Query 005497
Match_columns 693
No_of_seqs 289 out of 2589
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:25:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005497.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2004-2008//hhsearch_pdb/005497hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 1.0 1 1 261.6 8.3 323 196-652 3-341 (355)
2 3ukn_A Novel protein similar t 1.0 1 1 240.4 17.1 190 438-651 1-191 (212)
3 3bpz_A Potassium/sodium hyperp 1.0 1 1 231.0 24.2 185 442-652 2-187 (202)
4 2ptm_A Hyperpolarization-activ 1.0 1 1 229.8 23.8 185 442-652 1-187 (198)
5 2r9r_B Paddle chimera voltage 1.0 1 1 163.1 7.3 283 196-520 173-499 (514)
6 1orq_C Potassium channel; volt 1.0 1 1 157.8 14.2 195 205-444 9-221 (223)
7 4f8a_A Potassium voltage-gated 1.0 1 1 142.1 15.4 135 491-642 5-140 (160)
8 3shr_A CGMP-dependent protein 1.0 1 1 126.6 14.3 110 511-639 155-271 (299)
9 3ocp_A PRKG1 protein; serine/t 1.0 1 1 126.6 12.9 125 497-640 7-132 (139)
10 4f7z_A RAP guanine nucleotide 1.0 1 1 118.9 14.9 111 510-639 335-448 (999)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=1.00 E-value=1 Score=261.56 Aligned_cols=323 Identities=17% Similarity=0.158 Sum_probs=218.4
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 74898679998999999999999999888776301356721431477520578999998999999997660230772775
Q 005497 196 MNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPES 275 (693)
Q Consensus 196 i~P~S~f~~~Wd~i~~i~~l~~~~~iPl~i~f~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDIil~F~t~y~~~~~ 275 (693)
+.|+|+. .+.+++++++++++++-+.. .+. ........+..++.++.++|++|+++++.... +
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t-~~~---------~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~-~--- 65 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAALT-IPD---------MSGRSRLALAALLAVIWGAYLLQLAATLLKRR-A--- 65 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHHT-SSS---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-S---
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHHHC-CCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C---
T ss_conf 8843679---99999999999999999973-613---------32568999999896777999999989012123-2---
Q ss_pred CCCCCCEEEECHHHHHHHHHHH-HHHHHHHHH-CCHHH------------HHHHHHHHHHHHHCHHHHHHHHH-HCCCCC
Q ss_conf 4347985986598999999856-679999972-68356------------66899998753201023467863-104555
Q 005497 276 RVVGAGELVDHPKKIALNYLRG-YFFIDFFVA-LPLPQ------------RVNQCLRDACHNSSIQDCKKFLD-CGHGNG 340 (693)
Q Consensus 276 ~~~~~G~iV~d~k~I~~~Ylks-~FiiDlis~-iPl~~------------Rl~rllr~~~~~~~i~~~~h~l~-c~~~~~ 340 (693)
...|.++ |.++|++++ +|+.. |+.|++|+.+....+......+. +.....
T Consensus 66 ---------------~~~~~~~~~~i~Dl~~i~~p~~~~~~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~ 130 (355)
T 3beh_A 66 ---------------GVVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLI 130 (355)
T ss_dssp ---------------CSSCCCHHHHHHHHHHHHHHHHHHHSCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHH
T ss_pred ---------------CCEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------34103383258799989889999983350367899999999999988999999999999999999
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 31121000000123444464332237566551121001357763699999999887654101225888777535579999
Q 005497 341 GAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTM 420 (693)
Q Consensus 341 ~~~~~~~~~~~~wl~~~~~~~Cl~~~~~~~g~~~~~~~l~~~~~~~~~Yi~SlYwai~tltTVGyGdi~p~t~~E~i~~i 420 (693)
.. ....+...++.+|.++.. ....+.+.+..|..|+||+++|||||||||+.|.+..++++++
T Consensus 131 ------~~-~~~~~~~~~~~a~~~~~~----------e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~ 193 (355)
T 3beh_A 131 ------GV-TTLFGVVLFAVALAAYVI----------ERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAG 193 (355)
T ss_dssp ------HH-HHHHHHHHHHHHHHHHHH----------HTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHH
T ss_pred ------HH-HHHHHHHHHHHHHHHHHH----------HCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHH
T ss_conf ------99-999999999999999875----------3677884322099999999864344589987889821999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCH
Q ss_conf 99999899999999999999999999999999999999999997699988999999999999996179975778740995
Q 005497 421 AIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPE 500 (693)
Q Consensus 421 ~imiiG~~lfa~iig~i~~ii~~~~~~~~~~~~~~~~v~~yM~~~~Lp~~Lr~rV~~Y~~y~w~~~k~~~e~~iL~~Lp~ 500 (693)
++|++|.+++++.+|.+.+.+.+..++ +++.
