Query 005498
Match_columns 693
No_of_seqs 342 out of 2121
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 00:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11138 outer membrane biogen 99.5 1.4E-10 3.1E-15 128.0 38.0 210 433-683 170-393 (394)
2 TIGR03300 assembly_YfgL outer 99.3 1.3E-08 2.9E-13 111.4 38.4 209 433-682 155-377 (377)
3 cd00216 PQQ_DH Dehydrogenases 98.9 4.3E-07 9.3E-12 103.6 28.0 226 432-676 174-458 (488)
4 KOG3637 Vitronectin receptor, 98.9 1E-08 2.2E-13 124.7 12.5 177 386-587 270-481 (1030)
5 KOG3637 Vitronectin receptor, 98.8 3.9E-08 8.5E-13 119.8 15.6 174 462-639 265-481 (1030)
6 PRK11138 outer membrane biogen 98.8 6.3E-07 1.4E-11 99.2 23.1 205 432-683 129-352 (394)
7 TIGR03300 assembly_YfgL outer 98.8 2.3E-06 5.1E-11 93.7 27.2 206 432-684 114-338 (377)
8 cd00216 PQQ_DH Dehydrogenases 98.6 7.2E-06 1.6E-10 93.6 24.2 234 432-684 119-424 (488)
9 PF13360 PQQ_2: PQQ-like domai 98.4 8E-05 1.7E-09 75.4 23.8 224 432-685 2-231 (238)
10 PF14783 BBS2_Mid: Ciliary BBS 98.4 1.6E-06 3.6E-11 78.9 8.6 97 385-492 3-110 (111)
11 KOG4550 Predicted membrane pro 98.3 2.5E-05 5.4E-10 84.6 17.5 205 465-673 88-342 (606)
12 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.00011 2.3E-09 84.9 22.5 197 433-643 79-337 (527)
13 PF13517 VCBS: Repeat domain i 98.2 2.4E-06 5.2E-11 69.3 6.0 56 518-574 1-61 (61)
14 PF13517 VCBS: Repeat domain i 98.1 3.8E-06 8.2E-11 68.1 4.8 57 472-529 1-61 (61)
15 PF13360 PQQ_2: PQQ-like domai 98.1 0.00041 8.9E-09 70.2 20.0 178 432-642 45-233 (238)
16 COG1520 FOG: WD40-like repeat 97.9 0.0029 6.3E-08 69.6 23.4 179 432-643 77-272 (370)
17 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.00027 5.9E-09 64.6 11.7 106 466-581 3-108 (111)
18 KOG4550 Predicted membrane pro 97.8 0.00034 7.3E-09 76.1 13.7 198 468-672 38-271 (606)
19 TIGR03074 PQQ_membr_DH membran 97.7 0.0018 3.8E-08 77.7 19.8 197 433-643 204-481 (764)
20 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0033 7.2E-08 65.2 17.3 136 432-592 32-170 (354)
21 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.01 2.2E-07 68.7 23.0 59 489-547 272-339 (527)
22 COG1520 FOG: WD40-like repeat 97.5 0.014 3.1E-07 64.1 22.0 177 435-642 35-220 (370)
23 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.0053 1.2E-07 63.7 14.1 147 522-689 21-171 (354)
24 TIGR03074 PQQ_membr_DH membran 96.8 0.038 8.3E-07 66.5 17.1 160 432-597 269-487 (764)
25 KOG0296 Angio-associated migra 96.4 0.35 7.6E-06 52.5 19.7 221 430-685 125-357 (399)
26 cd00200 WD40 WD40 domain, foun 96.0 1.9 4.1E-05 42.5 26.0 214 432-682 72-289 (289)
27 PF01839 FG-GAP: FG-GAP repeat 95.9 0.006 1.3E-07 44.1 2.6 28 557-584 3-34 (34)
28 PF01839 FG-GAP: FG-GAP repeat 95.9 0.0072 1.6E-07 43.7 2.7 28 466-493 3-34 (34)
29 KOG0266 WD40 repeat-containing 95.6 2.5 5.4E-05 48.1 23.2 202 467-686 161-366 (456)
30 KOG0296 Angio-associated migra 95.4 2.5 5.5E-05 46.1 20.6 139 433-592 86-225 (399)
31 KOG2106 Uncharacterized conser 95.4 4.7 0.0001 45.8 23.3 195 468-684 249-477 (626)
32 KOG0291 WD40-repeat-containing 94.9 6.4 0.00014 46.7 23.5 195 466-685 351-551 (893)
33 cd00200 WD40 WD40 domain, foun 94.1 6.5 0.00014 38.6 25.8 213 433-684 31-249 (289)
34 KOG0266 WD40 repeat-containing 93.8 12 0.00026 42.6 23.0 161 468-642 249-412 (456)
35 PTZ00420 coronin; Provisional 93.8 18 0.00039 42.6 30.3 206 468-685 77-294 (568)
36 PF14779 BBS1: Ciliary BBSome 93.6 3.8 8.3E-05 43.2 16.7 59 622-682 196-256 (257)
37 KOG0316 Conserved WD40 repeat- 93.4 11 0.00025 39.2 20.0 178 484-684 77-257 (307)
38 PTZ00421 coronin; Provisional 93.2 20 0.00043 41.5 24.0 201 468-685 78-291 (493)
39 KOG0273 Beta-transducin family 92.5 22 0.00048 40.2 21.2 190 470-683 321-522 (524)
40 PLN00181 protein SPA1-RELATED; 92.1 36 0.00077 41.6 25.4 198 468-685 486-691 (793)
41 KOG0282 mRNA splicing factor [ 91.7 7.9 0.00017 43.7 16.8 217 431-681 278-502 (503)
42 KOG0273 Beta-transducin family 91.4 14 0.00031 41.7 18.3 151 466-639 236-389 (524)
43 PLN00181 protein SPA1-RELATED; 90.6 49 0.0011 40.4 28.1 223 432-683 554-792 (793)
44 PF05567 Neisseria_PilC: Neiss 90.4 2.6 5.6E-05 46.2 11.7 93 383-498 147-241 (335)
45 COG4993 Gcd Glucose dehydrogen 90.4 7.3 0.00016 45.5 15.3 63 579-643 426-492 (773)
46 KOG2055 WD40 repeat protein [G 89.7 14 0.00031 41.6 16.4 189 479-685 226-418 (514)
47 KOG0301 Phospholipase A2-activ 89.2 23 0.0005 41.8 18.2 183 467-684 103-288 (745)
48 KOG0646 WD40 repeat protein [G 89.1 25 0.00054 39.7 17.8 192 474-685 90-308 (476)
49 KOG2048 WD40 repeat protein [G 88.8 37 0.00081 40.1 19.4 180 481-683 40-232 (691)
50 KOG0316 Conserved WD40 repeat- 88.6 35 0.00075 35.8 19.0 213 433-682 81-297 (307)
51 KOG0282 mRNA splicing factor [ 88.1 6.8 0.00015 44.3 12.6 185 483-688 232-419 (503)
52 KOG2106 Uncharacterized conser 87.9 36 0.00078 39.0 18.1 136 526-681 382-518 (626)
53 TIGR03866 PQQ_ABC_repeats PQQ- 87.8 34 0.00074 34.8 25.8 220 433-685 53-280 (300)
54 KOG0318 WD40 repeat stress pro 87.2 64 0.0014 37.3 25.4 201 470-687 152-353 (603)
55 KOG2048 WD40 repeat protein [G 85.6 75 0.0016 37.7 19.6 193 474-685 67-276 (691)
56 KOG2055 WD40 repeat protein [G 85.6 14 0.00029 41.8 13.2 148 523-686 224-376 (514)
57 KOG4378 Nuclear protein COP1 [ 85.0 24 0.00053 40.3 14.8 166 511-691 121-287 (673)
58 KOG1539 WD repeat protein [Gen 84.1 23 0.0005 42.7 14.8 104 480-593 174-281 (910)
59 TIGR03866 PQQ_ABC_repeats PQQ- 80.9 68 0.0015 32.6 26.0 177 432-642 10-190 (300)
60 KOG2321 WD40 repeat protein [G 79.6 60 0.0013 37.9 15.6 107 479-591 146-262 (703)
61 PTZ00420 coronin; Provisional 77.3 1.6E+02 0.0035 34.8 21.3 165 513-690 76-254 (568)
62 PF13570 PQQ_3: PQQ-like domai 76.2 3.8 8.3E-05 30.1 3.6 37 63-105 2-38 (40)
63 KOG2321 WD40 repeat protein [G 76.0 13 0.00029 43.0 9.2 106 569-685 145-259 (703)
64 KOG0271 Notchless-like WD40 re 75.8 1.4E+02 0.003 33.4 18.2 180 485-685 224-440 (480)
65 KOG0315 G-protein beta subunit 73.6 1.3E+02 0.0028 32.0 16.4 177 487-685 19-198 (311)
66 PF13570 PQQ_3: PQQ-like domai 73.5 6.9 0.00015 28.7 4.4 39 543-587 1-39 (40)
67 KOG0268 Sof1-like rRNA process 73.1 40 0.00086 37.3 11.5 101 570-685 200-303 (433)
68 KOG0293 WD40 repeat-containing 72.8 1.4E+02 0.0031 33.6 15.7 200 467-687 314-516 (519)
69 PF01011 PQQ: PQQ enzyme repea 72.7 5.9 0.00013 28.9 3.8 28 572-599 3-30 (38)
70 KOG0278 Serine/threonine kinas 72.6 1.3E+02 0.0028 32.0 14.5 140 527-686 158-299 (334)
71 KOG0288 WD40 repeat protein Ti 72.5 75 0.0016 35.7 13.6 192 466-685 220-418 (459)
72 smart00191 Int_alpha Integrin 72.4 2.3 5E-05 34.1 1.7 22 385-406 7-29 (58)
73 KOG0283 WD40 repeat-containing 72.3 61 0.0013 39.0 13.8 146 527-685 425-577 (712)
74 KOG1517 Guanine nucleotide bin 71.4 1.4E+02 0.0031 37.5 16.5 186 488-686 1086-1289(1387)
75 KOG0772 Uncharacterized conser 71.2 49 0.0011 38.1 12.1 124 559-691 271-401 (641)
76 smart00191 Int_alpha Integrin 71.0 4.7 0.0001 32.3 3.2 30 466-495 7-44 (58)
77 KOG0275 Conserved WD40 repeat- 70.0 1E+02 0.0022 33.7 13.5 228 432-684 234-467 (508)
78 KOG1539 WD repeat protein [Gen 69.9 1.9E+02 0.0042 35.3 17.0 100 571-685 174-276 (910)
79 PF01011 PQQ: PQQ enzyme repea 69.3 13 0.00027 27.2 4.9 30 527-556 3-33 (38)
80 KOG1274 WD40 repeat protein [G 68.6 1.1E+02 0.0024 37.5 14.9 149 518-685 20-169 (933)
81 PF05567 Neisseria_PilC: Neiss 67.6 23 0.00049 38.9 8.6 81 462-543 145-240 (335)
82 KOG0310 Conserved WD40 repeat- 65.8 2.5E+02 0.0054 32.2 17.8 197 467-683 70-267 (487)
83 KOG1036 Mitotic spindle checkp 65.8 80 0.0017 34.2 11.7 137 525-685 26-164 (323)
84 KOG0647 mRNA export protein (c 62.9 1.6E+02 0.0036 31.9 13.3 145 527-688 43-188 (347)
85 PTZ00421 coronin; Provisional 62.8 2.9E+02 0.0064 32.0 22.3 120 512-642 76-201 (493)
86 KOG0772 Uncharacterized conser 62.2 98 0.0021 35.8 12.2 105 481-586 229-346 (641)
87 smart00564 PQQ beta-propeller 61.0 12 0.00026 25.7 3.4 24 572-595 9-32 (33)
88 PF14727 PHTB1_N: PTHB1 N-term 60.6 91 0.002 35.4 11.9 122 502-636 232-357 (418)
89 KOG0301 Phospholipase A2-activ 57.6 1E+02 0.0022 36.8 11.6 134 480-638 153-287 (745)
90 PF14779 BBS1: Ciliary BBSome 57.6 55 0.0012 34.7 8.9 80 603-688 16-101 (257)
91 KOG0283 WD40 repeat-containing 56.7 2.5E+02 0.0054 34.0 14.9 142 480-638 424-575 (712)
92 PF14781 BBS2_N: Ciliary BBSom 55.3 2E+02 0.0043 27.6 11.3 119 469-591 2-128 (136)
93 KOG1188 WD40 repeat protein [G 54.3 3.4E+02 0.0074 30.0 15.4 183 481-685 43-243 (376)
94 KOG0643 Translation initiation 53.3 3.2E+02 0.0069 29.4 17.5 155 513-686 12-179 (327)
95 KOG0275 Conserved WD40 repeat- 52.9 1.6E+02 0.0035 32.1 11.4 197 468-684 216-423 (508)
96 KOG0281 Beta-TrCP (transducin 52.8 1.2E+02 0.0025 33.6 10.4 194 467-691 239-435 (499)
97 KOG0318 WD40 repeat stress pro 52.1 4.5E+02 0.0097 30.7 22.7 193 468-686 323-519 (603)
98 COG4993 Gcd Glucose dehydrogen 51.1 34 0.00073 40.3 6.4 67 432-501 425-494 (773)
99 KOG1274 WD40 repeat protein [G 50.7 5.8E+02 0.013 31.7 23.2 187 480-685 68-263 (933)
100 TIGR02658 TTQ_MADH_Hv methylam 50.5 4E+02 0.0086 29.6 26.3 51 631-685 279-331 (352)
101 KOG0315 G-protein beta subunit 50.4 3.4E+02 0.0074 28.9 22.2 148 524-684 136-288 (311)
102 PF12894 Apc4_WD40: Anaphase-p 50.3 16 0.00034 28.4 2.7 20 139-158 26-45 (47)
103 KOG1273 WD40 repeat protein [G 49.7 3.9E+02 0.0085 29.4 18.4 48 633-683 274-321 (405)
104 smart00564 PQQ beta-propeller 47.4 28 0.00062 23.8 3.4 23 481-503 9-32 (33)
105 COG2706 3-carboxymuconate cycl 45.6 4.6E+02 0.01 29.0 24.2 80 467-546 90-180 (346)
106 KOG0639 Transducin-like enhanc 44.1 2.6E+02 0.0057 32.4 11.8 154 514-686 468-624 (705)
107 KOG0308 Conserved WD40 repeat- 42.2 3.8E+02 0.0082 32.1 13.0 147 526-685 87-244 (735)
108 KOG1517 Guanine nucleotide bin 42.2 8.6E+02 0.019 31.2 17.4 157 473-640 1118-1288(1387)
109 KOG1034 Transcriptional repres 41.8 5.2E+02 0.011 28.6 13.6 107 568-685 104-212 (385)
110 PF12256 TcdB_toxin_midN: Inse 41.2 16 0.00035 36.0 1.9 19 385-403 25-43 (175)
111 PF08450 SGL: SMP-30/Gluconola 39.9 4.2E+02 0.009 26.9 15.5 128 433-578 115-246 (246)
112 KOG1446 Histone H3 (Lys4) meth 39.5 5.4E+02 0.012 28.1 22.3 75 608-688 191-266 (311)
113 KOG3881 Uncharacterized conser 37.3 6.5E+02 0.014 28.4 15.2 112 567-686 158-279 (412)
114 KOG1446 Histone H3 (Lys4) meth 36.4 6E+02 0.013 27.7 19.5 122 470-596 145-271 (311)
115 PF02950 Conotoxin: Conotoxin; 35.6 12 0.00027 31.4 0.0 27 9-35 4-31 (75)
116 COG4946 Uncharacterized protei 32.6 8.5E+02 0.018 28.3 17.4 49 488-543 248-296 (668)
117 PF08553 VID27: VID27 cytoplas 32.3 5.7E+02 0.012 31.6 13.1 145 477-637 491-645 (794)
118 KOG0639 Transducin-like enhanc 31.1 5.6E+02 0.012 29.9 11.8 103 470-586 514-621 (705)
119 KOG0308 Conserved WD40 repeat- 30.7 1E+03 0.022 28.7 14.3 141 529-685 135-286 (735)
120 PF12256 TcdB_toxin_midN: Inse 30.4 85 0.0018 30.9 5.0 20 512-531 25-44 (175)
121 PF14782 BBS2_C: Ciliary BBSom 30.1 58 0.0013 37.1 4.2 32 508-539 11-42 (431)
122 PRK11028 6-phosphogluconolacto 28.4 7.3E+02 0.016 26.2 23.7 115 468-588 37-157 (330)
123 COG3419 PilY1 Tfp pilus assemb 28.0 9.2E+02 0.02 30.6 13.8 167 430-598 589-800 (1036)
124 PF10282 Lactonase: Lactonase, 26.5 8.5E+02 0.018 26.3 27.7 210 466-684 87-322 (345)
125 KOG1188 WD40 repeat protein [G 26.5 9.3E+02 0.02 26.8 12.5 83 527-613 43-126 (376)
126 PF14782 BBS2_C: Ciliary BBSom 26.1 92 0.002 35.5 4.9 30 464-493 13-42 (431)
127 KOG0271 Notchless-like WD40 re 26.0 1E+03 0.022 27.0 15.9 109 514-641 160-278 (480)
128 KOG0277 Peroxisomal targeting 23.7 9.3E+02 0.02 25.9 15.0 119 559-690 107-227 (311)
129 KOG1036 Mitotic spindle checkp 23.7 9.9E+02 0.021 26.2 17.6 137 479-639 26-163 (323)
130 cd00028 B_lectin Bulb-type man 23.5 5.5E+02 0.012 23.1 9.6 51 485-549 62-112 (116)
131 KOG0319 WD40-repeat-containing 23.4 1.4E+03 0.031 27.9 15.1 202 473-693 27-230 (775)
132 KOG0307 Vesicle coat complex C 22.8 6.6E+02 0.014 31.9 11.3 205 474-685 75-285 (1049)
133 KOG0291 WD40-repeat-containing 22.3 1.5E+03 0.033 27.8 19.4 152 511-683 350-507 (893)
134 COG2706 3-carboxymuconate cycl 22.1 1.1E+03 0.024 26.2 24.6 73 468-543 147-222 (346)
135 KOG0302 Ribosome Assembly prot 21.8 8.4E+02 0.018 27.5 10.8 142 532-685 232-379 (440)
136 KOG1332 Vesicle coat complex C 20.7 1E+03 0.023 25.4 12.7 150 427-587 74-241 (299)
137 PRK11028 6-phosphogluconolacto 20.6 1E+03 0.022 25.1 29.2 205 467-684 81-304 (330)
138 KOG0276 Vesicle coat complex C 20.5 1.5E+03 0.033 27.2 15.3 145 527-688 28-175 (794)
No 1
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.50 E-value=1.4e-10 Score=128.01 Aligned_cols=210 Identities=19% Similarity=0.314 Sum_probs=141.4
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeccccc---
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMA--- 508 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g--- 508 (693)
+.+++||..+|+++|........ .......+|++.+ | -+++++.+|.+++++ .+|+..|.++....
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~----~~~~~~~sP~v~~----~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPS----LTLRGESAPATAF----G--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCc----ccccCCCCCEEEC----C--EEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 57999999999999998764211 1111235676653 2 377788889999888 68999987654321
Q ss_pred -------ccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCc
Q 005498 509 -------EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580 (693)
Q Consensus 509 -------~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~ 580 (693)
.+...+++. +| -|+++..+|.+++++. +|+..|+...... ..+.+.+ .-|++.+.+|.
T Consensus 240 ~~~~~~~~~~~sP~v~----~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~~~~------~~vy~~~~~g~ 305 (394)
T PRK11138 240 TEIDRLVDVDTTPVVV----GG--VVYALAYNGNLVALDLRSGQIVWKREYGSV--NDFAVDG------GRIYLVDQNDR 305 (394)
T ss_pred cchhcccccCCCcEEE----CC--EEEEEEcCCeEEEEECCCCCEEEeecCCCc--cCcEEEC------CEEEEEcCCCe
Confidence 122344443 22 4777778899999987 8999998775432 2233321 24788888999
Q ss_pred EEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecC-CcceeeEEE
Q 005498 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIG-ETSYSMVLA 658 (693)
Q Consensus 581 v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g-~~~~s~v~~ 658 (693)
+++++..+|+.+|..+........+|++..+ -|++++.+|++++++..+|... ...+. ....+.|++
T Consensus 306 l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g-----------~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~ 374 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLLHRLLTAPVLYNG-----------YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV 374 (394)
T ss_pred EEEEECCCCcEEEcccccCCCcccCCEEECC-----------EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE
Confidence 9999999999998765433333445544321 2888899999999998877543 44443 234555554
Q ss_pred EeecCCCCccEEEEeeCCcEEEEEC
Q 005498 659 DNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 659 ~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
. +| -|++++.+|.||+|+.
T Consensus 375 ~----~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 A----DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred E----CC--EEEEEeCCceEEEEeC
Confidence 3 33 3999999999999975
No 2
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.33 E-value=1.3e-08 Score=111.36 Aligned_cols=209 Identities=22% Similarity=0.373 Sum_probs=137.6
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccc--
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE-- 509 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~-- 509 (693)
+.++++|..+|+++|........ ......++|.+.+ | -++++..+|.++.++ .+|+.+|........
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~----~~~~~~~sp~~~~----~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPA----LTLRGSASPVIAD----G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCc----eeecCCCCCEEEC----C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 56899999999999998653211 1111234566553 2 466777778999999 589998876543210
Q ss_pred --------cccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCc
Q 005498 510 --------IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580 (693)
Q Consensus 510 --------~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~ 580 (693)
....+.+. ++ -+++.+.+|.+++++. +|+..|...... ...+.+.+ .-|++++.+|.
T Consensus 225 ~~~~~~~~~~~~p~~~----~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~~~~------~~vyv~~~~G~ 290 (377)
T TIGR03300 225 TELERLVDVDGDPVVD----GG--QVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPAVDD------NRLYVTDADGV 290 (377)
T ss_pred CchhhhhccCCccEEE----CC--EEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCceEeC------CEEEEECCCCe
Confidence 12233332 22 4777778899999987 899999876432 23344421 13777888899
Q ss_pred EEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCc-ceeeEEE
Q 005498 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGET-SYSMVLA 658 (693)
Q Consensus 581 v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~-~~s~v~~ 658 (693)
+++++..+|+.+|..+........+|+...+ -|++++.+|.+|+++..++... .+.++.. ..+.+++
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~-----------~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~ 359 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAVVGG-----------YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV 359 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEEECC-----------EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE
Confidence 9999999999998764322223344443222 3888899999999998766543 5555553 4555555
Q ss_pred EeecCCCCccEEEEeeCCcEEEEE
Q 005498 659 DNVDGGDDLDLIVTTMNGNVFCFS 682 (693)
Q Consensus 659 ~DlDGDG~lDLvv~s~~G~v~~~~ 682 (693)
.| + .|++++.+|.||||+
T Consensus 360 ~~----~--~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 360 VG----D--GLLVQTRDGDLYAFR 377 (377)
T ss_pred EC----C--EEEEEeCCceEEEeC
Confidence 42 3 399999999999984
No 3
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.93 E-value=4.3e-07 Score=103.59 Aligned_cols=226 Identities=17% Similarity=0.134 Sum_probs=130.3
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccc-------------cccccCcEEEecCCCCCccEEEEeeCC----------
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFR-------------AYIYSSPTVVDLDGDGNLDILVGTSFG---------- 488 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~-------------~~~~ssp~v~DlDGDG~~DIvvg~~~G---------- 488 (693)
.+.+++||..+|+.+|..+...... ...+ ..++++| +.|..+ -=|++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~g~~vw~~p-a~d~~~---g~V~vg~~~g~~~~~~~~~~ 248 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDP-NAFPTWGPDRQMWGPGGGTSWASP-TYDPKT---NLVYVGTGNGSPWNWGGRRT 248 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCc-CCCCCCCCCcceecCCCCCccCCe-eEeCCC---CEEEEECCCCCCCccCCccC
Confidence 4789999999999999987632110 0000 1112233 333111 1255555443
Q ss_pred --------eEEEEe-CCCceeeeeccccc-----ccccceEEEe---ecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEe
Q 005498 489 --------LFYVLD-HHGKIREKFPLEMA-----EIQGAVVAAD---INDDGKIELVTTDTHGNVAAWTA-EGKGIWEQH 550 (693)
Q Consensus 489 --------~Lyv~~-~~G~~~~~~~~~~g-----~~~ss~~v~D---lDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~ 550 (693)
.|++++ .+|+.+|.+..... ...+.+.+.+ +++....-++++..+|.+++++. +|+.+|+..
T Consensus 249 ~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 249 PGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 699999 68999998754321 2334455555 44554445677778899999988 899999876
Q ss_pred eccc-cccCc--EEEec---CC---CCCccEEEEccCCcEEEEECCCCceeecceeccC-------C-ccccceEEEecc
Q 005498 551 LKSL-VTQGP--SIGDV---DG---DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH-------G-RVMNQVLLVDLT 613 (693)
Q Consensus 551 ~~s~-~~~~~--~vgDl---DG---DG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~-------g-~~~s~v~l~DlD 613 (693)
.... ....+ .+... .. ++...++....+|.+++++..+|+.+|..+.... . ....++++.+
T Consensus 329 ~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g-- 406 (488)
T cd00216 329 EVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG-- 406 (488)
T ss_pred eeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC--
Confidence 5311 10000 00000 00 0000011122468899999999999988776511 1 1122332211
Q ss_pred CCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCccEEEEeeCC
Q 005498 614 KRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNG 676 (693)
Q Consensus 614 GDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G 676 (693)
--|++++.+|.+|+++..+|... ...++....+.|++ +..+|+ ++|+...|
T Consensus 407 --------~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~--~~~~g~--~yv~~~~g 458 (488)
T cd00216 407 --------NLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMT--YEVNGK--QYVGVMVG 458 (488)
T ss_pred --------CeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEE--EEeCCE--EEEEEEec
Confidence 12788889999999998888654 66777666666643 222454 66666555
No 4
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=98.87 E-value=1e-08 Score=124.73 Aligned_cols=177 Identities=23% Similarity=0.343 Sum_probs=116.7
Q ss_pred CcEEEeecCCCCCcEEEEeeccCcceeecCCCCCccccceeccccccceEEEEECCCCceEEEeeccCCcCccccccccc
Q 005498 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIY 465 (693)
Q Consensus 386 spaiaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~idi~~~~~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ 465 (693)
+.+++++++++..++|.++..+. ...|.+++|+..+. .|.....+. .+.+..|+.
T Consensus 270 sV~~g~f~~~~~~~~VaGAPr~~---------------------~~~G~v~if~~~~~--~~~~~~~~~--GeQ~GSYFG 324 (1030)
T KOG3637|consen 270 SVAVGVFSGPGTISFVAGAPRYN---------------------HTGGKVYIFQLSGK--SLRPLQVLR--GEQIGSYFG 324 (1030)
T ss_pred EEEeeeccCCCceEEEecCcccc---------------------CcccEEEEEecccc--ccceeeeee--eeeehhhcC
Confidence 66789999988899988764221 11256777877655 333322211 234567888
Q ss_pred cCcEEEecCCCCCccEEEEee---------CCeEEEEeCCCceeeeecc--cc-----cccc-cceEEEeecCCCCeEEE
Q 005498 466 SSPTVVDLDGDGNLDILVGTS---------FGLFYVLDHHGKIREKFPL--EM-----AEIQ-GAVVAADINDDGKIELV 528 (693)
Q Consensus 466 ssp~v~DlDGDG~~DIvvg~~---------~G~Lyv~~~~G~~~~~~~~--~~-----g~~~-ss~~v~DlDgDG~~DLv 528 (693)
.+++++|+|+||..||+|+.. .|+||+|.+.+...+.... .. +... +-..++|+|+||..||+
T Consensus 325 ~sl~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~~~~~~~RFG~Ala~LGDlN~DG~nDVA 404 (1030)
T KOG3637|consen 325 YSLAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQITLRGPGGPSGRFGSALAALGDLNQDGYNDVA 404 (1030)
T ss_pred eeEEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCCCCcccceeEecCCCcccchhhhhhcccCcccCCCCceE
Confidence 899999999999999999863 5689999877644332211 11 1222 23467799999999999
Q ss_pred EEcC---C--CcEEEEecCCCee---eEEeeccc--------cccCcEE-EecCCCCCccEEEEcc-CCcEEEEECC
Q 005498 529 TTDT---H--GNVAAWTAEGKGI---WEQHLKSL--------VTQGPSI-GDVDGDGHSDVVVPTL-SGNIYVLSGK 587 (693)
Q Consensus 529 v~~~---~--G~v~~~~~~G~~~---W~~~~~s~--------~~~~~~v-gDlDGDG~~DIvv~s~-~G~v~~l~~~ 587 (693)
|+.. + |.|++|.+.-.++ -.+.+.+. ...++.= .|+||||.+||+|++. .+.++.|+..
T Consensus 405 VGAP~eg~~~GaVYIy~Gs~~Gl~~~PSQ~I~g~~~~~~l~~FG~SLsG~~DlDgNgypDlaVGA~~s~~vvllrsR 481 (1030)
T KOG3637|consen 405 VGAPFEGDNQGAVYIYHGSKGGLRSKPSQRIEGSSLGPGLQYFGQSLSGGSDLDGNGYPDLAVGAFGSGQVVLLRAR 481 (1030)
T ss_pred EeCCcCCCCCceEEEEcCCCCCCCCCCceEEeccccCCcccccccccccCccCCCCCCccEEeccCCCCcEEEEEcc
Confidence 9974 3 7899998743232 22222211 1122222 5999999999999986 6777777753
No 5
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=98.83 E-value=3.9e-08 Score=119.80 Aligned_cols=174 Identities=22% Similarity=0.407 Sum_probs=114.8
Q ss_pred cccccCcEEEecCCCCCccEEEEee-----CCeEEEEeCCCceeeeecc----cccc-cccceEEEeecCCCCeEEEEEc
Q 005498 462 AYIYSSPTVVDLDGDGNLDILVGTS-----FGLFYVLDHHGKIREKFPL----EMAE-IQGAVVAADINDDGKIELVTTD 531 (693)
Q Consensus 462 ~~~~ssp~v~DlDGDG~~DIvvg~~-----~G~Lyv~~~~G~~~~~~~~----~~g~-~~ss~~v~DlDgDG~~DLvv~~ 531 (693)
.|...++.++++++++..++|.+.. .|.+++|+..++....... ++|+ ...+++++|+|+||..||+|+.
T Consensus 265 sYLGYsV~~g~f~~~~~~~~VaGAPr~~~~~G~v~if~~~~~~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGA 344 (1030)
T KOG3637|consen 265 SYLGYSVAVGVFSGPGTISFVAGAPRYNHTGGKVYIFQLSGKSLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTDLLVGA 344 (1030)
T ss_pred ceeeEEEEeeeccCCCceEEEecCccccCcccEEEEEeccccccceeeeeeeeeehhhcCeeEEEEEcCCCCCcceEEec
Confidence 4555678889999988888887753 3689999876652211111 1222 3467999999999999999986
Q ss_pred C---------CCcEEEEecCCCeeeEEee--cc------ccccC-cEEEecCCCCCccEEEEcc---C--CcEEEEECCC
Q 005498 532 T---------HGNVAAWTAEGKGIWEQHL--KS------LVTQG-PSIGDVDGDGHSDVVVPTL---S--GNIYVLSGKD 588 (693)
Q Consensus 532 ~---------~G~v~~~~~~G~~~W~~~~--~s------~~~~~-~~vgDlDGDG~~DIvv~s~---~--G~v~~l~~~~ 588 (693)
. .|.|++|.+.+...|.... .. ....+ ..++|+|+||..||+|+.. + |.||+|.+..
T Consensus 345 P~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~~~~~~~RFG~Ala~LGDlN~DG~nDVAVGAP~eg~~~GaVYIy~Gs~ 424 (1030)
T KOG3637|consen 345 PLYFERDRYEVGRVYVYLNGGLGLFPEQITLRGPGGPSGRFGSALAALGDLNQDGYNDVAVGAPFEGDNQGAVYIYHGSK 424 (1030)
T ss_pred CccccCCCCcceEEEEEEecCCCCcccceeEecCCCcccchhhhhhcccCcccCCCCceEEeCCcCCCCCceEEEEcCCC
Confidence 4 4789999887766664432 11 11122 2568999999999999964 3 8999999976
Q ss_pred CceeecceeccCC--------ccccceE-EEeccCCCCCCCCeEEEEEec-CCeEEEEcCC
Q 005498 589 GSKVRPYPYRTHG--------RVMNQVL-LVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGP 639 (693)
Q Consensus 589 G~~~~~~~~~~~g--------~~~s~v~-l~DlDGDG~~dg~lDIvv~s~-dG~ly~~dG~ 639 (693)
+.+...-.....+ .+.-++. -.|+|||| -+||++++. .+.++++.+.
T Consensus 425 ~Gl~~~PSQ~I~g~~~~~~l~~FG~SLsG~~DlDgNg----ypDlaVGA~~s~~vvllrsR 481 (1030)
T KOG3637|consen 425 GGLRSKPSQRIEGSSLGPGLQYFGQSLSGGSDLDGNG----YPDLAVGAFGSGQVVLLRAR 481 (1030)
T ss_pred CCCCCCCceEEeccccCCcccccccccccCccCCCCC----CccEEeccCCCCcEEEEEcc
Confidence 6544322111111 1122222 25888765 499999997 5666666544
No 6
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=6.3e-07 Score=99.15 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=133.2
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccc-
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE- 509 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~- 509 (693)
.+.+++||..+|+++|...+. ....++|++.+ | -|++++.+|.|+.++ .+|+.+|.++.....
