Query 005498
Match_columns 693
No_of_seqs 261 out of 2121
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 18:41:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005498.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2004-2008//hhsearch_pdb/005498hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bwr_A Psathyrella velutina le 1.0 1 1 172.7 22.4 208 467-683 117-365 (401)
2 4a7k_A Aldos-2-ulose dehydrata 1.0 1 1 164.3 27.5 161 389-578 222-415 (900)
3 2bwr_A Psathyrella velutina le 1.0 1 1 163.7 20.6 248 386-671 117-397 (401)
4 4a7k_A Aldos-2-ulose dehydrata 1.0 1 1 155.3 23.5 151 470-629 222-414 (900)
5 2zux_A YESW protein; beta-prop 1.0 1 1 141.2 29.9 248 386-687 269-534 (591)
6 2zux_A YESW protein; beta-prop 1.0 1 1 140.3 35.5 195 383-639 324-531 (591)
7 2zuy_A YESX protein; beta-prop 1.0 1 1 135.7 29.4 256 386-686 273-554 (620)
8 2zuy_A YESX protein; beta-prop 1.0 1 1 130.3 36.6 203 383-639 328-552 (620)
9 3ije_A Integrin alpha-V; integ 1.0 1 1 128.8 15.7 175 385-587 224-438 (967)
10 3ije_A Integrin alpha-V; integ 1.0 1 1 125.4 16.9 140 385-541 278-437 (967)
No 1
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=1.00 E-value=1 Score=172.74 Aligned_cols=208 Identities=15% Similarity=0.128 Sum_probs=99.5
Q ss_pred CCEEEECCCCCCCCEEEEEECCEEEEEECCCCEEEEECCC--CC--------CCCCCEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 7299943799972099996098599993799431000012--24--------4102049996239997489997389939
Q 005498 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLE--MA--------EIQGAVVAADINDDGKIELVTTDTHGNV 536 (693)
Q Consensus 467 spavaDlDgDG~~DIiVg~~~G~lyv~~~~G~~~~~~~~~--~g--------~~~s~~~v~DiDgDG~~DIvv~~~~G~v 536 (693)
.++++|+|+||++||+.. ..+.+++|.++|...+..+.. .. .....+.++|+|+||.+||++.. .+.+
T Consensus 117 ~~~~~D~dgDG~~Dl~~~-~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~~-~~~~ 194 (401)
T 2bwr_A 117 IRFMADLRKTGRADIVGF-GDGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGFG-ENQV 194 (401)
T ss_dssp EEEEECCSSSSSCEEEEE-CSSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEEC-SSCE
T ss_pred EEEEECCCCCCCCCEEEE-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEC-CCCE
T ss_conf 147434799998677898-89978999968887302650203676546764457760588871799983578978-9948
Q ss_pred EEEECCCCEEEEEEEC--CCC----------CCCCEEEECCCCCCCCEEEECCCCCEEEEECC-CCCEEECCEECCCC--
Q ss_conf 9994489700598002--444----------46859992279998229999129929999889-99645041101478--
Q 005498 537 AAWTAEGKGIWEQHLK--SLV----------TQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK-DGSKVRPYPYRTHG-- 601 (693)
Q Consensus 537 ~~~~~~G~~~W~~~~~--s~~----------~~sv~vgDiDGDG~~DIvv~s~sG~i~~l~~~-~G~~~~~~~~~~~g-- 601 (693)
++|.++|.+.|..... ... ...+.++|+||||++||++... +.+++|.+. +|.+..........
T Consensus 195 ~~~~n~g~g~f~~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~~-~~~~~~~n~g~g~f~~~~~~~~~~~~ 273 (401)
T 2bwr_A 195 YIARNSGNGTFQPAQAVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFGV-AGVYTSLNNGNGTFGAVNLVLKDFGV 273 (401)
T ss_dssp EEECBCSSSCBCCCEEEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEECS-SSEEEECBCSSSCBCCCEEEESCSSG
T ss_pred EEEEECCCCCEECCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECC-CCEEEEEECCCCCCCCCEECCCCCCC
T ss_conf 99996898723132363156664767763378515515769999805899779-95999970798502685231467666
Q ss_pred -----CCCCCEEEEECCCCCCCCCCEEEEEEECCCEEEEECCC--CCCEEEEE------CCCC---CEEEEEEEEECCCC
Q ss_conf -----31012299822697787998479999059849999099--98525775------0896---11108999402899
Q 005498 602 -----RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGP--TSCADVVD------IGET---SYSMVLADNVDGGD 665 (693)
Q Consensus 602 -----~~~s~v~l~DldGDG~~dg~~DIvv~s~dG~ly~~dg~--~g~~~~i~------~g~~---~~s~v~v~DlDGDG 665 (693)
....++.++|+||||. +||++.. .+.++++.+. ..+..... .+.. ....+.++|+|+||
T Consensus 274 ~~gw~~~~~~~~~~D~dgDG~----~Dlv~~~-~~~~~~~~n~g~g~f~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG 348 (401)
T 2bwr_A 274 NSGWRVEKHVRCVSSLTNKKV----GDIIGFG-DAGVYVALNNGNGTFGPVKRVIDNFGYNQGWRVDKHPRFVVDLTGDG 348 (401)
T ss_dssp GGTCCTTTCEEEEECCSTTCS----CEEEEEC-SSSEEEECBCSSSCBCCCEEEESCSSGGGTCCTTTCCEEEECSSSSS
T ss_pred CCCCCCCCCCCEEEECCCCCC----CCEEEEC-CCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 776324576216686799997----1189976-99099996589864567502104655577844566455547158999
Q ss_pred CCCEEEEEECCCEEEEEC
Q ss_conf 842999960891999977
Q 005498 666 DLDLIVTTMNGNVFCFST 683 (693)
Q Consensus 666 ~~DLIv~~~dG~v~~~~~ 683 (693)
++||++.. .+.+++|..
