BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>005498
MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPK
NLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQS
SVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSD
PVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKK
VNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLED
NNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMW
GDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLK
ELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLD
ILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWT
AEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH
GRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADN
VDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAG

High Scoring Gene Products

Symbol, full name Information P value
DEX1
DEFECTIVE IN EXINE FORMATION 1
protein from Arabidopsis thaliana 2.0e-252

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  005498
        (693 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2095274 - symbol:DEX1 "DEFECTIVE IN EXINE FORM...  1608  2.0e-252  2


>TAIR|locus:2095274 [details] [associations]
            symbol:DEX1 "DEFECTIVE IN EXINE FORMATION 1" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0005509 "calcium ion binding" evidence=ISS]
            [GO:0010208 "pollen wall assembly" evidence=IMP] [GO:0016020
            "membrane" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
            evidence=IDA] Pfam:PF01839 GO:GO:0005783 EMBL:CP002686
            GO:GO:0016020 GO:GO:0005509 InterPro:IPR013517 GO:GO:0010208
            IPI:IPI00534148 RefSeq:NP_566343.1 UniGene:At.16907
            UniGene:At.69661 ProteinModelPortal:F4IYM4 SMR:F4IYM4 PRIDE:F4IYM4
            EnsemblPlants:AT3G09090.1 GeneID:820063 KEGG:ath:AT3G09090
            OMA:ADEYSYD Uniprot:F4IYM4
        Length = 896

 Score = 1608 (571.1 bits), Expect = 2.0e-252, Sum P(2) = 2.0e-252
 Identities = 323/489 (66%), Positives = 360/489 (73%)

Query:   211 KSTPET-NATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLP 269
             K TPE  N+++     +  A AT +    + +N ++   +N  ++ K++    E  IKL 
Sbjct:   246 KPTPELHNSSMDAGANNLAANATTAGSR-ENLNRNVT--TNEVDQSKISGDKNETVIKLN 302

Query:   270 XXXXXXXXXXXXXXXXXXXXXXXXX-RRLLEDNNSKGSQEGN-DKED----VPVATAEND 323
                                       RRLLE++ SK S + + D +D    V +AT END
Sbjct:   303 TSTGNSSETLGTSGNSSTAETVTKSGRRLLEEDGSKESVDSHSDSKDNSEGVRMATVEND 362

Query:   324 QALDENADSSFELFRDTDELAXXXXXXXXXXXXXAMWGDEEWTEEQHEKIEDYVNVDSHI 383
               L+ +ADSSFEL R+ DELA              MWGDEEW E QHE  EDYVN+D+HI
Sbjct:   363 GGLEADADSSFELLRENDELADEYSYDYDDYVDEKMWGDEEWVEGQHENSEDYVNIDAHI 422

Query:   384 LSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTK 443
             L TPVIADID DGV EMI+AVSYFFD EYYDNPEHLKELGGIDI  Y+A +IVVFNLDTK
Sbjct:   423 LCTPVIADIDKDGVQEMIVAVSYFFDPEYYDNPEHLKELGGIDIKNYIASSIVVFNLDTK 482

Query:   444 QVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKF 503
             QVKW  +LDLSTD A+FRAYIYSSPTVVDLDGDG LDILVGTSFGLFY +DH G IREKF
Sbjct:   483 QVKWIKELDLSTDKANFRAYIYSSPTVVDLDGDGYLDILVGTSFGLFYAMDHRGNIREKF 542

Query:   504 PLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIXX 563
             PLEMAEIQGAVVAADINDDGKIELVTTD+HGN+AAWT +G  IWE HLKSLV QGPSI  
Sbjct:   543 PLEMAEIQGAVVAADINDDGKIELVTTDSHGNIAAWTTQGVEIWEAHLKSLVPQGPSIGD 602

Query:   564 XXXXXXXXXXXPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT 623
                        PT SGNIYVLSGKDGS VRPYPYRTHGRVMNQ+LLVDL KRGEK KGLT
Sbjct:   603 VDGDGHTEVVVPTSSGNIYVLSGKDGSIVRPYPYRTHGRVMNQLLLVDLNKRGEKKKGLT 662

Query:   624 IVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683
             IVTTSFDGYLYLIDGPTSC DVVDIGETSYSMVLADNVDGGDDLDLIV+TMNGNVFCFST
Sbjct:   663 IVTTSFDGYLYLIDGPTSCTDVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFST 722

Query:   684 PAPHHPLKA 692
             P+PHHPLKA
Sbjct:   723 PSPHHPLKA 731

 Score = 846 (302.9 bits), Expect = 2.0e-252, Sum P(2) = 2.0e-252
 Identities = 173/267 (64%), Positives = 205/267 (76%)

Query:     1 MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPK 60
             MKS       V L+CL L N + G     +NKFR+R+ATDD+LG P IDEDAL+NTQCPK
Sbjct:     1 MKSRARQCLLVCLLCLSLTNLSYG-----ENKFRERKATDDELGYPDIDEDALLNTQCPK 55

Query:    61 NLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQS 120
              LELRWQTEV+SS+YATPLIADINSDGKLDIVVPSF+HYLEVLEG+DGDKMPGWPAFHQS
Sbjct:    56 KLELRWQTEVTSSVYATPLIADINSDGKLDIVVPSFVHYLEVLEGADGDKMPGWPAFHQS 115

Query:   121 SVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSD 180
             +VHSSPLL+DIDKDGVREIALATYN EVLFFRVSG++M+DKLE+PRRKV K+W+VGL+ D
Sbjct:   116 NVHSSPLLFDIDKDGVREIALATYNAEVLFFRVSGFLMSDKLEVPRRKVHKNWHVGLNPD 175

Query:   181 PVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKK 240
             PVDRSHPDVHDD++  E EA  MKS      ST +TNAT TT         TVS    K+
Sbjct:   176 PVDRSHPDVHDDVL--EEEAMAMKS------STTQTNATTTTPN------VTVSM--TKE 219

Query:   241 VNESLVNVSNPSEERKVNESHTEMNIK 267
             V+ +   VS   ++++   + TE  +K
Sbjct:   220 VHGANSYVSTQEDQKRPENNQTEAIVK 246


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.133   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      693       642   0.00093  120 3  11 23  0.46    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  354 KB (2176 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  61.37u 0.08s 61.45t   Elapsed:  00:00:03
  Total cpu time:  61.37u 0.08s 61.45t   Elapsed:  00:00:03
  Start:  Tue May 21 03:18:23 2013   End:  Tue May 21 03:18:26 2013

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