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~---------~~~~ssP~v~~----~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVA---------GEALSRPVVSD----G--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEECCCCCCcccccCC---------CceecCCEEEC----C--EEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 357899999999999998753 23456777763 2 366777788999999 589999987654211
Q ss_pred ---cccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccc-----------cccCcEEEecCCCCCccEEE
Q 005498 510 ---IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL-----------VTQGPSIGDVDGDGHSDVVV 574 (693)
Q Consensus 510 ---~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~-----------~~~~~~vgDlDGDG~~DIvv 574 (693)
...++++.+ | -++++..+|.+++++. +|+..|+...... ....+.+.| + -|++
T Consensus 194 ~~~~~~sP~v~~----~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~----~--~vy~ 261 (394)
T PRK11138 194 TLRGESAPATAF----G--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG----G--VVYA 261 (394)
T ss_pred cccCCCCCEEEC----C--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC----C--EEEE
Confidence 123455432 2 3777888899999876 8999998764321 113344431 1 3777
Q ss_pred EccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEe-cCCcc
Q 005498 575 PTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVD-IGETS 652 (693)
Q Consensus 575 ~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~-~g~~~ 652 (693)
.+.+|.+++++..+|+.+|..+.... ..++.. + -.|++.+.+|.+++++..++... ... .....
T Consensus 262 ~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~~~----~-------~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~ 327 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWKREYGSV---NDFAVD----G-------GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL 327 (394)
T ss_pred EEcCCeEEEEECCCCCEEEeecCCCc---cCcEEE----C-------CEEEEEcCCCeEEEEECCCCcEEEcccccCCCc
Confidence 77789999999999999987654321 122211 1 13888888999999998776532 111 12223
Q ss_pred eeeEEEEeecCCCCccEEEEeeCCcEEEEEC
Q 005498 653 YSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 653 ~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
.+.+++. +|. |++++.+|.++++..
T Consensus 328 ~~sp~v~----~g~--l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 328 LTAPVLY----NGY--LVVGDSEGYLHWINR 352 (394)
T ss_pred ccCCEEE----CCE--EEEEeCCCEEEEEEC
Confidence 3344332 233 677777787877764
No 7
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.80 E-value=2.3e-06 Score=93.70 Aligned_cols=206 Identities=18% Similarity=0.280 Sum_probs=132.3
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccc-
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE- 509 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~- 509 (693)
.+.+++||..+|+++|..... ....++|++.+ + -++++..+|.||+++ .+|+.+|.+......
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~---------~~~~~~p~v~~----~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLS---------SEVLSPPLVAN----G--LVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred CCEEEEEECCCCcEeeeeccC---------ceeecCCEEEC----C--EEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 467999999999999997653 22345566532 2 367777788999999 589999987554211
Q ss_pred ---cccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeecccc-----------ccCcEEEecCCCCCccEEE
Q 005498 510 ---IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLV-----------TQGPSIGDVDGDGHSDVVV 574 (693)
Q Consensus 510 ---~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~-----------~~~~~vgDlDGDG~~DIvv 574 (693)
...++.+.+ + .++++..+|.+++++. +|+..|+....... ...+.+. ++ -|++
T Consensus 179 ~~~~~~sp~~~~----~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~----~~--~vy~ 246 (377)
T TIGR03300 179 TLRGSASPVIAD----G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD----GG--QVYA 246 (377)
T ss_pred eecCCCCCEEEC----C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE----CC--EEEE
Confidence 123344432 2 4677777899999986 89999986643211 1223332 11 3677
Q ss_pred EccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EE-ecCCcc
Q 005498 575 PTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VV-DIGETS 652 (693)
Q Consensus 575 ~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i-~~g~~~ 652 (693)
.+.+|.+++++..+|+.+|..+.. ....|. +. + -.|++.+.+|.+++++..++... .. .++...
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~-~~---~-------~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~ 312 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKRDAS---SYQGPA-VD---D-------NRLYVTDADGVVVALDRRSGSELWKNDELKYRQ 312 (377)
T ss_pred EEcCCEEEEEECCCCcEEEeeccC---CccCce-Ee---C-------CEEEEECCCCeEEEEECCCCcEEEccccccCCc
Confidence 777899999999999999876632 122232 21 1 13788888999999998766432 22 223333
Q ss_pred eeeEEEEeecCCCCccEEEEeeCCcEEEEECC
Q 005498 653 YSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (693)
Q Consensus 653 ~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~ 684 (693)
.+.+.+. + + -|++.+.+|.++++...
T Consensus 313 ~ssp~i~---g-~--~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 313 LTAPAVV---G-G--YLVVGDFEGYLHWLSRE 338 (377)
T ss_pred cccCEEE---C-C--EEEEEeCCCEEEEEECC
Confidence 3444332 1 2 37777888888888753
No 8
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.60 E-value=7.2e-06 Score=93.64 Aligned_cols=234 Identities=18% Similarity=0.225 Sum_probs=127.8
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEe---------eCCeEEEEe-CCCceee
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGT---------SFGLFYVLD-HHGKIRE 501 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~---------~~G~Lyv~~-~~G~~~~ 501 (693)
.+.|+++|..+|+++|+........ ......++|++.+ + -+++++ ..|.|++++ .+|+.+|
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~---~~~~i~ssP~v~~----~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVP---PGYTMTGAPTIVK----K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcC---cceEecCCCEEEC----C--EEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 4679999999999999987642110 0011345677765 2 244443 246899999 5899999
Q ss_pred eeccccc--------------------ccccceEEEeecCCCCeEEEEEcCCC------------------cEEEEec-C
Q 005498 502 KFPLEMA--------------------EIQGAVVAADINDDGKIELVTTDTHG------------------NVAAWTA-E 542 (693)
Q Consensus 502 ~~~~~~g--------------------~~~ss~~v~DlDgDG~~DLvv~~~~G------------------~v~~~~~-~ 542 (693)
.++.... .+.++ .+.|..+ | -++++..++ .+++++. +
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~-pa~d~~~-g--~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS-PTYDPKT-N--LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCC-eeEeCCC-C--EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 8765311 01112 2222211 1 255554443 6889987 8
Q ss_pred CCeeeEEeeccc------cccCcEEEe---cCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccc--eEEEe
Q 005498 543 GKGIWEQHLKSL------VTQGPSIGD---VDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQ--VLLVD 611 (693)
Q Consensus 543 G~~~W~~~~~s~------~~~~~~vgD---lDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~--v~l~D 611 (693)
|+..|+.+.... ....+.+.+ ++|....=+++++.+|.+++++..+|+.+|.++....+....+ +.+.-
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~ 345 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGA 345 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEcc
Confidence 999999765321 223445554 4555444466677789999999999999987765421111111 11110
Q ss_pred ccC-CCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecC---------Cccee-eEEEEeecCCCCccEEEEeeCCcEE
Q 005498 612 LTK-RGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIG---------ETSYS-MVLADNVDGGDDLDLIVTTMNGNVF 679 (693)
Q Consensus 612 lDG-DG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g---------~~~~s-~v~~~DlDGDG~lDLvv~s~~G~v~ 679 (693)
.+. .+.......++....+|.+++++..+|... ....+ ..... .+++. + + -|++++.+|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~---g-~--~v~~g~~dG~l~ 419 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA---G-N--LVFAGAADGYFR 419 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec---C-C--eEEEECCCCeEE
Confidence 000 000000000111234688999987776533 33333 11112 22221 1 2 267778889999
Q ss_pred EEECC
Q 005498 680 CFSTP 684 (693)
Q Consensus 680 ~~~~~ 684 (693)
+|...
T Consensus 420 ald~~ 424 (488)
T cd00216 420 AFDAT 424 (488)
T ss_pred EEECC
Confidence 98863
No 9
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.42 E-value=8e-05 Score=75.40 Aligned_cols=224 Identities=25% Similarity=0.336 Sum_probs=124.3
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeccccccc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEI 510 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~g~~ 510 (693)
.+.|.++|+.+|+.+|+..+... .... ... .+.+ + .-+++++..+.|++++. +|+.+|.+... +.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-----~~~~-~~~-~~~~---~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~ 68 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-----IGGP-VAT-AVPD---G--GRVYVASGDGNLYALDAKTGKVLWRFDLP-GPI 68 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-----CSSE-EET-EEEE---T--TEEEEEETTSEEEEEETTTSEEEEEEECS-SCG
T ss_pred CCEEEEEECCCCCEEEEEECCCC-----CCCc-cce-EEEe---C--CEEEEEcCCCEEEEEECCCCCEEEEeecc-ccc
Confidence 46799999999999999976211 0011 111 2222 2 23666678889999994 99999988763 333
Q ss_pred ccceEEEeecCCCCeEEEEEcCCCcEEEEe-cCCCeeeEE-eecccc--ccCcEEEecCCCCCccEEEEccCCcEEEEEC
Q 005498 511 QGAVVAADINDDGKIELVTTDTHGNVAAWT-AEGKGIWEQ-HLKSLV--TQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (693)
Q Consensus 511 ~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~-~~G~~~W~~-~~~s~~--~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~ 586 (693)
...+.+. ++ .|++...++.+++++ .+|+..|+. ...... ........+++ .-++++...+.+++++.
T Consensus 69 ~~~~~~~----~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 69 SGAPVVD----GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG---DRLYVGTSSGKLVALDP 139 (238)
T ss_dssp GSGEEEE----TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET---TEEEEEETCSEEEEEET
T ss_pred cceeeec----cc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEec---CEEEEEeccCcEEEEec
Confidence 3333221 22 366676777899999 599999994 432111 11111122221 22566666899999999
Q ss_pred CCCceeecceeccCCccccce-EEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCC
Q 005498 587 KDGSKVRPYPYRTHGRVMNQV-LLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGD 665 (693)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~v-~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG 665 (693)
++|+.+|.++.... ....+. .+.+..+.-.-.++ .+++.+.+|.++.++-.++...-...-......+. . +|
T Consensus 140 ~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~---~--~~ 212 (238)
T PF13360_consen 140 KTGKLLWKYPVGEP-RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPS---V--DG 212 (238)
T ss_dssp TTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECECEE---C--CC
T ss_pred CCCcEEEEeecCCC-CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccCCce---e--eC
Confidence 99999988876332 111111 01111100000111 57777777876666766665321111111122121 1 22
Q ss_pred CccEEEEeeCCcEEEEECCC
Q 005498 666 DLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 666 ~lDLvv~s~~G~v~~~~~~~ 685 (693)
. -|++.+.+|.+++|...+
T Consensus 213 ~-~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 213 G-TLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp T-EEEEEETTTEEEEEETTT
T ss_pred C-EEEEEeCCCEEEEEECCC
Confidence 2 156666799999998654
No 10
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.36 E-value=1.6e-06 Score=78.92 Aligned_cols=97 Identities=24% Similarity=0.373 Sum_probs=72.1
Q ss_pred cCcEEEeecCCCCCcEEEEeeccCcceeecCCCCCccc---cceeccccccceEEEEECCCCce--------EEEeeccC
Q 005498 385 STPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKEL---GGIDIGKYVAGAIVVFNLDTKQV--------KWTTDLDL 453 (693)
Q Consensus 385 sspaiaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~---~~idi~~~~~G~l~~fd~~tG~i--------~W~~~l~l 453 (693)
+++++.|+||||..+|+++ +..+..+.|++.+-..++ +.+.....+....++|-+.+|++ +|+.+.
T Consensus 3 ~al~~~d~d~dg~~eLlvG-s~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKS-- 79 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVG-SDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKS-- 79 (111)
T ss_pred eEEEEEecCCCCcceEEEe-cCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeecc--
Confidence 5789999999999999987 567789999887544444 23444444455667777777765 577653
Q ss_pred CcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEE
Q 005498 454 STDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYV 492 (693)
Q Consensus 454 ~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv 492 (693)
.....+....|+|+||..+||++..+|++-+
T Consensus 80 --------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 80 --------KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --------CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2234567899999999999999999998754
No 11
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=98.31 E-value=2.5e-05 Score=84.62 Aligned_cols=205 Identities=18% Similarity=0.217 Sum_probs=113.6
Q ss_pred ccCcEEEecCCCCCccEEEEeeCC--eEEEE-eCCCcee--e-ee-cccccccccceEEEeecCCCCeEEEEEcCCC-cE
Q 005498 465 YSSPTVVDLDGDGNLDILVGTSFG--LFYVL-DHHGKIR--E-KF-PLEMAEIQGAVVAADINDDGKIELVTTDTHG-NV 536 (693)
Q Consensus 465 ~ssp~v~DlDGDG~~DIvvg~~~G--~Lyv~-~~~G~~~--~-~~-~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G-~v 536 (693)
+.+...+|+|||-++|+++..... ..|-. ..-|... . .+ ++........+.+.|+|+|+.+||+-...+. +.
T Consensus 88 ivsv~pGDfdGDs~mDVLv~~~~Kd~e~ye~~i~Wg~~~el~~~n~~~~~~t~q~e~ma~Dfn~D~i~Di~G~~~ne~~~ 167 (606)
T KOG4550|consen 88 IVSVVPGDFDGDSQMDVLVTYLPKDYEKYELVIFWGQNQELDPNNMTILNRTFQDEPMAMDFNGDLIPDIFGITNNESNQ 167 (606)
T ss_pred EEEEcccCCCCcceeeEEEEecCCcceeeEEEEeecccccccccccHHHHHhhcCCcEEEEcCCCcceeecccccccccC
Confidence 446778999999999999976433 22211 0011110 0 00 1111122345789999999999998776542 22
Q ss_pred EEEecCCCee---eEEe------eccccccCcEEEecCCCCCccEEEEccC--Cc--EEEEECCCCceeec--ceeccCC
Q 005498 537 AAWTAEGKGI---WEQH------LKSLVTQGPSIGDVDGDGHSDVVVPTLS--GN--IYVLSGKDGSKVRP--YPYRTHG 601 (693)
Q Consensus 537 ~~~~~~G~~~---W~~~------~~s~~~~~~~vgDlDGDG~~DIvv~s~~--G~--v~~l~~~~G~~~~~--~~~~~~g 601 (693)
..+...|+.. |-.. ..-..+++-++.|+|+|=..||++.+.. +. .-.|.+.++.+..+ .+....+
T Consensus 168 ~~i~~~g~l~llc~H~a~~t~~KlN~~ip~~hafiDLn~Df~ADlfl~Tk~s~~t~~~eiW~~~~~nfs~~~~~~kp~pa 247 (606)
T KOG4550|consen 168 PQILLGGNLSLLCWHPALTTTSKLNMRIPHSHAFIDLNEDFTADLFLTTKASTSTFQFEIWENLDGNFSVSTILEKPQPA 247 (606)
T ss_pred cceecCCCCChhhcccccccchhccccCCCcceeEeccccceeeeEEEeccCCCceeeehhhcCCCceEEEEEccCCCCC
Confidence 2333444433 4322 2223455668999999999999998742 22 33566656654321 1222222
Q ss_pred c--cccceEEEeccCCCCCCCCeEEEEEec------CCeEEEE-cCCCCcee-EEecC-------------Ccc----ee
Q 005498 602 R--VMNQVLLVDLTKRGEKSKGLTIVTTSF------DGYLYLI-DGPTSCAD-VVDIG-------------ETS----YS 654 (693)
Q Consensus 602 ~--~~s~v~l~DlDGDG~~dg~lDIvv~s~------dG~ly~~-dG~~g~~~-~i~~g-------------~~~----~s 654 (693)
. +..+.++.|+++| |.+||++... ...+|.. +|...+.. ..++. +.. .-
T Consensus 248 n~~~vGq~vfmDfd~d----G~~dilvP~C~~~nC~~sti~~v~sgtk~w~~v~~df~d~g~tw~fvPfv~~~~~~~~~i 323 (606)
T KOG4550|consen 248 NMMVVGQSVFMDFDGD----GHMDILVPGCEDKNCQKSTIYLVRSGTKQWVPVLQDFSDKGTTWGFVPFVDEQQPTEIPI 323 (606)
T ss_pred CceeecceEEEeecCC----cceeeeecceeccccccceeeeeeccchhhhhheecccccceEEEEecCcccccccceeE
Confidence 2 2355678999987 5599987642 1234333 33311111 00110 000 11
Q ss_pred eEEEEeecCCCCccEEEEe
Q 005498 655 MVLADNVDGGDDLDLIVTT 673 (693)
Q Consensus 655 ~v~~~DlDGDG~lDLvv~s 673 (693)
...++|++=||.+|++|.-
T Consensus 324 t~r~GdfnlDgyPD~lVil 342 (606)
T KOG4550|consen 324 TLRIGDFNLDGYPDALVIL 342 (606)
T ss_pred EEEecccccCCCCceEEEe
Confidence 3458999999999999874
No 12
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.25 E-value=0.00011 Score=84.87 Aligned_cols=197 Identities=21% Similarity=0.305 Sum_probs=118.1
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccc--cccccccCcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeecccc--
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNAS--FRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEM-- 507 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~--~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~-- 507 (693)
+.|+++|..+|+++|+........... +.......+++.+ + -|++++.+++|++++. +|+.+|.+....
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~----~--~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~ 152 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD----G--KVFFGTLDARLVALDAKTGKVVWSKKNGDYK 152 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC----C--EEEEEcCCCEEEEEECCCCCEEeeccccccc
Confidence 468999999999999987643211000 0000111233322 2 3677788899999995 899999875431
Q ss_pred --cccccceEEEeecCCCCeEEEEEcC------CCcEEEEec-CCCeeeEEeeccccc----------------------
Q 005498 508 --AEIQGAVVAADINDDGKIELVTTDT------HGNVAAWTA-EGKGIWEQHLKSLVT---------------------- 556 (693)
Q Consensus 508 --g~~~ss~~v~DlDgDG~~DLvv~~~------~G~v~~~~~-~G~~~W~~~~~s~~~---------------------- 556 (693)
..+.+++++. +|+ |+++.. .|.+++++. +|+.+|+........
T Consensus 153 ~~~~~tssP~v~----~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 153 AGYTITAAPLVV----KGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccCCcEEE----CCE--EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 1234456654 232 455432 578999988 899999866431110
Q ss_pred -----cCcEEEecCCCCCccEE-EEccC----------------CcEEEEECCCCceeecceeccCC----ccccceEEE
Q 005498 557 -----QGPSIGDVDGDGHSDVV-VPTLS----------------GNIYVLSGKDGSKVRPYPYRTHG----RVMNQVLLV 610 (693)
Q Consensus 557 -----~~~~vgDlDGDG~~DIv-v~s~~----------------G~v~~l~~~~G~~~~~~~~~~~g----~~~s~v~l~ 610 (693)
......=+--|...+++ +++.+ ..+++++.++|+..|.|....+. ....++.+.
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 00011111223444544 44321 26889999999999988764432 234667788
Q ss_pred eccCCCCCCCCeEEEEEecCCeEEEEcCCCCce
Q 005498 611 DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA 643 (693)
Q Consensus 611 DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~ 643 (693)
|++.||+ ...-++.+..+|++|+++..+|..
T Consensus 307 d~~~~G~--~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 307 DLKKDGK--PRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EeccCCc--EEEEEEEeCCCceEEEEECCCCce
Confidence 9865432 123344677899999999887754
No 13
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=98.22 E-value=2.4e-06 Score=69.29 Aligned_cols=56 Identities=30% Similarity=0.611 Sum_probs=36.3
Q ss_pred eecCCCCeEEEEEcCCCcEEEEecCCCeeeEEe--ec---cccccCcEEEecCCCCCccEEE
Q 005498 518 DINDDGKIELVTTDTHGNVAAWTAEGKGIWEQH--LK---SLVTQGPSIGDVDGDGHSDVVV 574 (693)
Q Consensus 518 DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~--~~---s~~~~~~~vgDlDGDG~~DIvv 574 (693)
|+|+||++||+++. .+.+++|..++...|... .. ......+.++|+|+||++||+|
T Consensus 1 D~ngDG~~Div~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-DGSVYVYLNDGDGTFQFPAQIPFSSSGSGWSVAFADIDGDGKPDILV 61 (61)
T ss_dssp -SSSSSS-EEEEE--SSSEEEEEB-SSS-BEEEEEEBTTCSGGTTTTCEE-SSSSSS-EEE-
T ss_pred CCCCCCCccEEEEe-CCCeEEEEECCCCCeEEeeeEeeCCCCCcceeEEEEccCCCcccEEC
Confidence 79999999999998 677888877665555432 11 1223468899999999999986
No 14
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=98.11 E-value=3.8e-06 Score=68.14 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=34.3
Q ss_pred ecCCCCCccEEEEeeCCeEEEEeCC--Cceeeeecccc--cccccceEEEeecCCCCeEEEE
Q 005498 472 DLDGDGNLDILVGTSFGLFYVLDHH--GKIREKFPLEM--AEIQGAVVAADINDDGKIELVT 529 (693)
Q Consensus 472 DlDGDG~~DIvvg~~~G~Lyv~~~~--G~~~~~~~~~~--g~~~ss~~v~DlDgDG~~DLvv 529 (693)
|+|+||++||+++. .+.+++|.+. |++........ ......+.++|+|+||++||+|
T Consensus 1 D~ngDG~~Div~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-DGSVYVYLNDGDGTFQFPAQIPFSSSGSGWSVAFADIDGDGKPDILV 61 (61)
T ss_dssp -SSSSSS-EEEEE--SSSEEEEEB-SSS-BEEEEEEBTTCSGGTTTTCEE-SSSSSS-EEE-
T ss_pred CCCCCCCccEEEEe-CCCeEEEEECCCCCeEEeeeEeeCCCCCcceeEEEEccCCCcccEEC
Confidence 79999999999987 5666666654 44433222211 2234468999999999999986
No 15
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.07 E-value=0.00041 Score=70.21 Aligned_cols=178 Identities=26% Similarity=0.336 Sum_probs=106.7
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeee-cccccc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKF-PLEMAE 509 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~-~~~~g~ 509 (693)
.+.|++++..+|+++|+..+.- .....+.+.+ ..|++++.++.|+.++ .+|+.+|.. ......
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~---------~~~~~~~~~~------~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPG---------PISGAPVVDG------GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSS---------CGGSGEEEET------TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred CCEEEEEECCCCCEEEEeeccc---------cccceeeecc------cccccccceeeeEecccCCcceeeeeccccccc
Confidence 4679999999999999998631 1112243332 2467777778999999 799999984 322110
Q ss_pred -cccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccC-c-----EEEec-CCCCCccEEEEccCCc
Q 005498 510 -IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQG-P-----SIGDV-DGDGHSDVVVPTLSGN 580 (693)
Q Consensus 510 -~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~-~-----~vgDl-DGDG~~DIvv~s~~G~ 580 (693)
.........++++ -++++...+.+++++. +|+.+|........... . ..+.+ -.+| .+++.+.++.
T Consensus 110 ~~~~~~~~~~~~~~---~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~ 184 (238)
T PF13360_consen 110 AGVRSSSSPAVDGD---RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGR 184 (238)
T ss_dssp CSTB--SEEEEETT---EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSS
T ss_pred cccccccCceEecC---EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCe
Confidence 0111112222222 3666767899999996 89999998764322110 0 01111 1123 6888887888
Q ss_pred EEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc
Q 005498 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC 642 (693)
Q Consensus 581 v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~ 642 (693)
++.++..+|+.+|..+ ... ... +....+ --|++.+.++.+++++-.++.
T Consensus 185 ~~~~d~~tg~~~w~~~--~~~-~~~---~~~~~~-------~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 185 VVAVDLATGEKLWSKP--ISG-IYS---LPSVDG-------GTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTEEEEEEC--SS--ECE---CEECCC-------TEEEEEETTTEEEEEETTTTE
T ss_pred EEEEECCCCCEEEEec--CCC-ccC---CceeeC-------CEEEEEeCCCEEEEEECCCCC
Confidence 8888888998776333 221 111 112222 236666688999999987765
No 16
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.86 E-value=0.0029 Score=69.55 Aligned_cols=179 Identities=25% Similarity=0.303 Sum_probs=111.8
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeecccc-cc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEM-AE 509 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~-g~ 509 (693)
.|.++++++.++.++|...+.. .....+.+.+.. ||+ |++++.+|.+|+++. +|+..|.+.... ..
T Consensus 77 ~G~i~A~d~~~g~~~W~~~~~~-------~~~~~~~~~~~~---~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 77 DGNIFALNPDTGLVKWSYPLLG-------AVAQLSGPILGS---DGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CCcEEEEeCCCCcEEecccCcC-------cceeccCceEEe---CCe--EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 4579999999999999887642 122345666666 665 999999999999997 899999887653 11
Q ss_pred cccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccc----cccCcEEEecCCCCCcc-EEEEcc--CCcE
Q 005498 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL----VTQGPSIGDVDGDGHSD-VVVPTL--SGNI 581 (693)
Q Consensus 510 ~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~----~~~~~~vgDlDGDG~~D-Ivv~s~--~G~v 581 (693)
....++ -+||. +++.+.++++++++. +|...|....... ....+.+ ..+ +++... ++.+
T Consensus 145 ~~~~~v----~~~~~--v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-------~~~~vy~~~~~~~~~~ 211 (370)
T COG1520 145 YASPPV----VGDGT--VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-------ASGTVYVGSDGYDGIL 211 (370)
T ss_pred EecCcE----EcCcE--EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-------ecceEEEecCCCcceE
Confidence 122222 33442 444446799999988 5999999765421 1222222 123 344444 4579
Q ss_pred EEEECCCCceeecceeccCCccc----cceE---EEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce
Q 005498 582 YVLSGKDGSKVRPYPYRTHGRVM----NQVL---LVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA 643 (693)
Q Consensus 582 ~~l~~~~G~~~~~~~~~~~g~~~----s~v~---l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~ 643 (693)
++++..+|.+.|..+....-... .+.. ...+++ .++.+...|.+++++..++..
T Consensus 212 ~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~--------~~~~~~~~g~~~~l~~~~G~~ 272 (370)
T COG1520 212 YALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG--------GVYAGSYGGKLLCLDADTGEL 272 (370)
T ss_pred EEEEccCCcEeeeeeeecccCcccccccccccCceEEECC--------cEEEEecCCeEEEEEcCCCce
Confidence 99999899999874332211100 0100 112221 146777778888888877654
No 17
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.81 E-value=0.00027 Score=64.57 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=74.8
Q ss_pred cCcEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCe
Q 005498 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (693)
Q Consensus 466 ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~ 545 (693)
++.++.|+|+||..+|++++.+..|.+|+++- .+...+.. . ....+..+.. .-+..+-.+|.+-+|+. ...
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-~~~Ei~e~-~---~v~~L~~~~~---~~F~Y~l~NGTVGvY~~-~~R 73 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVFKGDE-IVAEITET-D---KVTSLCSLGG---GRFAYALANGTVGVYDR-SQR 73 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEEeCCc-EEEEEecc-c---ceEEEEEcCC---CEEEEEecCCEEEEEeC-cce
Confidence 46789999999999999999999999998763 33333221 1 1123333333 23666677888888865 556
Q ss_pred eeEEeeccccccCcEEEecCCCCCccEEEEccCCcE
Q 005498 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNI 581 (693)
Q Consensus 546 ~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v 581 (693)
.|...-... ...+...|+|+||.++|+++-.+|.+
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeE
Confidence 797664433 45678899999999999999777765
No 18
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=97.78 E-value=0.00034 Score=76.09 Aligned_cols=198 Identities=15% Similarity=0.191 Sum_probs=107.7
Q ss_pred cEEEecCCCCCccEEEEeeC-CeEEEEeCC-Cc--eeeeecccc---cccccceEEEeecCCCCeEEEEEcCCCcEEEEe
Q 005498 468 PTVVDLDGDGNLDILVGTSF-GLFYVLDHH-GK--IREKFPLEM---AEIQGAVVAADINDDGKIELVTTDTHGNVAAWT 540 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~-G~Lyv~~~~-G~--~~~~~~~~~---g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~ 540 (693)
.+++|+|.|-..||+|-... ..+.++-.. -. +........ .....++..+|+|||-.+|+++.-.......++
T Consensus 38 aAFGDfNsD~~TD~fV~r~G~~~l~~ll~~~~ap~fkpg~~~~~~~~s~~ivsv~pGDfdGDs~mDVLv~~~~Kd~e~ye 117 (606)
T KOG4550|consen 38 AAFGDFNSDKQTDLFVLREGRNDLIVLLADQNAPYFKPGVKVSFKNHSALIVSVVPGDFDGDSQMDVLVTYLPKDYEKYE 117 (606)
T ss_pred eeecccCcccccceEEEecCcccceeeehhccccccccCCceeecCCcceEEEEcccCCCCcceeeEEEEecCCcceeeE
Confidence 56899999999999986542 223333221 11 111111111 112456889999999999999886543222221
Q ss_pred cCCCeeeEEe----------eccccccCcEEEecCCCCCccEEEEccCC-cEEEEECCCCcee---ec----ceeccCCc
Q 005498 541 AEGKGIWEQH----------LKSLVTQGPSIGDVDGDGHSDVVVPTLSG-NIYVLSGKDGSKV---RP----YPYRTHGR 602 (693)
Q Consensus 541 ~~G~~~W~~~----------~~s~~~~~~~vgDlDGDG~~DIvv~s~~G-~v~~l~~~~G~~~---~~----~~~~~~g~ 602 (693)
. ...|... ...+.-..+.+.|+|+|+.+||+-.+.+. ....+. ..|+.. |. ++....-+
T Consensus 118 ~--~i~Wg~~~el~~~n~~~~~~t~q~e~ma~Dfn~D~i~Di~G~~~ne~~~~~i~-~~g~l~llc~H~a~~t~~KlN~~ 194 (606)
T KOG4550|consen 118 L--VIFWGQNQELDPNNMTILNRTFQDEPMAMDFNGDLIPDIFGITNNESNQPQIL-LGGNLSLLCWHPALTTTSKLNMR 194 (606)
T ss_pred E--EEeecccccccccccHHHHHhhcCCcEEEEcCCCcceeecccccccccCccee-cCCCCChhhcccccccchhcccc
Confidence 1 1223221 11123345778999999999998876532 222222 234432 22 12222223
Q ss_pred cccceEEEeccCCCCCCCCeEEEEEec--CCeE--EEEcCCCCcee---EEe--cCCc--ceeeEEEEeecCCCCccEEE
Q 005498 603 VMNQVLLVDLTKRGEKSKGLTIVTTSF--DGYL--YLIDGPTSCAD---VVD--IGET--SYSMVLADNVDGGDDLDLIV 671 (693)
Q Consensus 603 ~~s~v~l~DlDGDG~~dg~lDIvv~s~--dG~l--y~~dG~~g~~~---~i~--~g~~--~~s~v~~~DlDGDG~lDLvv 671 (693)
+..+-++.|+|+|- -.||+..+. ++.+ -++.+..+... .+. ++.. ....+++.|+|+||..||+|
T Consensus 195 ip~~hafiDLn~Df----~ADlfl~Tk~s~~t~~~eiW~~~~~nfs~~~~~~kp~pan~~~vGq~vfmDfd~dG~~dilv 270 (606)
T KOG4550|consen 195 IPHSHAFIDLNEDF----TADLFLTTKASTSTFQFEIWENLDGNFSVSTILEKPQPANMMVVGQSVFMDFDGDGHMDILV 270 (606)
T ss_pred CCCcceeEeccccc----eeeeEEEeccCCCceeeehhhcCCCceEEEEEccCCCCCCceeecceEEEeecCCcceeeee
Confidence 45666799999873 378877653 3322 12333322211 111 1111 12345678999999999999
Q ss_pred E
Q 005498 672 T 672 (693)
Q Consensus 672 ~ 672 (693)
.
T Consensus 271 P 271 (606)
T KOG4550|consen 271 P 271 (606)
T ss_pred c
Confidence 6
No 19
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.71 E-value=0.0018 Score=77.75 Aligned_cols=197 Identities=22% Similarity=0.298 Sum_probs=116.2
Q ss_pred ceEEEEECCCCceEEEeeccCCcCc----cccccccccC-------------cEEEecCCCCCccEEEEeeCCeEEEEe-
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDN----ASFRAYIYSS-------------PTVVDLDGDGNLDILVGTSFGLFYVLD- 494 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~----~~~~~~~~ss-------------p~v~DlDGDG~~DIvvg~~~G~Lyv~~- 494 (693)
+.|+++|..+|+.+|+......... ..|++..+.. ++++ ..-|++++.+++|++++
T Consensus 204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~------~~rV~~~T~Dg~LiALDA 277 (764)
T TIGR03074 204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC------ARRIILPTSDARLIALDA 277 (764)
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc------CCEEEEecCCCeEEEEEC
Confidence 5799999999999999876543211 1122221110 1111 12477888899999999
Q ss_pred CCCceeeeeccc--------cc-------ccccceEEEeecCCCCeEEEEEc----------CCCcEEEEec-CCCeeeE
Q 005498 495 HHGKIREKFPLE--------MA-------EIQGAVVAADINDDGKIELVTTD----------THGNVAAWTA-EGKGIWE 548 (693)
Q Consensus 495 ~~G~~~~~~~~~--------~g-------~~~ss~~v~DlDgDG~~DLvv~~----------~~G~v~~~~~-~G~~~W~ 548 (693)
.+|+..|.|... ++ ...+++++.+ + -||++. ..|.+++|+. +|+..|.