T Consensus 349 ~~Dlv~~~-~~~~~~~~n 365 (401)
T 2bwr_A 349 CADIVGFG-ENSVWACMN 365 (401)
T ss_dssp SCEEEEEC-SSCEEEEEE
T ss_pred CCCEEEEC-CCCEEEEEE
T ss_conf 73089988-995899996
No 2
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=1.00 E-value=1 Score=164.32 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=94.3
Q ss_pred EEEECCC-CCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCC-CCC-CCCCCCC
Q ss_conf 9962189-978689982016742122188777532100012112544999977999167776026886-765-5554322
Q 005498 389 IADIDND-GVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLST-DNA-SFRAYIY 465 (693)
Q Consensus 389 iaDiDGD-G~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~i~W~~~l~l~~-~~~-~~~~~~~ 465 (693)
++|+||| |+.||+++... +++.|...++ .|........ ... .......
T Consensus 222 aGDINGD~G~dDILVASkE---------------------------GV~wf~~~dG--~Wk~~~Ig~G~as~~~~d~~Ga 272 (900)
T 4a7k_A 222 AAETDGEMRFDQIILAGRD---------------------------GVDCLWYDGA--RWQRHLVGTGLPEERGDPYWGA 272 (900)
T ss_dssp GGGGTTSCSSCEEEEEETT---------------------------EEEEEEECSS--CEEEEEEECCBCCCTTCCCCBC
T ss_pred CCCCCCCCCCCEEEEECCC---------------------------CCEEEEECCC--CCEEEECCCCCCCCCCCCCCCC
T ss_conf 3454588897539997488---------------------------8589993899--8378882578743345677886
Q ss_pred CCCEEEECCCCCCCCEEEEEE--CCEEEEEECCCCE-------EEEE-CCCC--------CCCCCCEEEEEECCCCCEEE
Q ss_conf 472999437999720999960--9859999379943-------1000-0122--------44102049996239997489
Q 005498 466 SSPTVVDLDGDGNLDILVGTS--FGLFYVLDHHGKI-------REKF-PLEM--------AEIQGAVVAADINDDGKIEL 527 (693)
Q Consensus 466 sspavaDlDgDG~~DIiVg~~--~G~lyv~~~~G~~-------~~~~-~~~~--------g~~~s~~~v~DiDgDG~~DI 527 (693)
+.+.++|+++||..+|.+... .+.+.+|...+.. .|.. .+.. ....+.+.++|+||||..||
T Consensus 273 gDIavGDLdGDG~deIaTIEPfHGd~VaVYt~~~ggp~g~~~~~WkrhVId~~g~~~e~~~~fgHaL~~gDldGDG~~DI 352 (900)
T 4a7k_A 273 GSAAVGRVGDDYAGYICSAEAFHGNTVSVYTKPAGSPTGIVRAEWTRHVLDVFGPLNGKHTGSIHQVVCADIDGDGEDEF 352 (900)
T ss_dssp SEEEEEEETTEEEEEEEEEESTTCSEEEEEECCTTCCSSSTTSCCEEEEEEECCCCCTTSCCSEEEEEEECTTSSSBCEE
T ss_pred CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCE
T ss_conf 52489972798742599963776998999978898755545554103540246766534467740689996289986448
Q ss_pred EEECCCCC--------EEEEEC--CCCEEEEEEEC-CCCCCCCEEEECCCCC-CCCEEEECCC
Q ss_conf 99738993--------999944--89700598002-4444685999227999-8229999129
Q 005498 528 VTTDTHGN--------VAAWTA--EGKGIWEQHLK-SLVTQGPSIGDVDGDG-HSDVVVPTLS 578 (693)
Q Consensus 528 vv~~~~G~--------v~~~~~--~G~~~W~~~~~-s~~~~sv~vgDiDGDG-~~DIvv~s~s 578 (693)
+++...+. +++|.. .+...|..... ......+.++|+|||| ++||++.+++
T Consensus 353 VvG~R~~~~~D~~~~gL~~Y~~~D~g~GsF~~~vID~g~~~~v~aaDLDGDG~dlDIV~asy~ 415 (900)
T 4a7k_A 353 LVAMMGADPPDFQRTGVWCYKLVDRTNMKFSKTKVSSVSAGRIATANFHSQGSEVDIATISYS 415 (900)
T ss_dssp EEEEECCSSCCGGGEEEEEEEEEETTTTEEEEEEEECSCCSEEEEECCSSSSSCCEEEEECCB
T ss_pred EEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEECC
T ss_conf 999457877667754399999734889957789980797224788515789972448996136
No 3
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=1.00 E-value=1 Score=163.68 Aligned_cols=248 Identities=14% Similarity=0.112 Sum_probs=139.8
Q ss_pred CCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 74899621899786899820167421221887775321000121125449999779991677760268867655554322
Q 005498 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIY 465 (693)
Q Consensus 386 spaiaDiDGDG~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~i~W~~~l~l~~~~~~~~~~~~ 465 (693)
.++++|+||||++||+.. ......+|.|.+ ..+|.. . ..+....... ... ....
T Consensus 117 ~~~~~D~dgDG~~Dl~~~--~~~~~~~~~n~g-~g~f~~---------~----------~~~~~~~~~~---~gw-~~~~ 170 (401)
T 2bwr_A 117 IRFMADLRKTGRADIVGF--GDGGIYISRNNG-GGQFAP---------A----------QLALNNFGYA---QGW-RLDR 170 (401)
T ss_dssp EEEEECCSSSSSCEEEEE--CSSSEEEECBCS-TTCBCC---------C----------EEEESCSSGG---GTC-CTTT
T ss_pred EEEEECCCCCCCCCEEEE--CCCCEEEEEECC-CCCCCC---------C----------CCCCCCCCCC---CCC-CCCC
T ss_conf 147434799998677898--899789999688-873026---------5----------0203676546---764-4577
Q ss_pred CCCEEEECCCCCCCCEEEEEECCEEEEEECCCCEEEEECCC----C--C-----CCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 47299943799972099996098599993799431000012----2--4-----41020499962399974899973899
Q 005498 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLE----M--A-----EIQGAVVAADINDDGKIELVTTDTHG 534 (693)
Q Consensus 466 sspavaDlDgDG~~DIiVg~~~G~lyv~~~~G~~~~~~~~~----~--g-----~~~s~~~v~DiDgDG~~DIvv~~~~G 534 (693)
..++++|+|+||++||++.. .+.+++|.++|...+..+.. . + .....+.++|+|+||++||++... +
T Consensus 171 ~~~~~~D~dgDG~~Dl~~~~-~~~~~~~~n~g~g~f~~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~~-~ 248 (401)
T 2bwr_A 171 HLRFLADVTGDGLLDVVGFG-ENQVYIARNSGNGTFQPAQAVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFGV-A 248 (401)
T ss_dssp CEEEEECSSSSSCCEEEEEC-SSCEEEECBCSSSCBCCCEEEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEECS-S
T ss_pred CCEEEEECCCCCCCCEEEEC-CCCEEEEEECCCCCEECCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECC-C
T ss_conf 60588871799983578978-994899996898723132363156664767763378515515769999805899779-9
Q ss_pred CEEEEECCCCEEEEEEEC--CC---------CCCCCEEEECCCCCCCCEEEECCCCCEEEEECC-CCCEEECCEECC---
Q ss_conf 399994489700598002--44---------446859992279998229999129929999889-996450411014---
Q 005498 535 NVAAWTAEGKGIWEQHLK--SL---------VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK-DGSKVRPYPYRT--- 599 (693)
Q Consensus 535 ~v~~~~~~G~~~W~~~~~--s~---------~~~sv~vgDiDGDG~~DIvv~s~sG~i~~l~~~-~G~~~~~~~~~~--- 599 (693)
.+++|.++|...|..... .. ....+.++|+|+||++||++.. .+.+++|.+. +|.+........