T Consensus 194 ~~~~~g~~~~~~~~~~i~~~~~~~~~~----------------------------~~~~--------------------- 224 (355)
T 3beh_A 194 AVMMSGIGIFGLWAGILATGFYQEVRR----------------------------GDFV--------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHC---------------------
T ss_conf 999999999999999999998999988----------------------------7650---------------------
Q ss_pred HHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCC
Q ss_conf 689999999998-8643110004999899999977423463799889815880476999993279999338738984799
Q 005497 501 DLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEG 579 (693)
Q Consensus 501 ~Lr~eI~~~~~~-~l~~i~~F~~~s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~~g~~~~l~~G 579 (693)
... .++++++|++++++.++.++..++.+.|.|||.|+++||.++++|||.+|.++++..+ ...+.+|
T Consensus 225 ---------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G 293 (355)
T 3beh_A 225 ---------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPG 293 (355)
T ss_dssp ---------HHHC-------------------------------------------------------------------
T ss_pred ---------CCCHHHHCCCCCCCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEECC--EEEECCC
T ss_conf ---------15212104622112999999999985368897979999928995765999996489999888--0489899
Q ss_pred CEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9671035531012356543442345789743310189985649999961989999999838520594456356
Q 005497 580 DACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI 652 (693)
Q Consensus 580 ~~fGe~~ll~~l~~~~~~~~~~~~~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~ 652 (693)
++|||.+++.+ . ++.++++|.++|+++.+++++|.++++++ |.+...+
T Consensus 294 ~~fGe~~~l~~-----------------~--~~~~~~~A~~~~~l~~i~~~~f~~ll~~~------p~~~~~l 341 (355)
T 3beh_A 294 AFFGEMALISG-----------------E--PRSATVSAATTVSLLSLHSADFQMLCSSS------PEIAEIF 341 (355)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEHHHHCC-----------------C--CCCEEEEECCCEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_conf 99932699579-----------------9--96169999860899998599999999879------8999999
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=1.00 E-value=1 Score=240.38 Aligned_cols=190 Identities=23% Similarity=0.428 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHH
Q ss_conf 999999999999999999999999997699988999999999999996179975778740995689999999998-8643
Q 005497 438 QNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKK 516 (693)
Q Consensus 438 ~~ii~~~~~~~~~~~~~~~~v~~yM~~~~Lp~~Lr~rV~~Y~~y~w~~~k~~~e~~iL~~Lp~~Lr~eI~~~~~~-~l~~ 516 (693)
++|+++++.+..+|++++..+++||+++++|.+||.||++||+|.|..+++.+++++|+.||++||.+|..+++. ++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH-H
T ss_conf 958888778899999999999999998299999999999999999986489899999998589999999999989998-2
Q ss_pred HHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCCCEEEHHHHHHHCCCCCC
Q ss_conf 11000499989999997742346379988981588047699999327999933873898479996710355310123565
Q 005497 517 VRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSV 596 (693)
Q Consensus 517 i~~F~~~s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~~g~~~~l~~G~~fGe~~ll~~l~~~~~ 596 (693)
+|+|..++++++..++..++.+.|.||++|+++|+.++++|||.+|.|+++.++..+..+.+|++|||.+++..