T Consensus 278 ~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~----g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 278 DTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG----T--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred CCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC----C--EEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 579999876431 00 1234455552 2 245543 2578999987 8999998
Q ss_pred Eeecccc-----------------ccCcEEEecC--------CCCCccEEEE-------ccCCcEEEEECCCCceeecce
Q 005498 549 QHLKSLV-----------------TQGPSIGDVD--------GDGHSDVVVP-------TLSGNIYVLSGKDGSKVRPYP 596 (693)
Q Consensus 549 ~~~~s~~-----------------~~~~~vgDlD--------GDG~~DIvv~-------s~~G~v~~l~~~~G~~~~~~~ 596 (693)
....... .......|-. |...+|..-. ...+.+++++..+|+..|.+.
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 7642110 0011112210 1111111111 124679999999999999876
Q ss_pred eccCC----ccccceEEEeccC-CCCCCCCeEEEEEecCCeEEEEcCCCCce
Q 005498 597 YRTHG----RVMNQVLLVDLTK-RGEKSKGLTIVTTSFDGYLYLIDGPTSCA 643 (693)
Q Consensus 597 ~~~~g----~~~s~v~l~DlDG-DG~~dg~lDIvv~s~dG~ly~~dG~~g~~ 643 (693)
...+. ...+++.+.|+.. ||. ...-++.++.+|++|+++..+|..
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~--~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGT--TVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCc--EeeEEEEECCCCEEEEEECCCCCE
Confidence 53321 2456677888853 321 123577788999999999887753
No 20
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.0033 Score=65.15 Aligned_cols=136 Identities=16% Similarity=0.234 Sum_probs=96.5
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccC-cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSS-PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ss-p~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~ 509 (693)
.+.+.+.|+.+|++.|+..+.. .+-.+ .++.|+ ||+++..|.||.+. .+|...|.|... +.
T Consensus 32 s~~~~avd~~sG~~~We~ilg~---------RiE~sa~vvgdf-------VV~GCy~g~lYfl~~~tGs~~w~f~~~-~~ 94 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILGV---------RIECSAIVVGDF-------VVLGCYSGGLYFLCVKTGSQIWNFVIL-ET 94 (354)
T ss_pred CceEEEecCCCCcEEeehhhCc---------eeeeeeEEECCE-------EEEEEccCcEEEEEecchhheeeeeeh-hh
Confidence 3567889999999999987642 22223 345554 88999999999998 789888887653 22
Q ss_pred cccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCC
Q 005498 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (693)
Q Consensus 510 ~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~ 588 (693)
...-+..|+++ . -|.+++.+++.++++. +-.-.|+.+..+....++.+.- |.--|+++...|.+.+...++
T Consensus 95 -vk~~a~~d~~~--g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~----g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 95 -VKVRAQCDFDG--G-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP----GDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred -hccceEEcCCC--c-eEEEecCCCcEEEecccccceEEecccCCceeccceecC----CCceEEEEeccceEEEEccCC
Confidence 22234556554 2 4788889999999988 4455788777777766776653 334588888889999888777
Q ss_pred Ccee
Q 005498 589 GSKV 592 (693)
Q Consensus 589 G~~~ 592 (693)
+...
T Consensus 167 ~~~~ 170 (354)
T KOG4649|consen 167 YSST 170 (354)
T ss_pred CCcc
Confidence 7443
No 21
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.57 E-value=0.01 Score=68.68 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=44.1
Q ss_pred eEEEEe-CCCceeeeeccccc-----ccccceEEEeecCCCC--eEEEEEcCCCcEEEEec-CCCeee
Q 005498 489 LFYVLD-HHGKIREKFPLEMA-----EIQGAVVAADINDDGK--IELVTTDTHGNVAAWTA-EGKGIW 547 (693)
Q Consensus 489 ~Lyv~~-~~G~~~~~~~~~~g-----~~~ss~~v~DlDgDG~--~DLvv~~~~G~v~~~~~-~G~~~W 547 (693)
.|++++ .+|+..|.|..... .....+.+.|++.||+ .=|+.+..+|.++++++ +|+.+|
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 477888 57999998765431 2446788999877777 45567788999999988 788753
No 22
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.50 E-value=0.014 Score=64.14 Aligned_cols=177 Identities=26% Similarity=0.454 Sum_probs=106.3
Q ss_pred EEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeecccc-ccccc
Q 005498 435 IVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEM-AEIQG 512 (693)
Q Consensus 435 l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~-g~~~s 512 (693)
+...+..+|+..|...+... ....+..+..++ .|| =|+++..+|.|++++. +|+.+|..+... ....+
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~------~~~~~~~~~~~~--~dg--~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~ 104 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSG------GGGIYAGPAPAD--GDG--TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS 104 (370)
T ss_pred eEEEcccCcceeeeeecccC------ccceEeccccEe--eCC--eEEEecCCCcEEEEeCCCCcEEecccCcCcceecc
Confidence 33445566888997653211 122334442122 233 3566678889999994 677788765542 12233
Q ss_pred ceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeecc-cc-ccCcEEEecCCCCCccEEEEccCCcEEEEECCCC
Q 005498 513 AVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKS-LV-TQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (693)
Q Consensus 513 s~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s-~~-~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G 589 (693)
.+.+.. ||+ |++++.+|.++|++. +|...|...... .. ...+.++| | -+++.+.++.+++++..+|
T Consensus 105 ~~~~~~---~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~----~--~v~~~s~~g~~~al~~~tG 173 (370)
T COG1520 105 GPILGS---DGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGD----G--TVYVGTDDGHLYALNADTG 173 (370)
T ss_pred CceEEe---CCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcC----c--EEEEecCCCeEEEEEccCC
Confidence 344443 666 999999999999999 899999988776 22 22233332 1 2444446799999999999
Q ss_pred ceeecceecc--CCccccceEEEeccCCCCCCCCeEEEEEec--CCeEEEEcCCCCc
Q 005498 590 SKVRPYPYRT--HGRVMNQVLLVDLTKRGEKSKGLTIVTTSF--DGYLYLIDGPTSC 642 (693)
Q Consensus 590 ~~~~~~~~~~--~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~--dG~ly~~dG~~g~ 642 (693)
+..|.+.... .......+.+. ++ -+++... +++++.++...|.
T Consensus 174 ~~~W~~~~~~~~~~~~~~~~~~~----~~------~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 174 TLKWTYETPAPLSLSIYGSPAIA----SG------TVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred cEEEEEecCCccccccccCceee----cc------eEEEecCCCcceEEEEEccCCc
Confidence 9998866543 22223333211 11 1555555 5678888765553
No 23
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.29 E-value=0.0053 Score=63.68 Aligned_cols=147 Identities=25% Similarity=0.344 Sum_probs=105.3
Q ss_pred CCCeEEEEEcCCCcEEEEec-CCCeeeEEeecccccc-CcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceecc
Q 005498 522 DGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQ-GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRT 599 (693)
Q Consensus 522 DG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~-~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~ 599 (693)
|-+.-++++++.+.+.+.+. .|+..|+......... .+.++|+ +|++..+|.+|.+.-++|...|.|....
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdf-------VV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDF-------VVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCE-------EEEEEccCcEEEEEecchhheeeeeehh
Confidence 44677888888899999887 8999999876655433 3456766 8899999999999999999997776543
Q ss_pred CCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCC-ceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcE
Q 005498 600 HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS-CADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNV 678 (693)
Q Consensus 600 ~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g-~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v 678 (693)
.- ... ...|+++ --|+.++.++.+|+++-.+. +.-....|++.++.|+++ -++| -|+++...|.|
T Consensus 94 ~v--k~~-a~~d~~~-------glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~--~g~~--sly~a~t~G~v 159 (354)
T KOG4649|consen 94 TV--KVR-AQCDFDG-------GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIA--PGDG--SLYAAITAGAV 159 (354)
T ss_pred hh--ccc-eEEcCCC-------ceEEEecCCCcEEEecccccceEEecccCCceeccceec--CCCc--eEEEEeccceE
Confidence 32 211 2456654 34889999999999997654 445666777777777654 1244 38898889988
Q ss_pred EEEEC-CCCCCc
Q 005498 679 FCFST-PAPHHP 689 (693)
Q Consensus 679 ~~~~~-~~~~~p 689 (693)
.+..- ..++|.
T Consensus 160 lavt~~~~~~~~ 171 (354)
T KOG4649|consen 160 LAVTKNPYSSTE 171 (354)
T ss_pred EEEccCCCCcce
Confidence 87753 334444
No 24
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.76 E-value=0.038 Score=66.54 Aligned_cols=160 Identities=22% Similarity=0.292 Sum_probs=95.9
Q ss_pred cceEEEEECCCCceEEEeecc----CCcCccccc--c-ccccCcEEEecCCCCCccEEEEee----------CCeEEEEe
Q 005498 432 AGAIVVFNLDTKQVKWTTDLD----LSTDNASFR--A-YIYSSPTVVDLDGDGNLDILVGTS----------FGLFYVLD 494 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~----l~~~~~~~~--~-~~~ssp~v~DlDGDG~~DIvvg~~----------~G~Lyv~~ 494 (693)
++.|+++|..+|++.|..... +...-.... . ..-++|++++ .-||++.. .|.|+.|+
T Consensus 269 Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~------g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 269 DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG------TTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC------CEEEEEecccccccccCCCcEEEEEE
Confidence 578999999999999976432 111000001 1 1235677775 13555532 57899999
Q ss_pred -CCCceeeeecccc---------cc-------cccceEEEeecC--------CCCeEEEEE-------cCCCcEEEEec-
Q 005498 495 -HHGKIREKFPLEM---------AE-------IQGAVVAADIND--------DGKIELVTT-------DTHGNVAAWTA- 541 (693)
Q Consensus 495 -~~G~~~~~~~~~~---------g~-------~~ss~~v~DlDg--------DG~~DLvv~-------~~~G~v~~~~~- 541 (693)
.+|+.+|.|.... +. ........|-.. ...+|..-. ...+.+.+++.
T Consensus 343 a~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 343 VNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred CCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence 6899999875321 10 001222333211 111111111 12346778877
Q ss_pred CCCeeeEEeecc------ccccCcEEEecCC-CC--CccEEEEccCCcEEEEECCCCceeeccee
Q 005498 542 EGKGIWEQHLKS------LVTQGPSIGDVDG-DG--HSDVVVPTLSGNIYVLSGKDGSKVRPYPY 597 (693)
Q Consensus 542 ~G~~~W~~~~~s------~~~~~~~vgDlDG-DG--~~DIvv~s~~G~v~~l~~~~G~~~~~~~~ 597 (693)
+|+..|..+... .....+.+.|+.. || .+-|++++.+|.+|+++..+|+.+|..+.
T Consensus 423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 899999876521 2345678889865 66 34577778899999999999999987554
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.42 E-value=0.35 Score=52.50 Aligned_cols=221 Identities=15% Similarity=0.182 Sum_probs=119.8
Q ss_pred cccceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeccccc
Q 005498 430 YVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMA 508 (693)
Q Consensus 430 ~~~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~g 508 (693)
.++|.|++|...+|..+|......... .+..-.| .+. =+++|+.+|.+++|.. .+.....++ |
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~di-----eWl~WHp-~a~-------illAG~~DGsvWmw~ip~~~~~kv~~---G 188 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDI-----EWLKWHP-RAH-------ILLAGSTDGSVWMWQIPSQALCKVMS---G 188 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCce-----EEEEecc-ccc-------EEEeecCCCcEEEEECCCcceeeEec---C
Confidence 457889999999999999864211100 1111112 111 1455667888888884 333222222 2
Q ss_pred ccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECC
Q 005498 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (693)
Q Consensus 509 ~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~ 587 (693)
.......++|=.||+. ++.+..+|.+.+|+. +|.+.....-.. .......+++.+|.. ++-++..+.++...+.
T Consensus 189 -h~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~~~~~~~~~-~~~g~~e~~~~~~~~~ 263 (399)
T KOG0296|consen 189 -HNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCISLNLAGST-LTKGNSEGVACGVNNG 263 (399)
T ss_pred -CCCCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccc--cCcCCccccccccce-eEeccCCccEEEEccc
Confidence 3345678888889885 677777999999988 788777544211 111122334444433 3444455566666666
Q ss_pred CCceeeccee----ccCC------ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCcceeeEE
Q 005498 588 DGSKVRPYPY----RTHG------RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVL 657 (693)
Q Consensus 588 ~G~~~~~~~~----~~~g------~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~ 657 (693)
+|+.+....- .... .+-..+...++ +-..++.-+|.+.+|+-.......+--.+.+.
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l---------pL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V---- 330 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL---------PLAACGSVDGTIAIYDLAASTLRHICEHEDGV---- 330 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhccccccc---------chhhcccccceEEEEecccchhheeccCCCce----
Confidence 6665532221 0000 01111122222 22445667888888876554433332222221
Q ss_pred EEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 658 ADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 658 ~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.++--.+...|+.++.+|.|+.|....
T Consensus 331 -~~l~w~~t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 331 -TKLKWLNTDYLLTACANGKVRQWDART 357 (399)
T ss_pred -EEEEEcCcchheeeccCceEEeeeccc
Confidence 122222366789999999999998654
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.95 E-value=1.9 Score=42.48 Aligned_cols=214 Identities=19% Similarity=0.172 Sum_probs=115.3
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEee-CCeEEEEeCC-Cceeeeecccccc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDHH-GKIREKFPLEMAE 509 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~-~G~Lyv~~~~-G~~~~~~~~~~g~ 509 (693)
.+.+.+|+..+++........ ...+....+..++ .+++++. ++.+++++.. ++....+...
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--- 134 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGH------------TSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGH--- 134 (289)
T ss_pred CCeEEEEEcCcccceEEEecc------------CCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccC---
Confidence 356777777665433332210 0123445555553 4666665 8889998854 5544433311
Q ss_pred cccceEEEeecCCCCeEEEEEcCCCcEEEEecC-CCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCC
Q 005498 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (693)
Q Consensus 510 ~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~-G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~ 588 (693)
...+....++.++. -++++..++.+.+|+.. +........ ....+....+..+|. .+++++.++.+..|+...
T Consensus 135 -~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 135 -TDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST 208 (289)
T ss_pred -CCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEec---CccccceEEECCCcC-EEEEecCCCcEEEEECCC
Confidence 12345555666643 23344448889999874 443332221 111334455666663 466776789999999877
Q ss_pred CceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCc
Q 005498 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDL 667 (693)
Q Consensus 589 G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~l 667 (693)
+.....+... ..++....++.++ .-+++++.+|.+++++...+... .+.... ..+....+..+|..
T Consensus 209 ~~~~~~~~~~-----~~~i~~~~~~~~~-----~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~ 275 (289)
T cd00200 209 GKCLGTLRGH-----ENGVNSVAFSPDG-----YLLASGSEDGTIRVWDLRTGECVQTLSGHT---NSVTSLAWSPDGKR 275 (289)
T ss_pred Cceecchhhc-----CCceEEEEEcCCC-----cEEEEEcCCCcEEEEEcCCceeEEEccccC---CcEEEEEECCCCCE
Confidence 7665433211 1244445554432 23444444899999886644322 222111 12323346777643
Q ss_pred cEEEEeeCCcEEEEE
Q 005498 668 DLIVTTMNGNVFCFS 682 (693)
Q Consensus 668 DLvv~s~~G~v~~~~ 682 (693)
|++++.+|.+.+|+
T Consensus 276 -l~~~~~d~~i~iw~ 289 (289)
T cd00200 276 -LASGSADGTIRIWD 289 (289)
T ss_pred -EEEecCCCeEEecC
Confidence 77778889988874
No 27
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=95.95 E-value=0.006 Score=44.14 Aligned_cols=28 Identities=36% Similarity=0.700 Sum_probs=20.5
Q ss_pred cCcEEEecCCCCCccEEEE----ccCCcEEEE
Q 005498 557 QGPSIGDVDGDGHSDVVVP----TLSGNIYVL 584 (693)
Q Consensus 557 ~~~~vgDlDGDG~~DIvv~----s~~G~v~~l 584 (693)
.+++++|+|+||++||+++ ..+|.+|+|
T Consensus 3 ~~~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 3 SSVAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp SCEEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cccEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 4678899999999999996 334555554
No 28
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=95.86 E-value=0.0072 Score=43.74 Aligned_cols=28 Identities=46% Similarity=0.657 Sum_probs=21.3
Q ss_pred cCcEEEecCCCCCccEEEE----eeCCeEEEE
Q 005498 466 SSPTVVDLDGDGNLDILVG----TSFGLFYVL 493 (693)
Q Consensus 466 ssp~v~DlDGDG~~DIvvg----~~~G~Lyv~ 493 (693)
.+++++|+|+||+.||+++ ...|++|+|
T Consensus 3 ~~~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 3 SSVAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp SCEEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cccEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 3678899999999999995 445677764
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.57 E-value=2.5 Score=48.10 Aligned_cols=202 Identities=18% Similarity=0.213 Sum_probs=124.5
Q ss_pred CcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCe
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (693)
Q Consensus 467 sp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~ 545 (693)
+....++-.||.. ++.+..++.+.++.. .++. ............+.-..+--||. -++.+..+..+.+|+.....
T Consensus 161 sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 161 SVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ceEEEEEcCCCCe-EEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC
Confidence 4455788889988 776667776666664 2221 00011111122234444556776 45666677888888872222
Q ss_pred eeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEE
Q 005498 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (693)
Q Consensus 546 ~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIv 625 (693)
.-...+. .....+...+|+-+| .-|+.++.++.+++|+-.+|+....++.+ ..++...+++.||. -|+
T Consensus 237 ~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-----s~~is~~~f~~d~~-----~l~ 304 (456)
T KOG0266|consen 237 RNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH-----SDGISGLAFSPDGN-----LLV 304 (456)
T ss_pred eEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc-----CCceEEEEECCCCC-----EEE
Confidence 2212222 222334667899999 66777888999999998888776544433 34667788987753 566
Q ss_pred EEecCCeEEEEcCCCCcee---EEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCC
Q 005498 626 TTSFDGYLYLIDGPTSCAD---VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (693)
Q Consensus 626 v~s~dG~ly~~dG~~g~~~---~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~ 686 (693)
+++.+|.+.+++-..+... .+.-.+... .+...-+.-+|+. |++++.++.+..|.+...
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKY-LLSASLDRTLKLWDLRSG 366 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcE-EEEecCCCeEEEEEccCC
Confidence 7778999999987766522 222222231 3334457788875 777777889999888753
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.38 E-value=2.5 Score=46.11 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=84.1
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccccc
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ 511 (693)
..-++|+..+|+ |...+.--+ -+++.+.|.-||.+ |+.+.-.|.|.++. .+|...|........
T Consensus 86 D~AflW~~~~ge--~~~eltgHK----------DSVt~~~Fshdgtl-LATGdmsG~v~v~~~stg~~~~~~~~e~~d-- 150 (399)
T KOG0296|consen 86 DLAFLWDISTGE--FAGELTGHK----------DSVTCCSFSHDGTL-LATGDMSGKVLVFKVSTGGEQWKLDQEVED-- 150 (399)
T ss_pred ceEEEEEccCCc--ceeEecCCC----------CceEEEEEccCceE-EEecCCCccEEEEEcccCceEEEeecccCc--
Confidence 345777777777 333332111 26778888888842 33334578888888 567766654311111
Q ss_pred cceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCce
Q 005498 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK 591 (693)
Q Consensus 512 ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~ 591 (693)
+.+.-.-.-+ .-|++++.+|.+++|....+. -.+.+. ........|+|-.||+. ++.+..+|.+.+|+.++|.+
T Consensus 151 --ieWl~WHp~a-~illAG~~DGsvWmw~ip~~~-~~kv~~-Gh~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 151 --IEWLKWHPRA-HILLAGSTDGSVWMWQIPSQA-LCKVMS-GHNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred --eEEEEecccc-cEEEeecCCCcEEEEECCCcc-eeeEec-CCCCCcccccccCCCce-EEEEecCceEEEEecCCCce
Confidence 1111111111 126677788999999874432 222222 23445678999999877 66666799999999999977
Q ss_pred e
Q 005498 592 V 592 (693)
Q Consensus 592 ~ 592 (693)
+
T Consensus 225 ~ 225 (399)
T KOG0296|consen 225 L 225 (399)
T ss_pred e
Confidence 6
No 31
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.38 E-value=4.7 Score=45.83 Aligned_cols=195 Identities=14% Similarity=0.210 Sum_probs=102.0
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeec-ccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCee
Q 005498 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFP-LEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI 546 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~~~~~-~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~ 546 (693)
+..+-|-.+| |+|.+.++|.|+++...+....... ...+.+.+ +. +-+||. |+.+..+..+..|+.+=+.+
T Consensus 249 Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~-L~---~lr~Gt--llSGgKDRki~~Wd~~y~k~ 320 (626)
T KOG2106|consen 249 VLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFS-LC---MLRDGT--LLSGGKDRKIILWDDNYRKL 320 (626)
T ss_pred EEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEE-EE---EecCcc--EeecCccceEEecccccccc
Confidence 3344454555 7999999999999987665432211 22233322 22 234564 45566666777776433222
Q ss_pred eEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECC---------CCceeecceec-------------------
Q 005498 547 WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK---------DGSKVRPYPYR------------------- 598 (693)
Q Consensus 547 W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~---------~G~~~~~~~~~------------------- 598 (693)
-+..++.....--+++ -|+.||+|++....+..=.-. -|..+|.+...
T Consensus 321 r~~elPe~~G~iRtv~----e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 321 RETELPEQFGPIRTVA----EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccCchhcCCeeEEe----cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 2222221111111222 244556665543221110000 11112211000
Q ss_pred -----cCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEEe
Q 005498 599 -----THGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTT 673 (693)
Q Consensus 599 -----~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s 673 (693)
....+..|...+|+.. .+ .|++++..|.+++++........+.......+ +.-++-||.. |.+++
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhp-----sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls---~v~ysp~G~~-lAvgs 466 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHP-----SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLS---VVRYSPDGAF-LAVGS 466 (626)
T ss_pred CCceeEEEEecCceeEeeccC-----cc-eEEEeeccceEEEEecccceeEEEEecCCceE---EEEEcCCCCE-EEEec
Confidence 0011235666788854 23 68889999999999987755555544433334 2237778765 88899
Q ss_pred eCCcEEEEECC
Q 005498 674 MNGNVFCFSTP 684 (693)
Q Consensus 674 ~~G~v~~~~~~ 684 (693)
.++.+|+|...
T Consensus 467 ~d~~iyiy~Vs 477 (626)
T KOG2106|consen 467 HDNHIYIYRVS 477 (626)
T ss_pred CCCeEEEEEEC
Confidence 99999999863
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.92 E-value=6.4 Score=46.72 Aligned_cols=195 Identities=19% Similarity=0.272 Sum_probs=115.1
Q ss_pred cCcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCC
Q 005498 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGK 544 (693)
Q Consensus 466 ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~ 544 (693)
......++-.||. =|+.|+.+|++-+++. .|-=.-+|... ++.+.+.-+-..|.. |+..+-+|.|++|+...-
T Consensus 351 ~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteH----ts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 351 DRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEH----TSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccC----CCceEEEEEEecCCE-EEEeecCCeEEeeeeccc
Confidence 3566777777874 3555677889998884 45433344333 344556666666653 666778999999988655
Q ss_pred eeeEEeec-cccccCcEEEecCCCCCccEEEEccCC--cEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCC
Q 005498 545 GIWEQHLK-SLVTQGPSIGDVDGDGHSDVVVPTLSG--NIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (693)
Q Consensus 545 ~~W~~~~~-s~~~~~~~vgDlDGDG~~DIvv~s~~G--~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~ 621 (693)
..|..-.. .+...+.... |..-|||++.... .|++|.-++|+++.-..- + -.|+...-++-+|
T Consensus 425 rNfRTft~P~p~Qfscvav----D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--H---EgPVs~l~f~~~~----- 490 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAV----DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--H---EGPVSGLSFSPDG----- 490 (893)
T ss_pred ceeeeecCCCceeeeEEEE----cCCCCEEEeeccceEEEEEEEeecCeeeehhcC--C---CCcceeeEEcccc-----
Confidence 55543322 1211111223 3334677665322 688999899987632221 1 2344433344332
Q ss_pred eEEEEEecCCeEEEEc--CCCCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 622 LTIVTTSFDGYLYLID--GPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 622 lDIvv~s~dG~ly~~d--G~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.-|+.++.|..+.+++ .+.+..+++.+.. .++..-|-.||+ +|.|++.+|++..|....
T Consensus 491 ~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s----dvl~vsfrPdG~-elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSSSGTVETLEIRS----DVLAVSFRPDGK-ELAVATLDGQITFFDIKE 551 (893)
T ss_pred CeEEeccccceEEEEEeeccCceeeeEeecc----ceeEEEEcCCCC-eEEEEEecceEEEEEhhh
Confidence 2567777776655544 4445555654432 333333777886 699999999999998644
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.08 E-value=6.5 Score=38.61 Aligned_cols=213 Identities=19% Similarity=0.217 Sum_probs=113.3
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEeCC-Cceeeeecccccccc
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHH-GKIREKFPLEMAEIQ 511 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~~-G~~~~~~~~~~g~~~ 511 (693)
+.+.+|+..+++......... .......+..++ .-+++++.+|.+++++.. ++....+... .
T Consensus 31 g~i~i~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~----~ 93 (289)
T cd00200 31 GTIKVWDLETGELLRTLKGHT------------GPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGH----T 93 (289)
T ss_pred cEEEEEEeeCCCcEEEEecCC------------cceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccceEEEecc----C
Confidence 557777776665433322110 012234444555 346666668889998854 3333333211 1
Q ss_pred cceEEEeecCCCCeEEEEEcC-CCcEEEEecC-CCeeeEEeeccccccCcEEEecCCCCCccEEEEcc-CCcEEEEECCC
Q 005498 512 GAVVAADINDDGKIELVTTDT-HGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKD 588 (693)
Q Consensus 512 ss~~v~DlDgDG~~DLvv~~~-~G~v~~~~~~-G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~-~G~v~~l~~~~ 588 (693)
..+....+..++ .++++.. ++.+.+|+.. +....... .....+....++.++ .++++.. ++.++.|+...
T Consensus 94 ~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 94 SYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSPDG--TFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred CcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcCcC--CEEEEEcCCCcEEEEEccc
Confidence 234445556554 3444444 8889999874 44433322 111234445555553 3555544 88999999876
Q ss_pred CceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCc
Q 005498 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDL 667 (693)
Q Consensus 589 G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~l 667 (693)
++....+... ..++....+..++ ..+++++.+|.+++++-..+... .+..... .+....++.++.
T Consensus 167 ~~~~~~~~~~-----~~~i~~~~~~~~~-----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~- 232 (289)
T cd00200 167 GKCVATLTGH-----TGEVNSVAFSPDG-----EKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN---GVNSVAFSPDGY- 232 (289)
T ss_pred cccceeEecC-----ccccceEEECCCc-----CEEEEecCCCcEEEEECCCCceecchhhcCC---ceEEEEEcCCCc-
Confidence 6655433311 1244455565442 35777777899998886644322 2211111 222233666643
Q ss_pred cEEEEee-CCcEEEEECC
Q 005498 668 DLIVTTM-NGNVFCFSTP 684 (693)
Q Consensus 668 DLvv~s~-~G~v~~~~~~ 684 (693)
++++.. +|.+++|...
T Consensus 233 -~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 233 -LLASGSEDGTIRVWDLR 249 (289)
T ss_pred -EEEEEcCCCcEEEEEcC
Confidence 555544 9999999875
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.80 E-value=12 Score=42.59 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=99.8
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecC-CCe
Q 005498 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GKG 545 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~-G~~ 545 (693)
+..++|+.+| .-|+.++.++.+.+++ .+|+....+... ...+...+++.||.. |+.++.++.+.+|+.. |..
T Consensus 249 v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----s~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 249 VTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH----SDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred eEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc----CCceEEEEECCCCCE-EEEcCCCccEEEEECCCCce
Confidence 4678899999 7778788889999998 456665554433 235778899999975 6666789999999884 442
Q ss_pred eeEEeecccccc-CcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEE
Q 005498 546 IWEQHLKSLVTQ-GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (693)
Q Consensus 546 ~W~~~~~s~~~~-~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDI 624 (693)
.=...+...... .+...-+.-+|+. ++++..++.+..|+-..+.....+....... .......+ ..++.-+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~i 394 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKLWDLRSGKSVGTYTGHSNLV--RCIFSPTL-----STGGKLI 394 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcE-EEEecCCCeEEEEEccCCcceeeecccCCcc--eeEecccc-----cCCCCeE
Confidence 200111111111 3455666666655 5555566677787776676554444333320 11111111 1244678
Q ss_pred EEEecCCeEEEEcCCCCc
Q 005498 625 VTTSFDGYLYLIDGPTSC 642 (693)
Q Consensus 625 vv~s~dG~ly~~dG~~g~ 642 (693)
+++..++.+++++-.++.
T Consensus 395 ~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 395 YSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred EEEeCCceEEEEeCCccc
Confidence 889999999999866543
No 35
>PTZ00420 coronin; Provisional
Probab=93.78 E-value=18 Score=42.63 Aligned_cols=206 Identities=11% Similarity=0.095 Sum_probs=109.8
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCC-Cce-eee--eccc-ccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-
Q 005498 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHH-GKI-REK--FPLE-MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA- 541 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~G~Lyv~~~~-G~~-~~~--~~~~-~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~- 541 (693)
+..+.++.+...-|+.++.++.+.+++.. +.. ... .+.. .......+....++.++..-|+.++.++.+.+|+.
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 44455655432335566778888888842 321 110 0110 11122345566677777655566778899999987
Q ss_pred CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCC
Q 005498 542 EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (693)
Q Consensus 542 ~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~ 621 (693)
++...+.... ...+....++.||.. |+.++.++.+.+|+..+|..+..+..+........+.+..+.+|+
T Consensus 157 tg~~~~~i~~----~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~----- 226 (568)
T PTZ00420 157 NEKRAFQINM----PKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD----- 226 (568)
T ss_pred CCcEEEEEec----CCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC-----
Confidence 4555444321 123455667788864 444556789999999888776544433222112223333443332
Q ss_pred eEEEEEecCC----eEEEEcCCC--CceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 622 LTIVTTSFDG----YLYLIDGPT--SCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 622 lDIvv~s~dG----~ly~~dG~~--g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
--|++++.++ .+.+++-.. .....+.+...........| ..+|.+ ++++..++.+++|....
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D-~~tg~l-~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD-ESTGLI-YLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee-CCCCCE-EEEEECCCeEEEEEccC
Confidence 1255555443 577777553 22223333322222111222 223543 66677899999998743
No 36
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=93.57 E-value=3.8 Score=43.20 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=42.2
Q ss_pred eEEEEEecCCeEEEEcCCCCce-eEEecCCcceeeEEEEeec-CCCCccEEEEeeCCcEEEEE
Q 005498 622 LTIVTTSFDGYLYLIDGPTSCA-DVVDIGETSYSMVLADNVD-GGDDLDLIVTTMNGNVFCFS 682 (693)
Q Consensus 622 lDIvv~s~dG~ly~~dG~~g~~-~~i~~g~~~~s~v~~~DlD-GDG~lDLvv~s~~G~v~~~~ 682 (693)
.=+|+++++|.+|+++...-.. .++.+...+....+.+-+| .|.+ |+|++.+|.||.++
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyR--I~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYR--IVVACRDGKIYTIR 256 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceE--EEEEeCCCEEEEEe
Confidence 4478899999999999664332 2455554444444566676 7776 99999999999875
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.39 E-value=11 Score=39.18 Aligned_cols=178 Identities=17% Similarity=0.263 Sum_probs=102.3
Q ss_pred EeeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEE
Q 005498 484 GTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIG 562 (693)
Q Consensus 484 g~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vg 562 (693)
++.+..+++++ ++|+...+|.... +++-..-||.+-. -++.++.+..+.+|+-.....-..++.......+...
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~----aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHL----AQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred CCCCceEEEEEcccCeeeeeccccc----ceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 33445788888 7899877665443 3445556665532 3445556777888865322111122222233345556
Q ss_pred ecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc
Q 005498 563 DVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC 642 (693)
Q Consensus 563 DlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~ 642 (693)
|++ ..+|+.++.+|.+..|+-..|++. ...+..|+...-+..||. =.++++.++.+.+++..+|.