T Consensus 249 ~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dlv~~~-~~~~~~~~n~g~g~f~~~~~~~~~~~ 327 (401)
T 2bwr_A 249 GVYTSLNNGNGTFGAVNLVLKDFGVNSGWRVEKHVRCVSSLTNKKVGDIIGFG-DAGVYVALNNGNGTFGPVKRVIDNFG 327 (401)
T ss_dssp SEEEECBCSSSCBCCCEEEESCSSGGGTCCTTTCEEEEECCSTTCSCEEEEEC-SSSEEEECBCSSSCBCCCEEEESCSS
T ss_pred CEEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCEEEEEECCCCCCCCCCCEECCCCC
T ss_conf 59999707985026852314676667763245762166867999971189976-99099996589864567502104655
Q ss_pred -C-C--CCCCCEEEEECCCCCCCCCCEEEEEEECCCEEEEEC--CCCCCEEEEECCC-CCEEEEEEEEECCCCCCCEEE
Q ss_conf -7-8--310122998226977879984799990598499990--9998525775089-611108999402899842999
Q 005498 600 -H-G--RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID--GPTSCADVVDIGE-TSYSMVLADNVDGGDDLDLIV 671 (693)
Q Consensus 600 -~-g--~~~s~v~l~DldGDG~~dg~~DIvv~s~dG~ly~~d--g~~g~~~~i~~g~-~~~s~v~v~DlDGDG~~DLIv 671 (693)
. + .....+.++|+|+||. +||++.+ .+.++++. +...+.....+.. ..+. .+ ++.+..+++++
T Consensus 328 ~~~g~~~~~~~~~~~D~dgDG~----~Dlv~~~-~~~~~~~~n~g~g~f~~~~~~~~~~~~~---~G-w~~~~~~~~~~ 397 (401)
T 2bwr_A 328 YNQGWRVDKHPRFVVDLTGDGC----ADIVGFG-ENSVWACMNKGDGTFGPIMKLIDDMTVS---KG-WTLQKTVRYAA 397 (401)
T ss_dssp GGGTCCTTTCCEEEECSSSSSS----CEEEEEC-SSCEEEEEECSSSCEEEEEEEESCSSGG---GT-CCGGGCEEEEE
T ss_pred CCCCCCCCCCEEEEECCCCCCC----CCEEEEC-CCCEEEEEECCCCCCCCCEEEECCCCCC---CC-CCCCCCCCCEE
T ss_conf 5778445664555471589997----3089988-9958999968876425723652366635---56-77889825057
No 4
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=1.00 E-value=1 Score=155.28 Aligned_cols=151 Identities=16% Similarity=0.270 Sum_probs=78.5
Q ss_pred EEECCCC-CCCCEEEEEECCEEEEEECCCCEEEEECC-CCC---------CCCCCEEEEEECCCCCEEEEEEC--CCCCE
Q ss_conf 9943799-97209999609859999379943100001-224---------41020499962399974899973--89939
Q 005498 470 VVDLDGD-GNLDILVGTSFGLFYVLDHHGKIREKFPL-EMA---------EIQGAVVAADINDDGKIELVTTD--THGNV 536 (693)
Q Consensus 470 vaDlDgD-G~~DIiVg~~~G~lyv~~~~G~~~~~~~~-~~g---------~~~s~~~v~DiDgDG~~DIvv~~--~~G~v 536 (693)
+.|+|+| |..||++++..|..+++..++ .|.... ..+ ...+.+.++|+++||..+|++.. ..+.+
T Consensus 222 aGDINGD~G~dDILVASkEGV~wf~~~dG--~Wk~~~Ig~G~as~~~~d~~GagDIavGDLdGDG~deIaTIEPfHGd~V 299 (900)
T 4a7k_A 222 AAETDGEMRFDQIILAGRDGVDCLWYDGA--RWQRHLVGTGLPEERGDPYWGAGSAAVGRVGDDYAGYICSAEAFHGNTV 299 (900)
T ss_dssp GGGGTTSCSSCEEEEEETTEEEEEEECSS--CEEEEEEECCBCCCTTCCCCBCSEEEEEEETTEEEEEEEEEESTTCSEE
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEECCC--CCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEE
T ss_conf 34545888975399974888589993899--8378882578743345677886524899727987425999637769989
Q ss_pred EEEECCCCE-------EEEEEECCC----------CCCCCEEEECCCCCCCCEEEECCCCC--------EEEEEC---CC
Q ss_conf 999448970-------059800244----------44685999227999822999912992--------999988---99
Q 005498 537 AAWTAEGKG-------IWEQHLKSL----------VTQGPSIGDVDGDGHSDVVVPTLSGN--------IYVLSG---KD 588 (693)
Q Consensus 537 ~~~~~~G~~-------~W~~~~~s~----------~~~sv~vgDiDGDG~~DIvv~s~sG~--------i~~l~~---~~ 588 (693)
.+|...+.. .|++.+... ..+.+.++|+||||..||+++...+. +++|.. ..