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~------ 153 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKE------ 153 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSS------
T ss_pred CHHHHCCCHHHHHHHHHHHHEEEECCCCEEEECCCCCCEEEEEEECEEEEEECCEEEEEECCCCCCCCHHHCCC------
T ss_conf 58766099999999999722378399999997898566799997069999989958999459997182776058------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 4344234578974331018998564999996198999999983852059445635
Q 005497 597 NRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGA 651 (693)
Q Consensus 597 ~~~~~~~~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~~~~l~~p~~~~~ 651 (693)
...++.++++|.++|+++.|++++|.++++.+ |.+...
T Consensus 154 -----------~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~------p~~~~~ 191 (212)
T 3ukn_A 154 -----------QVIKTNANVKALTYCDLQYISLKGLREVLRLY------PEYAQK 191 (212)
T ss_dssp -----------SCCBBCSEEEESSCEEEEEEEHHHHHHHHHHC------HHHHHH
T ss_pred -----------CCCCCCEEEEECCCEEEEEEEHHHHHHHHHHC------HHHHHH
T ss_conf -----------88885258997524799997699999999989------599999
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=1.00 E-value=1 Score=230.96 Aligned_cols=185 Identities=23% Similarity=0.363 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHC
Q ss_conf 99999999999999999999997699988999999999999996179975778740995689999999998-86431100
Q 005497 442 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIF 520 (693)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~yM~~~~Lp~~Lr~rV~~Y~~y~w~~~k~~~e~~iL~~Lp~~Lr~eI~~~~~~-~l~~i~~F 520 (693)
++++.+..+|+++++.+++||+.++||.+||.||++|++|.|. +++.+|+++|+.||+.||.+|..+.+. ++.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9987789999999999999998759999999999999999985-558789999987699999999999999999659733
Q ss_pred CCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCCCEEEHHHHHHHCCCCCCCCCC
Q ss_conf 04999899999977423463799889815880476999993279999338738984799967103553101235654344
Q 005497 521 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDA 600 (693)
Q Consensus 521 ~~~s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~~g~~~~l~~G~~fGe~~ll~~l~~~~~~~~~ 600 (693)
.+++++++..++..++.+.|.||++|+++|+.++++|||.+|.|+++..+|....+.+|++|||.+++..
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~---------- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR---------- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHHC----------
T ss_pred HCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEECCEEEEEECCCEEEEECCCCEECCHHHHCC----------
T ss_conf 1399999999999578057899988998898477699996369999978974899718998432898469----------
Q ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 2345789743310189985649999961989999999838520594456356
Q 005497 601 KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI 652 (693)
Q Consensus 601 ~~~~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~ 652 (693)
. ++.++++|.++|+++.|++++|.++++.+ |.+...+
T Consensus 151 -------~--~~~~~v~a~~~~~l~~i~~~~f~~ll~~~------p~~~~~~ 187 (202)
T 3bpz_A 151 -------G--RRTASVRADTYCRLYSLSVDNFNEVLEEY------PMMRRAF 187 (202)
T ss_dssp -------S--BCSSEEEESSCEEEEEEEHHHHHHHHHHS------GGGHHHH
T ss_pred -------C--CCCCEEEEEEEEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_conf -------9--84628998558899998899999999989------7999999
No 4
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=1.00 E-value=1 Score=229.80 Aligned_cols=185 Identities=23% Similarity=0.407 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHC
Q ss_conf 99999999999999999999997699988999999999999996179975778740995689999999998-86431100
Q 005497 442 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIF 520 (693)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~yM~~~~Lp~~Lr~rV~~Y~~y~w~~~k~~~e~~iL~~Lp~~Lr~eI~~~~~~-~l~~i~~F 520 (693)
.+++.+..+|+++++.+++||+.+++|.+||.||++||+|.|. +++.+|+++|+.||+.||.+|..+.+. +++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9977789999999999999999759999999999999999971-667899999998399999999999999999648533
Q ss_pred CCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCC-EEEECCCCCEEEHHHHHHHCCCCCCCCC
Q ss_conf 049998999999774234637998898158804769999932799993387-3898479996710355310123565434
Q 005497 521 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCLEHSSVNRD 599 (693)
Q Consensus 521 ~~~s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~~g-~~~~l~~G~~fGe~~ll~~l~~~~~~~~ 599 (693)
..++++++..++..++...|.||++|+++|+.++++|||.+|.|+++..+| .+..+.+|++|||.+++..