T Consensus 152 ~v~---~heIvaGS~DGtvRtydiR~G~l~-------sDy~g~pit~vs~s~d~n-----c~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 152 DVA---EHEIVAGSVDGTVRTYDIRKGTLS-------SDYFGHPITSVSFSKDGN-----CSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred Eec---ccEEEeeccCCcEEEEEeecceee-------hhhcCCcceeEEecCCCC-----EEEEeeccceeeecccchhH
Confidence 664 467999999999999998888654 223456677777766543 34556678888888877765
Q ss_pred eeEEecCC--cceeeEEEEeecCCCCccEEEEeeCCcEEEEECC
Q 005498 643 ADVVDIGE--TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (693)
Q Consensus 643 ~~~i~~g~--~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~ 684 (693)
....-.|- ..|-.-.. |+.. ..-++-++.+|.||.|.+-
T Consensus 217 lL~sYkGhkn~eykldc~--l~qs-dthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 217 LLKSYKGHKNMEYKLDCC--LNQS-DTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred HHHHhcccccceeeeeee--eccc-ceeEEeccCCceEEEEEec
Confidence 43211121 12211111 1111 1124445789999999863
No 38
>PTZ00421 coronin; Provisional
Probab=93.25 E-value=20 Score=41.50 Aligned_cols=201 Identities=17% Similarity=0.234 Sum_probs=102.9
Q ss_pred cEEEecCC-CCCccEEEEeeCCeEEEEeC-CCceeee--eccc-ccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-
Q 005498 468 PTVVDLDG-DGNLDILVGTSFGLFYVLDH-HGKIREK--FPLE-MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA- 541 (693)
Q Consensus 468 p~v~DlDG-DG~~DIvvg~~~G~Lyv~~~-~G~~~~~--~~~~-~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~- 541 (693)
+..+.++. |+. -|+.++.++.|.+|+. ++..... -++. .......+....+..++..-|+.+..++.+.+|+.
T Consensus 78 V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 78 IIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred EEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 34455554 443 3566677888988884 3321110 0111 11122345566677665445777788899999987
Q ss_pred CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCC
Q 005498 542 EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (693)
Q Consensus 542 ~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~ 621 (693)
++...-... .....+....++-||.. |+.++.++.+.+|+..+|+.+..+....... ...+. +..+ +.
T Consensus 157 tg~~~~~l~---~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~-~~~~~---w~~~----~~ 224 (493)
T PTZ00421 157 RGKAVEVIK---CHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRDGTIVSSVEAHASAK-SQRCL---WAKR----KD 224 (493)
T ss_pred CCeEEEEEc---CCCCceEEEEEECCCCE-EEEecCCCEEEEEECCCCcEEEEEecCCCCc-ceEEE---EcCC----CC
Confidence 343322211 11223444566677753 6666778999999988887664333221111 11111 1111 11
Q ss_pred eEEEEEe----cCCeEEEEcCCCCc--eeEEecCCcceeeEEEEeecCCCCccEEEEe-eCCcEEEEECCC
Q 005498 622 LTIVTTS----FDGYLYLIDGPTSC--ADVVDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (693)
Q Consensus 622 lDIvv~s----~dG~ly~~dG~~g~--~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s-~~G~v~~~~~~~ 685 (693)
. |++.. .++.+.+++-.... ...+...... ....--++.||.. |+++. .+|.|.+|.+..
T Consensus 225 ~-ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 225 L-IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--ALFIPFFDEDTNL-LYIGSKGEGNIRCFELMN 291 (493)
T ss_pred e-EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--ceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeC
Confidence 2 33322 35778888755322 1122222111 1112226777764 44444 589999998753
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=92.45 E-value=22 Score=40.25 Aligned_cols=190 Identities=16% Similarity=0.214 Sum_probs=110.1
Q ss_pred EEecCCCCCccEEEEeeCCeEEEEeCCCc-eeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecC-CC---
Q 005498 470 VVDLDGDGNLDILVGTSFGLFYVLDHHGK-IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GK--- 544 (693)
Q Consensus 470 v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~-~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~-G~--- 544 (693)
..|++--+..+++....+|.|+++.-+++ +..++. | ....+.+.-+|--|.+ |..++.++.+.+|... +.
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~---G-H~g~V~alk~n~tg~L-LaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI---G-HHGEVNALKWNPTGSL-LASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecCCCcceeee---c-ccCceEEEEECCCCce-EEEecCCCeeEeeecCCCcchh
Confidence 45666566677888888999999986654 222221 2 4456777788877754 6667778888888742 11
Q ss_pred -------eeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCC
Q 005498 545 -------GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGE 617 (693)
Q Consensus 545 -------~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~ 617 (693)
.+++.... +..+ ++-|-.-..-++.+..++.+.+|+-..|..+..+.. -..||....+-.+|
T Consensus 396 ~l~~Hskei~t~~ws---p~g~--v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-----H~~pVysvafS~~g- 464 (524)
T KOG0273|consen 396 DLQAHSKEIYTIKWS---PTGP--VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-----HQEPVYSVAFSPNG- 464 (524)
T ss_pred hhhhhccceeeEeec---CCCC--ccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-----CCCceEEEEecCCC-
Confidence 11111111 1111 111111112255556788899999888877643322 13577777776544
Q ss_pred CCCCeEEEEEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEEC
Q 005498 618 KSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 618 ~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
--+..++.+|.|.++.-+.+..-.-..+......+ . .+-+|. -|.++..+|.+.++.+
T Consensus 465 ----~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel-~--Wn~~G~-kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 465 ----RYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL-C--WNAAGD-KLGACASDGSVCVLDL 522 (524)
T ss_pred ----cEEEecCCCCeeEeccccchheeEeecCCCeEEEE-E--EcCCCC-EEEEEecCCCceEEEe
Confidence 35777888998888876665543322232222211 1 556662 3666677888877764
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.08 E-value=36 Score=41.56 Aligned_cols=198 Identities=13% Similarity=0.131 Sum_probs=104.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCcee----eeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecC-
Q 005498 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIR----EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE- 542 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~----~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~- 542 (693)
+..+.++.||.. ++.++.++.|.+|+...... ...+...-.....+....++.....-|+.++.+|.+.+|+..
T Consensus 486 V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCE-EEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 456678888753 45566788888887432110 011111000111223333443323347778889999999874
Q ss_pred CCeeeEEeeccccccCcEEEecCC-CCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCC
Q 005498 543 GKGIWEQHLKSLVTQGPSIGDVDG-DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (693)
Q Consensus 543 G~~~W~~~~~s~~~~~~~vgDlDG-DG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~ 621 (693)
+....... .....+.-.+++- ||. -|+.++.++.+.+|+-.++..+..+.. . ..+....+.. ..+
T Consensus 565 ~~~~~~~~---~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~----~~v~~v~~~~----~~g 630 (793)
T PLN00181 565 SQLVTEMK---EHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGTIKT--K----ANICCVQFPS----ESG 630 (793)
T ss_pred CeEEEEec---CCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEec--C----CCeEEEEEeC----CCC
Confidence 43333221 1112334455552 332 255666788999999877765433321 1 2333444421 123
Q ss_pred eEEEEEecCCeEEEEcCCCCce--eEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 622 LTIVTTSFDGYLYLIDGPTSCA--DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 622 lDIvv~s~dG~ly~~dG~~g~~--~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.-+++++.+|.+++++-..... ..+.-.......+ .+. ++. -|+.++.++.+.+|....
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v---~f~-~~~-~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV---RFV-DSS-TLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE---EEe-CCC-EEEEEECCCEEEEEeCCC
Confidence 4578888999999998654431 1111111122222 233 333 377788899999998753
No 41
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=91.74 E-value=7.9 Score=43.74 Aligned_cols=217 Identities=17% Similarity=0.225 Sum_probs=113.5
Q ss_pred ccceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccc
Q 005498 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (693)
Q Consensus 431 ~~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~ 509 (693)
.+..+-.||..+|+.+-..+++ ..|.++-+.-|+...+++|..+++|..++ ..|+++..+....+.
T Consensus 278 fD~~lKlwDtETG~~~~~f~~~-------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHLD-------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred cceeeeeeccccceEEEEEecC-------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 4567888899999887766543 24668888889888899999999999998 578877666555443
Q ss_pred cccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEE-ccCCcEEEEECCC
Q 005498 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVP-TLSGNIYVLSGKD 588 (693)
Q Consensus 510 ~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~-s~~G~v~~l~~~~ 588 (693)
+. .+.+.| +|+. .|..+.++.+.+|+..-....+.........-+.++=-=. | -.+++ +.+..+++|...
T Consensus 345 i~-~i~F~~---~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~-~--~~~~aQs~dN~i~ifs~~- 415 (503)
T KOG0282|consen 345 IL-DITFVD---EGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN-G--KWFAAQSMDNYIAIFSTV- 415 (503)
T ss_pred ee-eeEEcc---CCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC-C--CeehhhccCceEEEEecc-
Confidence 32 344443 3443 4555566778777663222111111000000111110000 0 11222 223455555522
Q ss_pred Cceeecceecc----CC-ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeec
Q 005498 589 GSKVRPYPYRT----HG-RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVD 662 (693)
Q Consensus 589 G~~~~~~~~~~----~g-~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlD 662 (693)
+.++... .| ....-..-.++..||. -|+.++.+|.+++++-++.... .+...+ .++..++.=
T Consensus 416 ----~~~r~nkkK~feGh~vaGys~~v~fSpDG~-----~l~SGdsdG~v~~wdwkt~kl~~~lkah~---~~ci~v~wH 483 (503)
T KOG0282|consen 416 ----PPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-----TLCSGDSDGKVNFWDWKTTKLVSKLKAHD---QPCIGVDWH 483 (503)
T ss_pred ----cccccCHhhhhcceeccCceeeEEEcCCCC-----eEEeecCCccEEEeechhhhhhhccccCC---cceEEEEec
Confidence 1121111 11 1222334567766653 5788899999999986643211 222121 122222222
Q ss_pred CCCCccEEEEeeCCcEEEE
Q 005498 663 GGDDLDLIVTTMNGNVFCF 681 (693)
Q Consensus 663 GDG~lDLvv~s~~G~v~~~ 681 (693)
---..-++.+.-+|.|.+|
T Consensus 484 P~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 484 PVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred CCCcceeEecccCceeEec
Confidence 2222235556677878776
No 42
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=91.40 E-value=14 Score=41.75 Aligned_cols=151 Identities=17% Similarity=0.268 Sum_probs=94.5
Q ss_pred cCcEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCC
Q 005498 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGK 544 (693)
Q Consensus 466 ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~ 544 (693)
-.++..|+|+||. .|+.+..+|.+.+++.+|.....+... -..+...-.|++|.. |+.++.++...+|+. .|.
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~~tl~~H----kgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLISTLGQH----KGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCchhhhhhhcc----CCceEEEEEcCCCCE-EEeccCCccEEEEeccCce
Confidence 3578899999994 677788899999999999876544332 234566777888864 667778888888887 443
Q ss_pred eeeEEee--ccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCe
Q 005498 545 GIWEQHL--KSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGL 622 (693)
Q Consensus 545 ~~W~~~~--~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~l 622 (693)
|..++ .+...-.+.+. +...++....+|.++++.-..-.++..+. . -..++.+.-+|. .+.
T Consensus 310 --~~q~f~~~s~~~lDVdW~-----~~~~F~ts~td~~i~V~kv~~~~P~~t~~--G---H~g~V~alk~n~-----tg~ 372 (524)
T KOG0273|consen 310 --VKQQFEFHSAPALDVDWQ-----SNDEFATSSTDGCIHVCKVGEDRPVKTFI--G---HHGEVNALKWNP-----TGS 372 (524)
T ss_pred --EEEeeeeccCCccceEEe-----cCceEeecCCCceEEEEEecCCCcceeee--c---ccCceEEEEECC-----CCc
Confidence 33332 22221122222 33456777778888888753222221111 1 245666677753 335
Q ss_pred EEEEEecCCeEEEEcCC
Q 005498 623 TIVTTSFDGYLYLIDGP 639 (693)
Q Consensus 623 DIvv~s~dG~ly~~dG~ 639 (693)
-|...+.|+.+-++.+.
T Consensus 373 LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMG 389 (524)
T ss_pred eEEEecCCCeeEeeecC
Confidence 56777788988888733
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.60 E-value=49 Score=40.38 Aligned_cols=223 Identities=12% Similarity=0.075 Sum_probs=109.2
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCC-CCCccEEEEeeCCeEEEEeC-CCceeeeecccccc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDG-DGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAE 509 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDG-DG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~g~ 509 (693)
++.+.+|+..+++........ -..+..+++.. ||. -|+.++.++.+.+++- ++.....+..
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H------------~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---- 616 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEH------------EKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGTIKT---- 616 (793)
T ss_pred CCeEEEEECCCCeEEEEecCC------------CCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEec----
Confidence 455666666655543332111 01234455553 332 3555667888998884 4544322211
Q ss_pred cccceEEEeec-CCCCeEEEEEcCCCcEEEEecC-CCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECC
Q 005498 510 IQGAVVAADIN-DDGKIELVTTDTHGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (693)
Q Consensus 510 ~~ss~~v~DlD-gDG~~DLvv~~~~G~v~~~~~~-G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~ 587 (693)
...+....+. .+|. -|++++.+|.+++|+.. +...... +. .....+....+. |+. -|+.++.++.+.+|+..
T Consensus 617 -~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~~~~~~~-~~-~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 617 -KANICCVQFPSESGR-SLAFGSADHKVYYYDLRNPKLPLCT-MI-GHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLS 690 (793)
T ss_pred -CCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCCccceE-ec-CCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCC
Confidence 1123444453 3443 47788889999999873 3211111 11 111122223332 332 36667778888888865
Q ss_pred CCceee-cceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecC----------Ccceee
Q 005498 588 DGSKVR-PYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIG----------ETSYSM 655 (693)
Q Consensus 588 ~G~~~~-~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g----------~~~~s~ 655 (693)
.+.... ..+..........+....++.++ .-|++++.++.+++++....... ...+. ......
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-----~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSD-----GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCC-----CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 331000 00111100111223333343321 35778889999998875432111 11100 000112
Q ss_pred EEEEeecCCCCccEEEEeeCCcEEEEEC
Q 005498 656 VLADNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 656 v~~~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
+....+..+|.. |++++.+|.+.+|+.
T Consensus 766 V~~v~ws~~~~~-lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSST-LVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCe-EEEecCCCcEEEEec
Confidence 223346777765 778888999999964
No 44
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=90.41 E-value=2.6 Score=46.25 Aligned_cols=93 Identities=28% Similarity=0.336 Sum_probs=50.4
Q ss_pred cccCcEEEeecCCCCCcEEEEeeccCcceeecCCCCCccccceeccccccceEEEEECCC-CceEEEeeccCCcCccccc
Q 005498 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDT-KQVKWTTDLDLSTDNASFR 461 (693)
Q Consensus 383 i~sspaiaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~idi~~~~~G~l~~fd~~t-G~i~W~~~l~l~~~~~~~~ 461 (693)
.++.|+|+-++ +|+-=+|++..|.... ...+ .-...|+++++.+ |...|.......
T Consensus 147 t~s~P~I~~~~-~g~w~~i~g~Gy~~~~--~~~~-------------~~~~~lyi~d~~t~G~l~~~i~~~~~------- 203 (335)
T PF05567_consen 147 TWSKPQIAKVK-NGKWVVIFGSGYNSDD--VDSS-------------SGGAALYILDADTTGALIKKIDVPGG------- 203 (335)
T ss_dssp --S--EEEEET-TSSEEEEEE--BS-TT----------------------EEEEEEETTT---EEEEEEE--S-------
T ss_pred cccCCEEEEcc-CCcEEEEEccCCCCCc--cccc-------------CCCcEEEEEECCCCCceEEEEecCCC-------
Confidence 45788888886 6665566655432110 0000 0135699999999 999887654322
Q ss_pred cccccCcEEEecCCCCCccEEEE-eeCCeEEEEeCCCc
Q 005498 462 AYIYSSPTVVDLDGDGNLDILVG-TSFGLFYVLDHHGK 498 (693)
Q Consensus 462 ~~~~ssp~v~DlDGDG~~DIvvg-~~~G~Lyv~~~~G~ 498 (693)
....+.|.++|.|+||..|.+.+ ...|+||-++-.+.
T Consensus 204 ~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~~ 241 (335)
T PF05567_consen 204 SGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSSA 241 (335)
T ss_dssp TT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--TT
T ss_pred CccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCCC
Confidence 11456789999999999996655 56789998885543
No 45
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=90.36 E-value=7.3 Score=45.51 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=45.1
Q ss_pred CcEEEEECCCCceeecceeccCC----ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce
Q 005498 579 GNIYVLSGKDGSKVRPYPYRTHG----RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA 643 (693)
Q Consensus 579 G~v~~l~~~~G~~~~~~~~~~~g----~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~ 643 (693)
..+.+++..+|+..|.+....+. ...+.+.+.|+-.||. .-.-++..+.+|.+|+++..+|..
T Consensus 426 ssivAlD~~TG~~kW~yQtvhhDlWDmDvp~qp~L~D~~~DG~--~vpalv~ptk~G~~YVlDRrtGe~ 492 (773)
T COG4993 426 SSIVALDATTGKLKWVYQTVHHDLWDMDVPAQPTLLDITKDGK--VVPALVHPTKNGFIYVLDRRTGEL 492 (773)
T ss_pred ceeEEecCCCcceeeeeeccCcchhcccCCCCceEEEeecCCc--EeeeeecccccCcEEEEEcCCCcc
Confidence 36888998899998765533322 2356778999987754 334566777899999999887754
No 46
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.69 E-value=14 Score=41.59 Aligned_cols=189 Identities=13% Similarity=0.172 Sum_probs=101.1
Q ss_pred ccEEEEeeCCeEEEEeCCCceeeeec-ccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccc
Q 005498 479 LDILVGTSFGLFYVLDHHGKIREKFP-LEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVT 556 (693)
Q Consensus 479 ~DIvvg~~~G~Lyv~~~~G~~~~~~~-~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~ 556 (693)
+=+++++.++.+.+|.-+|+...... +..- -..+..+-|-.+|..-|++++....++.|+. .++..--.+..+.--
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~ 303 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE 303 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc
Confidence 44667777888888888887543211 1110 1122333344478877888877778888877 333221111111111
Q ss_pred cCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEE
Q 005498 557 QGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLI 636 (693)
Q Consensus 557 ~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~ 636 (693)
..+.-.-+--|+. =|++....|.|+++..+++..+..+.+.. .+.. + -+..|| -.|++.+.+|.||++
T Consensus 304 ~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG--~v~~-~---~fsSds-----k~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 304 KSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEG--VVSD-F---TFSSDS-----KELLASGGTGEVYVW 371 (514)
T ss_pred chhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeecc--EEee-E---EEecCC-----cEEEEEcCCceEEEE
Confidence 1122222233443 25555668999999988888776555432 2222 1 122332 467777788999999
Q ss_pred cCCC-CceeEEecCCccee-eEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 637 DGPT-SCADVVDIGETSYS-MVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 637 dG~~-g~~~~i~~g~~~~s-~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
+-.. .+..++.-.+.... ..+.. +|++ =|.+++..|-|.+|..++
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S-~ng~---ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCIS-LNGS---YLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeec-CCCc---eEEeccCcceEEEeccch
Confidence 7443 34433322222222 22222 5555 155667889899988544
No 47
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.24 E-value=23 Score=41.82 Aligned_cols=183 Identities=19% Similarity=0.280 Sum_probs=100.4
Q ss_pred CcEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCe-
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG- 545 (693)
Q Consensus 467 sp~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~- 545 (693)
.+...+++.++. +|-++-+..+.++.. |.....++-+....+ ++.=+..+ .++.++.+..+..|.+ |+.
T Consensus 103 nVC~ls~~~~~~--~iSgSWD~TakvW~~-~~l~~~l~gH~asVW---Av~~l~e~---~~vTgsaDKtIklWk~-~~~l 172 (745)
T KOG0301|consen 103 NVCSLSIGEDGT--LISGSWDSTAKVWRI-GELVYSLQGHTASVW---AVASLPEN---TYVTGSADKTIKLWKG-GTLL 172 (745)
T ss_pred ceeeeecCCcCc--eEecccccceEEecc-hhhhcccCCcchhee---eeeecCCC---cEEeccCcceeeeccC-Cchh
Confidence 466777777776 565554554444432 111111111111122 33334332 5777788888888876 332
Q ss_pred -eeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEE
Q 005498 546 -IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (693)
Q Consensus 546 -~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDI 624 (693)
.|..+. ....++++.| ...++-++.+|.|..|.- +|..+. ....+.. -+...+.-. ..-+|
T Consensus 173 ~tf~gHt--D~VRgL~vl~-----~~~flScsNDg~Ir~w~~-~ge~l~--~~~ghtn---~vYsis~~~-----~~~~I 234 (745)
T KOG0301|consen 173 KTFSGHT--DCVRGLAVLD-----DSHFLSCSNDGSIRLWDL-DGEVLL--EMHGHTN---FVYSISMAL-----SDGLI 234 (745)
T ss_pred hhhccch--hheeeeEEec-----CCCeEeecCCceEEEEec-cCceee--eeeccce---EEEEEEecC-----CCCeE
Confidence 233322 2233444442 224677777888888886 576552 2222222 222222111 12458
Q ss_pred EEEecCCeEEEEcCCCCceeEEecCC-cceeeEEEEeecCCCCccEEEEeeCCcEEEEECC
Q 005498 625 VTTSFDGYLYLIDGPTSCADVVDIGE-TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (693)
Q Consensus 625 vv~s~dG~ly~~dG~~g~~~~i~~g~-~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~ 684 (693)
+....|+.+.+++.. -+.+.|.... +.|+.-+. .| | ||+++..+|.|++|...
T Consensus 235 vs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L--~N--g--DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVL--LN--G--DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCCceEEEeecC-ceEEEEecCccceEEEEEe--eC--C--CEEEeccCceEEEEEec
Confidence 888899999888765 5666776655 44552222 12 2 59999999999999864
No 48
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.08 E-value=25 Score=39.74 Aligned_cols=192 Identities=16% Similarity=0.245 Sum_probs=105.7
Q ss_pred CCCCCccEEEE-eeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecC----CCeee
Q 005498 474 DGDGNLDILVG-TSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE----GKGIW 547 (693)
Q Consensus 474 DGDG~~DIvvg-~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~----G~~~W 547 (693)
+++|. ++++ +-.|.||++. .+|..+..+...+ .++...-|-+||.. |+.++.+|.|.+|... .....
T Consensus 90 ~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHY----Q~ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 90 SNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHY----QSITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred CCCce--EEEeecccCcEEEEEeccccHHHHHHhhc----cceeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCC
Confidence 44553 3444 4788999888 7888775543333 34555556677764 7777788988888541 11111
Q ss_pred E-EeeccccccCcEEEecC-CCC--CccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeE
Q 005498 548 E-QHLKSLVTQGPSIGDVD-GDG--HSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT 623 (693)
Q Consensus 548 ~-~~~~s~~~~~~~vgDlD-GDG--~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lD 623 (693)
. .+......+.+.+.||- +-| ..-|+-++.+..+.+|+-..|.++..+.+ ..++...-+|. ..--
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------p~si~av~lDp-----ae~~ 231 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------PSSIKAVALDP-----AERV 231 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec------CCcceeEEEcc-----cccE
Confidence 0 01112233455566542 222 23355555566777888777876633222 23333333432 3345
Q ss_pred EEEEecCCeEEEEc--CCCCcee--------------EEecCCcceeeE-EEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 624 IVTTSFDGYLYLID--GPTSCAD--------------VVDIGETSYSMV-LADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 624 Ivv~s~dG~ly~~d--G~~g~~~--------------~i~~g~~~~s~v-~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
+++++.+|.+|++. +..++.. ..-.|...-+.+ +++ ++-||.+ |+.+..+|++.+|...+
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa-is~Dgtl-LlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA-ISTDGTL-LLSGDEDGKVCVWDIYS 308 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE-EecCccE-EEeeCCCCCEEEEecch
Confidence 88899999888753 2221111 112222221111 233 7778876 77889999999998654
No 49
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=88.77 E-value=37 Score=40.05 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=98.6
Q ss_pred EEEEeeCCeEEEEeCCCcee-ee-ecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeecccccc
Q 005498 481 ILVGTSFGLFYVLDHHGKIR-EK-FPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQ 557 (693)
Q Consensus 481 Ivvg~~~G~Lyv~~~~G~~~-~~-~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~ 557 (693)
+.++..+|.|.+|+..-... .. .+........+++++ +| ..|+....+|.+.-|+. +++........+....
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~----e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW 114 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA----EG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW 114 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc----cC-CeEEeecCCceEEEEecccCceeEEecCCCccee
Confidence 55666677777776432211 11 111112233445555 11 24666666666666655 4555444433322222
Q ss_pred CcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 005498 558 GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (693)
Q Consensus 558 ~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~d 637 (693)
++++.+- ...+.|++.+|.++.+....+... +..... +..+.++..+++++| ..|+.++.+|.+.+++
T Consensus 115 siai~p~----~~~l~IgcddGvl~~~s~~p~~I~--~~r~l~-rq~sRvLslsw~~~~-----~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 115 SIAINPE----NTILAIGCDDGVLYDFSIGPDKIT--YKRSLM-RQKSRVLSLSWNPTG-----TKIAGGSIDGVIRIWD 182 (691)
T ss_pred EEEeCCc----cceEEeecCCceEEEEecCCceEE--EEeecc-cccceEEEEEecCCc-----cEEEecccCceEEEEE
Confidence 3333332 255777778887888876655544 222222 234567788887753 4689999999999999
Q ss_pred CCCCceeEE-ec-----CC--c--ceeeEEEEeecCCCCccEEEEeeCCcEEEEEC
Q 005498 638 GPTSCADVV-DI-----GE--T--SYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 638 G~~g~~~~i-~~-----g~--~--~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
+..+....+ .. .. . .|+.. +=.|+. |+.+...|.|-.|..
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~----~Lrd~t--I~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVL----FLRDST--IASGDSAGTVTFWDS 232 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEE----EeecCc--EEEecCCceEEEEcc
Confidence 887765431 11 11 1 12322 224443 566678888888864
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.57 E-value=35 Score=35.78 Aligned_cols=213 Identities=15% Similarity=0.229 Sum_probs=113.7
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEE-EeeCCeEEEEeCCCceeeeecccc-ccc
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILV-GTSFGLFYVLDHHGKIREKFPLEM-AEI 510 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvv-g~~~G~Lyv~~~~G~~~~~~~~~~-g~~ 510 (693)
..+.+||..+|++.-+..... ..+-.+-+|.+- -|++ ++.+..+.+++-.-.-. -|++. ...
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~------------aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~--ePiQildea 144 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHL------------AQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSF--EPIQILDEA 144 (307)
T ss_pred ceEEEEEcccCeeeeeccccc------------ceeeEEEecCcc--eEEEeccccceeEEEEcccCCC--Cccchhhhh
Confidence 458899999998743332211 122234444432 2333 34455677777432211 12322 222
Q ss_pred ccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCC
Q 005498 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (693)
Q Consensus 511 ~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G 589 (693)
.-.+.-.|++. -+|+.++.+|+++.|+. .|.. ....+ .+.+...-+-.||.- .+++.-++.+.+++..+|
T Consensus 145 ~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l-~sDy~----g~pit~vs~s~d~nc-~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 145 KDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL-SSDYF----GHPITSVSFSKDGNC-SLASSLDSTLRLLDKETG 215 (307)
T ss_pred cCceeEEEecc---cEEEeeccCCcEEEEEeeccee-ehhhc----CCcceeEEecCCCCE-EEEeeccceeeecccchh
Confidence 22344555553 58999999999999977 4543 22222 223333445556654 556667888999999999
Q ss_pred ceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCcc
Q 005498 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLD 668 (693)
Q Consensus 590 ~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lD 668 (693)
+++..+.-.....+- + =.-++ .....++.++++|.+|+++-...... .+ ...+.+.+-|++--...+
T Consensus 216 klL~sYkGhkn~eyk--l-dc~l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYK--L-DCCLN-----QSDTHVFSGSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred HHHHHhcccccceee--e-eeeec-----ccceeEEeccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCcc
Confidence 987655433221111 0 01121 12256778889999999976544321 11 122344455666655554
Q ss_pred EEEEeeCCcEEEEE
Q 005498 669 LIVTTMNGNVFCFS 682 (693)
Q Consensus 669 Lvv~s~~G~v~~~~ 682 (693)
=++....+..++|.
T Consensus 284 ~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 284 DFITATGHGDLFWY 297 (307)
T ss_pred ceeEecCCceecee
Confidence 44444455555554
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=88.06 E-value=6.8 Score=44.26 Aligned_cols=185 Identities=16% Similarity=0.187 Sum_probs=114.0
Q ss_pred EEeeCCeEEEEe--CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCc
Q 005498 483 VGTSFGLFYVLD--HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGP 559 (693)
Q Consensus 483 vg~~~G~Lyv~~--~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~ 559 (693)
-++.++.+++++ .++..+..|... ...+.-+-++.+|. -++.++.+..+..|+. +|......... ..+
T Consensus 232 S~gmD~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~f~~~----~~~ 302 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSRFHLD----KVP 302 (503)
T ss_pred ecCCCceEEEEEEecCcceehhhhcc----hhhhhhhhccccCC-eeeeeecceeeeeeccccceEEEEEecC----CCc
Confidence 344567777777 346655444322 11233344577775 4677778888989987 77766554432 223
Q ss_pred EEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCC
Q 005498 560 SIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGP 639 (693)
Q Consensus 560 ~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~ 639 (693)
...-+.-|+...++++..++.|..|+-++|+++..+...... ...+.+.+.+ -..|..+.++.+.+++-.
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~--i~~i~F~~~g--------~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA--ILDITFVDEG--------RRFISSSDDKSVRIWENR 372 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh--eeeeEEccCC--------ceEeeeccCccEEEEEcC
Confidence 455666777777888889999999999999877544433321 2334455442 346777777877777654
Q ss_pred CCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCCCC
Q 005498 640 TSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHH 688 (693)
Q Consensus 640 ~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~~~ 688 (693)
..-..........++++.+. +--+|.- ++..+++..+++|++..+|.
T Consensus 373 ~~v~ik~i~~~~~hsmP~~~-~~P~~~~-~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 373 IPVPIKNIADPEMHTMPCLT-LHPNGKW-FAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred CCccchhhcchhhccCccee-cCCCCCe-ehhhccCceEEEEecccccc
Confidence 43322222233455677665 5445442 45558888999999876654
No 52
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=87.92 E-value=36 Score=39.03 Aligned_cols=136 Identities=19% Similarity=0.304 Sum_probs=81.5
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCcccc
Q 005498 526 ELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMN 605 (693)
Q Consensus 526 DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s 605 (693)
.++.+..++.+..|+ +-++.|...+.. ....+||.--| -|++++..|..++++..+-..+ ..+.. ..