T Consensus 300 aVYt~~~ggp~g~~~~~WkrhVId~~g~~~e~~~~fgHaL~~gDldGDG~~DIVvG~R~~~~~D~~~~gL~~Y~~~D~g~ 379 (900)
T 4a7k_A 300 SVYTKPAGSPTGIVRAEWTRHVLDVFGPLNGKHTGSIHQVVCADIDGDGEDEFLVAMMGADPPDFQRTGVWCYKLVDRTN 379 (900)
T ss_dssp EEEECCTTCCSSSTTSCCEEEEEEECCCCCTTSCCSEEEEEEECTTSSSBCEEEEEEECCSSCCGGGEEEEEEEEEETTT
T ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC
T ss_conf 99978898755545554103540246766534467740689996289986448999457877667754399999734889
Q ss_pred CCEEECCEECCCCCCCCCEEEEECCCCC-CCCCCEEEEEEEC
Q ss_conf 9645041101478310122998226977-8799847999905
Q 005498 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRG-EKSKGLTIVTTSF 629 (693)
Q Consensus 589 G~~~~~~~~~~~g~~~s~v~l~DldGDG-~~dg~~DIvv~s~ 629 (693)
|.+... .+... ....+.++|+|||| . +||++.++
T Consensus 380 GsF~~~-vID~g--~~~~v~aaDLDGDG~d----lDIV~asy 414 (900)
T 4a7k_A 380 MKFSKT-KVSSV--SAGRIATANFHSQGSE----VDIATISY 414 (900)
T ss_dssp TEEEEE-EEECS--CCSEEEEECCSSSSSC----CEEEEECC
T ss_pred CCEEEE-EECCC--CCCEEEEECCCCCCCC----CCEEEEEC
T ss_conf 957789-98079--7224788515789972----44899613
No 5
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=1.00 E-value=1 Score=141.24 Aligned_cols=248 Identities=19% Similarity=0.243 Sum_probs=157.7
Q ss_pred CCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCCE--EEEEECCCCCCCCCCCCC
Q ss_conf 748996218997868998201674212218877753210001211254499997799916--777602688676555543
Q 005498 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQV--KWTTDLDLSTDNASFRAY 463 (693)
Q Consensus 386 spaiaDiDGDG~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~i--~W~~~l~l~~~~~~~~~~ 463 (693)
.++++++||+ .+++|++..+| . ...+.+|+..++++ +|.....-.. ...+.+.
T Consensus 269 ~~~vayLDG~-~Ps~v~~rGyY------t-----------------r~~v~A~d~~~~~L~~~W~~d~~~~~-~~~~~gq 323 (591)
T 2zux_A 269 LAGIAYLDGQ-RPSLIMTRGYY------A-----------------KTMLVAYNFRDGKLSKLWTLDSSKSG-NEAFAGQ 323 (591)
T ss_dssp EEEEECTTSS-SCEEEEEECCS------S-----------------SCEEEEEEEETTEEEEEEEEETTSTT-CGGGSSC
T ss_pred EEEEEECCCC-CCEEEEECCCC------C-----------------EEEEEEEECCCCCEEEEEEECCCCCC-CCCCCCC
T ss_conf 1369987899-84499963544------2-----------------34899997789925778876079887-5431245
Q ss_pred CCCCCEEEECCCCCCCCEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCC-CEEEEEECCCC----CEEE
Q ss_conf 224729994379997209999609859999379943100001224410204999623999-74899973899----3999
Q 005498 464 IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDG-KIELVTTDTHG----NVAA 538 (693)
Q Consensus 464 ~~sspavaDlDgDG~~DIiVg~~~G~lyv~~~~G~~~~~~~~~~g~~~s~~~v~DiDgDG-~~DIvv~~~~G----~v~~ 538 (693)
...++.++|+|+||+.||+++.. +++.+|+.+|..++..+ ..+.++|||.+. -+|++.+...+ -..+
T Consensus 324 g~h~~~vaDVDgDG~dEIv~Gs~-----~iD~dG~~L~st~~gHG---Da~hv~dldP~r~GlEv~~~~E~~~~~~G~~~ 395 (591)
T 2zux_A 324 GNHNLSIADVDGDGKDEIIFGSM-----AVDHDGKGMYSTGLGHG---DALHTGDLDPGRPGLEVFQVHEDKNAKYGLSF 395 (591)
T ss_dssp CCSCCEEECCSSSSSCEEEETTE-----EECTTSCEEEECSCCCC---SCEEEECCCTTSSSCEEEEECCCTTSSCSEEE
T ss_pred CCCCCEEEECCCCCCCEEEEEEE-----EECCCCCEEEECCCCCC---CEEEEEECCCCCCCCEEEEEECCCCCCCCCEE
T ss_conf 78887258578999745997215-----89999988660798988---74378305999998689998567888875389
Q ss_pred EE-CCCCEEEEEEECCCCCCCCEEEECCCCCC-CCEEEECCCCCEEEEECCCCCEEECC-EECCCCCCCCCEEEEECCCC
Q ss_conf 94-48970059800244446859992279998-22999912992999988999645041-10147831012299822697
Q 005498 539 WT-AEGKGIWEQHLKSLVTQGPSIGDVDGDGH-SDVVVPTLSGNIYVLSGKDGSKVRPY-PYRTHGRVMNQVLLVDLTKR 615 (693)
Q Consensus 539 ~~-~~G~~~W~~~~~s~~~~sv~vgDiDGDG~-~DIvv~s~sG~i~~l~~~~G~~~~~~-~~~~~g~~~s~v~l~DldGD 615 (693)
.+ .+|+.+|....... .....++|||-+.. .++.. .+ .+++ ..|+.++.. |. +.-....++||
T Consensus 396 ~dA~tG~vlw~~~~~~d-~Gr~~~~Didp~~pG~E~w~---~~--~l~~-~~G~~i~~~~p~-------~~N~~i~WdGD 461 (591)
T 2zux_A 396 RDAATGKILWGVYAGKD-VGRGMAADIDPRYPGQEVWA---NG--SLYS-AKGVKIGSGVPS-------STNFGIWWDGD 461 (591)
T ss_dssp EETTTCCEEEEECCSSC-CCCEEEECCCTTSSSCEEEE---TT--EEEC-TTSCBCSSCCCS-------CCSEEECCSSS
T ss_pred EECCCCCEEEECCCCCC-CCCEEEEECCCCCCCEEEEE---CC--CEEC-CCCCEECCCCCC-------CCCEEEEECCC
T ss_conf 98889858997279887-77546885279997307983---58--6499-899890578998-------73146887898
Q ss_pred CCCCCCEEEEEEECCCEEEEECCCCCCEEEEECCC-------CCEEEEEEEEECCCCCCCEEEEEECC-CEEEEECCCCC
Q ss_conf 78799847999905984999909998525775089-------61110899940289984299996089-19999779998
Q 005498 616 GEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGE-------TSYSMVLADNVDGGDDLDLIVTTMNG-NVFCFSTPAPH 687 (693)
Q Consensus 616 G~~dg~~DIvv~s~dG~ly~~dg~~g~~~~i~~g~-------~~~s~v~v~DlDGDG~~DLIv~~~dG-~v~~~~~~~p~ 687 (693)
.. .+++-. +.+..+....+...++-... +.....+.+||-||.+-|+|+.+.+. .+.+|.+.-|.