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~--------- 150 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTR--------- 150 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHS---------
T ss_pred HCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEEECEEEEEECCCEEEEEECCCCEECHHHHCCC---------
T ss_conf 04999999999996350042999889977986767999983889999659959988469989411887079---------
Q ss_pred CCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 42345789743310189985649999961989999999838520594456356
Q 005497 600 AKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI 652 (693)
Q Consensus 600 ~~~~~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~ 652 (693)
. ++.++++|.++|+++.|++++|.++++++ |.+...+
T Consensus 151 --------~--~~~~~~~a~~~~~l~~i~~~~f~~ll~~~------p~~~~~~ 187 (198)
T 2ptm_A 151 --------E--RRVASVKCETYCTLFSLSVQHFNQVLDEF------PAMRKTM 187 (198)
T ss_dssp --------S--CCSSEEEESSCEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_pred --------C--CCCEEEEEEEEEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_conf --------9--60108999268899997699999999989------5999999
No 5
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=1.00 E-value=1 Score=163.08 Aligned_cols=283 Identities=9% Similarity=0.076 Sum_probs=162.3
Q ss_pred ECCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C---E-------------EEECCCCCHHHHHHHHHHHHH
Q ss_conf 7489-86799989999999999999998887763013567-2---1-------------431477520578999998999
Q 005497 196 MNPH-TRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNN-K---C-------------IVINWPWTKAIVVVRSMTDLI 257 (693)
Q Consensus 196 i~P~-S~f~~~Wd~i~~i~~l~~~~~iPl~i~f~~~~~~~-~---~-------------~~~~~~~~~~~~~i~~i~dii 257 (693)
-+|. |....+|+.++++++++++++..+...- ....+. . + ..........+.+++.++.++
T Consensus 173 e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~i 251 (514)
T 2r9r_B 173 EYPESSGPARIIAIVSVMVILISIVSFCLETLP-IFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIW 251 (514)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 488873788899999999999998976320461-0022211233343333445665434444310210899999999999
Q ss_pred HHHHHHHHCCEEEECCCCCCCCCCEEEECHHHHHHHHHHH-HHHHHHHHHCCHHH---------------------HHHH
Q ss_conf 9999976602307727754347985986598999999856-67999997268356---------------------6689
Q 005497 258 YFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ---------------------RVNQ 315 (693)
Q Consensus 258 F~lDIil~F~t~y~~~~~~~~~~G~iV~d~k~I~~~Ylks-~FiiDlis~iPl~~---------------------Rl~r 315 (693)
|.+|+++++.++-. .++|+++ |+++|+++++|+.+ |++|
T Consensus 252 FtiE~ilR~~~~~~-------------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlR 312 (514)
T 2r9r_B 252 FSFEFLVRFFACPS-------------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFR 312 (514)
T ss_dssp HHHHHHHHHHHSSC-------------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999881886-------------------88888362379999999999999986411343202456788999999
Q ss_pred HHHHHHHHHCH---HHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99987532010---234678631045553112100000012344446433223756655112100135776369999999
Q 005497 316 CLRDACHNSSI---QDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYS 392 (693)
Q Consensus 316 llr~~~~~~~i---~~~~h~l~c~~~~~~~~~~~~~~~~~wl~~~~~~~Cl~~~~~~~g~~~~~~~l~~~~~~~~~Yi~S 392 (693)
++|+++....+ ..+..+....... ...+..... ..+....+.+|.. | +.. ...+.+++..|..|
