BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005498
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 76 ATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGD----KMPGWPAFHQSSVHSSPLLYDI 131
PL D SDGKL V + L+ + GD K+ G+ F + +PL D+
Sbjct: 296 GAPLFMDRGSDGKLQEVGQVSVS----LQRASGDFQTTKLNGFEVFARFGSAIAPL-GDL 350
Query: 132 DKDGVREIALAT-YNGE 147
D+DG +IA+A Y GE
Sbjct: 351 DQDGFNDIAIAAPYGGE 367
>pdb|3ODS|A Chain A, Crystal Structure Of The K185a Mutant Of The N-Terminal
Domain Of Human Symplekin
Length = 415
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 127 LLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSH 186
LL D D DG+R A+A G L +S M EIPRR+ + D + R H
Sbjct: 190 LLLDSDNDGIRTHAIAFVEG--LIVTLSPRMADS--EIPRRQEH-----DISLDRIPRDH 240
Query: 187 PDVHDDLIVQESEAA 201
P + +++ +E +AA
Sbjct: 241 PYIQYNVLWEEGKAA 255
>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure
Length = 959
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 76 ATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGD----KMPGWPAFHQSSVHSSPLLYDI 131
PL D SDGKL V + L+ + GD K+ G+ F + +PL D+
Sbjct: 296 GAPLFMDRGSDGKLQEVGQVSVS----LQRASGDFQTTKLNGFEVFARFGSAIAPL-GDL 350
Query: 132 DKDGVREIALAT-YNGE 147
D+DG +IA+A Y GE
Sbjct: 351 DQDGFNDIAIAAPYGGE 367
>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|A Chain A, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 957
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 76 ATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGD----KMPGWPAFHQSSVHSSPLLYDI 131
PL D SDGKL V + L+ + GD K+ G+ F + +PL D+
Sbjct: 296 GAPLFMDRGSDGKLQEVGQVSVS----LQRASGDFQTTKLNGFEVFARFGSAIAPL-GDL 350
Query: 132 DKDGVREIALAT-YNGE 147
D+DG +IA+A Y GE
Sbjct: 351 DQDGFNDIAIAAPYGGE 367
>pdb|3CF4|G Chain G, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 170
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 450 DLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYV 492
D+D NA + + P LDG+GN D+++ F FY+
Sbjct: 79 DVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYI 121
>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 967
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 76 ATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGD----KMPGWPAFHQSSVHSSPLLYDI 131
PL D SDGKL V + L+ + GD K+ G+ F + +PL D+
Sbjct: 296 GAPLFMDRGSDGKLQEVGQVSVS----LQRASGDFQTTKLNGFEVFARFGSAIAPL-GDL 350
Query: 132 DKDGVREIALAT-YNGE 147
D+DG +IA+A Y GE
Sbjct: 351 DQDGFNDIAIAAPYGGE 367
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 43 LGLPQIDE--DALVNTQCPKNLELRWQ---TEVSSSIYATPLIADINSDGKLDIVVPSFL 97
LG P+ A++ TQ + ++ + T++ S A+ D++SDG D+V+
Sbjct: 403 LGAPRYQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAP 462
Query: 98 HYLEVLEGSDGDKMP---GW 114
HY E G P GW
Sbjct: 463 HYYEQTRGGQVSVCPLPRGW 482
>pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|C Chain C, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
Length = 310
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P +T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|2ATC|A Chain A, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 305
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P +T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLNNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1ACM|A Chain A, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|1ACM|C Chain C, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
Length = 310
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P +T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1XJW|A Chain A, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1XJW|C Chain C, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
Length = 310
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTATLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|1AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|2AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|2AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|4AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|4AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|7AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|7AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|8AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|C Chain C, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|1NBE|A Chain A, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
pdb|1NBE|C Chain C, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
Length = 310
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P +T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|C Chain C, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
Length = 310
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|C Chain C, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1GQ3|A Chain A, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|B Chain B, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|C Chain C, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
Length = 310
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
Length = 310