T Consensus 462 l~----relld~---~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt 534 (591)
T 2zux_A 462 LL----REQLDS---NRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPT 534 (591)
T ss_dssp SS----CEEEET---TEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCC
T ss_pred CC----HHHHCC---CEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCC
T ss_conf 73----766277---32776256798335799624532278777887358720266746899984899969999589987
No 6
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=1.00 E-value=1 Score=140.30 Aligned_cols=195 Identities=22% Similarity=0.149 Sum_probs=129.6
Q ss_pred CCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 63474899621899786899820167421221887775321000121125449999779991677760268867655554
Q 005498 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRA 462 (693)
Q Consensus 383 ilsspaiaDiDGDG~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~i~W~~~l~l~~~~~~~~~ 462 (693)
-.+.|+++|+||||+.||+++.. +++ .+|+.+|...+.-
T Consensus 324 g~h~~~vaDVDgDG~dEIv~Gs~-------------------------------~iD-~dG~~L~st~~gH--------- 362 (591)
T 2zux_A 324 GNHNLSIADVDGDGKDEIIFGSM-------------------------------AVD-HDGKGMYSTGLGH--------- 362 (591)
T ss_dssp CCSCCEEECCSSSSSCEEEETTE-------------------------------EEC-TTSCEEEECSCCC---------
T ss_pred CCCCCEEEECCCCCCCEEEEEEE-------------------------------EEC-CCCCEEEECCCCC---------
T ss_conf 78887258578999745997215-------------------------------899-9998866079898---------
Q ss_pred CCCCCCEEEECCCCC-CCCEEEEEEC-----CEEEEEE-CCCCEEEEECCCCCCCCCCEEEEEECCCC-CEEEEEECCCC
Q ss_conf 322472999437999-7209999609-----8599993-79943100001224410204999623999-74899973899
Q 005498 463 YIYSSPTVVDLDGDG-NLDILVGTSF-----GLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDG-KIELVTTDTHG 534 (693)
Q Consensus 463 ~~~sspavaDlDgDG-~~DIiVg~~~-----G~lyv~~-~~G~~~~~~~~~~g~~~s~~~v~DiDgDG-~~DIvv~~~~G 534 (693)
.....++|||.+. -++++.+... |..+ ++ .+|+..|..+.. .-.+...++||+.+. -.|+.. ..
T Consensus 363 --GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~-~dA~tG~vlw~~~~~--~d~Gr~~~~Didp~~pG~E~w~---~~ 434 (591)
T 2zux_A 363 --GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSF-RDAATGKILWGVYAG--KDVGRGMAADIDPRYPGQEVWA---NG 434 (591)
T ss_dssp --CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEE-EETTTCCEEEEECCS--SCCCCEEEECCCTTSSSCEEEE---TT
T ss_pred --CCEEEEEECCCCCCCCEEEEEECCCCCCCCCEE-EECCCCCEEEECCCC--CCCCCEEEEECCCCCCCEEEEE---CC
T ss_conf --874378305999998689998567888875389-988898589972798--8777546885279997307983---58
Q ss_pred CEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCCCCEEEECCCCCEEEEECCCCC--EEECCEE--CCCCCCCCCEEEE
Q ss_conf 39999448970059800244446859992279998229999129929999889996--4504110--1478310122998
Q 005498 535 NVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS--KVRPYPY--RTHGRVMNQVLLV 610 (693)
Q Consensus 535 ~v~~~~~~G~~~W~~~~~s~~~~sv~vgDiDGDG~~DIvv~s~sG~i~~l~~~~G~--~~~~~~~--~~~g~~~s~v~l~ 610 (693)
.++..+|+.++.... . ..-....+|||...+++-. +.+..|...+|+ .+..++- ...+.-..|.+.+
T Consensus 435 --~l~~~~G~~i~~~~p---~-~~N~~i~WdGDl~relld~---~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~a 505 (591)
T 2zux_A 435 --SLYSAKGVKIGSGVP---S-STNFGIWWDGDLLREQLDS---NRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQA 505 (591)
T ss_dssp --EEECTTSCBCSSCCC---S-CCSEEECCSSSSSCEEEET---TEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEE
T ss_pred --CEECCCCCEECCCCC---C-CCCEEEEECCCCCHHHHCC---CEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf --649989989057899---8-7314688789873766277---327762567983357996245322787778873587
Q ss_pred ECCCCCCCCCCEEEEEEECCC-EEEEECCC
Q ss_conf 226977879984799990598-49999099
Q 005498 611 DLTKRGEKSKGLTIVTTSFDG-YLYLIDGP 639 (693)
Q Consensus 611 DldGDG~~dg~~DIvv~s~dG-~ly~~dg~ 639 (693)
|+-||.+ -++++.+.+. .|++|...
T Consensus 506 Di~GDwR----EEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 506 DLLGDWR----EEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp CCSSSSS----CEEEEEETTSSEEEEECCC
T ss_pred ECCCCCE----EEEEEEECCCCEEEEEECC
T ss_conf 2026674----6899984899969999589
No 7
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=135.66 Aligned_cols=256 Identities=17% Similarity=0.224 Sum_probs=157.4
Q ss_pred CCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCC--EEEEEECCCCCCCCCCCCC
Q ss_conf 74899621899786899820167421221887775321000121125449999779991--6777602688676555543
Q 005498 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQ--VKWTTDLDLSTDNASFRAY 463 (693)
Q Consensus 386 spaiaDiDGDG~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~--i~W~~~l~l~~~~~~~~~~ 463 (693)
.+.++++||+ .+++|++..+| . ...+.+|+..+++ ..|........ ...+...