T Consensus 382 q~~T~gqdk~v~lW~-~~k~~wt~~~~d----~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv---~~~~d---~~ 448 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN-DHKLEWTKIIED----PAECADFHPSG--VVAVGTATGRWFVLDTETQDLV---TIHTD---NE 448 (626)
T ss_pred heeeccCcceEEEcc-CCceeEEEEecC----ceeEeeccCcc--eEEEeeccceEEEEecccceeE---EEEec---CC
Confidence 456666778888887 677889877643 23457777777 5778888999999887653333 22222 45
Q ss_pred ceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEE-eeCCcEEEE
Q 005498 606 QVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVT-TMNGNVFCF 681 (693)
Q Consensus 606 ~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~-s~~G~v~~~ 681 (693)
|+.+.-++.|| .-+.+++.++.+|+|.-..........+.-.-+.+..-|+--|+. .+++ +.+-.+..|
T Consensus 449 ~ls~v~ysp~G-----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~--~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 449 QLSVVRYSPDG-----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ--FLVSNSGDYEILYW 518 (626)
T ss_pred ceEEEEEcCCC-----CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc--eEEeccCceEEEEE
Confidence 66677776654 357889999988887533222221112211114444556766765 3444 333345555
No 53
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.78 E-value=34 Score=34.81 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=107.5
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEE-eeCCeEEEEeCC-Cceeeeeccccccc
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVG-TSFGLFYVLDHH-GKIREKFPLEMAEI 510 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg-~~~G~Lyv~~~~-G~~~~~~~~~~g~~ 510 (693)
+.+.+|+..+++........ ..+....+..||.. +++. ..++.+++++.. ++....++. +
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~--~-- 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSG-------------PDPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV--G-- 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCC-------------CCccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC--C--
Confidence 45778888877654322110 11334456677753 3333 346788888853 443333321 1
Q ss_pred ccceEEEeecCCCCeEEEEEcCCC-cEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEEc-cCCcEEEEECCC
Q 005498 511 QGAVVAADINDDGKIELVTTDTHG-NVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYVLSGKD 588 (693)
Q Consensus 511 ~ss~~v~DlDgDG~~DLvv~~~~G-~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s-~~G~v~~l~~~~ 588 (693)
..+...-+..||.. ++++..++ .+.+++........... ....+....+..||.. +++.+ .++.++.|+..+
T Consensus 115 -~~~~~~~~~~dg~~-l~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~-l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 115 -VEPEGMAVSPDGKI-VVNTSETTNMAHFIDTKTYEIVDNVL---VDQRPRFAEFTADGKE-LWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred -CCcceEEECCCCCE-EEEEecCCCeEEEEeCCCCeEEEEEE---cCCCccEEEECCCCCE-EEEEcCCCCEEEEEEcCc
Confidence 11223445667764 33343333 34455553222221111 1112333456667754 44443 478899999887
Q ss_pred CceeecceeccCCcc--ccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeE-EecCCcceeeEEEEeecCCC
Q 005498 589 GSKVRPYPYRTHGRV--MNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGD 665 (693)
Q Consensus 589 G~~~~~~~~~~~g~~--~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~-i~~g~~~~s~v~~~DlDGDG 665 (693)
++....+.....+.. ...+...-++.||. .=++....++.+++++..++.... +..+.... ...+..||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~g 260 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGK----TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVW----QLAFTPDE 260 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCC----EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcc----eEEECCCC
Confidence 876544433221110 00111122444332 222323345668888876554432 22232222 22477788
Q ss_pred CccEEEEe-eCCcEEEEECCC
Q 005498 666 DLDLIVTT-MNGNVFCFSTPA 685 (693)
Q Consensus 666 ~lDLvv~s-~~G~v~~~~~~~ 685 (693)
.. |+++. .+|.|.+|...+
T Consensus 261 ~~-l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 261 KY-LLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CE-EEEEcCCCCeEEEEECCC
Confidence 74 55553 579999998755
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=87.17 E-value=64 Score=37.27 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=109.5
Q ss_pred EEecCCCCCccEEEEeeCCeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeE
Q 005498 470 VVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWE 548 (693)
Q Consensus 470 v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~ 548 (693)
.+||-.--..=++.++.++.+-.|++.- ++|.........-+...-+..||.. ++.+..+|++++|++ +|...-+
T Consensus 152 s~~~KpsRPfRi~T~sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VRysPDG~~-Fat~gsDgki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 152 SVDFKPSRPFRIATGSDDNTVAFFEGPP---FKFKSSFREHSKFVNCVRYSPDGSR-FATAGSDGKIYIYDGKTGEKVGE 227 (603)
T ss_pred eeeccCCCceEEEeccCCCeEEEeeCCC---eeeeecccccccceeeEEECCCCCe-EEEecCCccEEEEcCCCccEEEE
Confidence 4455444444556566666666666432 1222221222223556667888864 555667899999988 6665543
Q ss_pred EeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEe
Q 005498 549 QHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS 628 (693)
Q Consensus 549 ~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s 628 (693)
..-......++-..=+--|+. -++.++.+-.+..|+-.+++.+..|+.... +..+.+-.=.-+ -.|++.+
T Consensus 228 l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~--v~dqqvG~lWqk-------d~lItVS 297 (603)
T KOG0318|consen 228 LEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGST--VEDQQVGCLWQK-------DHLITVS 297 (603)
T ss_pred ecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCc--hhceEEEEEEeC-------CeEEEEE
Confidence 321111111222222222332 255555566677777777887766665443 222222111112 2478888
Q ss_pred cCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCCC
Q 005498 629 FDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPH 687 (693)
Q Consensus 629 ~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~~ 687 (693)
..|.+-.++........+..|-. -+ +.+.=+..|| --|+-++++|.+.-|...+-+
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHn-K~-ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHN-KS-ITALTVSPDG-KTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred cCcEEEEecccCCChhheecccc-cc-eeEEEEcCCC-CEEEeeccCceEEEEecCCcc
Confidence 88998888766554333333321 11 1122367787 448888999999999876644
No 55
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=85.62 E-value=75 Score=37.66 Aligned_cols=193 Identities=11% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCCCCccEEEEeeCCeEEEEeCCCcee----------eeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-C
Q 005498 474 DGDGNLDILVGTSFGLFYVLDHHGKIR----------EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-E 542 (693)
Q Consensus 474 DGDG~~DIvvg~~~G~Lyv~~~~G~~~----------~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~ 542 (693)
..|+..+-++-...++|+-...+|... ...... +....++++.+.+ ..+.++..+|.++.+.. .
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~-gg~IWsiai~p~~----~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSN-GGAIWSIAINPEN----TILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCC-CcceeEEEeCCcc----ceEEeecCCceEEEEecCC
Confidence 445555555555555665555555533 111111 2233445555543 46777778886666655 5
Q ss_pred CCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccc-cceE---EEeccCCCCC
Q 005498 543 GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVM-NQVL---LVDLTKRGEK 618 (693)
Q Consensus 543 G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~-s~v~---l~DlDGDG~~ 618 (693)
+...+...+. .....+.-.+++.+|.. |+.++.+|.|.+|+.+.|..+........+.-. .+.. +.=+ .|+
T Consensus 142 ~~I~~~r~l~-rq~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~-- 216 (691)
T KOG2048|consen 142 DKITYKRSLM-RQKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDS-- 216 (691)
T ss_pred ceEEEEeecc-cccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecC--
Confidence 5566665543 22334555677777643 778888899999999888766411111111100 1211 1122 333
Q ss_pred CCCeEEEEEecCCeEEEEcCCCCceeEE-e-cCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 619 SKGLTIVTTSFDGYLYLIDGPTSCADVV-D-IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 619 dg~lDIvv~s~dG~ly~~dG~~g~~~~i-~-~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.|+.++..|.+-++++..+...+. . ......++. .+.++ .-++.+..++.+.-|+..+
T Consensus 217 ----tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La----v~~~~-d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 217 ----TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA----VADNE-DRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred ----cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE----EcCCC-CeEEEccCCCceEEEEecC
Confidence 388888999999999887654321 1 111122222 22222 2266777888888887543
No 56
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=85.62 E-value=14 Score=41.80 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=84.7
Q ss_pred CCeEEEEEcCCCcEEEEecCCCeee---EEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceecc
Q 005498 523 GKIELVTTDTHGNVAAWTAEGKGIW---EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRT 599 (693)
Q Consensus 523 G~~DLvv~~~~G~v~~~~~~G~~~W---~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~ 599 (693)
+.+-++++..++.+.+|..+|+..= ..++.........+. -+|..-|+.++..-.+|.|+-.++++..--+...
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~---p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g 300 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFA---PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG 300 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeec---CCCceEEEecccceEEEEeeccccccccccCCCC
Confidence 3455777778888988888876532 112222222223344 3677777777777788999887776543222111
Q ss_pred -CCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCccEEEEeeCCc
Q 005498 600 -HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGN 677 (693)
Q Consensus 600 -~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~ 677 (693)
....+... -+..|+ .-|++....|+++++...++... .+.+.+.... .=|..|| -.|++++..|.
T Consensus 301 ~e~~~~e~F---eVShd~-----~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~----~~fsSds-k~l~~~~~~Ge 367 (514)
T KOG2055|consen 301 VEEKSMERF---EVSHDS-----NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSD----FTFSSDS-KELLASGGTGE 367 (514)
T ss_pred cccchhhee---EecCCC-----CeEEEcccCceEEeehhhhhhhhheeeeccEEee----EEEecCC-cEEEEEcCCce
Confidence 11111111 111111 23556667789998887765422 3333322212 1255778 45888888999
Q ss_pred EEEEECCCC
Q 005498 678 VFCFSTPAP 686 (693)
Q Consensus 678 v~~~~~~~~ 686 (693)
||+|.++.+
T Consensus 368 V~v~nl~~~ 376 (514)
T KOG2055|consen 368 VYVWNLRQN 376 (514)
T ss_pred EEEEecCCc
Confidence 999998765
No 57
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=84.97 E-value=24 Score=40.27 Aligned_cols=166 Identities=10% Similarity=0.097 Sum_probs=85.8
Q ss_pred ccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCc
Q 005498 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (693)
Q Consensus 511 ~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~ 590 (693)
...+...|+|..-. =|..+...|.+.+.... ...-...+.-.....+...++----+.=|.+++.+|.|.+|+-..-.
T Consensus 121 ~stvt~v~YN~~De-yiAsvs~gGdiiih~~~-t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 121 QSTVTYVDYNNTDE-YIASVSDGGDIIIHGTK-TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred cceeEEEEecCCcc-eeEEeccCCcEEEEecc-cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence 35577788875321 12233334555443221 11111122222233344555555455557777889999999964333
Q ss_pred eeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce-eEEecCCcceeeEEEEeecCCCCccE
Q 005498 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA-DVVDIGETSYSMVLADNVDGGDDLDL 669 (693)
Q Consensus 591 ~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~-~~i~~g~~~~s~v~~~DlDGDG~lDL 669 (693)
.+..|...... -.+.+.+.-.|- .-|+....|-.+|+|+-..... ..+. .+.+++ ..+|-.+|.. |
T Consensus 199 p~~~~~~~HsA-P~~gicfspsne-------~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Pls---tvaf~~~G~~-L 265 (673)
T KOG4378|consen 199 PIFHASEAHSA-PCRGICFSPSNE-------ALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLS---TVAFSECGTY-L 265 (673)
T ss_pred cccchhhhccC-CcCcceecCCcc-------ceEEEecccceEEEeecccccccceee-ecCCcc---eeeecCCceE-E
Confidence 33222211110 011122222211 2244555677888888654332 2222 123333 3457778875 8
Q ss_pred EEEeeCCcEEEEECCCCCCccc
Q 005498 670 IVTTMNGNVFCFSTPAPHHPLK 691 (693)
Q Consensus 670 vv~s~~G~v~~~~~~~~~~p~k 691 (693)
++++..|.|+.|...+.-.|++
T Consensus 266 ~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 266 CAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred EeecCCceEEEEecccCCCCce
Confidence 8889999999999988877775
No 58
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=84.06 E-value=23 Score=42.72 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=67.5
Q ss_pred cEEEEeeCCeEEEEe-CCCceeeeeccccccccc--ceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeecccc
Q 005498 480 DILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQG--AVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLV 555 (693)
Q Consensus 480 DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~s--s~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~ 555 (693)
-|+++...|++.+++ .+|+.+.+|+.....+++ +.-+.|+ +.++..+|.+.+++. .++.+.+.+..-.
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDV-------VaiG~~~G~ViifNlK~dkil~sFk~d~g- 245 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDV-------VAIGLENGTVIIFNLKFDKILMSFKQDWG- 245 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceE-------EEEeccCceEEEEEcccCcEEEEEEcccc-
Confidence 478888899998888 688887766554322221 1122232 456667899999877 5666665554312
Q ss_pred ccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceee
Q 005498 556 TQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVR 593 (693)
Q Consensus 556 ~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~ 593 (693)
.+.-.-|--||.+=++.++..|.+..|+-..-+..+
T Consensus 246 --~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 246 --RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN 281 (910)
T ss_pred --ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee
Confidence 222233446899989999888999999976444443
No 59
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=80.91 E-value=68 Score=32.59 Aligned_cols=177 Identities=20% Similarity=0.210 Sum_probs=87.3
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeccccccc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEI 510 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~g~~ 510 (693)
++.+.+|+..+++........ ..+....++.||..=++.+..++.+++++. +|+....++.. .
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~-------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~- 73 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVG-------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--P- 73 (300)
T ss_pred CCEEEEEECCCCceEEEEECC-------------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--C-
Confidence 467888898887765443211 012234556677542233445678888884 45544333221 1
Q ss_pred ccceEEEeecCCCCeEEEEEcCCCcEEEEecCC-CeeeEEeeccccccCcEEEecCCCCCccEEEEccCC-cEEEEECCC
Q 005498 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTAEG-KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSG-NIYVLSGKD 588 (693)
Q Consensus 511 ~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G-~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G-~v~~l~~~~ 588 (693)
.+....+..||..-++....++.+.+|+... ......... ..+.-.-++.||.. ++++...+ .+++++..+
T Consensus 74 --~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~dg~~-l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 74 --DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----VEPEGMAVSPDGKI-VVNTSETTNMAHFIDTKT 146 (300)
T ss_pred --CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----CCcceEEECCCCCE-EEEEecCCCeEEEEeCCC
Confidence 1233456777764333334567888887743 222222111 11222345566654 44443333 355667655
Q ss_pred CceeecceeccCCccccceEEEeccCCCCCCCCeEEEEE-ecCCeEEEEcCCCCc
Q 005498 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTT-SFDGYLYLIDGPTSC 642 (693)
Q Consensus 589 G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~-s~dG~ly~~dG~~g~ 642 (693)
++........ ..+....++.||. -+++. ..+|.+++++-.++.
T Consensus 147 ~~~~~~~~~~------~~~~~~~~s~dg~-----~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 147 YEIVDNVLVD------QRPRFAEFTADGK-----ELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred CeEEEEEEcC------CCccEEEECCCCC-----EEEEEcCCCCEEEEEEcCcce
Confidence 5543222111 1112233443322 34333 357888888766553
No 60
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=79.58 E-value=60 Score=37.90 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=68.0
Q ss_pred ccEEEEeeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCC-----CeeeEEeec
Q 005498 479 LDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEG-----KGIWEQHLK 552 (693)
Q Consensus 479 ~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G-----~~~W~~~~~ 552 (693)
-||+++.....||-++ ..|.++..+....+ .+-++++|.-- --|+++..+|.|.+|+.-- ..-....+.
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~~~~~~----~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~ 220 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPFETDSG----ELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN 220 (703)
T ss_pred ccEEEeecCcceEEEEccccccccccccccc----cceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccC
Confidence 4788887777899888 57888766655432 34456665432 1245555689999998732 221222221
Q ss_pred c----ccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCce
Q 005498 553 S----LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK 591 (693)
Q Consensus 553 s----~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~ 591 (693)
+ ....+++..-|++|| +++.|++..|.+++|+...-++
T Consensus 221 s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred CCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc
Confidence 1 122346667788886 6799999999999999765543
No 61
>PTZ00420 coronin; Provisional
Probab=77.30 E-value=1.6e+02 Score=34.84 Aligned_cols=165 Identities=11% Similarity=0.089 Sum_probs=89.0
Q ss_pred ceEEEeecCCCCeEEEEEcCCCcEEEEecC-CCeee------EEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEE
Q 005498 513 AVVAADINDDGKIELVTTDTHGNVAAWTAE-GKGIW------EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLS 585 (693)
Q Consensus 513 s~~v~DlDgDG~~DLvv~~~~G~v~~~~~~-G~~~W------~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~ 585 (693)
.+....++.+...-|+.++.++.+.+|+.. +...- ...+. .....+....++-++..=++.++.++.+.+|+
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD 154 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 345555665422346777788999999863 22110 00111 11123444556666543334556788999999
Q ss_pred CCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcce--eeEEEEeec
Q 005498 586 GKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSY--SMVLADNVD 662 (693)
Q Consensus 586 ~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~--s~v~~~DlD 662 (693)
..++.....+. . ...+....++.||. -|++++.++.+.+++...+... .+....... ..+....+.
T Consensus 155 l~tg~~~~~i~--~----~~~V~SlswspdG~-----lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 155 IENEKRAFQIN--M----PKKLSSLKWNIKGN-----LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred CCCCcEEEEEe--c----CCcEEEEEECCCCC-----EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 88776553322 1 13455666765543 3555667889999997766433 222111211 122333455
Q ss_pred CCCCccEEEEeeCC----cEEEEECCCCCCcc
Q 005498 663 GGDDLDLIVTTMNG----NVFCFSTPAPHHPL 690 (693)
Q Consensus 663 GDG~lDLvv~s~~G----~v~~~~~~~~~~p~ 690 (693)
+|+.. |+.+..++ .+.+|.....-.|+
T Consensus 224 ~d~~~-IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 224 GDDNY-ILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred CCCCE-EEEEEcCCCCccEEEEEECCCCCCce
Confidence 66553 44444443 69999976544443
No 62
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.22 E-value=3.8 Score=30.09 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=23.1
Q ss_pred ceeEEEEecceeecCceEEeecCCCceeEEecCcceeEEEeeC
Q 005498 63 ELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEG 105 (693)
Q Consensus 63 ~~~w~~~~~ss~~atp~i~d~~~dg~~~i~v~~~~~y~~~l~g 105 (693)
+++|+.+++..++++|.++| |+ |+|.+....|-+|+=
T Consensus 2 ~~~W~~~~~~~~~~~~~v~~----g~--vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAVAG----GR--VYVGTGDGNLYALDA 38 (40)
T ss_dssp -EEEEEE-SS---S--EECT----SE--EEEE-TTSEEEEEET
T ss_pred ceeEEEECCCCcCcCCEEEC----CE--EEEEcCCCEEEEEeC
Confidence 57999999999999998863 43 888888888888763
No 63
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=75.96 E-value=13 Score=42.99 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=71.9
Q ss_pred CccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce-eEEe
Q 005498 569 HSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA-DVVD 647 (693)
Q Consensus 569 ~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~-~~i~ 647 (693)
.-||+++.....||.|+...|.++.++.... ..+-++++|. -+--|++++.+|.+-+++...... ..+.
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~-----~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-----GELNVVSINE-----EHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred CccEEEeecCcceEEEEcccccccccccccc-----ccceeeeecC-----ccceEEecccCceEEEecchhhhhheeee
Confidence 3478888777789999999999986665443 3345556642 233467778899999998664321 1222
Q ss_pred c--------CCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 648 I--------GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 648 ~--------g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
. +......|.+.-|.+|| +++.|++..|.+++|.+..
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred cccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc
Confidence 2 22222345555688885 7899999999999999855
No 64
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=75.78 E-value=1.4e+02 Score=33.41 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=89.0
Q ss_pred eeCCeEEEEeCCCc-eeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-C--------CCeeeEEeeccc
Q 005498 485 TSFGLFYVLDHHGK-IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-E--------GKGIWEQHLKSL 554 (693)
Q Consensus 485 ~~~G~Lyv~~~~G~-~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~--------G~~~W~~~~~s~ 554 (693)
+.+|.+.+++-.+. .... +...+.++...-.-|+|. |+.++.++.+.+|+. + |..-|...+.-.
T Consensus 224 skDg~vrIWd~~~~~~~~~----lsgHT~~VTCvrwGG~gl--iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTCVRT----LSGHTASVTCVRWGGEGL--IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred cCCCCEEEEEccCceEEEE----eccCccceEEEEEcCCce--EEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence 34667777775432 2211 122344566666667774 677778888988876 3 444576554311
Q ss_pred cccCcEEEecCC------------------------CCCccEEEEccCCcEEEEECCCCc-eeecceeccCCccccceEE
Q 005498 555 VTQGPSIGDVDG------------------------DGHSDVVVPTLSGNIYVLSGKDGS-KVRPYPYRTHGRVMNQVLL 609 (693)
Q Consensus 555 ~~~~~~vgDlDG------------------------DG~~DIvv~s~~G~v~~l~~~~G~-~~~~~~~~~~g~~~s~v~l 609 (693)
....+..+=|+- +.---+|-++.+..+++|++..-+ .+.. ...+. .-+.-
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r--mtgHq---~lVn~ 372 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR--MTGHQ---ALVNH 372 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh--hhchh---hheee
Confidence 111111121221 112236666667788888864222 1111 11111 12222
Q ss_pred EeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCccee-eEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 610 VDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYS-MVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 610 ~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s-~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
+-|..|+ .=|+.+++|.-+-+++|.+|... .++ +... ..-++ .-.|-++ |+-++.+..+-+|+...
T Consensus 373 V~fSPd~-----r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqva-wsaDsRL-lVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 373 VSFSPDG-----RYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVA-WSADSRL-LVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEECCCc-----cEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEE-eccCccE-EEEcCCCceEEEEEeee
Confidence 3344443 24667788888888898877532 111 1111 11122 3344442 44446677777776543
No 65
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=73.65 E-value=1.3e+02 Score=31.97 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=89.9
Q ss_pred CCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEec
Q 005498 487 FGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDV 564 (693)
Q Consensus 487 ~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDl 564 (693)
+-.|..+. .+|.=....+.. -+.+-..-+-.|++. |+++ ..-+++.|+. .+++.=...+. .....++..-|
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~----dsqVNrLeiTpdk~~-LAaa-~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF 91 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHP----DSQVNRLEITPDKKD-LAAA-GNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGF 91 (311)
T ss_pred cceeeeeehhcCeEEEEEecC----ccceeeEEEcCCcch-hhhc-cCCeeEEEEccCCCCCceeEEe-ccCCceEEEEE
Confidence 33455555 456543333222 123444455566653 3333 2345777765 33332111111 11123445556
Q ss_pred CCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCC-ce
Q 005498 565 DGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS-CA 643 (693)
Q Consensus 565 DGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g-~~ 643 (693)
--||+. ++.++.+|.+.+|+-+.-.... .+ ...+|+...=+.. ..-+|++++.+|.+++++-... |.
T Consensus 92 ~~dgrW-MyTgseDgt~kIWdlR~~~~qR--~~----~~~spVn~vvlhp-----nQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 92 QCDGRW-MYTGSEDGTVKIWDLRSLSCQR--NY----QHNSPVNTVVLHP-----NQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred eecCeE-EEecCCCceEEEEeccCcccch--hc----cCCCCcceEEecC-----CcceEEeecCCCcEEEEEccCCccc
Confidence 677776 6666677877777755421111 11 1123433222221 2368999999999999985433 44
Q ss_pred eEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 644 DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 644 ~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
..+ +.+.-.++-.+. +.-||.. |+.++..|+.|+|++-.
T Consensus 160 ~~l-iPe~~~~i~sl~-v~~dgsm-l~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 160 HEL-IPEDDTSIQSLT-VMPDGSM-LAAANNKGNCYVWRLLN 198 (311)
T ss_pred ccc-CCCCCcceeeEE-EcCCCcE-EEEecCCccEEEEEccC
Confidence 322 122211211122 6678875 67778899999999743
No 66
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=73.50 E-value=6.9 Score=28.68 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=23.8
Q ss_pred CCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECC
Q 005498 543 GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (693)
Q Consensus 543 G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~ 587 (693)
|+.+|+.........++++.| | -|++++.+|.+++++..
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~----g--~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAG----G--RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp S-EEEEEE-SS---S--EECT----S--EEEEE-TTSEEEEEETT
T ss_pred CceeEEEECCCCcCcCCEEEC----C--EEEEEcCCCEEEEEeCC
Confidence 678899988776666776652 2 38888889999999864
No 67
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=73.09 E-value=40 Score=37.25 Aligned_cols=101 Identities=11% Similarity=0.175 Sum_probs=61.8
Q ss_pred ccEEEEc-cCCcEEEEECCCCceeecceecc--CCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEE
Q 005498 570 SDVVVPT-LSGNIYVLSGKDGSKVRPYPYRT--HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV 646 (693)
Q Consensus 570 ~DIvv~s-~~G~v~~l~~~~G~~~~~~~~~~--~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i 646 (693)
..|+.++ .++.+++|+...++++....... ..-..+| .+..+++++.|-.+|.++-..- ..++
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-------------eafnF~~a~ED~nlY~~DmR~l-~~p~ 265 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-------------EAFNFVAANEDHNLYTYDMRNL-SRPL 265 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeeeccccceecCc-------------cccceeeccccccceehhhhhh-cccc
Confidence 3455544 67889999988887764433222 2222233 1234777888888998874421 1122
Q ss_pred ecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 647 DIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 647 ~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.......+.+.-.||..-|. +++.++++-.+-+|..+.
T Consensus 266 ~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hhhcccceeEEEeccCCCcc-hhccccccceEEEeecCC
Confidence 22223344455567888885 799999999999998654
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.77 E-value=1.4e+02 Score=33.65 Aligned_cols=200 Identities=17% Similarity=0.127 Sum_probs=102.4
Q ss_pred CcEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeecccccccccceEEEee--cCCCCeEEEEEcCCCcEEEEecCCC
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADI--NDDGKIELVTTDTHGNVAAWTAEGK 544 (693)
Q Consensus 467 sp~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~Dl--DgDG~~DLvv~~~~G~v~~~~~~G~ 544 (693)
++..+=+.-||.- +|+|..++.++.++.+|+....|.... .+.+.|+ .-||+.-+++. .+..++.|+....
T Consensus 314 S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr-----~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 314 SVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR-----DPKVHDLAITYDGKYVLLVT-VDKKIRLYNREAR 386 (519)
T ss_pred CcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc-----cceeEEEEEcCCCcEEEEEe-cccceeeechhhh
Confidence 3444555667754 888888889999999998765554321 1334443 45777655554 4555666654211
Q ss_pred eeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEE
Q 005498 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (693)
Q Consensus 545 ~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDI 624 (693)
..- .+. ..-+.+.-.=+-+||+.=++=. ....++.|+-.....+..+.-...+.+.-.-.++-.| ..-|
T Consensus 387 ~dr--~li-se~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~-------~~fi 455 (519)
T KOG0293|consen 387 VDR--GLI-SEEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN-------DKFI 455 (519)
T ss_pred hhh--ccc-cccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC-------cceE
Confidence 100 010 0111223334556776633332 3456777776655544333322222221111122111 1225
Q ss_pred EEEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCcc-EEEEeeCCcEEEEECCCCC
Q 005498 625 VTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD-LIVTTMNGNVFCFSTPAPH 687 (693)
Q Consensus 625 vv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lD-Lvv~s~~G~v~~~~~~~~~ 687 (693)
..++.|+.+|+++..++.....-.|- +...-+++ .|.- .+. +.-++.+|.+-+|....+-
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVs-wNP~-~p~m~ASasDDgtIRIWg~~~~~ 516 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVS-WNPA-DPEMFASASDDGTIRIWGPSDNN 516 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecCC-cceeeEEe-cCCC-CHHHhhccCCCCeEEEecCCccc
Confidence 56778999999988777654332222 11111122 2222 223 3344678999999765443
No 69
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.73 E-value=5.9 Score=28.94 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=23.6
Q ss_pred EEEEccCCcEEEEECCCCceeecceecc
Q 005498 572 VVVPTLSGNIYVLSGKDGSKVRPYPYRT 599 (693)
Q Consensus 572 Ivv~s~~G~v~~l~~~~G~~~~~~~~~~ 599 (693)
|++++.+|.+++++..+|+.+|.+....
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 6677889999999999999998776543
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=72.62 E-value=1.3e+02 Score=32.02 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=79.2
Q ss_pred EEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCcccc
Q 005498 527 LVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMN 605 (693)
Q Consensus 527 Lvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s 605 (693)
|+....++.|+.|+. +|...-...+.+. +...-+-.|| +|+.....+.|..|+.++=..+..+... .
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~~s~----VtSlEvs~dG--~ilTia~gssV~Fwdaksf~~lKs~k~P------~ 225 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEFNSP----VTSLEVSQDG--RILTIAYGSSVKFWDAKSFGLLKSYKMP------C 225 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEecCCC----CcceeeccCC--CEEEEecCceeEEeccccccceeeccCc------c
Confidence 444456778888876 6665444333322 2233444555 4666666667888887654444333222 1
Q ss_pred ceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEE-EeeCCcEEEEECC
Q 005498 606 QVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIV-TTMNGNVFCFSTP 684 (693)
Q Consensus 606 ~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv-~s~~G~v~~~~~~ 684 (693)
-+..+-|-. ..--+|.+..++++|.|+-.++-.... ....-.+.+.+.-|.-||. ++. ++.+|.+.+|.+.
T Consensus 226 nV~SASL~P-----~k~~fVaGged~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 226 NVESASLHP-----KKEFFVAGGEDFKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGE--LYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccccccccC-----CCceEEecCcceEEEEEeccCCceeee-cccCCCCceEEEEECCCCc--eeeccCCCceEEEEEec
Confidence 222333421 223356677899999998766643222 1112233444445888885 454 5899999999975
Q ss_pred CC
Q 005498 685 AP 686 (693)
Q Consensus 685 ~~ 686 (693)
..
T Consensus 298 ~~ 299 (334)
T KOG0278|consen 298 PG 299 (334)
T ss_pred CC
Confidence 43
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.54 E-value=75 Score=35.67 Aligned_cols=192 Identities=18% Similarity=0.218 Sum_probs=96.1
Q ss_pred cCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCC
Q 005498 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGK 544 (693)
Q Consensus 466 ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~ 544 (693)
..+...|+|-+++..|.. +.++.+.+++ ..+....++.. ....+..+++-..-.. +|-++.+-.+-.|+..-.
T Consensus 220 g~it~~d~d~~~~~~iAa-s~d~~~r~Wnvd~~r~~~TLsG----HtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAA-SNDKNLRLWNVDSLRLRHTLSG----HTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKA 293 (459)
T ss_pred CCcceeeecCCCceEEee-cCCCceeeeeccchhhhhhhcc----cccceeeehhhccccc-eeeccccchhhhhhhhhh
Confidence 346778999999876654 5556666666 33443322222 2223444444322211 333333322222222110
Q ss_pred eeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEE
Q 005498 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (693)
Q Consensus 545 ~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDI 624 (693)
..-...+....-..+... ..+++-+..++++.+|+...+......| .++ .+...|+.- ++..|
T Consensus 294 ~C~kt~l~~S~cnDI~~~------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg----~vtSl~ls~-----~g~~l 356 (459)
T KOG0288|consen 294 YCSKTVLPGSQCNDIVCS------ISDVISGHFDKKVRFWDIRSADKTRSVP--LGG----RVTSLDLSM-----DGLEL 356 (459)
T ss_pred heeccccccccccceEec------ceeeeecccccceEEEeccCCceeeEee--cCc----ceeeEeecc-----CCeEE
Confidence 000000111111122222 2344445567889999977776653333 232 344456643 45788
Q ss_pred EEEecCCeEEEEcCCCCceeEE------ecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 625 VTTSFDGYLYLIDGPTSCADVV------DIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 625 vv~s~dG~ly~~dG~~g~~~~i------~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
...+.+..+-++++.+...... ..+.. ++.+ + |-.||.. ++.++++|.||+|...+
T Consensus 357 LsssRDdtl~viDlRt~eI~~~~sA~g~k~asD-wtrv-v--fSpd~~Y-vaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 357 LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD-WTRV-V--FSPDGSY-VAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeecCCCceeeeecccccEEEEeeccccccccc-ccee-E--ECCCCce-eeeccCCCcEEEEEccC
Confidence 8888888888888776543321 11111 2222 1 5556654 56678999999998643
No 72
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=72.35 E-value=2.3 Score=34.13 Aligned_cols=22 Identities=14% Similarity=0.502 Sum_probs=18.2
Q ss_pred cCcE-EEeecCCCCCcEEEEeec
Q 005498 385 STPV-IADIDNDGVSEMIIAVSY 406 (693)
Q Consensus 385 sspa-iaDiDGDG~~DIVv~~s~ 406 (693)
.+.+ ++|+|+||..||+|+...
T Consensus 7 ~sv~~~~d~ngDg~~dl~vGAP~ 29 (58)
T smart00191 7 YSVAGVGDVNGDGYPDLLVGAPR 29 (58)
T ss_pred hhheeccccCCCCccCEEEeCcc
Confidence 3556 899999999999998753
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.33 E-value=61 Score=38.97 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=82.9
Q ss_pred EEEEcCCCcEEEEecCCCe--eeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCc--
Q 005498 527 LVTTDTHGNVAAWTAEGKG--IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGR-- 602 (693)
Q Consensus 527 Lvv~~~~G~v~~~~~~G~~--~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~-- 602 (693)
+|-+.-+|++++|...... .|.. +.. -++.+=+--||.. .||++..|..++|...+-++...+.+.....
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~D-l~~----lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWND-LRD----LITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred EeecccccceEEeecCcCeeEeehh-hhh----hheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 5566667888888764332 2531 111 1223334445544 7888999999999987666665555544311
Q ss_pred c-ccceEEEeccCCCCCCCCe-EEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCccEEEEeeCCcEE
Q 005498 603 V-MNQVLLVDLTKRGEKSKGL-TIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVF 679 (693)
Q Consensus 603 ~-~s~v~l~DlDGDG~~dg~l-DIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~ 679 (693)
. ...+...-+- .+.+ .|+|.+.|..+.+|++.+.... .+.-.....+...+ =|.-||+. ||.++.+-.||
T Consensus 499 ~~~~rITG~Q~~-----p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A-sfs~Dgk~-IVs~seDs~VY 571 (712)
T KOG0283|consen 499 KQGKRITGLQFF-----PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISA-SFSSDGKH-IVSASEDSWVY 571 (712)
T ss_pred ccCceeeeeEec-----CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceee-eEccCCCE-EEEeecCceEE
Confidence 0 0112211111 1113 4888899999999998544322 11101111122323 37779987 77788899999
Q ss_pred EEECCC
Q 005498 680 CFSTPA 685 (693)
Q Consensus 680 ~~~~~~ 685 (693)
+|++..
T Consensus 572 iW~~~~ 577 (712)
T KOG0283|consen 572 IWKNDS 577 (712)
T ss_pred EEeCCC
Confidence 999743
No 74
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.43 E-value=1.4e+02 Score=37.51 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=93.7
Q ss_pred CeEEEEe-CCCceeeeecccc--cccccceEEEeecCCCCeEEEEEcCCCcEEEEec--CC--Cee----eEEe---ecc
Q 005498 488 GLFYVLD-HHGKIREKFPLEM--AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA--EG--KGI----WEQH---LKS 553 (693)
Q Consensus 488 G~Lyv~~-~~G~~~~~~~~~~--g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~--~G--~~~----W~~~---~~s 553 (693)
..+.+++ ..|+.+..|.... ....+.+.+ +|.+-..=+++++.+|.+.+|+. ++ +.. |..- ...
