BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005499
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINA 607
+ W+ L N Y + + KA EL SAE + G + G EA+ Y A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 608 LLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRI 667
L ++P +G+ + K G A AL ++P + +AWY LG + G
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119
Query: 668 ADAADCFQAASMLE 681
+A + +Q A L+
Sbjct: 120 DEAIEYYQKALELD 133
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINA 607
+ W+ L N Y + + KA EL SAE + G + G EA+ Y A
Sbjct: 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Query: 608 LLIEP 612
L ++P
Sbjct: 130 LELDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 580 SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSL 639
SAE + G + G EA+ Y AL ++P+ +G+ + K G A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEY 65
Query: 640 LSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684
AL ++P N +AWY LG + G +A + +Q A L+ ++
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEAL 601
D N + W+ L N Y + + KA EL +AE + G + G EA+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 602 RAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKA 653
Y AL ++P+ +G+ + K G A AL ++P N +A
Sbjct: 64 EYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEA 113
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 545 NEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAY 604
N + W+ L N Y + + KA EL +AE + G + G EA+ Y
Sbjct: 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Query: 605 INALLIEPSYVPCKVLVGSLFSKLG 629
AL ++P+ K +G+ K G
Sbjct: 101 QKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 580 SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSL 639
SAE + G + G EA+ Y AL + P+ +G+ + K G A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGD--YDEAIEY 65
Query: 640 LSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAA 677
AL + P N +AWY LG + G +A + +Q A
Sbjct: 66 YQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEAL 601
D N + W+ L N Y + + KA EL +AE + G + G EA+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 602 RAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKA 653
Y AL + P+ +G+ + K G A AL + P N +A
Sbjct: 64 EYYQKALELYPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELYPNNAEA 113
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 545 NEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAY 604
N + W+ L N Y + + KA EL +AE + G + G EA+ Y
Sbjct: 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Query: 605 INALLIEPSYVPCKVLVGSLFSKLG 629
AL + P+ K +G+ K G
Sbjct: 101 QKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 580 SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSL 639
SAE G + G +A+ Y AL ++P+ +G+ + K G A
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGD--YQKAIEY 65
Query: 640 LSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684
AL ++P N KAWY G + G A + +Q A L+ ++
Sbjct: 66 YQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEAL 601
D N + W L N Y ++ KA EL +A + G + G +A+
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 602 RAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKA 653
Y AL ++P+ G+ + K G A AL ++P N KA
Sbjct: 64 EYYQKALELDPNNAKAWYRRGNAYYKQGD--YQKAIEDYQKALELDPNNAKA 113
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%)
Query: 545 NEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAY 604
N W+ L N Y ++ KA EL +A+ + G + G +A+ Y
Sbjct: 41 NNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDY 100
Query: 605 INALLIEPSYVPCKVLVGSLFSKLG 629
AL ++P+ K +G+ K G
Sbjct: 101 QKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 630 PKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAA 677
P P A LLS A+++EP +AW LG V+ G + A CF A
Sbjct: 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%)
Query: 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEAL 601
D N + W+ L N Y + + KA EL +AE + G + G EA+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 602 RAYINALLIEPSYVPCKVLVGSLFSKLG 629
Y AL ++P+ K +G+ K G
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 621 VGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680
+G+ + K G A AL ++P N +AWY LG + G +A + +Q A L
Sbjct: 15 LGNAYYKQGD--YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 681 EESD 684
+ ++
Sbjct: 73 DPNN 76
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 595 GQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAW 654
G A++AY++AL P + +G+L LG L A++ A+ +P AW
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG--RLEEAKACYLKAIETQPNFAVAW 172
Query: 655 YYLGLVHKDDGRIADAADCFQAASMLE 681
LG V G I A F+ A L+