T Consensus 273 ~~~vayLDG~-~Ps~v~~rG~Y------t-----------------r~~v~A~d~~~g~L~~~W~~ds~~~~-~~~~~gq 327 (620)
T 2zuy_A 273 LAGTAYLDGE-RPSLVMARGYY------T-----------------RTVLVAYDFRNGRLKKRWVFDSNQPG-HEAYAGQ 327 (620)
T ss_dssp EEEEECTTCC--CEEEEEECSS------S-----------------SCEEEEEEEETTEEEEEEEEETTSTT-CGGGTTC
T ss_pred CEEEEECCCC-CCEEEEECCCC------C-----------------CEEEEEEECCCCCEEEEEEECCCCCC-CCCCCCC
T ss_conf 3037863799-84379924755------3-----------------20699997469923564576178876-4322134
Q ss_pred CCCCCEEEECCCCCCCCEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCC-CCEEEEEECCC---C-CEEE
Q ss_conf 22472999437999720999960985999937994310000122441020499962399-97489997389---9-3999
Q 005498 464 IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDD-GKIELVTTDTH---G-NVAA 538 (693)
Q Consensus 464 ~~sspavaDlDgDG~~DIiVg~~~G~lyv~~~~G~~~~~~~~~~g~~~s~~~v~DiDgD-G~~DIvv~~~~---G-~v~~ 538 (693)
...+++++|+|+||+.||+++. .+++.+|+.+|..++.. ...+.++|||.| .-++++.+..+ . -..+
T Consensus 328 g~H~~svaDVDGDG~dEIv~Gs-----~~iD~dG~~L~st~~gH---GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~ 399 (620)
T 2zuy_A 328 GNHSLSVADVDGDGKDEIIYGA-----MAVDHDGTGLYSTGLGH---GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSL 399 (620)
T ss_dssp CCSSCEEECCSSSSSCEEEETT-----EEECTTSSEEEECSCCC---CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEE
T ss_pred CCCCCEEEECCCCCCEEEEEEE-----EEECCCCCEEEECCCCC---CCEEEEEECCCCCCCCEEEEEECCCCCCCCEEE
T ss_conf 6767537836899850589813-----58879997876268887---765689866999988789997357898875498
Q ss_pred EEC-CCCEEEEEEECCCCCCCCEEEECCCCCC-CCEEEECC---CC-CEEEEECCCCCEEECCEECCCCCCCCCEEEEEC
Q ss_conf 944-8970059800244446859992279998-22999912---99-299998899964504110147831012299822
Q 005498 539 WTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGH-SDVVVPTL---SG-NIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDL 612 (693)
Q Consensus 539 ~~~-~G~~~W~~~~~s~~~~sv~vgDiDGDG~-~DIvv~s~---sG-~i~~l~~~~G~~~~~~~~~~~g~~~s~v~l~Dl 612 (693)
++. +|+.+|....... .....++|||-+-. .++..... +. .-.++. ..|+.+... .. .+.-+..-+
T Consensus 400 ~DA~tG~vlw~~~~~~D-~Gr~~~~Didp~~pG~E~w~~~~~~~~~~~~~l~~-~~G~~i~~~---~p---~~~N~~i~W 471 (620)
T 2zuy_A 400 RDAGTGEILWGVHAGTD-VGRGMAAHIDPSYKGSLVWGIDPPGNDGMSYGLFT-SKGEKISDK---AP---SSANFAIWW 471 (620)
T ss_dssp EETTTCCEEEEECCSSC-CCEEEEECCCTTSSSCEEEEECCTTSCCCEEEEEE-TTCCEEESS---CC---SCCSEEECC
T ss_pred EECCCCCEEEEECCCCC-CCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEC-CCCCCCCCC---CC---CCCCEEEEE
T ss_conf 98899858997268666-77558985189997528998446534567886487-899894478---99---873157887
Q ss_pred CCCCCCCCCEEEEEEECC-----CEEEEECCCCCCEEEEECCCC-------CEEEEEEEEECCCCCCCEEEEEEC-CCEE
Q ss_conf 697787998479999059-----849999099985257750896-------111089994028998429999608-9199
Q 005498 613 TKRGEKSKGLTIVTTSFD-----GYLYLIDGPTSCADVVDIGET-------SYSMVLADNVDGGDDLDLIVTTMN-GNVF 679 (693)
Q Consensus 613 dGDG~~dg~~DIvv~s~d-----G~ly~~dg~~g~~~~i~~g~~-------~~s~v~v~DlDGDG~~DLIv~~~d-G~v~ 679 (693)
+||-. .+++-...+ +.+..++...+...++-.... .....+.+||-||-+-|+|+.+.+ ..+.
T Consensus 472 dGDl~----re~ld~~~~~~~~~~~i~k~~~~~~~~~~l~t~~g~~snngTk~~P~l~aDi~GDWREEvi~~t~D~~~Lr 547 (620)
T 2zuy_A 472 DGDLV----RELLDHDWDGTIGRPKIEKWDAENGCLKTIFQPAGVLSNNGTKGNPVLQANLFGDWREEVIWRTEDSSALR 547 (620)
T ss_dssp SSSSS----CEEEEEEECSSCEEEEEEEEETTTTEEEEEECCTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEE
T ss_pred CCCCC----HHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEE
T ss_conf 79865----75607754444677669764577884058997403311688768801261144657002899728999699
Q ss_pred EEECCCC
Q ss_conf 9977999
Q 005498 680 CFSTPAP 686 (693)
Q Consensus 680 ~~~~~~p 686 (693)
+|.+.-|
T Consensus 548 IYtt~~p 554 (620)
T 2zuy_A 548 IYTTTHL 554 (620)
T ss_dssp EECCCCC
T ss_pred EEECCCC
T ss_conf 9918988
No 8
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=130.27 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=126.1
Q ss_pred CCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 63474899621899786899820167421221887775321000121125449999779991677760268867655554
Q 005498 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRA 462 (693)
Q Consensus 383 ilsspaiaDiDGDG~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~i~W~~~l~l~~~~~~~~~ 462 (693)
-.+.++++|+||||+.|||++. .+++ .+|+.+|...+.