T Consensus 1086 ~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l--iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~ 1163 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL--INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPG 1163 (1387)
T ss_pred ceEEEEecccCceeccccCCCCCCCccceeee--ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCcc
Confidence 3455565 4455544443322 111222333 46666666788889999999976 33 211 3211 111
Q ss_pred ccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeE
Q 005498 554 LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYL 633 (693)
Q Consensus 554 ~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~l 633 (693)
..... .+.|++.-.-. ++++...-.|.+|+...=......|+.+... ...+.+|+.+ +--|+++-.||.+
T Consensus 1164 ~r~~~-~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~--vTaLS~~~~~------gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1164 ARGTG-LVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTL--VTALSADLVH------GNIIAAGFADGSV 1233 (1387)
T ss_pred CCCCC-eeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccCCCcc--ceeecccccC------CceEEEeecCCce
Confidence 11122 44454432111 2222222345566654333344445443321 1223455532 2346667789999
Q ss_pred EEEcCCCCcee----EEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCC
Q 005498 634 YLIDGPTSCAD----VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (693)
Q Consensus 634 y~~dG~~g~~~----~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~ 686 (693)
.+|+-.-...+ ..+-....-. ++-.-|...|.-+||.++.+|.|+.|....+
T Consensus 1234 RvyD~R~a~~ds~v~~~R~h~~~~~-Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEP-IVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred EEeecccCCccccceeecccCCccc-ceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 88875533221 1111111111 2223477777779999999999999998763
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=71.21 E-value=49 Score=38.09 Aligned_cols=124 Identities=12% Similarity=0.207 Sum_probs=78.1
Q ss_pred cEEEecCCCCCccEEEEccCCcEEEEECCCC-ceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 005498 559 PSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG-SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (693)
Q Consensus 559 ~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G-~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~d 637 (693)
+..+-+.-+-+-.++.++.+|.+..|+..+- +.+.-+.....+....++...-+|.||. .|..++.+|-+.+++
T Consensus 271 lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-----~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 271 LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-----LIAAGCLDGSIQIWD 345 (641)
T ss_pred eeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-----hhhhcccCCceeeee
Confidence 3445566667778888888999999886432 2222233333333345677788888754 388888999888887
Q ss_pred CCCCcee-EEec-----CCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCCCCccc
Q 005498 638 GPTSCAD-VVDI-----GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLK 691 (693)
Q Consensus 638 G~~g~~~-~i~~-----g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~~~p~k 691 (693)
-...... .+.+ +....+++ . |--||.. |+-...++.+-+|.+...-.||+
T Consensus 346 ~~~~~v~p~~~vk~AH~~g~~Itsi--~-FS~dg~~-LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAHLPGQDITSI--S-FSYDGNY-LLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred cCCcccccceEeeeccCCCCceeEE--E-eccccch-hhhccCCCceeeeeccccccchh
Confidence 4333322 1211 11222322 2 6667764 55567899999999988888775
No 76
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=71.04 E-value=4.7 Score=32.35 Aligned_cols=30 Identities=43% Similarity=0.592 Sum_probs=22.9
Q ss_pred cCcE-EEecCCCCCccEEEEee-------CCeEEEEeC
Q 005498 466 SSPT-VVDLDGDGNLDILVGTS-------FGLFYVLDH 495 (693)
Q Consensus 466 ssp~-v~DlDGDG~~DIvvg~~-------~G~Lyv~~~ 495 (693)
.+++ +.|+|+||..||+|+.. .|.+|++..
T Consensus 7 ~sv~~~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~ 44 (58)
T smart00191 7 YSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFG 44 (58)
T ss_pred hhheeccccCCCCccCEEEeCcccCCCCCCCEEEEEEe
Confidence 3555 79999999999999863 356777664
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=69.95 E-value=1e+02 Score=33.65 Aligned_cols=228 Identities=16% Similarity=0.244 Sum_probs=106.9
Q ss_pred cceEEEEECCCCceEEEeeccCCcCcccccccc--ccCcEEEecCCCCCccEEE-EeeCCeEEEEe-CCCceeeeecccc
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYI--YSSPTVVDLDGDGNLDILV-GTSFGLFYVLD-HHGKIREKFPLEM 507 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~--~ssp~v~DlDGDG~~DIvv-g~~~G~Lyv~~-~~G~~~~~~~~~~ 507 (693)
+|-+-+||..+|+++-.-+. .. ...+. -.++...+|-.|- +++. +..+|+|-++. .+|.-+.+|....
T Consensus 234 DGFiEVWny~~GKlrKDLkY--QA----qd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIKvWri~tG~ClRrFdrAH 305 (508)
T KOG0275|consen 234 DGFIEVWNYTTGKLRKDLKY--QA----QDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIKVWRIETGQCLRRFDRAH 305 (508)
T ss_pred cceeeeehhccchhhhhhhh--hh----hcceeecccceEEEeecccH--HHhhccCcCCcEEEEEEecchHHHHhhhhh
Confidence 56677788777776322111 00 01111 1234556665553 4443 34577777766 5666444443221
Q ss_pred cccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEEC
Q 005498 508 AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (693)
Q Consensus 508 g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~ 586 (693)
...+...-|-.|+.. |+.++.+-.+.+--. .|+.+-+.+-.+.. +.-+-+..||.- |+-++.+|.+.+|..
T Consensus 306 ---tkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKEfrGHsSy---vn~a~ft~dG~~-iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 306 ---TKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKEFRGHSSY---VNEATFTDDGHH-IISASSDGTVKVWHG 377 (508)
T ss_pred ---ccCeeEEEEccCcch-hhcccccceEEEeccccchhHHHhcCcccc---ccceEEcCCCCe-EEEecCCccEEEecC
Confidence 122445555566543 444443333332211 34433222211111 112334456654 777788999999998
Q ss_pred CCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCccee-eEEEEeecCCC
Q 005498 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYS-MVLADNVDGGD 665 (693)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s-~v~~~DlDGDG 665 (693)
+++.-+..|...........+++.--| -..+++.+..+.+|+.+-.+.-...+..|..--. .+.+. +..-|
T Consensus 378 KtteC~~Tfk~~~~d~~vnsv~~~PKn-------peh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~-lSpkG 449 (508)
T KOG0275|consen 378 KTTECLSTFKPLGTDYPVNSVILLPKN-------PEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAI-LSPKG 449 (508)
T ss_pred cchhhhhhccCCCCcccceeEEEcCCC-------CceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEE-ecCCC
Confidence 877654434322211111222221111 2456777777777777644332222222211001 11111 33333
Q ss_pred CccEEEEeeCCcEEEEECC
Q 005498 666 DLDLIVTTMNGNVFCFSTP 684 (693)
Q Consensus 666 ~lDLvv~s~~G~v~~~~~~ 684 (693)
.- |+....++.+|||...
T Consensus 450 ew-iYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 450 EW-IYCIGEDGVLYCFSVL 467 (508)
T ss_pred cE-EEEEccCcEEEEEEee
Confidence 32 5555778999999863
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=69.87 E-value=1.9e+02 Score=35.30 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=64.8
Q ss_pred cEEEEccCCcEEEEECCCCceeecceeccCCccc--cceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEe
Q 005498 571 DVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVM--NQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVD 647 (693)
Q Consensus 571 DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~--s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~ 647 (693)
-|+++...|.+..|+-++|+.+..|+-.. .++. .+.-+.|+ ++++..+|.+.+++-+.+... .+.
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDV-----------VaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDV-----------VAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceE-----------EEEeccCceEEEEEcccCcEEEEEE
Confidence 48888889999999999999885444222 1111 11112233 456778999999886655433 333
Q ss_pred cCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 648 IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 648 ~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.. ++.+..--|--||.+=|+.++.+|.+..|.+..
T Consensus 242 ~d---~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 242 QD---WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred cc---ccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 32 222222237789999888999999999998854
No 79
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=69.25 E-value=13 Score=27.17 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.3
Q ss_pred EEEEcCCCcEEEEec-CCCeeeEEeeccccc
Q 005498 527 LVTTDTHGNVAAWTA-EGKGIWEQHLKSLVT 556 (693)
Q Consensus 527 Lvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~ 556 (693)
|+++..+|.+++++. +|+..|+........
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~ 33 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGPPVD 33 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSSGGG
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCCCCc
Confidence 667788999999998 899999988764443
No 80
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=68.60 E-value=1.1e+02 Score=37.50 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=79.8
Q ss_pred eecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCc-EEEecCCCCCccEEEEccCCcEEEEECCCCceeecce
Q 005498 518 DINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGP-SIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYP 596 (693)
Q Consensus 518 DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~-~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~ 596 (693)
=++.||. -|++++.+|.+..|...-...=. .........+ .++ .+ ...++.++.++.+.+|.-..|..-
T Consensus 20 ~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia-~~---s~~f~~~s~~~tv~~y~fps~~~~---- 89 (933)
T KOG1274|consen 20 CYDPDGE-FICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIA-CY---SNHFLTGSEQNTVLRYKFPSGEED---- 89 (933)
T ss_pred EEcCCCC-EEEEecCCCceEEeecCCcccCC-chhhccCceeEEEe-ec---ccceEEeeccceEEEeeCCCCCcc----
Confidence 3466776 57777778888887653221000 0000001111 111 11 116788888888888876555321
Q ss_pred eccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCC
Q 005498 597 YRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNG 676 (693)
Q Consensus 597 ~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G 676 (693)
..-.++.-|+...=++|+|. -++.++.+-.+-+++..+......-. +.-+.+...+++..|.. |++.+.+|
T Consensus 90 -~iL~Rftlp~r~~~v~g~g~-----~iaagsdD~~vK~~~~~D~s~~~~lr--gh~apVl~l~~~p~~~f-LAvss~dG 160 (933)
T KOG1274|consen 90 -TILARFTLPIRDLAVSGSGK-----MIAAGSDDTAVKLLNLDDSSQEKVLR--GHDAPVLQLSYDPKGNF-LAVSSCDG 160 (933)
T ss_pred -ceeeeeeccceEEEEecCCc-----EEEeecCceeEEEEeccccchheeec--ccCCceeeeeEcCCCCE-EEEEecCc
Confidence 11123344444445555543 34555555556666655443332211 22234556689998876 77778899
Q ss_pred cEEEEECCC
Q 005498 677 NVFCFSTPA 685 (693)
Q Consensus 677 ~v~~~~~~~ 685 (693)
.|++|.+..
T Consensus 161 ~v~iw~~~~ 169 (933)
T KOG1274|consen 161 KVQIWDLQD 169 (933)
T ss_pred eEEEEEccc
Confidence 999999854
No 81
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=67.57 E-value=23 Score=38.90 Aligned_cols=81 Identities=20% Similarity=0.376 Sum_probs=46.6
Q ss_pred cccccCcEEEecCCCCCccEEEEee-----------CCeEEEEe-CC-Cceeeeeccccc-ccccceEEEeecCCCCeEE
Q 005498 462 AYIYSSPTVVDLDGDGNLDILVGTS-----------FGLFYVLD-HH-GKIREKFPLEMA-EIQGAVVAADINDDGKIEL 527 (693)
Q Consensus 462 ~~~~ssp~v~DlDGDG~~DIvvg~~-----------~G~Lyv~~-~~-G~~~~~~~~~~g-~~~ss~~v~DlDgDG~~DL 527 (693)
++.++.|.++-+. +|+.=+|+++. ...||+++ .+ |..++.+....+ ...+.+.+.|.|+||..|.
T Consensus 145 G~t~s~P~I~~~~-~g~w~~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~ 223 (335)
T PF05567_consen 145 GQTWSKPQIAKVK-NGKWVVIFGSGYNSDDVDSSSGGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDR 223 (335)
T ss_dssp -B--S--EEEEET-TSSEEEEEE--BS-TT-------EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-E
T ss_pred CccccCCEEEEcc-CCcEEEEEccCCCCCcccccCCCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEE
Confidence 4567788888886 67666666642 12589999 46 888776544321 2346688999999999986
Q ss_pred E-EEcCCCcEEEEecCC
Q 005498 528 V-TTDTHGNVAAWTAEG 543 (693)
Q Consensus 528 v-v~~~~G~v~~~~~~G 543 (693)
+ +++..|+++-|+..+
T Consensus 224 vYaGDl~GnlwR~dl~~ 240 (335)
T PF05567_consen 224 VYAGDLGGNLWRFDLSS 240 (335)
T ss_dssp EEEEETTSEEEEEE--T
T ss_pred EEEEcCCCcEEEEECCC
Confidence 5 555678998887754
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.82 E-value=2.5e+02 Score=32.22 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=97.6
Q ss_pred CcEEEecCCCCCccEEEEeeCCeEEEEeCCCc-eeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCe
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDHHGK-IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (693)
Q Consensus 467 sp~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~-~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~ 545 (693)
.+..+||-.||++ +.+|...|.+-+|+..-+ .+..+ ....+.+...-|--.+..-++.++.+..+.+|+.++..
T Consensus 70 ~v~s~~fR~DG~L-laaGD~sG~V~vfD~k~r~iLR~~----~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 70 VVYSVDFRSDGRL-LAAGDESGHVKVFDMKSRVILRQL----YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ceeEEEeecCCeE-EEccCCcCcEEEeccccHHHHHHH----hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 3456888889964 344566788888883321 11111 12223344444444555566777777777788775554
Q ss_pred eeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEE
Q 005498 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (693)
Q Consensus 546 ~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIv 625 (693)
. +..+ ......+..+|+---..-=++-++++|.|..|+.+.-. .+...+.....+.+-+. +- ++. ++
T Consensus 145 v-~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~---lp------sgs-~i 211 (487)
T KOG0310|consen 145 V-QAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLA---LP------SGS-LI 211 (487)
T ss_pred E-EEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEE---cC------CCC-EE
Confidence 3 2222 22333445555421111114556688999988865332 22233332222221111 10 111 23
Q ss_pred EEecCCeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEEC
Q 005498 626 TTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 626 v~s~dG~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
+...-..+-+++-..|+........ .+-.+..-.+..|+ --|+.++-+|.+-+|.+
T Consensus 212 asAgGn~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 212 ASAGGNSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDS-TRLLSGSLDRHVKVFDT 267 (487)
T ss_pred EEcCCCeEEEEEecCCceehhhhhc-ccceEEEEEeecCC-ceEeecccccceEEEEc
Confidence 3222234555554444433222211 22233344566777 45888888888888874
No 83
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=65.78 E-value=80 Score=34.20 Aligned_cols=137 Identities=16% Similarity=0.256 Sum_probs=77.8
Q ss_pred eEEEEEcCCCcEEEEecCCCeee-EEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCcc
Q 005498 525 IELVTTDTHGNVAAWTAEGKGIW-EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRV 603 (693)
Q Consensus 525 ~DLvv~~~~G~v~~~~~~G~~~W-~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~ 603 (693)
.+|+++..+|.+..|+......- +.....+ .-..++.| ...+++++.+|.|..++-.+|... .+.++.
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~~~p-lL~c~F~d-----~~~~~~G~~dg~vr~~Dln~~~~~---~igth~-- 94 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKHGAP-LLDCAFAD-----ESTIVTGGLDGQVRRYDLNTGNED---QIGTHD-- 94 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheecCCc-eeeeeccC-----CceEEEeccCceEEEEEecCCcce---eeccCC--
Confidence 46888889999999887544211 1111111 11123443 456888888899998887666432 122221
Q ss_pred ccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce-eEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEE
Q 005498 604 MNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA-DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (693)
Q Consensus 604 ~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~-~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~ 682 (693)
.++...-.. -..--++.++.++.+-++++..... ..++.+...+ ..|+.++- |||++.+-.+.+|.
T Consensus 95 -~~i~ci~~~-----~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy----~~~v~g~~---LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 95 -EGIRCIEYS-----YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVY----CMDVSGNR---LVVGTSDRKVLIYD 161 (323)
T ss_pred -CceEEEEee-----ccCCeEEEcccCccEEEEeccccccccccccCceEE----EEeccCCE---EEEeecCceEEEEE
Confidence 122222111 0112377788888888888775322 2334444333 34555543 88888899999999
Q ss_pred CCC
Q 005498 683 TPA 685 (693)
Q Consensus 683 ~~~ 685 (693)
+..
T Consensus 162 LRn 164 (323)
T KOG1036|consen 162 LRN 164 (323)
T ss_pred ccc
Confidence 865
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=62.89 E-value=1.6e+02 Score=31.94 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=83.1
Q ss_pred EEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccc
Q 005498 527 LVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQ 606 (693)
Q Consensus 527 Lvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~ 606 (693)
++.++.+|.|++|+-...+.............+.-.-+..|| .-++.+..++.+..|+..+|... .+..+ ..|
T Consensus 43 ~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q~~---~v~~H---d~p 115 (347)
T KOG0647|consen 43 LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQVS---QVAAH---DAP 115 (347)
T ss_pred EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCCee---eeeec---ccc
Confidence 446677888999876433333222111112222334466788 55788888888888888777543 12222 223
Q ss_pred eEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc-eeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 607 VLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC-ADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 607 v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~-~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
+....+-+ +. ...=|++++-|-.|-.++-+... ...+.+.+..|++-+. .+-++|++.+..|.+|.+.+
T Consensus 116 vkt~~wv~-~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~-------~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 116 VKTCHWVP-GM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL-------YPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeEEEEec-CC--CcceeEecccccceeecccCCCCeeeeeeccceeeehhcc-------CceeEEEecCCcEEEEEcCC
Confidence 33333211 00 11245667777777777766443 3366777777764332 34478888899999999866
Q ss_pred CCC
Q 005498 686 PHH 688 (693)
Q Consensus 686 ~~~ 688 (693)
+..
T Consensus 186 ~~t 188 (347)
T KOG0647|consen 186 PPT 188 (347)
T ss_pred Ccc
Confidence 543
No 85
>PTZ00421 coronin; Provisional
Probab=62.84 E-value=2.9e+02 Score=31.99 Aligned_cols=120 Identities=19% Similarity=0.243 Sum_probs=69.8
Q ss_pred cceEEEeecC-CCCeEEEEEcCCCcEEEEecCCCe-ee--EEeec--cccccCcEEEecCCCCCccEEEEccCCcEEEEE
Q 005498 512 GAVVAADIND-DGKIELVTTDTHGNVAAWTAEGKG-IW--EQHLK--SLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLS 585 (693)
Q Consensus 512 ss~~v~DlDg-DG~~DLvv~~~~G~v~~~~~~G~~-~W--~~~~~--s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~ 585 (693)
..+....++. |+. -|+.++.++.+.+|+..... .. ...+. ......+....++-++..=|+.++.++.+.+|+
T Consensus 76 ~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 76 GPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 3455666665 554 47778889999999863221 10 00111 111223444556655433355566788999999
Q ss_pred CCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc
Q 005498 586 GKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC 642 (693)
Q Consensus 586 ~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~ 642 (693)
..++.....+. .+ ..++....++.|| .-|++++.++.+.+++...+.
T Consensus 155 l~tg~~~~~l~--~h---~~~V~sla~spdG-----~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 155 VERGKAVEVIK--CH---SDQITSLEWNLDG-----SLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCCCeEEEEEc--CC---CCceEEEEEECCC-----CEEEEecCCCEEEEEECCCCc
Confidence 87776543222 11 2345556665543 246778889999999877654
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=62.18 E-value=98 Score=35.79 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=65.4
Q ss_pred EEEEeeCCeEEEEeCCCceeeeeccc------c---cccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCe----ee
Q 005498 481 ILVGTSFGLFYVLDHHGKIREKFPLE------M---AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG----IW 547 (693)
Q Consensus 481 Ivvg~~~G~Lyv~~~~G~~~~~~~~~------~---g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~----~W 547 (693)
|++.+......+++.+|..+-.+... + -.....+..+-++-+-+.+++.++.+|.+++|+.+... .+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 33334444555666666544333211 1 11234566677777888899999999999999874322 23
Q ss_pred EEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEEC
Q 005498 548 EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (693)
Q Consensus 548 ~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~ 586 (693)
.....+..-..++..-+|.||.. |..+..+|.|-+|..
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDK 346 (641)
T ss_pred eeccCCCcccCceeeecCCCcch-hhhcccCCceeeeec
Confidence 32222222334567789999988 888888898888884
No 87
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=61.02 E-value=12 Score=25.75 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEccCCcEEEEECCCCceeecc
Q 005498 572 VVVPTLSGNIYVLSGKDGSKVRPY 595 (693)
Q Consensus 572 Ivv~s~~G~v~~l~~~~G~~~~~~ 595 (693)
+++++.+|.+++++..+|+..|.+
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 777788899999999999998764
No 88
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=60.56 E-value=91 Score=35.41 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=71.0
Q ss_pred eecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEec---C-CCCCccEEEEcc
Q 005498 502 KFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDV---D-GDGHSDVVVPTL 577 (693)
Q Consensus 502 ~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDl---D-GDG~~DIvv~s~ 577 (693)
.|....|...-.+.+....+ ...+|++... ..+++++.+|...|.+++.. .+..+..-.. + +....-++|++.
T Consensus 232 dWs~nlGE~~l~i~v~~~~~-~~~~IvvLge-r~Lf~l~~~G~l~~~krLd~-~p~~~~~Y~~~~~~~~~~~~~llV~t~ 308 (418)
T PF14727_consen 232 DWSFNLGEQALDIQVVRFSS-SESDIVVLGE-RSLFCLKDNGSLRFQKRLDY-NPSCFCPYRVPWYNEPSTRLNLLVGTH 308 (418)
T ss_pred eeEEECCceeEEEEEEEcCC-CCceEEEEec-ceEEEEcCCCeEEEEEecCC-ceeeEEEEEeecccCCCCceEEEEEec
Confidence 34444465555566766654 4567777654 46899999999999988742 2222222222 1 122334899999
Q ss_pred CCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEE
Q 005498 578 SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLI 636 (693)
Q Consensus 578 ~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~ 636 (693)
++.+.+|. +.++.|....... +-.+..+.+.+ -.--||+.+.+|.+.+.
T Consensus 309 t~~LlVy~--d~~L~WsA~l~~~---PVal~v~~~~~-----~~G~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 309 TGTLLVYE--DTTLVWSAQLPHV---PVALSVANFNG-----LKGLIVSLSDEGQLSVS 357 (418)
T ss_pred CCeEEEEe--CCeEEEecCCCCC---CEEEEecccCC-----CCceEEEEcCCCcEEEE
Confidence 99999998 5677775444211 12233444421 11226777778876653
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.65 E-value=1e+02 Score=36.78 Aligned_cols=134 Identities=14% Similarity=0.180 Sum_probs=72.4
Q ss_pred cEEEEeeCCeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCc
Q 005498 480 DILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGP 559 (693)
Q Consensus 480 DIvvg~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~ 559 (693)
.++.++.+..|+++.+ |+.+..|..++.- ...+++.| . ..++.++.+|.+..|+.+|..+-+..-......++
T Consensus 153 ~~vTgsaDKtIklWk~-~~~l~tf~gHtD~-VRgL~vl~--~---~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG-GTLLKTFSGHTDC-VRGLAVLD--D---SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSI 225 (745)
T ss_pred cEEeccCcceeeeccC-Cchhhhhccchhh-eeeeEEec--C---CCeEeecCCceEEEEeccCceeeeeeccceEEEEE
Confidence 5666677778888876 6555444443322 22344443 2 13777888888888888777665543211111111
Q ss_pred EEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEec-cCCCCCCCCeEEEEEecCCeEEEEcC
Q 005498 560 SIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDL-TKRGEKSKGLTIVTTSFDGYLYLIDG 638 (693)
Q Consensus 560 ~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~Dl-DGDG~~dg~lDIvv~s~dG~ly~~dG 638 (693)
... . +.-+|+-+..++.+..|.. +........++.. +.+ +-=+ || ||++++.||.+|+|.-
T Consensus 226 s~~---~-~~~~Ivs~gEDrtlriW~~--~e~~q~I~lPtts-iWs---a~~L~Ng--------DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 226 SMA---L-SDGLIVSTGEDRTLRIWKK--DECVQVITLPTTS-IWS---AKVLLNG--------DIVVGGSDGRVRVFTV 287 (745)
T ss_pred Eec---C-CCCeEEEecCCceEEEeec--CceEEEEecCccc-eEE---EEEeeCC--------CEEEeccCceEEEEEe
Confidence 111 1 1123555556788888884 3333222222211 111 1112 54 4999999999999853
No 90
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=57.57 E-value=55 Score=34.70 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=48.8
Q ss_pred cccceEEEeccCCCCCCCCeEEEEEec-----CCeEEEEcCCCCceeEEecCCcceeeE-EEEeecCCCCccEEEEeeCC
Q 005498 603 VMNQVLLVDLTKRGEKSKGLTIVTTSF-----DGYLYLIDGPTSCADVVDIGETSYSMV-LADNVDGGDDLDLIVTTMNG 676 (693)
Q Consensus 603 ~~s~v~l~DlDGDG~~dg~lDIvv~s~-----dG~ly~~dG~~g~~~~i~~g~~~~s~v-~~~DlDGDG~lDLvv~s~~G 676 (693)
+++-+.++|+.|||. .-|++++. +-.+-+|+|..-..+ +.+.+-+.+.. ...|-..-..+-|.|+. ..
T Consensus 16 ~ssC~~l~Dl~gDGd----~kLvvaD~g~~~~~~kLKVykGt~l~~E-~~L~d~P~ai~sFy~d~~ep~~P~iAVA~-G~ 89 (257)
T PF14779_consen 16 FSSCMALADLQGDGD----YKLVVADLGTGDQNMKLKVYKGTSLISE-ITLPDLPSAIVSFYMDEHEPRTPAIAVAA-GP 89 (257)
T ss_pred cCceeEeeecCCCCe----EEEEEEecCCcCCCceEEEEcCCChhhc-ccccCCCeEEEEEeccCCCCCCCeEEEEe-CC
Confidence 455678999998854 77888873 357888888754332 22222222211 12233334566566665 67
Q ss_pred cEEEEECCCCCC
Q 005498 677 NVFCFSTPAPHH 688 (693)
Q Consensus 677 ~v~~~~~~~~~~ 688 (693)
.||+|++-.||-
T Consensus 90 ~vyiYkNlkP~y 101 (257)
T PF14779_consen 90 SVYIYKNLKPFY 101 (257)
T ss_pred EEEEEeccccee
Confidence 899999877763
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.72 E-value=2.5e+02 Score=34.01 Aligned_cols=142 Identities=19% Similarity=0.261 Sum_probs=79.6
Q ss_pred cEEEEeeCCeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCee---eEEeecc---
Q 005498 480 DILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI---WEQHLKS--- 553 (693)
Q Consensus 480 DIvvg~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~---W~~~~~s--- 553 (693)
=+|-|+-+|++.++.......-.|.- ..-.+.++-+--||+. .|++..+|..+.|...|... |......
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWND----LRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehh----hhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 45666677887777754443322211 1123445556677764 77788899988888766543 3332221
Q ss_pred ---ccccCcEEEecCCCCCc-cEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEec
Q 005498 554 ---LVTQGPSIGDVDGDGHS-DVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF 629 (693)
Q Consensus 554 ---~~~~~~~vgDlDGDG~~-DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~ 629 (693)
....++.+.= |.+ .|+|.+.+.+|.+|++.+-.++-.|.-.. ...++ ..+-|.-|| --||.++.
T Consensus 499 ~~~~rITG~Q~~p----~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~--n~~SQ-~~Asfs~Dg-----k~IVs~se 566 (712)
T KOG0283|consen 499 KQGKRITGLQFFP----GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR--NTSSQ-ISASFSSDG-----KHIVSASE 566 (712)
T ss_pred ccCceeeeeEecC----CCCCeEEEecCCCceEEEeccchhhhhhhcccc--cCCcc-eeeeEccCC-----CEEEEeec
Confidence 1111222211 223 58888889999999986555554343111 11111 223333233 46888889
Q ss_pred CCeEEEEcC
Q 005498 630 DGYLYLIDG 638 (693)
Q Consensus 630 dG~ly~~dG 638 (693)
+.+||+++-
T Consensus 567 Ds~VYiW~~ 575 (712)
T KOG0283|consen 567 DSWVYIWKN 575 (712)
T ss_pred CceEEEEeC
Confidence 999999874
No 92
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=55.27 E-value=2e+02 Score=27.64 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=68.1
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEeCCCcee----eeec---ccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec
Q 005498 469 TVVDLDGDGNLDILVGTSFGLFYVLDHHGKIR----EKFP---LEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541 (693)
Q Consensus 469 ~v~DlDGDG~~DIvvg~~~G~Lyv~~~~G~~~----~~~~---~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~ 541 (693)
+++-+||.. +-|++++..|+|++++...... +.-+ +..+.....++++-|+.+...|+++......+.+|+-
T Consensus 2 aiGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred eEEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 355566655 4678888889999988543211 1111 1223445668888888666667777777778889876
Q ss_pred -CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCce
Q 005498 542 -EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK 591 (693)
Q Consensus 542 -~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~ 591 (693)
+....|-+.+. .....+.++-+.. ....+++...+=.+.-|+. .|..
T Consensus 81 ~~N~d~Fyke~~-DGvn~i~~g~~~~-~~~~l~ivGGncsi~Gfd~-~G~e 128 (136)
T PF14781_consen 81 ENNSDLFYKEVP-DGVNAIVIGKLGD-IPSPLVIVGGNCSIQGFDY-EGNE 128 (136)
T ss_pred ccCchhhhhhCc-cceeEEEEEecCC-CCCcEEEECceEEEEEeCC-CCcE
Confidence 33334444433 2333455665533 3344555544445666664 3543
No 93
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=54.34 E-value=3.4e+02 Score=30.04 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=94.7
Q ss_pred EEEEeeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecC--CC---eeeEEeeccc
Q 005498 481 ILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE--GK---GIWEQHLKSL 554 (693)
Q Consensus 481 Ivvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~--G~---~~W~~~~~s~ 554 (693)
|+++.++|.+.+|+ .+|..+..|....+ ....+.+.+ .|+---++.+..+|.|.+|+.. +. ..|+...
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~-~~N~vrf~~--~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--- 116 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPA-TTNGVRFIS--CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--- 116 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCC-cccceEEec--CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC---
Confidence 66777889999998 56776655543322 223445543 3355567888889999999762 21 2233221
Q ss_pred cccCcEEEecCCCCCccEEEEcc-----CCcEEEEECCCCce-eecceeccCCccccceEEEeccCCCCCCCCeE-EEEE
Q 005498 555 VTQGPSIGDVDGDGHSDVVVPTL-----SGNIYVLSGKDGSK-VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT-IVTT 627 (693)
Q Consensus 555 ~~~~~~vgDlDGDG~~DIvv~s~-----~G~v~~l~~~~G~~-~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lD-Ivv~ 627 (693)
+......|+| .+.-|+.... ...+++|+-+.-+. +..+.-.....+ ..+.+-= ..++ |+.+
T Consensus 117 -~~~f~~ld~n--ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV-T~lrFHP--------~~pnlLlSG 184 (376)
T KOG1188|consen 117 -GTPFICLDLN--CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV-TQLRFHP--------SDPNLLLSG 184 (376)
T ss_pred -CCcceEeecc--CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc-eeEEecC--------CCCCeEEee
Confidence 1222334443 2333444321 23455555432222 221111111111 1111111 1133 5678
Q ss_pred ecCCeEEEEcCCCCcee-----EEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 628 SFDGYLYLIDGPTSCAD-----VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 628 s~dG~ly~~dG~~g~~~-----~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
+.||.+-+|+-.....+ .|+.+.+. -.++ +-++|+--|.+-+..+..+.|+..-
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI---~~ig-w~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINHGSSI---HLIG-WLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhccccee---eeee-eecCCcceEEEEEccCceeEEEccC
Confidence 88999999875533211 34433322 2233 6678866688778888888887643
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=53.29 E-value=3.2e+02 Score=29.41 Aligned_cols=155 Identities=13% Similarity=0.219 Sum_probs=85.5
Q ss_pred ceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCce
Q 005498 513 AVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK 591 (693)
Q Consensus 513 s~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~ 591 (693)
++.-.-+|.+|.+ |+.+..+....+|.. +|..+=+.. ....++...|+|.|-+. ++.++.+..+.+|+-.+|+.
T Consensus 12 plTqiKyN~eGDL-lFscaKD~~~~vw~s~nGerlGty~---GHtGavW~~Did~~s~~-liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 12 PLTQIKYNREGDL-LFSCAKDSTPTVWYSLNGERLGTYD---GHTGAVWCCDIDWDSKH-LITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccceEEecCCCcE-EEEecCCCCceEEEecCCceeeeec---CCCceEEEEEecCCcce-eeeccccceeEEEEcCCCcE
Confidence 4556677888843 333444555555554 666432221 11123445777776544 55566677888999999999
Q ss_pred eecceeccCCccccceEEEeccCCCCCCCCeEEEEEe----cCCeEEEEcCCCCc--------eeEEecCCcceeeEEEE
Q 005498 592 VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS----FDGYLYLIDGPTSC--------ADVVDIGETSYSMVLAD 659 (693)
Q Consensus 592 ~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s----~dG~ly~~dG~~g~--------~~~i~~g~~~~s~v~~~ 659 (693)
+..|+.. .++...|++-+|. +-+++.. ..+.+.+++-.... ...|...++....++
T Consensus 87 la~~k~~------~~Vk~~~F~~~gn----~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~-- 154 (327)
T KOG0643|consen 87 LATWKTN------SPVKRVDFSFGGN----LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL-- 154 (327)
T ss_pred EEEeecC------CeeEEEeeccCCc----EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee--
Confidence 8777643 5667788876543 3333333 23456666533111 123333332222221
Q ss_pred eecCCCCccEEEEeeCCcEEEEECCCC
Q 005498 660 NVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (693)
Q Consensus 660 DlDGDG~lDLvv~s~~G~v~~~~~~~~ 686 (693)
...=|. =||.+..+|.+..|...+.