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 600 ALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGL 659
A+ AY+ AL + P++ + ++ + G + +A A+ ++P A+ L
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQG--LIDLAIDTYRRAIELQPHFPDAYCNLAN 279
Query: 660 VHKDDGRIADAADCFQAASML--EESDPIESFSSI 692
K+ G +A+A DC+ A L +D + + ++I
Sbjct: 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 595 GQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAW 654
G+ EAL Y A+ I P++ +G+ ++ + + A + A++I P A
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM--QDVQGALQCYTRAIQINPAFADAH 114
Query: 655 YYLGLVHKDDGRIADAADCFQAASMLEESDP 685
L +HKD G I +A ++ A L+ P
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFP 145
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 545 NEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAY 604
N+ Q+ L LY+ +++ A + +A EL+ A++ + G + EAL AY
Sbjct: 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY 229
Query: 605 INALLIEPSYVPCKVLVGSLFSKL 628
AL I P YV + +S +
Sbjct: 230 NRALDINPGYVRVMYNMAVSYSNM 253
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 545 NEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAY 604
N+ Q+ L LY+ +++ A + +A EL+ A++ + G + EAL AY
Sbjct: 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY 229
Query: 605 INALLIEPSYV 615
AL I P YV
Sbjct: 230 NRALDINPGYV 240
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINA 607
+ W+ L N Y + + KA EL SAE + G + G EA+ Y A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 608 LLIEP 612
L ++P
Sbjct: 64 LELDP 68
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 622 GSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLE 681
G L+ LG +AL AR+ S AL I P + + YLG+ G DAA ++A +
Sbjct: 50 GVLYDSLGLRAL--ARNDFSQALAIRPDXPEVFNYLGIYLTQAGNF-DAA--YEAFDSVL 104
Query: 682 ESDPIESFSSI 692
E DP +++ +
Sbjct: 105 ELDPTYNYAHL 115
>pdb|3GEU|A Chain A, Crystal Structure Of Icar From Staphylococcus Aureus, A
Member Of The Tetracycline Repressor Protein Family
pdb|3GEU|B Chain B, Crystal Structure Of Icar From Staphylococcus Aureus, A
Member Of The Tetracycline Repressor Protein Family
pdb|3GEU|C Chain C, Crystal Structure Of Icar From Staphylococcus Aureus, A
Member Of The Tetracycline Repressor Protein Family
pdb|3GEU|D Chain D, Crystal Structure Of Icar From Staphylococcus Aureus, A
Member Of The Tetracycline Repressor Protein Family
Length = 189
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 78 FDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGR 137
F G +++ IQ L S S++ A S+ Q+ L LE+ YLKA QK G
Sbjct: 109 FSG-NIYGQIQDLNQSLSKEIAKFYDESKIKXTKEDFQNLILLFLESWYLKASFSQKFGA 167
Query: 138 LTEAANECKSVLDAVERIF 156
+ E+ ++ K + ++ IF
Sbjct: 168 VEESKSQFKDEVYSLLNIF 186
>pdb|2HR2|A Chain A, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|B Chain B, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|C Chain C, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|D Chain D, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|E Chain E, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|F Chain F, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
Length = 159
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 113 VSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVE 153
++Q L + A+Y +A +L LGR EA E K V++ +E
Sbjct: 93 LNQDEGKLWISAVYSRALALDGLGRGAEAXPEFKKVVEXIE 133
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 343 MALLLAAKICSEDCHLAAEG-----IQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAK 397
MA+L ++ SE+ L E + AR + KDE G GR A+
Sbjct: 290 MAILTGGQVISEEVGLTLENADLSLLGKARKVVVT---KDETTIVEGAGDTDAIAGRVAQ 346
Query: 398 V------SSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRN--LSTALRYAKQYI 449
+ S SDY+R +LQ E L L G A +L++R + A+R AK +
Sbjct: 347 IRQEIENSDSDYDREKLQ-ERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAV 405
Query: 450 D----ATGGSVL 457
+ A GG L
Sbjct: 406 EEGIVAGGGVTL 417
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 343 MALLLAAKICSEDCHLAAEG-----IQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAK 397
MA+L ++ SE+ L E + AR + KDE G GR A+
Sbjct: 248 MAILTGGQVISEEVGLTLENADLSLLGKARKVVVT---KDETTIVEGAGDTDAIAGRVAQ 304
Query: 398 V------SSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRN--LSTALRYAKQYI 449
+ S SDY+R +LQ E L L G A +L++R + A+R AK +
Sbjct: 305 IRQEIENSDSDYDREKLQ-ERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAV 363
Query: 450 D----ATGGSVL 457
+ A GG L
Sbjct: 364 EEGIVAGGGVTL 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,131,293
Number of Sequences: 62578
Number of extensions: 694671
Number of successful extensions: 1599
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 45
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)