T Consensus 328 g~H~~svaDVDGDG~dEIv~Gs-------------------------------~~iD-~dG~~L~st~~g---------- 365 (620)
T 2zuy_A 328 GNHSLSVADVDGDGKDEIIYGA-------------------------------MAVD-HDGTGLYSTGLG---------- 365 (620)
T ss_dssp CCSSCEEECCSSSSSCEEEETT-------------------------------EEEC-TTSSEEEECSCC----------
T ss_pred CCCCCEEEECCCCCCEEEEEEE-------------------------------EEEC-CCCCEEEECCCC----------
T ss_conf 6767537836899850589813-------------------------------5887-999787626888----------
Q ss_pred CCCCCCEEEECCCCC-CCCEEEEEECC----EEEEEE-CCCCEEEEECCCCCCCCCCEEEEEECCCCC-EEEEEECC---
Q ss_conf 322472999437999-72099996098----599993-799431000012244102049996239997-48999738---
Q 005498 463 YIYSSPTVVDLDGDG-NLDILVGTSFG----LFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGK-IELVTTDT--- 532 (693)
Q Consensus 463 ~~~sspavaDlDgDG-~~DIiVg~~~G----~lyv~~-~~G~~~~~~~~~~g~~~s~~~v~DiDgDG~-~DIvv~~~--- 532 (693)
-..+..++|||.|. -++|+.+..++ ...+++ .+|+.+|..+. +.-.+...++||+-+-. .|+.....
T Consensus 366 -HGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~--~~D~Gr~~~~Didp~~pG~E~w~~~~~~~ 442 (620)
T 2zuy_A 366 -HGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHA--GTDVGRGMAAHIDPSYKGSLVWGIDPPGN 442 (620)
T ss_dssp -CCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC--SSCCCEEEEECCCTTSSSCEEEEECCTTS
T ss_pred -CCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECC--CCCCCCEEEEECCCCCCCEEEEEECCCCC
T ss_conf -776568986699998878999735789887549898899858997268--66677558985189997528998446534
Q ss_pred CC-CEEEEECCCCEEEEEEECCCCCCC-CEEEECCCCCCCCEEEECCC-----CCEEEEECCCCCE--EECCE--ECCCC
Q ss_conf 99-399994489700598002444468-59992279998229999129-----9299998899964--50411--01478
Q 005498 533 HG-NVAAWTAEGKGIWEQHLKSLVTQG-PSIGDVDGDGHSDVVVPTLS-----GNIYVLSGKDGSK--VRPYP--YRTHG 601 (693)
Q Consensus 533 ~G-~v~~~~~~G~~~W~~~~~s~~~~s-v~vgDiDGDG~~DIvv~s~s-----G~i~~l~~~~G~~--~~~~~--~~~~g 601 (693)
+. ...++..+|+.+... .+.+ -...-+|||...+++-.... +.|.-|....++. +..+. ....+
T Consensus 443 ~~~~~~l~~~~G~~i~~~-----~p~~~N~~i~WdGDl~re~ld~~~~~~~~~~~i~k~~~~~~~~~~l~t~~g~~snng 517 (620)
T 2zuy_A 443 DGMSYGLFTSKGEKISDK-----APSSANFAIWWDGDLVRELLDHDWDGTIGRPKIEKWDAENGCLKTIFQPAGVLSNNG 517 (620)
T ss_dssp CCCEEEEEETTCCEEESS-----CCSCCSEEECCSSSSSCEEEEEEECSSCEEEEEEEEETTTTEEEEEECCTTEECBSG
T ss_pred CCCCCCEECCCCCCCCCC-----CCCCCCEEEEECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCC
T ss_conf 567886487899894478-----998731578877986575607754444677669764577884058997403311688
Q ss_pred CCCCCEEEEECCCCCCCCCCEEEEEEECCC-EEEEECCC
Q ss_conf 310122998226977879984799990598-49999099
Q 005498 602 RVMNQVLLVDLTKRGEKSKGLTIVTTSFDG-YLYLIDGP 639 (693)
Q Consensus 602 ~~~s~v~l~DldGDG~~dg~~DIvv~s~dG-~ly~~dg~ 639 (693)
.-..|.+.+|+-|| ..-++++.+.+. .|.+|...
T Consensus 518 Tk~~P~l~aDi~GD----WREEvi~~t~D~~~LrIYtt~ 552 (620)
T 2zuy_A 518 TKGNPVLQANLFGD----WREEVIWRTEDSSALRIYTTT 552 (620)
T ss_dssp GGCBCSEEECCSSS----SSCEEEEEETTSSEEEEECCC
T ss_pred CCCCCCEEECCCCC----CEEEEEEECCCCCEEEEEECC
T ss_conf 76880126114465----700289972899969999189
No 9
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=1.00 E-value=1 Score=128.77 Aligned_cols=175 Identities=17% Similarity=0.292 Sum_probs=112.0
Q ss_pred CCCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 47489962189978689982016742122188777532100012112544999977999167776026886765555432
Q 005498 385 STPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYI 464 (693)
Q Consensus 385 sspaiaDiDGDG~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~i~W~~~l~l~~~~~~~~~~~ 464 (693)
.+++++|+||||..||+++...+. ...|.+++|....-.. ...+.. .....+.
T Consensus 224 ~sVa~gD~ngDG~~DlvvGaP~~~---------------------~~~G~V~i~~~~~~~~--~~~~~g----~~~gs~f 276 (967)
T 3ije_A 224 YSVAVGDFNGDGIDDFVSGVPRAA---------------------RTLGMVYIYDGKNMSS--LYNFTG----EQMAAYF 276 (967)
T ss_dssp SEEEEECCSSSSSCEEEEEETTHH---------------------HHTCEEEEECSSSSCE--EEEEEC----SSTTSCT
T ss_pred EEEEEEEECCCCCEEEEEEECCCC---------------------CCCCEEEEEECCCCEE--EEEECC----CCCCCCE
T ss_conf 079999977999848999941337---------------------8886799993899305--667103----5567741
Q ss_pred CCCCEEEECCCCCCCCEEEEE-------------ECCEEEEEECCCCEEEEECCCC------CCCCCCEE-EEEECCCCC
Q ss_conf 247299943799972099996-------------0985999937994310000122------44102049-996239997
Q 005498 465 YSSPTVVDLDGDGNLDILVGT-------------SFGLFYVLDHHGKIREKFPLEM------AEIQGAVV-AADINDDGK 524 (693)
Q Consensus 465 ~sspavaDlDgDG~~DIiVg~-------------~~G~lyv~~~~G~~~~~~~~~~------g~~~s~~~-v~DiDgDG~ 524 (693)
..+++++|+|+||..||+++. ..|.+|+|.++|...+. +... +.....++ ++|+|+||.