T Consensus 155 -Wg~l~~-~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 155 -WGPLGE-TIIAGHEDGSISIYDARTG 179 (327)
T ss_pred -ecccCC-EEEEecCCCcEEEEEcccC
Confidence 111122 2677788999999987654
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=52.85 E-value=1.6e+02 Score=32.15 Aligned_cols=197 Identities=19% Similarity=0.385 Sum_probs=102.3
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeccccc-c---cccceEEEeecCCCCeEEEEEcCCCcEEEEec-
Q 005498 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMA-E---IQGAVVAADINDDGKIELVTTDTHGNVAAWTA- 541 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g-~---~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~- 541 (693)
+..+-|-.||. =++.++.+|.|.+++ -+|+.......+.. . .-..+...+|-.|-.+ +..+..+|.+-+|..
T Consensus 216 ~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM-lAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 216 VECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM-LASGSQDGKIKVWRIE 293 (508)
T ss_pred hhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH-hhccCcCCcEEEEEEe
Confidence 44566667774 355566788898888 57876543222211 1 1234566677666422 344556777777765
Q ss_pred CCCee--eEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCC
Q 005498 542 EGKGI--WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKS 619 (693)
Q Consensus 542 ~G~~~--W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~d 619 (693)
+|.-+ |.+. ....+...-|-.|+.. |+-++.+..+..---+.|+.+..|. .+..+.+.. -+..|
T Consensus 294 tG~ClRrFdrA----HtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKEfr--GHsSyvn~a---~ft~d---- 359 (508)
T KOG0275|consen 294 TGQCLRRFDRA----HTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKEFR--GHSSYVNEA---TFTDD---- 359 (508)
T ss_pred cchHHHHhhhh----hccCeeEEEEccCcch-hhcccccceEEEeccccchhHHHhc--Cccccccce---EEcCC----
Confidence 55432 3211 1223334444445432 4444444444444445777664443 222222222 23222
Q ss_pred CCeEEEEEecCCeEEEEcCCCC-ceeEEecCCccee--eEEEEeecCCCCccEEEEeeCCcEEEEECC
Q 005498 620 KGLTIVTTSFDGYLYLIDGPTS-CADVVDIGETSYS--MVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (693)
Q Consensus 620 g~lDIvv~s~dG~ly~~dG~~g-~~~~i~~g~~~~s--~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~ 684 (693)
+-.|+.++.+|.+-++++++. |...+.....-++ .+.. |-.+ -.-+||++....+|+....
T Consensus 360 -G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~--~PKn-peh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 360 -GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL--LPKN-PEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred -CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE--cCCC-CceEEEEcCCCeEEEEecc
Confidence 346889999999999988754 5544433333222 2221 3333 3346666666666665543
No 96
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=52.82 E-value=1.2e+02 Score=33.58 Aligned_cols=194 Identities=19% Similarity=0.183 Sum_probs=98.0
Q ss_pred CcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCe
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (693)
Q Consensus 467 sp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~ 545 (693)
++...+++.- -||-|+++..+.+++ ++|..+..+-.... .+.-.-++ .| =+|.++.+..+.+|+.....
T Consensus 239 SVLCLqyd~r---viisGSSDsTvrvWDv~tge~l~tlihHce----aVLhlrf~-ng--~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 239 SVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPLNTLIHHCE----AVLHLRFS-NG--YMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred cEEeeeccce---EEEecCCCceEEEEeccCCchhhHHhhhcc----eeEEEEEe-CC--EEEEecCCceeEEEeccCch
Confidence 4566666543 344455677888888 77876543211111 12222222 22 24555566666776653221
Q ss_pred eeE-EeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEE
Q 005498 546 IWE-QHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (693)
Q Consensus 546 ~W~-~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDI 624 (693)
.-. .++--..-.++.+.|++. + =||-++.+-.+..|+..++.++.... .+ ...+...-.++ --+
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd~--k-yIVsASgDRTikvW~~st~efvRtl~--gH---kRGIAClQYr~-------rlv 373 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFDD--K-YIVSASGDRTIKVWSTSTCEFVRTLN--GH---KRGIACLQYRD-------RLV 373 (499)
T ss_pred HHHHHHHHhhhhhheeeecccc--c-eEEEecCCceEEEEeccceeeehhhh--cc---cccceehhccC-------eEE
Confidence 000 001001112345567643 2 23444445578888888887763222 11 12334444432 236
Q ss_pred EEEecCCeEEEEcCCCCceeEEecC-CcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCCCCccc
Q 005498 625 VTTSFDGYLYLIDGPTSCADVVDIG-ETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLK 691 (693)
Q Consensus 625 vv~s~dG~ly~~dG~~g~~~~i~~g-~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~~~p~k 691 (693)
|.++.+..+.+++...|.-.++--| +.-...+. ||.- -|+-+.++|.+-+|.++..-.|..
T Consensus 374 VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciR---Fd~k---rIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 374 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR---FDNK---RIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred EecCCCceEEEEeccccHHHHHHhchHHhhhhee---ecCc---eeeeccccceEEEEecccccCCcc
Confidence 6677788888887665532211111 11111222 3322 277778899999999887766643
No 97
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=52.07 E-value=4.5e+02 Score=30.75 Aligned_cols=193 Identities=14% Similarity=0.126 Sum_probs=94.3
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccc-cccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCe
Q 005498 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE-IQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~-~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~ 545 (693)
+++.-+..|| .-|+-+..+|.|.-++ ..|.-- ++. +. ...++ .-+.....-+|+....+..+.++...+..
T Consensus 323 ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~---~~~-g~~h~nqI--~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 323 ITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSD---RLA-GKGHTNQI--KGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred eeEEEEcCCC-CEEEeeccCceEEEEecCCcccc---ccc-cccccceE--EEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 4555566677 5566677788766555 455421 111 11 11122 22223344578888888888887663332
Q ss_pred eeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEE
Q 005498 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (693)
Q Consensus 546 ~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIv 625 (693)
. .....-....+|...=.+.||. +++......+.+|+..++-.. .+. .+..+.++...+ +.+++
T Consensus 396 ~-t~~~~~~lg~QP~~lav~~d~~--~avv~~~~~iv~l~~~~~~~~--~~~----~y~~s~vAv~~~-------~~~va 459 (603)
T KOG0318|consen 396 Y-TKSEVVKLGSQPKGLAVLSDGG--TAVVACISDIVLLQDQTKVSS--IPI----GYESSAVAVSPD-------GSEVA 459 (603)
T ss_pred c-cccceeecCCCceeEEEcCCCC--EEEEEecCcEEEEecCCccee--ecc----ccccceEEEcCC-------CCEEE
Confidence 1 1110001112222222333432 344444566777775444322 121 112233333333 35788
Q ss_pred EEecCCeEEEEcCCCC--ceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCC
Q 005498 626 TTSFDGYLYLIDGPTS--CADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (693)
Q Consensus 626 v~s~dG~ly~~dG~~g--~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~ 686 (693)
++..+|.+++|.-... +.....+. ..+.+...=+-.||.. |+++..++.+.+|.....
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~--h~a~iT~vaySpd~~y-la~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLE--HRAAITDVAYSPDGAY-LAAGDASRKVVLYDVASR 519 (603)
T ss_pred EecccceEEEEEecCCcccceeeeec--ccCCceEEEECCCCcE-EEEeccCCcEEEEEcccC
Confidence 9999998777653322 22211111 1111111126667764 667778888888887653
No 98
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=51.09 E-value=34 Score=40.34 Aligned_cols=67 Identities=25% Similarity=0.473 Sum_probs=48.0
Q ss_pred cceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCcc--EEEEeeCCeEEEEe-CCCceee
Q 005498 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLD--ILVGTSFGLFYVLD-HHGKIRE 501 (693)
Q Consensus 432 ~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~D--Ivvg~~~G~Lyv~~-~~G~~~~ 501 (693)
..+++++|.++|+.+|.++..... .-.--....|++.|+-.||+.- ++..+..|.+|+++ .+|+++-
T Consensus 425 sssivAlD~~TG~~kW~yQtvhhD---lWDmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRrtGe~lv 494 (773)
T COG4993 425 SSSIVALDATTGKLKWVYQTVHHD---LWDMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDRRTGELLV 494 (773)
T ss_pred cceeEEecCCCcceeeeeeccCcc---hhcccCCCCceEEEeecCCcEeeeeecccccCcEEEEEcCCCcccc
Confidence 567999999999999988652110 0011134678999999998643 55556788999999 6888654
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=50.73 E-value=5.8e+02 Score=31.69 Aligned_cols=187 Identities=11% Similarity=0.105 Sum_probs=96.0
Q ss_pred cEEEEeeCCeEEEEe-CCCc---eeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccc
Q 005498 480 DILVGTSFGLFYVLD-HHGK---IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL 554 (693)
Q Consensus 480 DIvvg~~~G~Lyv~~-~~G~---~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~ 554 (693)
.++.++.++.+.+|. ..|. .+.+| ...+...=++++|.. +++++.+-.|-+++. ++......+ .
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rf-------tlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~lr---g 136 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARF-------TLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVLR---G 136 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeee-------eccceEEEEecCCcE-EEeecCceeEEEEeccccchheeec---c
Confidence 566666666666665 2222 22222 233455556888875 444545545556555 333322211 1
Q ss_pred cccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccC--Ccc-ccceEEEeccCCCCCCCCeEEEEEecCC
Q 005498 555 VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH--GRV-MNQVLLVDLTKRGEKSKGLTIVTTSFDG 631 (693)
Q Consensus 555 ~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~--g~~-~s~v~l~DlDGDG~~dg~lDIvv~s~dG 631 (693)
....+.-.+++-.|.. |++.+.+|.+++|+-.+|.....++.... ... .....-.-+-.+ +..+.+...++
T Consensus 137 h~apVl~l~~~p~~~f-LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-----~g~la~~~~d~ 210 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNF-LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK-----GGTLAVPPVDN 210 (933)
T ss_pred cCCceeeeeEcCCCCE-EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC-----CCeEEeeccCC
Confidence 1223344666655544 45556799999999988865533321111 111 222222233222 23466666667
Q ss_pred eEEEEcCCCCceeEEecCCccee-eEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 632 YLYLIDGPTSCADVVDIGETSYS-MVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 632 ~ly~~dG~~g~~~~i~~g~~~~s-~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.|-+|+..+.. ..+.+.....+ .+..--+.-+|.. |..++.+|.|.+|...+
T Consensus 211 ~Vkvy~r~~we-~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 TVKVYSRKGWE-LQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEEEccCCce-eheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 77767644332 22222222222 1222236677765 67778999999998764
No 100
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=50.45 E-value=4e+02 Score=29.64 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=36.0
Q ss_pred CeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCccEEEEe-eCCcEEEEECCC
Q 005498 631 GYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (693)
Q Consensus 631 G~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lDLvv~s-~~G~v~~~~~~~ 685 (693)
+.+++++..++... .+.+|...++ +. +..||++-|++++ .++.|.++...+
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~~~~~---ia-vS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGHEIDS---IN-VSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCCceee---EE-ECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 46788887666543 5666665555 33 8899998899887 567799888643
No 101
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=50.40 E-value=3.4e+02 Score=28.92 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecc-e---ecc
Q 005498 524 KIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPY-P---YRT 599 (693)
Q Consensus 524 ~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~-~---~~~ 599 (693)
..+|++++.+|++++|+.... .+...+.......+.-.-+.-||.+ ++.++..|..|+|+..++.....+ | +..
T Consensus 136 QteLis~dqsg~irvWDl~~~-~c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGEN-SCTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred cceEEeecCCCcEEEEEccCC-ccccccCCCCCcceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccceEhhheec
Confidence 458999999999999987332 1222211111122233334456765 566667899999987655433222 1 111
Q ss_pred CCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEec-CCcceeeEEEEeecCCCCccEEEEeeCCcE
Q 005498 600 HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDI-GETSYSMVLADNVDGGDDLDLIVTTMNGNV 678 (693)
Q Consensus 600 ~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~-g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v 678 (693)
+. ..++-.-+..|+ .-|++.+.+-.+++++-.+-+.....+ +...+. .=..|.+||.. |+.++.++.+
T Consensus 214 h~---~~il~C~lSPd~-----k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWv--Wdc~FS~dg~Y-lvTassd~~~ 282 (311)
T KOG0315|consen 214 HN---GHILRCLLSPDV-----KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWV--WDCAFSADGEY-LVTASSDHTA 282 (311)
T ss_pred cc---ceEEEEEECCCC-----cEEEeecCCceEEEEecCCceeeEEEeecCCceE--EeeeeccCccE-EEecCCCCce
Confidence 11 122222333322 346666677777777655443222222 222222 22347788875 6666777888
Q ss_pred EEEECC
Q 005498 679 FCFSTP 684 (693)
Q Consensus 679 ~~~~~~ 684 (693)
..|...
T Consensus 283 rlW~~~ 288 (311)
T KOG0315|consen 283 RLWDLS 288 (311)
T ss_pred eecccc
Confidence 888764
No 102
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=50.28 E-value=16 Score=28.41 Aligned_cols=20 Identities=45% Similarity=0.637 Sum_probs=18.0
Q ss_pred EEEEecceeEEEEeecCccc
Q 005498 139 IALATYNGEVLFFRVSGYMM 158 (693)
Q Consensus 139 ~~~~~~~ge~~~~~~~g~~~ 158 (693)
|+++|.+|+|+.|+-+|+++
T Consensus 26 iA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 26 IALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred EEEEECCCeEEEEECCCcCc
Confidence 78999999999999999853
No 103
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=49.75 E-value=3.9e+02 Score=29.39 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=29.8
Q ss_pred EEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEEC
Q 005498 633 LYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 633 ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
+|++....|....|--|...- .+-|++-+-.-=+|+....|.+|+|..
T Consensus 274 LYIWE~~~GsLVKILhG~kgE---~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILHGTKGE---ELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred EEEEecCCcceeeeecCCchh---heeecccccceeeeeeccCCceEEEEe
Confidence 566655555444433332211 244677777777888888999999975
No 104
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=47.42 E-value=28 Score=23.83 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=19.1
Q ss_pred EEEEeeCCeEEEEeC-CCceeeee
Q 005498 481 ILVGTSFGLFYVLDH-HGKIREKF 503 (693)
Q Consensus 481 Ivvg~~~G~Lyv~~~-~G~~~~~~ 503 (693)
+++++.+|.|++++. +|+.+|.+
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 677778899999994 89998875
No 105
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=45.64 E-value=4.6e+02 Score=29.04 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=47.2
Q ss_pred CcEEEecCCCCCccEEEEeeCCeEEEEe--CCCceeeeecc--ccccc------ccceEEEeecCCCCeEEEEEcCCCcE
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLD--HHGKIREKFPL--EMAEI------QGAVVAADINDDGKIELVTTDTHGNV 536 (693)
Q Consensus 467 sp~v~DlDGDG~~DIvvg~~~G~Lyv~~--~~G~~~~~~~~--~~g~~------~ss~~v~DlDgDG~~DLvv~~~~G~v 536 (693)
.|+-+.+|.||+.-++.....|.+.++. .+|.+...... ..+.. ..-+..++++-||+.-+++-=...++
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 4577889999977666655667777766 45664322111 11211 12267888889987644444344567
Q ss_pred EEEec-CCCee
Q 005498 537 AAWTA-EGKGI 546 (693)
Q Consensus 537 ~~~~~-~G~~~ 546 (693)
+.|+. +|...
T Consensus 170 ~~y~~~dg~L~ 180 (346)
T COG2706 170 FLYDLDDGKLT 180 (346)
T ss_pred EEEEcccCccc
Confidence 77766 55544
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=44.08 E-value=2.6e+02 Score=32.42 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=80.3
Q ss_pred eEEEeecCCCCeEEEEEcCCCcEEEEecC-CCeeeEEeeccccccCcEEEecCCCCCccEEEE-ccCCcEEEEECCCCce
Q 005498 514 VVAADINDDGKIELVTTDTHGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVP-TLSGNIYVLSGKDGSK 591 (693)
Q Consensus 514 ~~v~DlDgDG~~DLvv~~~~G~v~~~~~~-G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~-s~~G~v~~l~~~~G~~ 591 (693)
+.-+-+-.||+. |+++..-..+.+|+.. -.+.-...+.+.. ...-.-+++-|-+ |.++ ..+|.|.+|+..+-..
T Consensus 468 iRSckL~pdgrt-LivGGeastlsiWDLAapTprikaeltssa-paCyALa~spDak--vcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 468 IRSCKLLPDGRT-LIVGGEASTLSIWDLAAPTPRIKAELTSSA-PACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred eeeeEecCCCce-EEeccccceeeeeeccCCCcchhhhcCCcc-hhhhhhhcCCccc--eeeeeccCCcEEEEEccccee
Confidence 445556677764 5666556677777662 2222222221111 1111234444443 3333 3589999999887777
Q ss_pred eecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce-eEEecCCcceeeEEEEeecCCCCccEE
Q 005498 592 VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA-DVVDIGETSYSMVLADNVDGGDDLDLI 670 (693)
Q Consensus 592 ~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~-~~i~~g~~~~s~v~~~DlDGDG~lDLv 670 (693)
+..|+-.+. .+...|+..|| .-|-++..|..|.+++-..+.. .+.++....++. + .--.|. =|+
T Consensus 544 VrqfqGhtD-----GascIdis~dG-----tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSL---g-~cP~~d-Wla 608 (705)
T KOG0639|consen 544 VRQFQGHTD-----GASCIDISKDG-----TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSL---G-YCPTGD-WLA 608 (705)
T ss_pred eecccCCCC-----CceeEEecCCC-----ceeecCCCccceeehhhhhhhhhhhhhhhhhheec---c-cCCCcc-cee
Confidence 766654433 34567786654 3566777777787777554432 122222222221 0 000111 055
Q ss_pred EEeeCCcEEEEECCCC
Q 005498 671 VTTMNGNVFCFSTPAP 686 (693)
Q Consensus 671 v~s~~G~v~~~~~~~~ 686 (693)
|+-.++++.++.+..|
T Consensus 609 vGMens~vevlh~skp 624 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKP 624 (705)
T ss_pred eecccCcEEEEecCCc
Confidence 6666777777766553
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=42.19 E-value=3.8e+02 Score=32.06 Aligned_cols=147 Identities=15% Similarity=0.215 Sum_probs=79.5
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEEeeccccc---cCcEEEecCCCCCccEEEE-ccCCcEEEEECCCC--ceeecceecc
Q 005498 526 ELVTTDTHGNVAAWTAEGKGIWEQHLKSLVT---QGPSIGDVDGDGHSDVVVP-TLSGNIYVLSGKDG--SKVRPYPYRT 599 (693)
Q Consensus 526 DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~---~~~~vgDlDGDG~~DIvv~-s~~G~v~~l~~~~G--~~~~~~~~~~ 599 (693)
-+|.++.+-.|.+|+..-...|-........ ..++.. --...+++. .-++.|++|+-..| +.+..+....
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~----ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI----AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec----ccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 4666667777888877444455333222211 122221 012234443 34678888887777 2333333222
Q ss_pred CCcc----ccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceeEEecCCccee-eEEEEeecCCCCccEEEEee
Q 005498 600 HGRV----MNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYS-MVLADNVDGGDDLDLIVTTM 674 (693)
Q Consensus 600 ~g~~----~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~~i~~g~~~~s-~v~~~DlDGDG~lDLvv~s~ 674 (693)
.... -.++...++|. .+..|+.++..+.+.+++....... +.+.+..-. .+++ ++.||.- ++-++.
T Consensus 163 ~~sl~sG~k~siYSLA~N~-----t~t~ivsGgtek~lr~wDprt~~ki-mkLrGHTdNVr~ll--~~dDGt~-~ls~sS 233 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQ-----TGTIIVSGGTEKDLRLWDPRTCKKI-MKLRGHTDNVRVLL--VNDDGTR-LLSASS 233 (735)
T ss_pred cccCCCCCccceeeeecCC-----cceEEEecCcccceEEeccccccce-eeeeccccceEEEE--EcCCCCe-EeecCC
Confidence 2111 23455555543 3467777778888888987765432 222222222 2222 6777764 777888
Q ss_pred CCcEEEEECCC
Q 005498 675 NGNVFCFSTPA 685 (693)
Q Consensus 675 ~G~v~~~~~~~ 685 (693)
+|.+-+|.++.
T Consensus 234 DgtIrlWdLgq 244 (735)
T KOG0308|consen 234 DGTIRLWDLGQ 244 (735)
T ss_pred CceEEeeeccc
Confidence 99999998754
No 108
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.16 E-value=8.6e+02 Score=31.15 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=76.3
Q ss_pred cCCCCCccEEEEeeCCeEEEEeC--CC--ce--eeeecccc----cccccceEEEeecCCCCeEEEEEcCCCcEEEEecC
Q 005498 473 LDGDGNLDILVGTSFGLFYVLDH--HG--KI--REKFPLEM----AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE 542 (693)
Q Consensus 473 lDGDG~~DIvvg~~~G~Lyv~~~--~G--~~--~~~~~~~~----g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~ 542 (693)
+|.+...=+++++.+|.|.+++. ++ ++ ...|.... +..... .+.|...--- -|+++..-..+.+|+.+
T Consensus 1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSG-HLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCC-eEEecCCeeEEEEEecc
Confidence 46666666788888998888873 33 21 11121110 111111 5555543211 13333223345566654
Q ss_pred CCeeeEE-eeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCce---eecceeccCCccccceEEEeccCCCCC
Q 005498 543 GKGIWEQ-HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK---VRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (693)
Q Consensus 543 G~~~W~~-~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~---~~~~~~~~~g~~~s~v~l~DlDGDG~~ 618 (693)
-...-.. ...+........+|+.+ | .-|+++-.+|.+.+|+.+--.. +-.|.-. .-..+++-+-+..-|
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~-g-n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h---~~~~~Iv~~slq~~G-- 1268 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVH-G-NIIAAGFADGSVRVYDRRMAPPDSLVCVYREH---NDVEPIVHLSLQRQG-- 1268 (1387)
T ss_pred cceeEeecccCCCccceeecccccC-C-ceEEEeecCCceEEeecccCCccccceeeccc---CCcccceeEEeecCC--
Confidence 4332221 11111112223356554 2 2255555789999998653221 1111111 111235555665322
Q ss_pred CCCeEEEEEecCCeEEEEcCCC
Q 005498 619 SKGLTIVTTSFDGYLYLIDGPT 640 (693)
Q Consensus 619 dg~lDIvv~s~dG~ly~~dG~~ 640 (693)
.-+||.++.+|.+++++-..
T Consensus 1269 --~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1269 --LGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred --CcceeeeccCCeEEEEeccc
Confidence 23799999999999987554
No 109
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=41.76 E-value=5.2e+02 Score=28.57 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=59.8
Q ss_pred CCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeE-EEEEecCCeEEEEcCCCC-ceeE
Q 005498 568 GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT-IVTTSFDGYLYLIDGPTS-CADV 645 (693)
Q Consensus 568 G~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lD-Ivv~s~dG~ly~~dG~~g-~~~~ 645 (693)
|.+=++++..-|.|++++...++.... +..+|...+.+..-- ..+. |+.++.|-.+.+++-.+. |...
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~--~~ghG~sINeik~~p--------~~~qlvls~SkD~svRlwnI~~~~Cv~V 173 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKN--YRGHGGSINEIKFHP--------DRPQLVLSASKDHSVRLWNIQTDVCVAV 173 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccc--eeccCccchhhhcCC--------CCCcEEEEecCCceEEEEeccCCeEEEE
Confidence 556667777778888888776665432 222222111111100 1122 445556655555553332 3333
Q ss_pred EecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 646 VDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 646 i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
+.--+....-++..|++.||. -|+-+.++-.+..|.++.
T Consensus 174 fGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecCh
Confidence 221123333566779999998 466668999999999884
No 110
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=41.22 E-value=16 Score=36.03 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=16.6
Q ss_pred cCcEEEeecCCCCCcEEEE
Q 005498 385 STPVIADIDNDGVSEMIIA 403 (693)
Q Consensus 385 sspaiaDiDGDG~~DIVv~ 403 (693)
+...++||||||..|+|..
T Consensus 25 ~~~~~~DinGdG~~dlv~~ 43 (175)
T PF12256_consen 25 SQVSVADINGDGTADLVWS 43 (175)
T ss_pred cEEEEEEeCCCCCEEEEEe
Confidence 4678999999999999973
No 111
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=39.87 E-value=4.2e+02 Score=26.87 Aligned_cols=128 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe--CCCceeeeecccc--c
Q 005498 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD--HHGKIREKFPLEM--A 508 (693)
Q Consensus 433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~--~~G~~~~~~~~~~--g 508 (693)
+.++.++.. +++..... ....|--.-++.||+.=++.-+..++|+.|+ ..+..+....... .
T Consensus 115 g~v~~~~~~-~~~~~~~~-------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVAD-------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP 180 (246)
T ss_dssp EEEEEEETT-SEEEEEEE-------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred cceEEECCC-CeEEEEec-------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC
Q ss_pred ccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCccEEEEccC
Q 005498 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLS 578 (693)
Q Consensus 509 ~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~ 578 (693)
.....+--.-+|.+|.. .++....+.+++++.+|+..-...+.......++++ |.....|+|.+..
T Consensus 181 ~~~g~pDG~~vD~~G~l-~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fg---g~~~~~L~vTta~ 246 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNL-WVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFG---GPDGKTLYVTTAR 246 (246)
T ss_dssp SSSCEEEEEEEBTTS-E-EEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEE---STTSSEEEEEEB-
T ss_pred CCCcCCCcceEcCCCCE-EEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEE---CCCCCEEEEEeCC
No 112
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=39.51 E-value=5.4e+02 Score=28.07 Aligned_cols=75 Identities=9% Similarity=0.243 Sum_probs=44.0
Q ss_pred EEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCC
Q 005498 608 LLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (693)
Q Consensus 608 ~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~ 686 (693)
.-.-+..||+ -|++.+..+.+|++++-.|... .+.........++-+=+.-||.. |+.+..+|++++|.....
T Consensus 191 ~~l~FS~dGK-----~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 191 TDLEFSPDGK-----SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eeeEEcCCCC-----EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCC
Confidence 3444555543 4666667788899887777643 22111111112233337778874 556677899999998654
Q ss_pred CC
Q 005498 687 HH 688 (693)
Q Consensus 687 ~~ 688 (693)
++
T Consensus 265 ~~ 266 (311)
T KOG1446|consen 265 KK 266 (311)
T ss_pred cE
Confidence 43
No 113
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.28 E-value=6.5e+02 Score=28.36 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=65.2
Q ss_pred CCCccEEEEcc-C--CcEEEEECCCCceeecceeccCC--ccccceEEEec---cCCCCCCCCeEEEEEecCCeEEEEcC
Q 005498 567 DGHSDVVVPTL-S--GNIYVLSGKDGSKVRPYPYRTHG--RVMNQVLLVDL---TKRGEKSKGLTIVTTSFDGYLYLIDG 638 (693)
Q Consensus 567 DG~~DIvv~s~-~--G~v~~l~~~~G~~~~~~~~~~~g--~~~s~v~l~Dl---DGDG~~dg~lDIvv~s~dG~ly~~dG 638 (693)
|+.+.|+.... . ..+-.|+....+.+|.-...... .+-.|+-..|+ .| +....+++.+..+++.+|+.
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g----~~~~~fat~T~~hqvR~YDt 233 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG----SPNYKFATITRYHQVRLYDT 233 (412)
T ss_pred CCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC----CCCceEEEEecceeEEEecC
Confidence 45566666432 2 23445555455666643322111 12233333332 11 12466888888899999987
Q ss_pred CCCce--eEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCC
Q 005498 639 PTSCA--DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (693)
Q Consensus 639 ~~g~~--~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~ 686 (693)
..+.. ..+++.+.+.+.. + +..+|.. |++++.-|.+..|..++.
T Consensus 234 ~~qRRPV~~fd~~E~~is~~--~-l~p~gn~-Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 234 RHQRRPVAQFDFLENPISST--G-LTPSGNF-IYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred cccCcceeEeccccCcceee--e-ecCCCcE-EEEecccchhheecccCc
Confidence 75533 3566677666533 2 5667776 899999999999987653
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=36.36 E-value=6e+02 Score=27.71 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=65.3
Q ss_pred EEecCCCCCccEEEE-eeCCeEEEEeC---CCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCC
Q 005498 470 VVDLDGDGNLDILVG-TSFGLFYVLDH---HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGK 544 (693)
Q Consensus 470 v~DlDGDG~~DIvvg-~~~G~Lyv~~~---~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~ 544 (693)
++=+|..|. |++. .....|.+|+. +..+...+.+.. .-.......-+-.||+. |++.+..+.+++++. +|.
T Consensus 145 i~AfDp~GL--ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 145 IAAFDPEGL--IFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred ceeECCCCc--EEEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc
Confidence 444555663 2222 22335666663 233333343331 22334555667789987 555556777888877 777
Q ss_pred eeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecce
Q 005498 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYP 596 (693)
Q Consensus 545 ~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~ 596 (693)
..-...........+.-+=+--||.. |+.+..+|.+++|+..+|..+..|.
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEec
Confidence 55433322111111122223344443 5556667999999999998765444
No 115
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=35.63 E-value=12 Score=31.36 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhh-cccCCCCcccccccc
Q 005498 9 NCVLLICLLLFN-SARGGDNSEQNKFRQ 35 (693)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 35 (693)
.++|+|++||++ +++++++..+-+.|.
T Consensus 4 t~vliVavLllt~~~~~~~~~~~~~~~~ 31 (75)
T PF02950_consen 4 TCVLIVAVLLLTTLATADLDGDQPADRP 31 (75)
T ss_dssp ----------------------------
T ss_pred chHHHHHHHHHHHHHhcccccccchhhh
Confidence 577888888888 444444443333333
No 116
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=32.59 E-value=8.5e+02 Score=28.33 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=27.4
Q ss_pred CeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCC
Q 005498 488 GLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEG 543 (693)
Q Consensus 488 G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G 543 (693)
|+||..+-+|+-+.... ..+....-.+|.||+--++ ...|.++.|+.+-
T Consensus 248 GnlYSvdldGkDlrrHT-----nFtdYY~R~~nsDGkrIvF--q~~GdIylydP~t 296 (668)
T COG4946 248 GNLYSVDLDGKDLRRHT-----NFTDYYPRNANSDGKRIVF--QNAGDIYLYDPET 296 (668)
T ss_pred cceEEeccCCchhhhcC-----CchhccccccCCCCcEEEE--ecCCcEEEeCCCc
Confidence 45666666665432211 1223345566889985333 3457788888743
No 117
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=32.28 E-value=5.7e+02 Score=31.64 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCccEEEEee--CCeEEEEe-CCCceeeeecccc-cc---cccceEEEeecCCCCeEEEEEcCCCcEEEEec--CCC-ee
Q 005498 477 GNLDILVGTS--FGLFYVLD-HHGKIREKFPLEM-AE---IQGAVVAADINDDGKIELVTTDTHGNVAAWTA--EGK-GI 546 (693)
Q Consensus 477 G~~DIvvg~~--~G~Lyv~~-~~G~~~~~~~~~~-g~---~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~--~G~-~~ 546 (693)
+...+|+... ...||-++ ..|+.+..|.... +. +...--.+.++.. ..+++-.+..++.++. .|. ..
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e---~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE---QTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC---ceEEEECCCceEEeccCCCCCcee
Confidence 3345555543 34689888 6899887776543 11 1111112222221 3445545556777765 342 33
Q ss_pred eEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEE
Q 005498 547 WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT 626 (693)
Q Consensus 547 W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv 626 (693)
|.....-........+--.++| -|+|++..|.|.+|+. .|+. ...... .+..|+...|+..||+ -++
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~---AKT~lp-~lG~pI~~iDvt~DGk------wil 634 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKR---AKTALP-GLGDPIIGIDVTADGK------WIL 634 (794)
T ss_pred eccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchh---hhhcCC-CCCCCeeEEEecCCCc------EEE
Confidence 4322111111122333344555 4889999999999984 4532 111112 3468999999998877 666
Q ss_pred EecCCeEEEEc
Q 005498 627 TSFDGYLYLID 637 (693)
Q Consensus 627 ~s~dG~ly~~d 637 (693)
++..-||.+++
T Consensus 635 aTc~tyLlLi~ 645 (794)
T PF08553_consen 635 ATCKTYLLLID 645 (794)
T ss_pred EeecceEEEEE
Confidence 66677776653
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=31.13 E-value=5.6e+02 Score=29.92 Aligned_cols=103 Identities=23% Similarity=0.326 Sum_probs=57.7
Q ss_pred EEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeee
Q 005498 470 VVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIW 547 (693)
Q Consensus 470 v~DlDGDG~~DIvvg~~~G~Lyv~~~-~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W 547 (693)
+.+++-|-+.-+ .++.+|.|.+++. +-.....|+-.. -.....|+-.||. -|-.+.-+..|+||+. .|...-
T Consensus 514 ALa~spDakvcF-sccsdGnI~vwDLhnq~~VrqfqGht----DGascIdis~dGt-klWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 514 ALAISPDAKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHT----DGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred hhhcCCccceee-eeccCCcEEEEEcccceeeecccCCC----CCceeEEecCCCc-eeecCCCccceeehhhhhhhhhh
Confidence 445666655433 3467889999884 444444444332 2355778887875 4777777888999976 555433
Q ss_pred EEeeccccc---cCcEEEecCCCCCccEEEEccCCcEEEEEC
Q 005498 548 EQHLKSLVT---QGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (693)
Q Consensus 548 ~~~~~s~~~---~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~ 586 (693)
+..+.+.+. ..+ -+|+ |+|+-.++++.++..
