 4555567899999999876 4567888999999864
No 83
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.53 E-value=1.6e+02 Score=20.47 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCH-----HHHHHHHHHH
Q 005497 454 RRRDVEQWMRHRRLPE-----QLRRQVREAE 479 (693)
Q Consensus 454 ~~~~v~~ym~~~~Lp~-----~Lq~rV~~y~ 479 (693)
++.++.++++.++||. +|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4577889999999985 6888888874
No 84
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=21.45 E-value=2.8e+02 Score=27.46 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=33.7
Q ss_pred ceeeeCCCCEE---------EccCCccCeEEEEEeeEEEEEec--CC--eEEEcCCCCeEeh
Q 005497 536 RQKTYISGSKI---------LYRGGLIEKMVFIVRGKMESIGE--DG--IAVCLSEGDACGE 584 (693)
Q Consensus 536 ~~~~y~~ge~I---------~~~G~~~~~~yfI~~G~v~v~~~--~g--~~~~l~~Gd~fGe 584 (693)
-...+.||... +++.....++|+|++|+..+... +| ....+.+||.+=-
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~I 132 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYV 132 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEE
Confidence 35567787753 34443445999999999888753 33 4678899988653
No 85
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.45 E-value=3.7e+02 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005497 426 GLLLFAFLIGNMQNFLQALV---KRRLDMSLRRRDVEQWMRH 464 (693)
Q Consensus 426 G~~~fa~iig~i~~il~~~~---~~~~~~~~~~~~v~~ym~~ 464 (693)
+.++-|.++|.+.++++..- ++-.++|+.+++.++.+++
T Consensus 49 vilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~e 90 (201)
T COG1422 49 VILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777776653 3334555666555555543
No 86
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.80 E-value=1.4e+02 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=23.3
Q ss_pred CeEEEEEeeEEEEEecCCeEEEcCCCCeEe
Q 005497 554 EKMVFIVRGKMESIGEDGIAVCLSEGDACG 583 (693)
Q Consensus 554 ~~~yfI~~G~v~v~~~~g~~~~l~~Gd~fG 583 (693)
+++.+|++|++.+. .+|......+||++=
T Consensus 96 DEi~~VlEG~L~i~-~~G~~~~A~~GDvi~ 124 (152)
T PF06249_consen 96 DEIKYVLEGTLEIS-IDGQTVTAKPGDVIF 124 (152)
T ss_dssp EEEEEEEEEEEEEE-ETTEEEEEETT-EEE
T ss_pred ceEEEEEEeEEEEE-ECCEEEEEcCCcEEE
Confidence 78999999999987 457778888988764
No 87
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.37 E-value=53 Score=25.78 Aligned_cols=18 Identities=22% Similarity=0.650 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhcccccc
Q 005497 388 RYVYSLFWGFQQISTLAG 405 (693)
Q Consensus 388 ~Yl~SlYwai~tmtTVGy 405 (693)
||+.+++|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 688999999988877775
Done!