T Consensus 313 llRvlRilkL~r~~~~l~~l~~tl~~s--~~~l~~ll~-~l~i~~~if~~~~-----~--~~e---~~~~~~~F~s~~~a 379 (514)
T 2r9r_B 313 IMRILRIFKLSRHSKGLQILGQTLKAS--MRELGLLIF-FLFIGVILFSSAV-----Y--FAE---ADERDSQFPSIPDA 379 (514)
T ss_dssp HHGGGGGGGGGGSCHHHHHHHHHHHHT--HHHHHHHHH-HHHHHHHHHHHHH-----H--HHH---TTCTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHH-----H--EEE---CCCCCCCCCCHHHH
T ss_conf 999999999863102789999999999--999999999-9999999987403-----1--021---46787665520121
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 98876541012258887775355799999999989999999999999999999999999999999999999769998899
Q 005497 393 LFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLR 472 (693)
Q Consensus 393 lYwai~tltTVGyGdi~p~t~~E~i~~i~imiiG~~lfa~iig~i~~ii~~~~~~~~~~~~~~~~v~~yM~~~~Lp~~Lr 472 (693)
+||+++|||||||||+.|.+..+++++++++++|.+++++.+|.+.+.++....++.+ ++..+..+.++.-...|....
T Consensus 380 ~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~ 458 (514)
T 2r9r_B 380 FWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPD 458 (514)
T ss_dssp HHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-----------------------
T ss_pred HHEEEEEEEECCCCCCCCCCCCHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCEEEECCCCCCHH
T ss_conf 3012467773124888889843276110599999999999999999999999999999-999973378999688764266
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHC
Q ss_conf 9999999999996179975778740995689999999998-86431100
Q 005497 473 RQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIF 520 (693)
Q Consensus 473 ~rV~~Y~~y~w~~~k~~~e~~iL~~Lp~~Lr~eI~~~~~~-~l~~i~~F 520 (693)
.+ + ...+...++.-..+|.+.++.++...... .....+..
T Consensus 459 l~--~------~~~~~~~~~s~~~el~e~~~~~~~~~~~~~~~~~~~~~ 499 (514)
T 2r9r_B 459 LK--K------SRSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTL 499 (514)
T ss_dssp -------------------------------------------------
T ss_pred HH--H------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77--4------14677744454222122221000013432255677543
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=1.00 E-value=1 Score=157.81 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEE
Q ss_conf 98999999999999999888776301356721431477520578999998999999997660230772775434798598
Q 005497 205 QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELV 284 (693)
Q Consensus 205 ~Wd~i~~i~~l~~~~~iPl~i~f~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDIil~F~t~y~~~~~~~~~~G~iV 284 (693)
.||.+++++++++++...+..... .+......+..+|.+++++|.+|++++|.++..
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~----------~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~------------- 65 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKSGD------------- 65 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH----------HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------
T ss_conf 289999999999999999997221----------376664699999999999999999999802633-------------
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHCCHHH--------------H---HHHHHHHHHHHHCHHHHH-HHHHHCCCCCCCHHHH
Q ss_conf 659899999985667999997268356--------------6---689999875320102346-7863104555311210
Q 005497 285 DHPKKIALNYLRGYFFIDFFVALPLPQ--------------R---VNQCLRDACHNSSIQDCK-KFLDCGHGNGGAEYSQ 346 (693)
Q Consensus 285 ~d~k~I~~~Ylks~FiiDlis~iPl~~--------------R---l~rllr~~~~~~~i~~~~-h~l~c~~~~~~~~~~~ 346 (693)
.++|+|+ +++|+++++|++. | +.|++|..+......... ++...... ..+.