T Consensus 588 qhdF~SQIfSLg~cP-~~dW-------lavGMens~vevlh~ 621 (705)
T KOG0639|consen 588 QHDFSSQIFSLGYCP-TGDW-------LAVGMENSNVEVLHT 621 (705)
T ss_pred hhhhhhhheecccCC-Cccc-------eeeecccCcEEEEec
Confidence 222222111 111 1222 555556777777764
No 119
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.67 E-value=1e+03 Score=28.67 Aligned_cols=141 Identities=14% Similarity=0.234 Sum_probs=74.6
Q ss_pred EEcCCCcEEEEecC-CCe----eeEEee-cccc-c--cCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceecc
Q 005498 529 TTDTHGNVAAWTAE-GKG----IWEQHL-KSLV-T--QGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRT 599 (693)
Q Consensus 529 v~~~~G~v~~~~~~-G~~----~W~~~~-~s~~-~--~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~ 599 (693)
.+.-++.+++|+.+ |.. .+.... .+.. . .++-.-+.|..| ..|+-+...+.+.+|+.++++.+ ...+.
T Consensus 135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~ki--mkLrG 211 (735)
T KOG0308|consen 135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKI--MKLRG 211 (735)
T ss_pred ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccce--eeeec
Confidence 34456788888764 422 122211 1111 1 122234556666 55666667888999999888765 33332
Q ss_pred CCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc-CCCCceeEEecCC-cceeeEEEEeecCCCCccEEEEeeCCc
Q 005498 600 HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID-GPTSCADVVDIGE-TSYSMVLADNVDGGDDLDLIVTTMNGN 677 (693)
Q Consensus 600 ~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~d-G~~g~~~~i~~g~-~~~s~v~~~DlDGDG~lDLvv~s~~G~ 677 (693)
+. .-+.+.=++.|| -.++.++.||.+-+++ |...|...+.... ..|+. +.+ .--.-++.+..+|.
T Consensus 212 HT---dNVr~ll~~dDG-----t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL----~~~-~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 212 HT---DNVRVLLVNDDG-----TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL----QSS-PSFTHVYSGGRDGN 278 (735)
T ss_pred cc---cceEEEEEcCCC-----CeEeecCCCceEEeeeccccceeeeEEeccCceEEE----eeC-CCcceEEecCCCCc
Confidence 21 222223333333 4688999999888887 5555665544332 23331 122 11122555566777
Q ss_pred EEEEECCC
Q 005498 678 VFCFSTPA 685 (693)
Q Consensus 678 v~~~~~~~ 685 (693)
||+-.+.+
T Consensus 279 i~~Tdl~n 286 (735)
T KOG0308|consen 279 IYRTDLRN 286 (735)
T ss_pred EEecccCC
Confidence 77655544
No 120
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=30.41 E-value=85 Score=30.95 Aligned_cols=20 Identities=45% Similarity=0.616 Sum_probs=17.5
Q ss_pred cceEEEeecCCCCeEEEEEc
Q 005498 512 GAVVAADINDDGKIELVTTD 531 (693)
Q Consensus 512 ss~~v~DlDgDG~~DLvv~~ 531 (693)
..+.++|+||||..|+|...
T Consensus 25 ~~~~~~DinGdG~~dlv~~~ 44 (175)
T PF12256_consen 25 SQVSVADINGDGTADLVWSS 44 (175)
T ss_pred cEEEEEEeCCCCCEEEEEec
Confidence 46899999999999999843
No 121
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=30.12 E-value=58 Score=37.09 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=28.7
Q ss_pred cccccceEEEeecCCCCeEEEEEcCCCcEEEE
Q 005498 508 AEIQGAVVAADINDDGKIELVTTDTHGNVAAW 539 (693)
Q Consensus 508 g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~ 539 (693)
.+..+.+..+|+-.||..+|++++.+|.|..|
T Consensus 11 ~s~VA~vv~~DYR~dG~~~lI~csvdGeVrGy 42 (431)
T PF14782_consen 11 SSPVAGVVVADYRMDGKPQLICCSVDGEVRGY 42 (431)
T ss_pred cchhheeeeeccccCCCceEEEEEcCCEEEEe
Confidence 34556799999999999999999999999999
No 122
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=28.42 E-value=7.3e+02 Score=26.25 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=57.2
Q ss_pred cEEEecCCCCCccEEEE-eeCCeEEEEeC--CCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecC--
Q 005498 468 PTVVDLDGDGNLDILVG-TSFGLFYVLDH--HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-- 542 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg-~~~G~Lyv~~~--~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~-- 542 (693)
+...-++.||+. |+++ ...+.+++|+- +|+....-....+ ..+...-++.||+.=++.....+.+.+|+.+
T Consensus 37 ~~~l~~spd~~~-lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 37 VQPMVISPDKRH-LYVGVRPEFRVLSYRIADDGALTFAAESPLP---GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CccEEECCCCCE-EEEEECCCCcEEEEEECCCCceEEeeeecCC---CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 334455667643 3344 34567777663 3443211111111 2344555678887644444456778888663
Q ss_pred CCee-eEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCC
Q 005498 543 GKGI-WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (693)
Q Consensus 543 G~~~-W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~ 588 (693)
|... ...... ....+....++-||+.-++.....+.+.+|+-.+
T Consensus 113 g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 113 GIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 3211 111111 1122333456777866444444567888887644
No 123
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.04 E-value=9.2e+02 Score=30.63 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred cccceEEEEECCCCceEEEee--------ccCCcCcc-ccccccccCcEEEecCCCCCccEEEEeeCCe----EEEEe--
Q 005498 430 YVAGAIVVFNLDTKQVKWTTD--------LDLSTDNA-SFRAYIYSSPTVVDLDGDGNLDILVGTSFGL----FYVLD-- 494 (693)
Q Consensus 430 ~~~G~l~~fd~~tG~i~W~~~--------l~l~~~~~-~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~----Lyv~~-- 494 (693)
..+|.|++|+..+|..++.+. ..+....- ...-++-.+|.++|+=-+|.-=-|+.+.-|. ||+++
T Consensus 589 andGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~g~~G~GG~glyALDVT 668 (1036)
T COG3419 589 ANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAADAYDNGQWRSVLVGGLGAGGRGLYALDVT 668 (1036)
T ss_pred cCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeehhhcCCcceEEEEeecCCCCceeEEEEcc
Q ss_pred --C--CCceeeeecccc----cccccceEEEeecCCCCeEEEEEcCCCc-----------EEEEecCCCeeeEEeec---
Q 005498 495 --H--HGKIREKFPLEM----AEIQGAVVAADINDDGKIELVTTDTHGN-----------VAAWTAEGKGIWEQHLK--- 552 (693)
Q Consensus 495 --~--~G~~~~~~~~~~----g~~~ss~~v~DlDgDG~~DLvv~~~~G~-----------v~~~~~~G~~~W~~~~~--- 552 (693)
. +-+.+|...... |.....+.++-+ .||..-+++++.... +...+..-+..|+....
T Consensus 669 dP~~~~~~~Lw~~~~~d~~~LG~t~gkP~Iv~l-~~gswavl~GNGynS~~n~~al~~~~L~t~~~~~~~~v~~g~~~~~ 747 (1036)
T COG3419 669 DPDFSNSNLLWENNSNDDPDLGYTMGKPRIVPL-HDGSWAVLLGNGYNSPANGAALLVLNLLTLDATRKVPVQSGTGYGA 747 (1036)
T ss_pred CccccCCcchhcccCCCccccccccCCCeEEEc-CCCceEEEEccCCCCCCCCcceEEEEeecCCcceeEEEeccCCccc
Q ss_pred -------cccccCcEEEecCCCCCccEEEEcc-CCcEEEEECCCCceeecceec
Q 005498 553 -------SLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDGSKVRPYPYR 598 (693)
Q Consensus 553 -------s~~~~~~~vgDlDGDG~~DIvv~s~-~G~v~~l~~~~G~~~~~~~~~ 598 (693)
......+.+.|+|+||..|.+.+.. .|++|.|+.. |.....|+..
T Consensus 748 g~~P~~~~~g~~~~~~~d~~~dG~vd~aYAGDl~GnlWRFdLs-g~~~n~W~va 800 (1036)
T COG3419 748 GVSPVCVGVGGLDVAVLDLDGDGIVDYAYAGDLGGNLWRFDLS-GNAPNSWTVA 800 (1036)
T ss_pred cccCccccccccccceeecCCCceEEEEEeeccCCcEEEEEec-CCCCCCccee
No 124
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=26.49 E-value=8.5e+02 Score=26.35 Aligned_cols=210 Identities=18% Similarity=0.154 Sum_probs=102.1
Q ss_pred cCcEEEecCCCCCccEEEEeeCCeEEEEe--CCCceeeeeccc--c--c-----ccccceEEEeecCCCCeEEEEEcCCC
Q 005498 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLD--HHGKIREKFPLE--M--A-----EIQGAVVAADINDDGKIELVTTDTHG 534 (693)
Q Consensus 466 ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~--~~G~~~~~~~~~--~--g-----~~~ss~~v~DlDgDG~~DLvv~~~~G 534 (693)
..|.-+-++.||+.=++.....|.+.++. .+|......... . + .....+..+-++.||+.=++.--...
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 35667778888876666555677777776 346654321110 0 1 11233555667888876555444456
Q ss_pred cEEEEecCC-C--eeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECC--CCceeecceeccCC-cc--ccc
Q 005498 535 NVAAWTAEG-K--GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK--DGSKVRPYPYRTHG-RV--MNQ 606 (693)
Q Consensus 535 ~v~~~~~~G-~--~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~--~G~~~~~~~~~~~g-~~--~s~ 606 (693)
.++.|+.+. . ..-...+.-.....|.-.-|.-||+.=.++...++.|..|+-. +|.+.......... .. ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 777776632 2 2222222223444555555777777744444456666666543 56543322222110 01 111
Q ss_pred eEEEeccCCCCCCCCeEEEEEe-cCCeEEEE--cCCCCceeE---EecCCcceeeEEEEeecCCCCccEEEEe-eCCcEE
Q 005498 607 VLLVDLTKRGEKSKGLTIVTTS-FDGYLYLI--DGPTSCADV---VDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVF 679 (693)
Q Consensus 607 v~l~DlDGDG~~dg~lDIvv~s-~dG~ly~~--dG~~g~~~~---i~~g~~~~s~v~~~DlDGDG~lDLvv~s-~~G~v~ 679 (693)
..-.-+..||+ -|++.+ ..+.+.+| +..++.... +..+.. .|.-.-|+.||+. |+|++ ..+.|.
T Consensus 247 ~~~i~ispdg~-----~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~-l~Va~~~s~~v~ 317 (345)
T PF10282_consen 247 PAEIAISPDGR-----FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK---FPRHFAFSPDGRY-LYVANQDSNTVS 317 (345)
T ss_dssp EEEEEE-TTSS-----EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS---SEEEEEE-TTSSE-EEEEETTTTEEE
T ss_pred ceeEEEecCCC-----EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC---CccEEEEeCCCCE-EEEEecCCCeEE
Confidence 22223444433 345544 33444444 445555443 333221 1222237888886 55554 566888
Q ss_pred EEECC
Q 005498 680 CFSTP 684 (693)
Q Consensus 680 ~~~~~ 684 (693)
+|+..
T Consensus 318 vf~~d 322 (345)
T PF10282_consen 318 VFDID 322 (345)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88753
No 125
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=26.46 E-value=9.3e+02 Score=26.80 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=47.1
Q ss_pred EEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCcccc
Q 005498 527 LVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMN 605 (693)
Q Consensus 527 Lvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s 605 (693)
++++-.+|.+.+|+. +|+..=+..........+.+.+ -|+-.-|+.++.+|.|.+|+.+.-.....+.+... -..
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~--~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~--~~~ 118 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFIS--CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ--SGT 118 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEec--CCCCCeeEEeccCCeEEEEEeecchhhhheeccCC--CCC
Confidence 556667888988876 4443323232223333455553 23444466677899999999765444333332221 245
Q ss_pred ceEEEecc
Q 005498 606 QVLLVDLT 613 (693)
Q Consensus 606 ~v~l~DlD 613 (693)
|....|.|
T Consensus 119 ~f~~ld~n 126 (376)
T KOG1188|consen 119 PFICLDLN 126 (376)
T ss_pred cceEeecc
Confidence 66677775
No 126
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=26.08 E-value=92 Score=35.52 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=26.9
Q ss_pred cccCcEEEecCCCCCccEEEEeeCCeEEEE
Q 005498 464 IYSSPTVVDLDGDGNLDILVGTSFGLFYVL 493 (693)
Q Consensus 464 ~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~ 493 (693)
..++++.+|+-.||..++|+++.+|.+.-|
T Consensus 13 ~VA~vv~~DYR~dG~~~lI~csvdGeVrGy 42 (431)
T PF14782_consen 13 PVAGVVVADYRMDGKPQLICCSVDGEVRGY 42 (431)
T ss_pred hhheeeeeccccCCCceEEEEEcCCEEEEe
Confidence 346788999999999999999999999888
No 127
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=25.96 E-value=1e+03 Score=27.02 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=63.4
Q ss_pred eEEEeecCCCCeEEEEEcCCCcEEEEec-CCCe---------eeEEeeccccccCcEEEecCCCCCccEEEEccCCcEEE
Q 005498 514 VVAADINDDGKIELVTTDTHGNVAAWTA-EGKG---------IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYV 583 (693)
Q Consensus 514 ~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~---------~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~ 583 (693)
+...++--||+. |+.+..+|.+.+|+. +|.. .|-..+. . .-.-++-.++ -++-++.+|.+.+
T Consensus 160 VlcvawsPDgk~-iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~La---w---ep~hl~p~~r-~las~skDg~vrI 231 (480)
T KOG0271|consen 160 VLCVAWSPDGKK-IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALA---W---EPLHLVPPCR-RLASSSKDGSVRI 231 (480)
T ss_pred EEEEEECCCcch-hhccccCCeEEEecCCCCCcccccccCcccceeEEe---e---cccccCCCcc-ceecccCCCCEEE
Confidence 556667778864 667778899999986 3332 2322211 0 0122223333 2334445788888
Q ss_pred EECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCC
Q 005498 584 LSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS 641 (693)
Q Consensus 584 l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g 641 (693)
|+-..|+.+ +.. . .-..++...-.-|+|. |+.++.|+.+-+++...|
T Consensus 232 Wd~~~~~~~--~~l--s-gHT~~VTCvrwGG~gl------iySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 232 WDTKLGTCV--RTL--S-GHTASVTCVRWGGEGL------IYSGSQDRTIKVWRALDG 278 (480)
T ss_pred EEccCceEE--EEe--c-cCccceEEEEEcCCce------EEecCCCceEEEEEccch
Confidence 887655544 111 1 2246777777755544 788888888777766654
No 128
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.73 E-value=9.3e+02 Score=25.87 Aligned_cols=119 Identities=14% Similarity=0.095 Sum_probs=57.7
Q ss_pred cEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEE-EEEecCCeEEEEc
Q 005498 559 PSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI-VTTSFDGYLYLID 637 (693)
Q Consensus 559 ~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDI-vv~s~dG~ly~~d 637 (693)
+...|.|---+.-++..+.++.|-+|...-++-+..|. .+.. -+.-+-+. .....+ ...+.+|++.+++
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~--gh~~---~Iy~a~~s-----p~~~nlfas~Sgd~~l~lwd 176 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN--GHNS---CIYQAAFS-----PHIPNLFASASGDGTLRLWD 176 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeec--CCcc---EEEEEecC-----CCCCCeEEEccCCceEEEEE
Confidence 44566665555557777788988888875444332222 1111 11111111 011223 3445677766665
Q ss_pred CCC-CceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCCCCcc
Q 005498 638 GPT-SCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPL 690 (693)
Q Consensus 638 G~~-g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~~~p~ 690 (693)
-+. |....|.... +-++.-|.+.=-.-=|+.+..++.|++|...+=-.|+
T Consensus 177 vr~~gk~~~i~ah~---~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 177 VRSPGKFMSIEAHN---SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred ecCCCceeEEEecc---ceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 322 2211222211 1223345555333335555678888888876544444
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=23.68 E-value=9.9e+02 Score=26.16 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=72.8
Q ss_pred ccEEEEeeCCeEEEEeCCCcee-eeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEEeecccccc
Q 005498 479 LDILVGTSFGLFYVLDHHGKIR-EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQ 557 (693)
Q Consensus 479 ~DIvvg~~~G~Lyv~~~~G~~~-~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~~~~s~~~~ 557 (693)
.+|++++-+|.|.+|+.....+ -.+.. +...-.-+++| ...+++++.+|.+..++.++..............
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~d-----~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ 98 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFAD-----ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIR 98 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheec--CCceeeeeccC-----CceEEEeccCceEEEEEecCCcceeeccCCCceE
Confidence 4788888889888887544311 11111 11011123333 3468888888999988875544332211111111
Q ss_pred CcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 005498 558 GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (693)
Q Consensus 558 ~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~d 637 (693)
.+... -+.-.|+.++++..|-+|+...-.... .+ .....+...|+.|+ -|++++.+-.+.+|+
T Consensus 99 ci~~~----~~~~~vIsgsWD~~ik~wD~R~~~~~~--~~----d~~kkVy~~~v~g~-------~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 99 CIEYS----YEVGCVISGSWDKTIKFWDPRNKVVVG--TF----DQGKKVYCMDVSGN-------RLVVGTSDRKVLIYD 161 (323)
T ss_pred EEEee----ccCCeEEEcccCccEEEEecccccccc--cc----ccCceEEEEeccCC-------EEEEeecCceEEEEE
Confidence 11111 122346667788888899876421111 11 11235677788653 477777777777776
Q ss_pred CC
Q 005498 638 GP 639 (693)
Q Consensus 638 G~ 639 (693)
-.
T Consensus 162 LR 163 (323)
T KOG1036|consen 162 LR 163 (323)
T ss_pred cc
Confidence 44
No 130
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=23.50 E-value=5.5e+02 Score=23.13 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=27.2
Q ss_pred eeCCeEEEEeCCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEE
Q 005498 485 TSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQ 549 (693)
Q Consensus 485 ~~~G~Lyv~~~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~ 549 (693)
..+|.|++++.+|..+|..... + ......+-+. .+|++.++..+|..+|+.
T Consensus 62 ~~dGnLvl~~~~g~~vW~S~~~-~--~~~~~~~~L~-----------ddGnlvl~~~~~~~~W~S 112 (116)
T cd00028 62 QSDGNLVIYDGSGTVVWSSNTT-R--VNGNYVLVLL-----------DDGNLVLYDSDGNFLWQS 112 (116)
T ss_pred ecCCCeEEEcCCCcEEEEeccc-C--CCCceEEEEe-----------CCCCEEEECCCCCEEEcC
Confidence 3456777777777777653221 1 1112222233 445566666667777863
No 131
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.44 E-value=1.4e+03 Score=27.88 Aligned_cols=202 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred cCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEe
Q 005498 473 LDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQH 550 (693)
Q Consensus 473 lDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~ 550 (693)
++.+| +++++.....+-..+ .+|... .+.....-...+...++.-| ..=|+.+....-+..|.. .| ...+.
T Consensus 27 ~s~nG--~~L~t~~~d~Vi~idv~t~~~~--l~s~~~ed~d~ita~~l~~d-~~~L~~a~rs~llrv~~L~tg--k~irs 99 (775)
T KOG0319|consen 27 WSSNG--QHLYTACGDRVIIIDVATGSIA--LPSGSNEDEDEITALALTPD-EEVLVTASRSQLLRVWSLPTG--KLIRS 99 (775)
T ss_pred ECCCC--CEEEEecCceEEEEEccCCcee--cccCCccchhhhheeeecCC-ccEEEEeeccceEEEEEcccc--hHhHh
Q ss_pred eccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecC
Q 005498 551 LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFD 630 (693)
Q Consensus 551 ~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~d 630 (693)
........+....+++-| .=+..+..++.+.+|+-..+.....|. ....++...+|.++ -....|+.+..+
T Consensus 100 wKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fk-----G~gGvVssl~F~~~---~~~~lL~sg~~D 170 (775)
T KOG0319|consen 100 WKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFK-----GHGGVVSSLLFHPH---WNRWLLASGATD 170 (775)
T ss_pred HhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEec-----CCCceEEEEEeCCc---cchhheeecCCC
Q ss_pred CeEEEEcCCCCceeEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCCCCCcccCC
Q 005498 631 GYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAG 693 (693)
Q Consensus 631 G~ly~~dG~~g~~~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~~~~p~k~~ 693 (693)
+.+++++....+. -+.+-....+.+..-++-.| ...++....+..+++|.+ -.|.-++.+
T Consensus 171 ~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~-~~~~~l~~l 230 (775)
T KOG0319|consen 171 GTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDL-VQYKKLKTL 230 (775)
T ss_pred ceEEEEEcccCch-HHHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeeh-hhhhhhhee
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=6.6e+02 Score=31.89 Aligned_cols=205 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCCCCccEEEEee-CCeEEEEeCCCceeeeecccc---cccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCeeeEE
Q 005498 474 DGDGNLDILVGTS-FGLFYVLDHHGKIREKFPLEM---AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQ 549 (693)
Q Consensus 474 DGDG~~DIvvg~~-~G~Lyv~~~~G~~~~~~~~~~---g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~W~~ 549 (693)
.+++...||+|+. +|.|..|+.+--....-...+ ....+.+...|||.....-|..+..+|.+++|+.+--..=-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~ 154 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT 154 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC
Q ss_pred eeccccccCcEEEecCCCCCccEEEEccCCcEEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEec
Q 005498 550 HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF 629 (693)
Q Consensus 550 ~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~ 629 (693)
.........+.+.=+|.--.-=+.-++.+|+..+|+-+..+.+-.+...... ..+...-++.|.. --|++++.
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~---~~~S~l~WhP~~a----Tql~~As~ 227 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR---MHCSVLAWHPDHA----TQLLVASG 227 (1049)
T ss_pred CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc---cceeeeeeCCCCc----eeeeeecC
Q ss_pred CCeEEEEc-CCCCcee-EEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 630 DGYLYLID-GPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 630 dG~ly~~d-G~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
+...-++. ....+.. ++.+.+.....++..+...-+.-=|+-+..+++++||..++
T Consensus 228 dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
No 133
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.28 E-value=1.5e+03 Score=27.84 Aligned_cols=152 Identities=15% Similarity=0.234 Sum_probs=78.3
Q ss_pred ccceEEEeecCCCCeEEEEEcCCCcEEEEecCCCee---eEEeeccccccCcEEEecCCCCCccEEEEccCCcEEEEECC
Q 005498 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI---WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (693)
Q Consensus 511 ~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~~~---W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~v~~l~~~ 587 (693)
...+...++-.||.. |+.+..+|+|.+|+..-... |+.+.. +++..-+-.+|.. |+-.+-+|.|.+|+-+
T Consensus 350 ~~~i~~l~YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~-llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQL-IATGAEDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNV-LLSSSLDGTVRAWDLK 422 (893)
T ss_pred ccceeeEEECCCCcE-EEeccCCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCE-EEEeecCCeEEeeeec
Confidence 445777788888864 67777889999998754333 333332 2222222233332 5555668999999876
Q ss_pred CCceeecceeccCCccccceEEEeccCCCCCCCCeEEEE-EecCCe-EEEEcCCCCceeEEec-CCcceeeEEEEeecCC
Q 005498 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT-TSFDGY-LYLIDGPTSCADVVDI-GETSYSMVLADNVDGG 664 (693)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv-~s~dG~-ly~~dG~~g~~~~i~~-g~~~~s~v~~~DlDGD 664 (693)
...-...|..+.. +.-.-+.+|-.| +||+ ++.+.+ ++++.-.+|....+-- .+++.+.. -|+-+
T Consensus 423 RYrNfRTft~P~p--~QfscvavD~sG--------elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l---~f~~~ 489 (893)
T KOG0291|consen 423 RYRNFRTFTSPEP--IQFSCVAVDPSG--------ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL---SFSPD 489 (893)
T ss_pred ccceeeeecCCCc--eeeeEEEEcCCC--------CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee---EEccc
Confidence 5543322222211 111223344433 2444 444443 5556555555432222 23333322 15555
Q ss_pred CCccEEEEeeCCcEEEEEC
Q 005498 665 DDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 665 G~lDLvv~s~~G~v~~~~~ 683 (693)
|.. |+-++.+-.|-.|..
T Consensus 490 ~~~-LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 490 GSL-LASGSWDKTVRIWDI 507 (893)
T ss_pred cCe-EEeccccceEEEEEe
Confidence 542 445566777777764
No 134
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=22.07 E-value=1.1e+03 Score=26.16 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=42.6
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeecccc--cccccceEEEeecCCCCeEEEEEcCCCcEEEEecCC
Q 005498 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEM--AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEG 543 (693)
Q Consensus 468 p~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~--g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G 543 (693)
+-.++++-||+.-+++--...++++|+ .+|.+....+... |....-++ |-.+|+.=-++.--++.|.+|.-++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~---FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV---FHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE---EcCCCcEEEEEeccCCEEEEEEEcC
Confidence 567888888865444333334788887 4666543322222 33322233 4567777667766677787776543
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=21.82 E-value=8.4e+02 Score=27.50 Aligned_cols=142 Identities=12% Similarity=0.174 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCeeeEEeeccccccCcEEEecCCCCCcc--EEEEccCCcEEEEECCCCceeecceeccCCccccceEE
Q 005498 532 THGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSD--VVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLL 609 (693)
Q Consensus 532 ~~G~v~~~~~~G~~~W~~~~~s~~~~~~~vgDlDGDG~~D--Ivv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~s~v~l 609 (693)
-...++.+...- +.|...-.....+.-.+-||-=-..-+ +.-++.+|.|.+|+-+.+......... ...+-+-+
T Consensus 232 c~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k---Ah~sDVNV 307 (440)
T KOG0302|consen 232 CVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK---AHNSDVNV 307 (440)
T ss_pred cccceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee---ccCCceee
Confidence 334556665533 567655443334444555553322223 233446889999987766332222221 11235667
Q ss_pred EeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce----eEEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEECCC
Q 005498 610 VDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA----DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (693)
Q Consensus 610 ~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~----~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~~~ 685 (693)
.++|++ -.-|+.+..+|.+.+++-+.-.. ..+.....+..+ ......-...|.++..+.++.+|.+..
T Consensus 308 ISWnr~-----~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts---ieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRR-----EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS---IEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEccCC-----cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE---EEeccccCceEEeccCCCcEEEEEeec
Confidence 788754 12466777889888876543221 123333333222 234444445577777888888888653
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.71 E-value=1e+03 Score=25.36 Aligned_cols=150 Identities=13% Similarity=0.182 Sum_probs=67.3
Q ss_pred ccccccceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCC-CccEEEEeeCCeEEEEeCCCceeeeecc
Q 005498 427 IGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDG-NLDILVGTSFGLFYVLDHHGKIREKFPL 505 (693)
Q Consensus 427 i~~~~~G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG-~~DIvvg~~~G~Lyv~~~~G~~~~~~~~ 505 (693)
..-+.++.++++...+| +|.+......-. +++..+.+--.+ -+-|.+++++|.+-+++.+....|..+.
T Consensus 74 AScsYDgkVIiWke~~g--~w~k~~e~~~h~--------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENG--RWTKAYEHAAHS--------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred eEeecCceEEEEecCCC--chhhhhhhhhhc--------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 33445678888888777 676644322110 011111111111 1335556778888777754442232111
Q ss_pred c-c----c--ccccceEE---EeecCC---CCeEEEEEcCCCcEEEEecCCCeeeEEe--eccc--cccCcEEEecCCCC
Q 005498 506 E-M----A--EIQGAVVA---ADINDD---GKIELVTTDTHGNVAAWTAEGKGIWEQH--LKSL--VTQGPSIGDVDGDG 568 (693)
Q Consensus 506 ~-~----g--~~~ss~~v---~DlDgD---G~~DLvv~~~~G~v~~~~~~G~~~W~~~--~~s~--~~~~~~vgDlDGDG 568 (693)
. . | +....++. ..++.- +..-++.+.-+..|.+|..+.. .|... +... -...++.+=-.|-+
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCC
Confidence 0 0 1 11111110 111111 1223566666666777765332 55422 1110 01122222223345
Q ss_pred CccEEEEccCCcEEEEECC
Q 005498 569 HSDVVVPTLSGNIYVLSGK 587 (693)
Q Consensus 569 ~~DIvv~s~~G~v~~l~~~ 587 (693)
+.-|+-++.+|.+++|...
T Consensus 223 ~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ceeeEEecCCCcEEEEEec
Confidence 5567777788999888853
No 137
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=20.64 E-value=1e+03 Score=25.14 Aligned_cols=205 Identities=13% Similarity=0.097 Sum_probs=96.6
Q ss_pred CcEEEecCCCCCccEEEEeeCCeEEEEeC--CCceeeeecccccccccceEEEeecCCCCeEEEEEcCCCcEEEEecCCC
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDH--HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGK 544 (693)
Q Consensus 467 sp~v~DlDGDG~~DIvvg~~~G~Lyv~~~--~G~~~~~~~~~~g~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~~G~ 544 (693)
.|..+-++.||+.=++.....+.+.+|+- +|..........+ ...+....++.||+.-++.....+.+.+|+.+..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 35556677777644443334667777763 3432211111001 1123444567888776666656688888876432
Q ss_pred eeeEEe----eccccccCcEEEecCCCCCccEEEEc-cCCcEEEEECC--CCceeecceeccC-Cccc--cceEEEeccC
Q 005498 545 GIWEQH----LKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYVLSGK--DGSKVRPYPYRTH-GRVM--NQVLLVDLTK 614 (693)
Q Consensus 545 ~~W~~~----~~s~~~~~~~vgDlDGDG~~DIvv~s-~~G~v~~l~~~--~G~~~~~~~~~~~-g~~~--s~v~l~DlDG 614 (693)
+..... ........+.-..|..||+. +++++ .++.+.+|+-. +|++......... .... ..+.-.-++.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~-lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQY-AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCE-EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 222110 01112233444566777765 44444 36777777654 3443221111110 0000 1111123444
Q ss_pred CCCCCCCeEEEEEec-CCeEEEEcC--CCCce---eEEecCCcceeeEEEEeecCCCCccEEEEe-eCCcEEEEECC
Q 005498 615 RGEKSKGLTIVTTSF-DGYLYLIDG--PTSCA---DVVDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTP 684 (693)
Q Consensus 615 DG~~dg~lDIvv~s~-dG~ly~~dG--~~g~~---~~i~~g~~~~s~v~~~DlDGDG~lDLvv~s-~~G~v~~~~~~ 684 (693)
||+ -+++++. .+.+.+|+- ..+.. ..+..+..+.. .-++.||+. |++++ .++.+.+|+..
T Consensus 238 dg~-----~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~----~~~~~dg~~-l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGR-----HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRG----FNIDHSGKY-LIAAGQKSHHISVYEID 304 (330)
T ss_pred CCC-----EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCc----eEECCCCCE-EEEEEccCCcEEEEEEc
Confidence 332 3555543 455555542 22211 12223322222 237888875 66665 47889998764
No 138
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=1.5e+03 Score=27.23 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=74.4
Q ss_pred EEEEcCCCcEEEEecCCCe-eeEEeeccccccCcEEEecCCCCCcc-EEEEccCCcEEEEECCCCceeecceeccCCccc
Q 005498 527 LVTTDTHGNVAAWTAEGKG-IWEQHLKSLVTQGPSIGDVDGDGHSD-VVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVM 604 (693)
Q Consensus 527 Lvv~~~~G~v~~~~~~G~~-~W~~~~~s~~~~~~~vgDlDGDG~~D-Ivv~s~~G~v~~l~~~~G~~~~~~~~~~~g~~~ 604 (693)
++.+-.+|.|.+|+-+-.. .-...+......+..+. ++.+ |++++.+..|.+|+-.++..+..|.-+. ...
T Consensus 28 ~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfi-----aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~--DyI 100 (794)
T KOG0276|consen 28 ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI-----ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS--DYI 100 (794)
T ss_pred EEEeeecCeeEEEecccceeeeeeeecccchhhheee-----eccceEEEecCCceEEEEecccceeeEEeeccc--cce
Confidence 4555567778777663322 22222222212222222 2444 5556678889999887887665554332 111
Q ss_pred cceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecCCcceeeEEEEeecCCCCccEEEEeeCCcEEEEEC
Q 005498 605 NQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 605 s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g~~~~s~v~~~DlDGDG~lDLvv~s~~G~v~~~~~ 683 (693)
..+.+- - ..+-+++++.|-.+-+++-...+.- +.--|-..|.|-++ ||.....-++-++-++.|-+|++
T Consensus 101 R~iavH-P-------t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~--fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 101 RSIAVH-P-------TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA--FNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred eeeeec-C-------CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE--ecCCCccceeeeeccccEEEEEc
Confidence 111110 0 1133444444444444443333222 22223344555544 67666666788889999999999
Q ss_pred CCCCC
Q 005498 684 PAPHH 688 (693)
Q Consensus 684 ~~~~~ 688 (693)
++|+.
T Consensus 171 gs~~~ 175 (794)
T KOG0276|consen 171 GSPHP 175 (794)
T ss_pred CCCCC
Confidence 87653
Done!