T Consensus 277 G~sva~~D~ngDG~~DLvVgaP~~~~~~~~g~~~~~G~v~vy~~~g~g~f~-~~~l~g~~~~~~fG~sva~~gDlngDG~ 355 (967)
T 3ije_A 277 GFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQ-TTKLNGFEVFARFGSAIAPLGDLDQDGF 355 (967)
T ss_dssp TSEEEEECTTSSSCCEEEEEETTCEEECTTSCEEECCEEEEEECCSSSCCE-EEEEECSSTTSCTTSEEEEEESTTCSSS
T ss_pred EEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEE-EEECCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 578999923899974089982333455566665669828999978988263-3461476666777606885115688997
Q ss_pred EEEEEECC------CCCEEEEECCCCEEEEE---EECC---------CCCCCCE-EEECCCCCCCCEEEECC-CCCEEEE
Q ss_conf 48999738------99399994489700598---0024---------4446859-99227999822999912-9929999
Q 005498 525 IELVTTDT------HGNVAAWTAEGKGIWEQ---HLKS---------LVTQGPS-IGDVDGDGHSDVVVPTL-SGNIYVL 584 (693)
Q Consensus 525 ~DIvv~~~------~G~v~~~~~~G~~~W~~---~~~s---------~~~~sv~-vgDiDGDG~~DIvv~s~-sG~i~~l 584 (693)
.||+++.. .|.+++|.+.+.+.+.. .+.. ..+.++. .+|+||||.+||++++. ++.+++|
T Consensus 356 ~Dl~VGap~~~~~~~G~vyiy~g~~~G~~~~~sq~i~~~~~~~~~~~~FG~sv~~~~DldgDG~~DL~VGa~g~~~v~l~ 435 (967)
T 3ije_A 356 NDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILY 435 (967)
T ss_dssp CEEEEEETTCSSSSCCEEEEEEEETTEECSSCSEEEECCCCCSSSCCCEEEEEEEEECCSSSSSCEEEEEEGGGTEEEEE
T ss_pred CCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEE
T ss_conf 55599544567788853999945899975452266326666665445456111020755999962589953688728999
Q ss_pred ECC
Q ss_conf 889
Q 005498 585 SGK 587 (693)
Q Consensus 585 ~~~ 587 (693)
+..
T Consensus 436 rsr 438 (967)
T 3ije_A 436 RAR 438 (967)
T ss_dssp CBC
T ss_pred ECC
T ss_conf 507
No 10
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=1.00 E-value=1 Score=125.37 Aligned_cols=140 Identities=19% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 47489962189978689982016742122188777532100012112544999977999167776026886765555432
Q 005498 385 STPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYI 464 (693)
Q Consensus 385 sspaiaDiDGDG~~DIVv~~s~~~~~~~y~n~~~~~~~~~i~i~~~~~G~v~vfd~~tG~i~W~~~l~l~~~~~~~~~~~ 464 (693)
++++++|+||||..||+++...++... .++. ..-.|.+++|.... ...|. ...+... ......
T Consensus 278 ~sva~~D~ngDG~~DLvVgaP~~~~~~----~~g~---------~~~~G~v~vy~~~g-~g~f~-~~~l~g~--~~~~~f 340 (967)
T 3ije_A 278 FSVAATDINGDDYADVFIGAPLFMDRG----SDGK---------LQEVGQVSVSLQRA-SGDFQ-TTKLNGF--EVFARF 340 (967)
T ss_dssp SEEEEECTTSSSCCEEEEEETTCEEEC----TTSC---------EEECCEEEEEECCS-SSCCE-EEEEECS--STTSCT
T ss_pred EEEEEEECCCCCCCEEEEECCCCCCCC----CCCC---------CCCCCCEEEEEECC-CCCEE-EEECCCC--CCCCCC
T ss_conf 789999238999740899823334555----6666---------56698289999789-88263-3461476--666777
Q ss_pred CCCCE-EEECCCCCCCCEEEEEE------CCEEEEEECCCCEEEEECCCC--C---------CCCCCEE-EEEECCCCCE
Q ss_conf 24729-99437999720999960------985999937994310000122--4---------4102049-9962399974
Q 005498 465 YSSPT-VVDLDGDGNLDILVGTS------FGLFYVLDHHGKIREKFPLEM--A---------EIQGAVV-AADINDDGKI 525 (693)
Q Consensus 465 ~sspa-vaDlDgDG~~DIiVg~~------~G~lyv~~~~G~~~~~~~~~~--g---------~~~s~~~-v~DiDgDG~~ 525 (693)
..+++ ++|+|+||..||+++.. .|.+|+|.+.+......+... + ....++. .+|+|+||..
T Consensus 341 G~sva~~gDlngDG~~Dl~VGap~~~~~~~G~vyiy~g~~~G~~~~~sq~i~~~~~~~~~~~~FG~sv~~~~DldgDG~~ 420 (967)
T 3ije_A 341 GSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYP 420 (967)
T ss_dssp TSEEEEEESTTCSSSCEEEEEETTCSSSSCCEEEEEEEETTEECSSCSEEEECCCCCSSSCCCEEEEEEEEECCSSSSSC
T ss_pred CCEEEEEECCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 60688511568899755599544567788853999945899975452266326666665445456111020755999962
Q ss_pred EEEEECCC-CCEEEEEC
Q ss_conf 89997389-93999944
Q 005498 526 ELVTTDTH-GNVAAWTA 541 (693)
Q Consensus 526 DIvv~~~~-G~v~~~~~ 541 (693)
||+++... +.+.+|+.
T Consensus 421 DL~VGa~g~~~v~l~rs 437 (967)
T 3ije_A 421 DLIVGAFGVDRAILYRA 437 (967)
T ss_dssp EEEEEEGGGTEEEEECB
T ss_pred CEEEECCCCCEEEEEEC
T ss_conf 58995368872899950
Done!