T Consensus 66 ------~~~y~~~-~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~----~~l~ 134 (223)
T 1orq_C 66 ------PAGYVKK-TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADK----IRFY 134 (223)
T ss_dssp ------HHHHHHH-HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----HHHH
T ss_pred ------HHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_conf ------8999997-2989889989999998721221778999999999999999999999999999999999----7899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 00000123444464332237566551121001357763699999999887654101225888777535579999999998
Q 005497 347 DQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVG 426 (693)
Q Consensus 347 ~~~~~~wl~~~~~~~Cl~~~~~~~g~~~~~~~l~~~~~~~~~Yi~SlYwai~tltTVGyGdi~p~t~~E~i~~i~imiiG 426 (693)
.. ........++.+|.++.. +...+++....|..|+||+++|||||||||+.|.+..|++++++.|++|
T Consensus 135 ~~-~~~~~~~~~~~~~~~~~~----------e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G 203 (223)
T 1orq_C 135 HL-FGAVMLTVLYGAFAIYIV----------EYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTG 203 (223)
T ss_dssp HH-HHHHHHHHHHHHHHHHHT----------TSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHH----------HHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99-999999999999999999----------7177678767514177868868735389888889871899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q 005497 427 LLLFAFLIGNMQNFLQAL 444 (693)
Q Consensus 427 ~~lfa~iig~i~~ii~~~ 444 (693)
.+++|+.+|.+++.+++.
T Consensus 204 ~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 204 ISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999876
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=1.00 E-value=1 Score=142.11 Aligned_cols=135 Identities=21% Similarity=0.397 Sum_probs=123.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEC
Q ss_conf 5778740995689999999998-864311000499989999997742346379988981588047699999327999933
Q 005497 491 EDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE 569 (693)
Q Consensus 491 e~~iL~~Lp~~Lr~eI~~~~~~-~l~~i~~F~~~s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~ 569 (693)
.+++++.||+.||.++..+++. +++++++|..++++.++.++..++.+.|.+|+.|+++|+.++++|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEEC
T ss_conf 58999978998999999998799997087653199999999998503666389999993899765799999458999979
Q ss_pred CCEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 8738984799967103553101235654344234578974331018998564999996198999999983852
Q 005497 570 DGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 642 (693)
Q Consensus 570 ~g~~~~l~~G~~fGe~~ll~~l~~~~~~~~~~~~~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~~~~ 642 (693)
+..+..+.+|++||+.+++.. ...++.++++|.++|+++.+++++|.++++++|.+
T Consensus 85 ~~~~~~~~~G~~fG~~~~~~~-----------------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~ 140 (160)
T 4f8a_A 85 DEVVAILGKGDVFGDVFWKEA-----------------TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAF 140 (160)
T ss_dssp TEEEEEEETTCEEECCTTTCS-----------------SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHH
T ss_pred CEEEEEECCCCEECCHHHHCC-----------------CCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 978998359987576777357-----------------66555789998785699998399999999978999
No 8
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=1.00 E-value=1 Score=126.64 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=100.5
Q ss_pred HH-HHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECC---C---EEEECCCCCEEE
Q ss_conf 98-8643110004999899999977423463799889815880476999993279999338---7---389847999671
Q 005497 511 FK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGED---G---IAVCLSEGDACG 583 (693)
Q Consensus 511 ~~-~l~~i~~F~~~s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~~---g---~~~~l~~G~~fG 583 (693)
.. ++.++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ | .+..+.+|++||
T Consensus 155 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fG 234 (299)
T 3shr_A 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFG 234 (299)
T ss_dssp HHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEEC
T ss_pred HHHHHHHCHHHHHCCHHHHHHHHHHCCEEEECCCCEEEECCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEECCCCCEEC
T ss_conf 99998618776509999999999736488989999999089978879999945899999358898626989858988828
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHH
Q ss_conf 03553101235654344234578974331018998564999996198999999983
Q 005497 584 EELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 584 e~~ll~~l~~~~~~~~~~~~~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~ 639 (693)
|.+++.. . ++.++|+|.++|+++.|++++|.+++..+
T Consensus 235 e~~ll~~-----------------~--~~~~tv~a~~~~~l~~i~~~~f~~ll~~~ 271 (299)
T 3shr_A 235 EKALQGE-----------------D--VRTANVIAAEAVTCLVIDRDSFKHLIGGL 271 (299)
T ss_dssp GGGGSSS-----------------E--ECSSEEEESSSEEEEEEEHHHHHHHHTTC
T ss_pred HHHHHCC-----------------C--CCCEEEEECCCEEEEEEEHHHHHHHHCCH
T ss_conf 6898379-----------------9--84218999898799998589999997348
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=1.00 E-value=1 Score=126.56 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEE
Q ss_conf 0995689999999998-864311000499989999997742346379988981588047699999327999933873898
Q 005497 497 NLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVC 575 (693)
Q Consensus 497 ~Lp~~Lr~eI~~~~~~-~l~~i~~F~~~s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~~g~~~~ 575 (693)
.+|..+|.+...+... +++++++|..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++..++..+..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~ 86 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT 86 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHCEEEECCCCCEEEECCCCCCEEEEEEECEEEEEECCEEEEE
T ss_conf 57898899899999999986388663299999999998607784189999995898477799999478999989989999
Q ss_pred CCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHH
Q ss_conf 47999671035531012356543442345789743310189985649999961989999999838
Q 005497 576 LSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 640 (693)
Q Consensus 576 l~~G~~fGe~~ll~~l~~~~~~~~~~~~~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~~ 640 (693)
+.+|++||+.+++.. . ++.++++|.++|+++.|++++|.++++++|
T Consensus 87 ~~~G~~fGe~~~l~~-----------------~--~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 87 MGPGKVFGELAILYN-----------------C--TRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp ECTTCEESCHHHHHC-----------------C--CCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred ECCCCEECCHHHHCC-----------------C--CCCEEEEECCCEEEEEECHHHHHHHHHHCH
T ss_conf 579987042899779-----------------9--854089987646999983999999985595
No 10
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=1.00 E-value=1 Score=118.90 Aligned_cols=111 Identities=13% Similarity=0.181 Sum_probs=98.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCEEE-ECCCCEEECCCCCCCEEEEEEEEEEEEEEC-CCEEEECCCCCEEEHHHH
Q ss_conf 998864311000499989999997742346-379988981588047699999327999933-873898479996710355
Q 005497 510 LFKFVKKVRIFALMDEPILDAICERLRQKT-YISGSKILYRGGLIEKMVFIVRGKMESIGE-DGIAVCLSEGDACGEELL 587 (693)
Q Consensus 510 ~~~~l~~i~~F~~~s~~~l~~L~~~lk~~~-y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~-~g~~~~l~~G~~fGe~~l 587 (693)
....+.+++.|..++...++.|+..+.... +.+|++|+++||.++.+|||.+|.|+++.. ++.++.|++||+|||.++
T Consensus 335 l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGElAL 414 (999)
T 4f7z_A 335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLAL 414 (999)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCEEEECCCCCCEEEEEEEEEEEEEECCCCCEEEECCCCCCCCHHH
T ss_conf 99998731877639999999998753200232699889847985775899982479999768754677259985224344
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-EEEEEEEEHHHHHHHHHHH
Q ss_conf 310123565434423457897433101899856-4999996198999999983
Q 005497 588 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLT-NVEAFSLRAADIEEVTSLF 639 (693)
Q Consensus 588 l~~l~~~~~~~~~~~~~~p~~r~~~~~tv~a~t-~~el~~L~~~df~~ll~~~ 639 (693)
+.+ . +|.+||+|.+ +|++++++++||..++.+-
T Consensus 415 L~~--------------~-----PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 415 VND--------------A-----PRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp TCS--------------C-----BCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred CCC--------------C-----CEEEEEEEECCCEEEEEEEHHHHHHHHHHH
T ss_conf 269--------------9-----704799996275589996679999997378
Done!