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1RAA|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|3CSU|A Chain A, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|B Chain B, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|C Chain C, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|1Q95|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|A Chain A, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|G Chain G, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1ZA1|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA1|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA2|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|1ZA2|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|2AIR|A Chain A, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2AIR|G Chain G, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2FZC|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2H3E|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2IPO|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2QG9|A Chain A, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|C Chain C, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QGF|A Chain A, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|2QGF|C Chain C, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|3D7S|A Chain A, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|C Chain C, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|4F04|A Chain A, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|C Chain C, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|A Chain A, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|C Chain C, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 310
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|B Chain B, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|C Chain C, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
Length = 311
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 119 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 178
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 179 KFDGNRFYFIAPDALA 194
>pdb|2A0F|A Chain A, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|C Chain C, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2HSE|A Chain A, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|2HSE|C Chain C, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
Length = 310
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|1TTH|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
Length = 310
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|9ATC|A Chain A, Atcase Y165f Mutant
Length = 310
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 577 LSGNIYVLSGKDGSKVRPYP--------YRTHGRVMN-QVLLVDLTKRGEKSKGLTIVTT 627
SGN+ VL+ DGS P T GR+ N V +V K G LT
Sbjct: 118 FSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKFGRTVHSLTQALA 177
Query: 628 SFDGYLYLIDGPTSCA 643
FDG + P + A
Sbjct: 178 KFDGNRFYFIAPDALA 193
>pdb|3ODR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 415
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 127 LLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSH 186
LL D D DG+R A+ G L +S M EIPRR+ + D + R H
Sbjct: 190 LLLDSDNDGIRTHAIKFVEG--LIVTLSPRMADS--EIPRRQEH-----DISLDRIPRDH 240
Query: 187 PDVHDDLIVQESEAA 201
P + +++ +E +AA
Sbjct: 241 PYIQYNVLWEEGKAA 255
>pdb|3O2T|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 386
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 127 LLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSH 186
LL D D DG+R A+ G L +S M EIPRR+ + D + R H
Sbjct: 161 LLLDSDNDGIRTHAIKFVEG--LIVTLSPRMADS--EIPRRQEH-----DISLDRIPRDH 211
Query: 187 PDVHDDLIVQESEAA 201
P + +++ +E +AA
Sbjct: 212 PYIQYNVLWEEGKAA 226
>pdb|3O2Q|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2Q|D Chain D, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2S|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72 Complex
pdb|4H3H|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3H|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3K|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
pdb|4H3K|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
Length = 351
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 127 LLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSH 186
LL D D DG+R A+ G L +S M EIPRR+ + D + R H
Sbjct: 161 LLLDSDNDGIRTHAIKFVEG--LIVTLSPRMADS--EIPRRQEH-----DISLDRIPRDH 211
Query: 187 PDVHDDLIVQESEAA 201
P + +++ +E +AA
Sbjct: 212 PYIQYNVLWEEGKAA 226
>pdb|2VXH|A Chain A, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|B Chain B, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|C Chain C, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|D Chain D, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|E Chain E, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|F Chain F, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
Length = 251
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 209 TKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHT 262
+K +P NA ++++T S PAP V VKK N N+S P E K E HT
Sbjct: 123 SKDKSPGLNAGLSSATYSGPAPRYVIVIPVKK-NAEWWNMS-PEERLKEMEVHT 174
>pdb|1V7V|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase
pdb|1V7W|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase In Complex With Glcnac
pdb|1V7X|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase In Complex With Glcnac And Sulfate
Length = 807
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 624 IVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGD 665
I T D +L+LI PT C V++ GETS+ + DGG+
Sbjct: 420 IKDTCSDDHLWLI--PTICKYVMETGETSFFDQMIPYADGGE 459
>pdb|2Z8R|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw At 1.40
A Resolution
pdb|2Z8R|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw At 1.40
A Resolution
pdb|2Z8S|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Digalacturonic Acid
pdb|2Z8S|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Digalacturonic Acid
pdb|2ZUX|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Rhamnose
pdb|2ZUX|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Rhamnose
Length = 591
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 428 GKYVAGAIVVFNL-DTKQVK-WTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGT 485
G Y +V +N D K K WT D S N +F + ++ D+DGDG +I+ G+
Sbjct: 287 GYYAKTMLVAYNFRDGKLSKLWTLDSSKS-GNEAFAGQGNHNLSIADVDGDGKDEIIFGS 345
Query: 486 SFGLFYVLDHHGK 498
+DH GK
Sbjct: 346 -----MAVDHDGK 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,508,603
Number of Sequences: 62578
Number of extensions: 856355
Number of successful extensions: 1648
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 48
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)